31
1. J. D. Keasling, et al., Metabolic engineering delivers next-generation biofuels, Nature Biotechnology, 2008 2. J. E. Dueber, et al., Synthetic protein scaffolds provide modular control over metabolic flux, Nature Biotechnology, 2009 3. J. Nielsen, et al., Synergies between synthetic biology and metabolic engineering, Nature Biotechnology, 2011 4. R. Knight, et al., Unlocking the potential of metagenomics through replicated experimental design, Nature Biotechnology, 2012 5. R. Dahl, et al., Engineering dynamic pathway regulation using stress- response promoters, nature biotechnology, 2013 6. W. J. Holtz, et al., Engineering Static and Dynamic Control of Synthetic Pathways, Cell, 2010 7. Y. Xiao, et al., Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes, Cell, 2012 8. J. C. Way, et al., Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go, Cell, 2014 9. N. V. Fedoroff, et al., Radically Rethinking Agriculture for the 21st Century, Science, 2010 10. J. D. Keasling, Manufacturing molecules through metabolic engineering, Science, 2010 11. P. C. Ronald, et al., Plant and animal sensors of conserved microbial signatures, Science, 2010 12. J. A. Banks, et al., The Selaginella genome identifies genetic changes associated with the evolution of vascular plants, Science, 2011 13. J. M. Carothers, et al., Model-driven engineering of RNA devices to quantitatively program gene expression, Science, 2011 14. J. A. Dietrich, et al., High-throughput metabolic engineering: advances in small-molecule screening and selection, Annu Rev Biochem, 2010 15. E. J. Steen, et al., Microbial production of fatty-acid-derived fuels and chemicals from plant biomass, Nature, 2010 16. JP Vogel, et al., Genome sequence analysis of the model grass Brachypodium distachyon: insights into grass genome evolution, Nature, 2010 17. S. Yilmaz, et al., Multiple displacement amplification compromises quantitative analysis of metagenomes, Nature Methods, 2010 18. J. D. Keasling, et al., Synthesis: A constructive debate, Nature, 2012 19. P. P. Peralta-Yahya, et al., Microbial engineering for the production of advanced biofuels, Nature, 2012

static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

  • Upload
    doanthu

  • View
    217

  • Download
    2

Embed Size (px)

Citation preview

Page 1: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

1. J. D. Keasling, et al., Metabolic engineering delivers next-generation biofuels, Nature Biotechnology, 2008

2. J. E. Dueber, et al., Synthetic protein scaffolds provide modular control over metabolic flux, Nature Biotechnology, 2009

3. J. Nielsen, et al., Synergies between synthetic biology and metabolic engineering, Nature Biotechnology, 2011

4. R. Knight, et al., Unlocking the potential of metagenomics through replicated experimental design, Nature Biotechnology, 2012

5. R. Dahl, et al., Engineering dynamic pathway regulation using stress-response promoters, nature biotechnology, 2013

6. W. J. Holtz, et al., Engineering Static and Dynamic Control of Synthetic Pathways, Cell, 2010

7. Y. Xiao, et al., Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes, Cell, 2012

8. J. C. Way, et al., Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go, Cell, 2014

9. N. V. Fedoroff, et al., Radically Rethinking Agriculture for the 21st Century, Science, 2010

10. J. D. Keasling, Manufacturing molecules through metabolic engineering, Science, 2010

11. P. C. Ronald, et al., Plant and animal sensors of conserved microbial signatures, Science, 2010

12. J. A. Banks, et al., The Selaginella genome identifies genetic changes associated with the evolution of vascular plants, Science, 2011

13. J. M. Carothers, et al., Model-driven engineering of RNA devices to quantitatively program gene expression, Science, 2011

14. J. A. Dietrich, et al., High-throughput metabolic engineering: advances in small-molecule screening and selection, Annu Rev Biochem, 2010

15. E. J. Steen, et al., Microbial production of fatty-acid-derived fuels and chemicals from plant biomass, Nature, 2010

16. JP Vogel, et al., Genome sequence analysis of the model grass Brachypodium distachyon: insights into grass genome evolution, Nature, 2010

17. S. Yilmaz, et al., Multiple displacement amplification compromises quantitative analysis of metagenomes, Nature Methods, 2010

18. J. D. Keasling, et al., Synthesis: A constructive debate, Nature, 201219. P. P. Peralta-Yahya, et al., Microbial engineering for the production of advanced

biofuels, Nature, 201220. C. C. Liu, et al., An adaptor from translational to transcriptional control enables

predictable assembly of complex regulation, Nature Methods, 201221. V. K. Mutalik, et al., Precise and reliable gene expression via standard transcription

and translation initiation elements, Nat Methods, 201322. V. K. Mutalik, et al., Quantitative estimation of activity and quality for collections of

functional genetic elements, Nat Methods, 201323. J. Kirby, et al., Biosynthesis of plant isoprenoids: perspectives for microbial

engineering, Annual Review of Plant Biology, 200924. H. V. Scheller, et al., Hemicelluloses, Annual Review of Plant Biology, 201025. J. K. Jansson and N. Tas, The microbial ecology of permafrost, Nature Reviews

Microbiology, 2014

Page 2: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

26. J. L. Bennetzen, et al., Reference genome sequence of the model plant Setaria, Nat Biotechnol, 2012

27. F. Zhang, et al., Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids, Nat Biotechnol, 2012

28. W. Reindl, et al., Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities, Energy & Environmental Science, 2011

29. O. Wurtzel, et al., A single-base resolution map of an archaeal transcriptome, Genome Research, 2010

30. K. H. Jung, et al., The Rice Kinase Phylogenomics Database: a guide for systematic analysis of the rice kinase super-family, Trends in Plant Science, 2010

31. Oikawa, et al., Golgi-localized enzyme complexes for plant cell wall biosynthesis, Trends Plant Sci, 2013

32. J. Keasling, From yeast to alkaloids, Nature Chemical Biology, 200833. V. K. Mutalik, et al., Rationally designed families of orthogonal RNA regulators of

translation, Nature Chemical Biology, 201234. J. Nielsen, et al., Engineering synergy in biotechnology, Nature Chemical Biology,

201435. P.C. Ronald, Lab to Farm: Applying Research on Plant Genetics and Genomics to

Crop Improvement, PLoS Biology, 201436. M. J. Dunlop, et al., Engineering microbial biofuel tolerance and export using efflux

pumps, Molecular Systems Biology, 201137. H. H. Chou and J. D. Keasling, Programming adaptive control to evolve increased

metabolite production, Nature Communications, 201338. T. L. Ruegg, et al., An auto-inducible mechanism for ionic liquid resistance in

microbial biofuel production, Nature Communications, 201439. J. K. Jensen, et al., Identification of a xylogalacturonan xylosyltransferase involved in

pectin biosynthesis in Arabidopsis, Plant Cell, 200840. Rautengarten, et al., The interconversion of UDP-arabinopyranose and UDP-

arabinofuranose is indispensable for plant development in Arabidopsis, Plant Cell, 2011

41. J. Liwanag, et al., Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a beta-1,4-galactan beta-1,4-galactosyltransferase, Plant Cell, 2012

42. K. Baerenfaller, et al., Arabidopsis, Taking the Next Step: Building an Arabidopsis Information Portal, Plant Cell, 2012

43. L. Yuan, et al., Allosteric regulation of transport activity by heterotrimerization of Arabidopsis ammonium transporter complexes in vivo, Plant Cell, 2013

44. A. Simmons, et al., Next-generation biomass feedstocks for biofuel production, Genome Biology, 2008

45. S. Miller, et al., EMIRGE: Reconstruction of full length ribosomal genes from microbial community short read sequencing data, Genome Biology, 2011

46. P. P. Peralta-Yahya, et al., Identification and microbial production of a terpene-based advanced biofuel, Nature Communications , 2011

47. F. Zhang, and J. Keasling, Biosensors and their applications in microbial metabolic engineering, Trends in Microbiology, 2011

48. A. Simmons, et al., Advances in modifying lignin for enhanced biofuel production, Current Opinion in Plant Biology , 2010

49. M. Socha, et al., Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose, PNAS, 2014

Page 3: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

50. Rautengarten, et al., The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis, PNAS, 2014

51. J. L. Fortman, et al., Biofuel alternatives to ethanol: pumping the microbial well, Trends in Biotechnology, 2008

52. A. Rennie, et al., Identification of a sphingolipid alpha-glucuronosyltransferase that is essential for pollen function in Arabidopsis, Plant Cell, 2014

53. R. D. Rosengarten and M. L. Nicotra, Model Systems of Invertebrate Allorecognition, Current Biology, 2011

54. P. C. Ronald and K. Shirasu, Front-runners in plant-microbe interactions, Current Opinion in Plant Biology, 2012

55. O. U. Mason, et al., Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill, ISME Journal, 2014

56. E. Graham, et al., Microbes in thawing permafrost: the unknown variable in the climate change equation, ISME Journal, 2012

57. Lauck, et al., Rosetta Backrub-a web server for flexible backbone protein structure modeling and design, Nucleic Acids Research, 2010

58. Densmore, et al., Algorithms for automated DNA assembly, Nucleic Acids Research, 2010

59. R. De Michele, et al., Fluorescent sensors reporting the activity of ammonium transceptors in live cells, eLife, 2013

60. S. K. Lee, et al., Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels, Current Opinion in Biotechnology, 2008

61. Mukhopadhyay, et al., Importance of systems biology in engineering microbes for biofuel production, Current Opinion in Biotechnology, 2008

62. J. M. Carothers, et al., Chemical synthesis using synthetic biology, Current Opinion in Biotechnology, 2009

63. M. J. Dougherty, and F. H. Arnold, Directed evolution: new parts and optimized function, Current Opinion in Biotechnology, 2009

64. M. E. Vega-Sanchez, and P. C. Ronald, Genetic and biotechnological approaches for biofuel crop improvement, Current Opinion Biotechnology, 2010

65. Zhang, et al., Metabolic engineering of microbial pathways for advanced biofuels production, Current Opinion Biotechnology, 2011

66. W. Blanch, et al., Bioprocessing for biofuels, Curr Opin Biotechnol, 201267. S. Yuzawa, et al., Heterologous production of polyketides by modular type I

polyketide synthases in Escherichia coli, Curr Opin Biotechnol, 201268. T. de Rond, et al., High throughput screening of enzyme activity with mass

spectrometry imaging, Curr Opin Biotechnol, 201469. M. Carothers, et al., Selecting RNA aptamers for synthetic biology: investigating

magnesium dependence and predicting binding affinity, Nucleic Acids Res, 201070. P. S. Dehal, et al., MicrobesOnline: an integrated portal for comparative and

functional genomics, Nucleic Acids Research, 201071. P. Durek, et al., PhosPhAt: the Arabidopsis thaliana phosphorylation site database.

An update, Nucleic Acids Research, 201072. T. Bates, et al., GLAMM: Genome-Linked Application for Metabolic Maps, Nucleic

Acids Research, 201173. T. S. Ham, et al., Design, implementation and practice of JBEI-ICE: an open source

biological part registry platform and tools, Nucleic Acids Res, 201274. Chivian, et al., MetaMicrobesOnline: phylogenomic analysis of microbial

communities, Nucleic Acids Res, 2013

Page 4: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

75. S. Kumar, et al., Remodeling the isoprenoid pathway in tobacco by expressing the cytoplasmic mevalonate pathway in chloroplasts, Metabolic Engineering, 2012

76. W. Runguphan and J. D. Keasling, Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals, Metabolic Engineering, 2014

77. R. S. Bart, et al., Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae, PLoS Genet, 2010

78. Y. S. Seo, et al., Towards establishment of a rice stress response interactome, PLoS Genet, 2011

79. Y. J. Tang, et al., Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling, Mass Spectrometry Reviews, 2009

80. R. Lamendella, et al., Omics' of the mammalian gut - new insights into function, Current Opinion in Biotechnology, 2012

81. S. Borglin, et al., Application of phenotypic microarrays to environmental microbiology, Current Opinion in Biotechnology, 2012

82. Eudes, Y., et al., Lignin bioengineering, Current Opinion in Biotechnology, 201483. S. Rodriguez, et al., Production and quantification of sesquiterpenes in

Saccharomyces cerevisiae, including extraction, detection and quantification of terpene products and key related metabolites, Nature Protocols, 2014

84. G. M. Estavillo, et al., Isolation of the plant cytosolic fraction for proteomic analysis, Plant Proteomics: Methods and Protocols, 2013

85. H. T. Parsons, et al., Separation of the plant golgi apparatus and endoplasmic reticulum by free-flow electrophoresis, Plant Proteomics: Methods and Protocols, 2013

86. E. Garcia, et al., Separation and mass spectrometry in microbial metabolomics, Current Opinion in Microbiology, 2008

87. A. Rennie and H. V. Scheller, Xylan biosynthesis, Current Opinion in Biotechnology, 2014

88. J. Bernal, et al., Functional Analysis of the Cellulose Synthase-Like Genes CSLD1, CSLD2, and CSLD4 in Tip-Growing Arabidopsis Cells, Plant Physiology, 2008

89. M. Landau, et al., A cytoplasmically inherited barley mutant is defective in photosystem I assembly due to a temperature-sensitive defect in ycf3 splicing, Plant Physiology, 2009

90. Harholt, et al., Biosynthesis of Pectin, Plant Physiology, 201091. H. Jung, et al., The Submergence Tolerance Regulator Sub1A Mediates Stress-

Responsive Expression of AP2/ERF Transcription Factors, Plant Physiology, 201092. I. Lacayo, et al., Imaging cell wall architecture in single Zinnia elegans tracheary

elements, Plant Physiology, 201093. J. Joshi, et al., MASCP Gator: an aggregation portal for the visualization of

Arabidopsis proteomics data, Plant Physiology, 201194. Y. Manabe, et al., Loss-of-Function Mutation of REDUCED WALL ACETYLATION2 in

Arabidopsis Leads to Reduced Cell Wall Acetylation and Increased Resistance to Botrytis cinerea, Plant Physiology, 2011

95. T. Parsons, et al., Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis, Plant Physiol, 2012

Page 5: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

96. Rautengarten, et al., Arabidopsis Deficient in Cutin Ferulate encodes a transferase required for feruloylation of omega-hydroxy fatty acids in cutin polyester, Plant Physiol, 2012

97. A. Rennie, et al., S. F. Hansen, et al., E. E. Baidoo, et al., M. Z. Hadi, et al., J. D. Keasling, et al., H. V. Scheller, Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases, Plant Physiol, 2012

98. E. Vega-Sanchez, et al., Loss of Cellulose Synthase-Like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties and defense responses in vegetative tissues of rice, Plant Physiology, 2012

99. L. E. Bartley, et al., Overexpression of a BAHD Acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification, Plant Physiol, 2013

100. Y. Manabe, et al., RWA Proteins Play Vital and Distinct Roles in Cell Wall O-Acetylation in Arabidopsis thaliana, Plant Physiology, 2013

101. S. S. Dey, et al., Mutual Information Analysis Reveals Coevolving Residues in Tat That Compensate for Two Distinct Functions in HIV-1 Gene Expression, Journal of Biological Chemistry, 2012

102. H. Pereira, et al., Structure of endoglucanase Cel9A from the thermoacidophilic Alicyclobacillus acidocaldarius, Acta Crystallographica Section D Biological Crystallography, 2009

103. H. Pereira, et al., Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus, Acta Crystallogr D Biol Crystallogr, 2012

104. R. McAndrew, et al., Structure of the OsSERK2 leucine-rich repeat extracellular domain, Acta Crystallogr D Biol Crystallogr, 2014

105. M. DeAngelis, et al., Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia, MBio, 2012

106. S. Datta, et al., Ionic liquid tolerant hyperthermophilic cellulases for biomass pretreatment and hydrolysis, Green Chemistry, 2010

107. Dibble, et al., A facile method for the recovery of ionic liquid and lignin from biomass pretreatment, Green Chemistry, 2011

108. George, et al., The effect of ionic liquid cation and anion combinations on the macromolecular structure of lignins, Green Chemistry, 2011

109. Ouellet, et al., Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production, Green Chemistry, 2011

110. T. Zhang, et al., Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance, Green Chemistry, 2011

111. K. M. Torr, et al., The impact of ionic liquid pretreatment on the chemistry and enzymatic digestibility of Pinus radiata compression wood, Green Chemistry, 2012

112. Groff, et al., Acid enhanced ionic liquid pretreatment of biomass, Green Chemistry, 2013

113. Jian Shi, et al., One-pot ionic liquid pretreatment and saccharification of switchgrass, Green Chemistry, 2013

114. Sun, et al., Understanding pretreatment efficacy of four cholinium and imidazolium ionic liquids by chemistry and computation, Green Chemistry, 2014

115. J. Shi, et al., Understanding the Role of Water during Ionic Liquid Pretreatment of Lignocellulose: Co-solvent or Anti-solvent?, Green Chemistry, 2014

116. Sathitsuksanoh, et al., Lignin fate and characterization during ionic liquid biomass pretreatment for renewable chemicals and fuels production, Green Chemistry, 2014

Page 6: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

117. Knoch, et al., A beta-glucuronosyltransferase from Arabidopsis thaliana involved in biosynthesis of type II arabinogalactan has a role in cell elongation during seedling growth, Plant Journal, 2013

118. J. Lao, et al., The plant glycosyltransferase clone collection for functional genomics, Plant Journal, 2014

119. R. P. McAndrew, et al., Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production, Structure, 2011

120. Y. Kung, et al., Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase, Structure, 2014

121. Chandrasekaran, et al., K. Deng, et al., C. Y. Koh, et al., T. Takasuka, et al., L. F. Bergeman, et al., B. G. Fox, et al., P. D. Adams, et al., A. K. Singh, A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres, Chem Commun (Camb), 2013

122. Y. C. Yeh, et al., Functionalizing bacterial cell surfaces with a phage protein, Chem Commun (Camb), 2013

123. J. Cao, et al., Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases, Molecular Plant, 2008

124. L. Yin, et al., The Cooperative Activities of CSLD2, CSLD3, and CSLD5 Are Required for Normal Arabidopsis Development, Molecular Plant, 2011

125. X. Chen, et al., Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification, Mol Plant, 2013

126. S. Gille, et al., Arabinosylation of a Yariv-Precipitable Cell Wall Polymer Impacts Plant Growth as Exemplified by the Arabidopsis Glycosyltransferase Mutant ray1, Mol Plant, 2013

127. R. Sharma, et al., Recent advances in dissecting stress-regulatory crosstalk in rice, Mol Plant, 2013

128. X. Chen, et al., An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors, Molecular Plant, 2014

129. H. Liepman, et al., Arabidopsis - a powerful model system for plant cell wall research, Plant Journal, 2010

130. Geshi, et al., A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis, Plant J, 2013

131. Y. Tobimatsu, et al., Visualization of Plant Cell Wall Lignification Using Fluorescence-tagged Monolignols, Plant J, 2013

132. J. Y. Zhang, et al., Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.), Plant J, 2013

133. M. Frederix and A. J. Downie, Quorum Sensing: Regulating the Regulators, Advances in Microbial Physiology, Vol 58, 2011

134. S. Okumoto, et al., Quantitative imaging for discovery and assembly of the metabo-regulome, New Phytologist, 2008

135. J. Harholt, et al., Generation of transgenic wheat (Triticum aestivum L.) accumulating heterologous endo-xylanase or ferulic acid esterase in the endosperm, Plant Biotechnology Journal, 2010

136. Eudes, et al., Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification, Plant Biotechnol J, 2012

137. Yang, et al., Engineering secondary cell wall deposition in plants, Plant Biotechnol J, 2013

Page 7: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

138. S. A. Eichorst, et al., Community dynamics of cellulose-adapted thermophilic bacterial consortia, Environ Microbiol, 2013

139. S. D. McClendon, et al., Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions, Biotechnol Biofuels, 2012

140. D. Petersen, et al., Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants, Biotechnol Biofuels, 2012

141. G. Cruz, et al., Impact of high biomass loading on ionic liquid pretreatment, Biotechnol Biofuels, 2013

142. V. Reyes-Ortiz, et al., Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates, Biotechnol Biofuels, 2013

143. M. Socha, et al., Comparison of sugar content for ionic liquid pretreated Douglas-fir woodchips and forestry residues, Biotechnol Biofuels, 2013

144. N. Sun, et al., Production and extraction of sugars from switchgrass hydrolyzed in ionic liquids, Biotechnol Biofuels, 2013

145. Varanasi, et al., Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment, Biotechnol Biofuels, 2013

146. Li, D. Tanjore, et al., Scale-up and evaluation of high solid ionic liquid pretreatment and enzymatic hydrolysis of switchgrass, Biotechnology for Biofuels, 2013

147. N. Uppugundla, et al., A comparative study of ethanol production using dilute acid, ionic liquid and AFEX pretreated corn stover, Biotechnology for Biofuels, 2014

148. J. S. Lupoi, et al., High-throughput prediction of eucalypt lignin syringyl/guaiacyl content using multivariate analysis: a comparison between mid-infrared, near-infrared, and Raman spectroscopies for model development, Biotechnology for Biofuels, 2014

149. M. Konda, et al., Understanding cost drivers and economic potential of two variants of ionic liquid pretreatment for cellulosic biofuel production, Biotechnology for Biofuels, 2014

150. J. M. Gladden, et al., Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community, Biotechnology for Biofuels, 2014

151. X. Gao, et al., Comparison of enzymatic reactivity of corn stover solids prepared by dilute acid, AFEX, and ionic liquid pretreatments, Biotechnology for Biofuels, 2014

152. J. C. Harper, et al., Fabrication and testing of a microneedles sensor array for p-cresol detection with potential biofuel applications, ACS Applied Materials & Interfaces, 2009

153. S. Shaikh, et al., Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein, Analytical Chemistry, 2008

154. Bharadwaj, et al., Microfluidic Glycosyl Hydrolase Screening for Biomass-to-Biofuel Conversion, Analytical Chemistry, 2010

155. M. S. Kent, et al., Study of Enzymatic Digestion of Cellulose by Small Angle Neutron Scattering, Biomacromolecules, 2010

156. Cheng, et al., Neutron Reflectometry and QCM-D Study of the Interaction of Cellulases with Films of Amorphous Cellulose, Biomacromolecules, 2011

157. Cheng, et al., Transition of cellulose crystalline structure and surface morphology of biomass as a function of ionic liquid pretreatment and its relation to enzymatic hydrolysis, Biomacromolecules, 2011

158. Chang, et al., Droplet-based microfluidic platform for heterogeneous enzymatic assays, Lab Chip, 2013

Page 8: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

159. M. Ma, et al., Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases, Metabolic Engineering, 2011

160. M. Redding-Johanson, et al., Targeted proteomics for metabolic pathway optimization: Application to terpene production, Metabolic Engineering, 2011

161. D. Keasling, Synthetic biology and the development of tools for metabolic engineering, Metab Eng, 2012

162. Y. Satoh, et al., Engineering of l-tyrosine oxidation in Escherichia coli and microbial production of hydroxytyrosol, Metab Eng, 2012

163. Zhang, et al., Enhancing fatty acid production by the expression of the regulatory transcription factor FadR, Metab Eng, 2012

164. Alonso-Gutierrez, et al., Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production, Metab Eng, 2013

165. Ozaydin, et al., Carotenoid-based phenotypic screen of the yeast deletion collection reveals new genes with roles in isoprenoid production, Metab Eng, 2013

166. W. Runguphan, et al., Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals, Metab Eng, 2013

167. S. Batth, et al., A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins, Metab Eng, 2014

168. E. B. Goh et al., Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies, Metab Eng, 2014

169. R. W. Haushalter, et al., Production of anteiso-branched fatty acids in Escherichia coli, et al., next generation biofuels with improved cold-flow properties, Metab Eng, 2014

170. B. Lucks, et al., Engineering mRNA structural regulation of transcription using an RNA-sensing riboregulator, Faseb Journal, 2010

171. Butland, et al., Functional interactions of a monothiol glutaredoxin and an iron sulfur cluster carrier protein with the radical SAM enzyme MiaB, Faseb Journal, 2013

172. W. Blanch, et al., Addressing the need for alternative transportation fuels: The Joint BioEnergy Institute, ACS Chemical Biology, 2008

173. D. Keasling, Synthetic biology for synthetic chemistry, ACS Chemical Biology, 2008174. A. Dietrich, et al., A Novel Semi-biosynthetic Route for Artemisinin Production Using

Engineered Substrate-Promiscuous P450(BM3), ACS Chemical Biology, 2009175. Heins RA, et al., Phylogenomically Guided Identification of Industrially Relevant GH1

β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry, ACS Chemical Biology, 2014

176. Deng, et al., Rapid Kinetic Characterization of Glycosyl Hydrolases Based on Oxime Derivatization and Nanostructure-Initiator Mass Spectrometry (NIMS), ACS Chemical Biology, 2014

177. Hajimorad, et al., A framework and model system to investigate linear system behavior in Escherichia coli, J Biol Eng, 2011

178. J. Chen, et al., Device Editor visual biological CAD canvas, J Biol Eng, 2012179. Li, et al., Comparison of dilute acid and ionic liquid pretreatment of switchgrass:

Biomass recalcitrance, delignification and enzymatic saccharification, Bioresource Technology, 2010

180. R. Bharadwaj, et al., High-throughput enzymatic hydrolysis of lignocellulosic biomass via in-situ regeneration, Bioresource Technology, 2011

181. Li, et al., Influence of physico-chemical changes on enzymatic digestibility of ionic liquid and AFEX pretreated corn stover, Bioresource Technology, 2011

Page 9: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

182. J. I. Park, et al., Enzymatic hydrolysis of cellulose by the cellobiohydrolase domain of CelB from the hyperthermophilic bacterium Caldicellulosiruptor saccharolyticus, Bioresource Technology, 2011

183. Oleskowicz-Popiel, et al., Co-production of ethanol, biogas, protein fodder and natural fertilizer in organic farming--evaluation of a concept for a farm-scale biorefinery, Bioresour Technol, 2012

184. G. Papa, et al., Exploring the effect of different plant lignin content and composition on ionic liquid pretreatment efficiency and enzymatic saccharification of Eucalyptus globulus L. mutants, Bioresour Technol, 2012

185. Varanasi, et al., Understanding changes in lignin of Panicum virgatum and Eucalyptus globulus as a function of ionic liquid pretreatment, Bioresour Technol, 2012

186. J. A. Perez-Pimienta, et al., Comparison of the impact of ionic liquid pretreatment on recalcitrance of agave bagasse and switchgrass, Bioresour Technol, 2013

187. P. Oleskowicz-Popiel, et al., Lignocellulosic ethanol production without enzymes--technoeconomic analysis of ionic liquid pretreatment followed by acidolysis, Bioresource Technology, 2014

188. Scullin, et al., Optimization of renewable pinene production from the conversion of macroalgae Saccharina latissima, Bioresour Technol, 2014

189. W. Weckwerth, et al., The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology, Journal of Proteome Research, 2008

190. Chandrasekaran, et al., A Microscale Platform For Integrated Cell-Free Expression And Activity Screening Of Cellulases, Journal of Proteome Research, 2010

191. J. Ito, et al., Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism, Journal of Proteome Research, 2011

192. Meng, et al., UDP-glucose pyrophosphorylase is not rate limiting, but is essential in Arabidopsis, Plant Cell Physiology, 2009

193. Y. Chiu, et al., AtAPY1 and AtAPY2 function as Golgi-localized nucleoside diphosphatases in Arabidopsis thaliana, Plant Cell Physiol, 2012

194. O.P. Cetinkol, et al., Understanding the impact of ionic liquid pretreatment on eucalyptus, Biofuels, 2010

195. Shepherd, et al., Eucalypts as a biofuel feedstock, Biofuels, 2011196. B.A. Simmons, Opportunities and challenges in advanced biofuel production: the

importance of synthetic biology and combustion science, Biofuels, 2011197. B.A. Simmons, Rethinking renewable energy in Japan, Biofuels, 2011198. Jian Shi, et al., Impact of mixed feedstocks and feedstock densification on ionic

liquid pretreatment efficiency, Biofuels, 2013199. Ronald, et al., Plant genetics, sustainable agriculture and global food security,

Genetics, 2011200. Ghosh, et al., A peptide-based method for 13C Metabolic Flux Analysis in microbial

communities, PLoS Comput Biol, 2014201. Rotavera, et al., Photoionization mass spectrometric measurements of initial

reaction pathways in low-temperature oxidation of 2,5-dimethylhexane, J Phys Chem A, 2014

202. Loque, et al., Pore mutations in ammonium transporter AMT1 with increased electrogenic ammonium transport activity, Journal of Biological Chemistry, 2009

203. H. R. Beller, et al., Definitive alkene identification needed for in vitro studies with ole (olefin biosynthesis) proteins, Journal of Biological Chemistry, 2011

Page 10: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

204. Casler, et al., The Switchgrass Genome: Tools and Strategies, Plant Genome, 2011205. Z. Chen, et al., Tracing determinants of dual substrate specificity in glycoside

hydrolase family 5, J Biol Chem, 2012206. P. McAndrew, et al., From soil to structure, a novel dimeric beta-glucosidase

belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis, J Biol Chem, 2013

207. H. J. Joshi, et al., 1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions, Bioinformatics, 2012

208. Kristen M. DeAngelis, et al., Changes in microbial dynamics during long-term decomposition in tropical forests, Soil Biology and Biochemistry, 2013

209. Y. B. Melnichenko, et al., Monitoring Phase Behavior of Sub- and Supercritical CO2 Confined in Porous Fractal Silica with 85% Porosity, Langmuir, 2010

210. G. Cheng, et al., Interactions of endoglucanases with amorphous cellulose films resolved by neutron reflectometry and quartz crystal microbalance with dissipation monitoring, Langmuir, 2012

211. G. Cheng, et al., Effect of ionic liquid treatment on the structures of lignins in solutions: molecular subunits released from lignin, Langmuir, 2012

212. Ronald, and R. Adamchak, The future of sustainable food production, Annals of the New York Academy of Sciences, 2010

213. S. Scullin and L. D. Partridge, Modulation by pregnenolone sulfate of filtering properties in the hippocampal trisynaptic circuit, Hippocampus, 2012

214. Klein-Marcuschamer, et al., Techno-economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre-treatment, Biofuels, Bioproducts and Biorefining, 2011

215. Goldberg, et al., Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies, biofuels, Bioproducts and Biorefining, 2013

216. Daniel Klein-Marcuschamer, et al., Technoeconomic analysis of renewable aviation fuel from microalgae,Pongamia pinnata, and sugarcane, Biofuels, Bioproducts and Biorefining, 2013

217. Golberg, et al., Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies, Biofuels Bioproducts & Biorefining, et al., Biofpr, 2014

218. K. Cox, et al., Environmental life cycle assessment (LCA) of aviation biofuel from microalgae, Pongamia pinnata, and sugarcane molasses, Biofuels Bioproducts & Biorefining, et al., Biofpr, 2014

219. J. Morgan, et al., Estimating molecular masses of petroleum-derived fractions: High mass (> 2000 u) materials in maltenes and asphaltenes from Maya crude oil, Journal of Chromatography A, 2010

220. E. McKee, et al., Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli, Microb Cell Fact, 2012

221. Eudes, et al., Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli, Microb Cell Fact, 2013

222. Bi, et al., Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production, Microbial Cell Factories, 2013

223. O. Welz, et al., Low-temperature combustion chemistry of biofuels: pathways in the initial low-temperature (550 K-750 K) oxidation chemistry of isopentanol, Physical Chemistry Chemical Physics, 2012

Page 11: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

224. J. H. Mack, et al., Investigation of biofuels from microorganism metabolism for use as anti-knock additives, Fuel, 2014

225. Singh, et al., Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass, Biotechnology and Bioengineering, 2009

226. Y. J. Tang, et al., Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism, Biotechnology and Bioengineering, 2009

227. Y. J. Tang, et al., Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain, Biotechnology and Bioengineering, 2009

228. P. Reddy, et al., Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction, Biotechnology and Bioengineering, 2011

229. Sun, et al., Understanding tissue specific compositions of bioenergy feedstocks through hyperspectral Raman imaging, Biotechnology and Bioengineering , 2011

230. J. M. Gladden, et al., Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia, Biotechnol Bioeng, 2012

231. L. Sun, et al., Rapid determination of syringyl: guaiacyl ratios using FT-Raman spectroscopy, Biotechnol Bioeng, 2012

232. J. Zendejas, et al., Characterization of the acylglycerols and resulting biodiesel derived from vegetable oil and microalgae (Thalassiosira pseudonana and Phaeodactylum tricornutum), Biotechnol Bioeng, 2012

233. Klein-Marcuschamer, et al., The challenge of enzyme cost in the production of lignocellulosic biofuels, Biotechnology and Bioengineering, 2012

234. Klein-Marcuschamer, et al., A matter of detail: Assessing the true potential of microalgal biofuels, Biotechnol Bioeng, 2013

235. L. J. Weaver, et al., A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli., Biotechnology and Bioengineering, 2014

236. K. W. George, et al., Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production, Biotechnology and Bioengineering, 2014

237. Sharma, et al., Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice, Plant Molecular Biology, 2011

238. J. Ito, et al., A survey of the Arabidopsis thaliana mitochondrial phosphoproteome, Proteomics, 2009

239. N.L. Taylor, et al., The Arabidopsis thaliana 2-D gel mitochondrial proteome: Refining the value of reference maps for assessing protein abundance, contaminants and post-translational modifications, Proteomics, 2011

240. K. Agrawal, et al., Boosting the globalization of plant proteomics through INPPO: current developments and future prospects, Proteomics, 2012

241. M. Jones, et al., The HUPO initiative on Model Organism Proteomes, iMOP, Proteomics, 2012

242. P. Schrimpf, et al., The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland, Proteomics, 2012

243. P. Singh, et al., Application of targeted proteomics to metabolically engineered Escherichia coli, Proteomics, 2012

Page 12: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

244. E. K. Baidoo and J. D. Keasling, Microbial metabolomics: welcome to the real world!, Metabolomics, 2013

245. R. Beller, et al., Genes Involved in Long-Chain Alkene Biosynthesis in Micrococcus luteus, Applied and Environmental Microbiology, 2010

246. J. Rutherford, et al., Functional genomic study of exogenous n-butanol stress in Escherichia coli, Applied and Environmental Microbiology, 2010

247. R. Chhabra, et al., Generalized Schemes for High-Throughput Manipulation of the Desulfovibrio vulgaris Genome, Applied and Environmental Microbiology, 2011

248. K. M. DeAngelis, et al., PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip, Applied and Environmental Microbiology, 2011

249. M. Gladden, et al., Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass, Applied and Environmental Microbiology, 2011

250. Rezaei, et al., Selection of Conditions for Cellulase and Xylanase Extraction from Switchgrass Colonized by Acidothermus cellulolyticus, Applied Biochemistry and Biotechnology, 2011

251. Eudes, et al., Production of tranilast [N-(3',4'-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae, Applied Microbiology and Biotechnology, 2011

252. Jeffrey A. Dietrich, et al., Transcription Factor-Based Screens and Synthetic Selections for Microbial Small-Molecule Biosynthesis, ACS Synthetic Biology, 2012

253. J. Hillson, et al., j5 DNA Assembly Design Automation Software, ACS Synthetic Biology, 2012

254. H. Chou and J. D. Keasling, Synthetic pathway for production of five-carbon alcohols from isopentenyl diphosphate, Appl Environ Microbiol, 2012

255. Groff, et al., Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars, Appl Environ Microbiol, 2012

256. B. Goh, et al., Engineering of bacterial methyl ketone synthesis for biofuels, Applied and Environmental Microbiology, 2012

257. Juminaga, et al., Modular Engineering of L-Tyrosine Production in Escherichia coli, Applied and Environmental Microbiology, 2012

258. Y. Kung, et al., From fields to fuels: recent advances in the microbial production of biofuels, ACS Synth Biol, 2013

259. Linshiz, et al., PaR-PaR laboratory automation platform, ACS Synth Biol, 2013260. Muller, et al., Engineering of Ralstonia eutropha H16 for Autotrophic and

Heterotrophic Production of Methyl Ketones, Appl Environ Microbiol, 2013261. J. Hillson, j5 DNA assembly design automation, ACS Synthetic Biology, 2013262. Sarria, et al., Microbial Synthesis of Pinene, ACS Synthetic Biology, 2014263. R. M. Phelan, Engineering Terpene Biosynthesis in Streptomyces for Production of

the Advanced Biofuel Precursor Bisabolene, ACS Synthetic Biology, 2014264. Linshiz, et al., PR-PR: Cross-Platform Laboratory Automation System, ACS Synthetic

Biology, 2014265. Javidpour, et al., Biochemical and Structural Studies of NADH-Dependent FabG Used

To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions, Applied and Environmental Microbiology, 2014

266. L. Cote, et al., Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees, BMC Plant Biology, 2010

Page 13: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

267. M. DeAngelis, et al., Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1, Frontiers in Microbial Physiology and Metabolism, 2013

268. Nyyssoenen, et al., Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries, Frontiers in Microbiology, 2013

269. X. Cheng, et al., High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal beta-glucosidase production, Frontiers in Microbiology, 2013

270. S. A. Eichorst, et al., Substrate-Specific Development of Thermophilic Bacterial Consortia Using Chemically Pretreated Switchgrass, Appl Environ Microbiol, 2014

271. J. Kirby, et al., Use of non-ionic surfactants for improvement of terpene production in Saccharomyces cerevisiae, Appl Environ Microbiol, 2014

272. J. Ito, et al., Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry, Analytical Biochemistry, 2014

273. Greving, et al., Acoustic deposition with NIMS as a high-throughput enzyme activity assay, Analytical and Bioanalytical Chemistry, 2012

274. de Rond, et al., Versatile synthesis of probes for high-throughput enzyme activity screening, Anal Bioanal Chem, 2013

275. M. Smith, et al., Fluorescent Lifetime Imaging of Lignin in the Plant Cell Wall, Biophysical Journal, 2010

276. Liu, et al., The N-Terminal Ig Domain of Endoglucanase Cel9A from the Thermoacidophilic Alicyclobacillus Acidocaldarius Enhances Protein Stability, Biophysical Journal, 2010

277. Knierim, et al., TEM/FISH Imaging of Microbial Communities, Biophysical Journal, 2010

278. M. Smith-Moritz, et al., Dependence of Plant Cell Wall Composition and Structure on Cellulose Synthase-Like Knock Out Mutant, Biophysical Journal, 2012

279. F. Nowroozi, et al., Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly, Applied Microbial Biotechnology, 2014

280. M.-K. Kang, et al., Synthetic biology platform of CoryneBrick vectors for gene expression in Corynebacterium glutamicum and its application to xylose utilization, Applied Microbiology and Biotechnology, 2014

281. C.-J. Park, et al., The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice, Plant Science, 2013

282. Geshi, et al., Glycosyltranfserases Involved in the Plant Cell Wall Polysaccharides Biosynthesis, Glycobiology, 2008

283. S. F. Hansen, et al., Structural Comparison of Plant Glycosyltransferases, Glycobiology, 2011

284. K. H. Jung, et al., Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy, Plos One, 2008

285. Shui, et al., Membrane proteomics of phagosomes suggests a connection to autophagy, Proceedings of the National Academy of Sciences, 2008

286. M. Allgaier, et al., Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community, Plos One, 2010

287. Oikawa, et al., An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development, PLoS One, 2010

288. Christen, et al., High-throughput identification of protein localization dependency networks, Proceedings of the National Academy of Sciences, 2010

Page 14: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

289. Y. Cong, et al., 4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement, Proceedings of the National Academy of Sciences, 2010

290. S. R. Chhabra, et al., Towards a Rigorous Network of Protein-Protein Interactions of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough, PLoS One, 2011

291. K. M. DeAngelis, et al., Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil, PLoS ONE , 2011

292. S. Chuck, et al., Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass, Proceedings of National Academy of Sciences, 2011

293. Lee, et al., Genetic dissection of the biotic stress response using a genome-scale gene network for rice, Proceedings of National Academy of Sciences, 2011

294. M. A. Atmodjo, et al., Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex, Proceedings of the National Academy of Sciences, 2011

295. Bokinsky, et al., Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli, Proceedings of the National Academy of Sciences, 2011

296. P. Cetinkol, et al., Structural and chemical characterization of hardwood from tree species with applications as bioenergy feedstocks, PLoS One, 2012

297. Harholt, et al., The glycosyltransferase repertoire of the spikemoss Selaginella moellendorffii and a comparative study of its cell wall, PLoS One, 2012

298. I. Park, et al., A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels, PLoS One, 2012

299. J. Perez-Gil, et al., Mutations in Escherichia coli aceE and ribB genes allow survival of strains defective in the first step of the isoprenoid biosynthesis pathway, PLoS One, 2012

300. K. Sharma, et al., A genome-wide survey of switchgrass genome structure and organization, PLoS One, 2012

301. Sogaard, et al., GO-PROMTO illuminates protein membrane topologies of glycan biosynthetic enzymes in the Golgi apparatus of living tissues, PLoS One, 2012

302. Chiniquy, et al., XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan, Proc Natl Acad Sci U S A, 2012

303. J. Khudyakov, et al., Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus SCF1, Proceedings of National Academy of Sciences, 2012

304. Ying Xu, et al., Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass, PLoS One, 2013

305. J. A. Rodrigues, et al., Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm, Proceedings of the National Academy of Sciences of the United States of America, 2013

306. P. Reddy, et al., Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses, PLoS One, 2013

307. T. Parsons, et al., Golgi enrichment and proteomic analysis of developing Pinus radiata xylem by free-flow electrophoresis, PLoS One, 2013

308. J. Joshua, et al., Functional characterization of the origin of replication of pRN1 from Sulfolobus islandicus REN1H1, PLoS One, 2013

Page 15: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

309. Z. Chen, et al., Improved activity of a thermophilic cellulase, Cel5A, from Thermotoga maritima on ionic liquid pretreated switchgrass, PLoS One, 2013

310. Golberg, et al., Cloud-enabled microscopy and droplet microfluidic platform for specific detection of Escherichia coli in water, PLoS One, 2014

311. E. Garcia and J. D. Keasling, Kinetics of Phosphomevalonate Kinase from Saccharomyces cerevisiae, PLoS One, 2014

312. Frederix, et al., Development of a Native Escherichia coli Induction System for Ionic Liquid Tolerance, PLoS One, 2014

313. J. Dougherty, et al., Cellulosic Biomass Pretreatment and Sugar Yields as a Function Of Biomass Particle Size, PLoS One, 2014

314. P. Peralta-Yahya, et al., Advanced biofuel production in microbes, Biotechnology Journal, 2010

315. W. Blanch, et al., Biomass deconstruction to sugars, Biotechnology Journal, 2011316. L. Sun, et al., Unveiling high-resolution, tissue specific dynamic changes in corn

stover during ionic liquid pretreatment, Rsc Advances, 2013317. M. Rhee, et al., Versatile on-demand droplet generation for controlled

encapsulation, Biomicrofluidics, 2014318. De Michele, et al., Ammonium and urea transporter inventory of the selaginella and

physcomitrella genomes, Front Plant Sci, 2012319. F. Hansen, et al., Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF

Families, Front Plant Sci, 2012320. T. Parsons, et al., Proteomic dissection of the Arabidopsis Golgi and trans-Golgi

network, Front Plant Sci, 2012321. L. Heazlewood, et al., The Green proteome: challenges in plant proteomics,

Frontiers in Plant Proteomics, 2011322. Wipf, et al., Amino acid transporter inventory of the Selaginella genome, Frontiers in

Plant Science, 2012323. Chiniquy, et al., Three novel rice genes closely related to the Arabidopsis IRX9,

IRX9L, and IRX14 genes and their roles in xylan biosynthesis, Frontiers in Plant Science, 2013

324. Rita Sharma, et al., Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research, Frontiers in Plant Science, 2013

325. W. Mann, et al., MASCP gator: an overview of the Arabidopsis proteomic aggregation portal, Frontiers in Plant Science, 2013

326. W. Carroll, et al., Managing the green proteomes for the next decade of plant research, Frontiers in Plant Science, 2013

327. Ito, et al., The Arabidopsis cytosolic proteome: the metabolic heart of the cell, Frontiers in Plant Science, 2014

328. Lee, et al., Characterization of wastewater treatment plant microbial communities and the effects of carbon sources on diversity in laboratory models, PLoS One, 2014

329. S. Parreiras, et al., Engineering and Two-Stage Evolution of a Lignocellulosic Hydrolysate-Tolerant Saccharomyces cerevisiae Strain for Anaerobic Fermentation of Xylose from AFEX Pretreated Corn Stover, PLoS One, 2014

330. Y. Ren, et al., Site-directed mutagenesis of IRX9, IRX9L and IRX14 proteins involved in xylan biosynthesis: glycosyltransferase activity is not required for IRX9 function in Arabidopsis, PLoS One, 2014

331. T. Yu, et al., Bioinformatic processing to identify single nucleotide polymorphism that potentially affect Ape1 function, Mutation Research, 2010

Page 16: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

332. L. Woo, et al., Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils, Systematic and applied microbiology, 2014

333. Barcon, J. Alonso-Gutierrez, et al., Molecular and physiological approaches to understand the ecology of methanol degradation during the biofiltration of air streams, Chemosphere, 2012

334. Liu, et al., Molecular simulations provide new insights into the role of the accessory immunoglobulin-like domain of Cel9A, FEBS Letters, 2010

335. Y. B. Melnichenko, et al., Accessibility of pores in coal to methane and carbon dioxide, Fuel, 2012

336. R. Arora, et al., Monitoring and Analyzing Process Streams Towards Understanding Ionic Liquid Pretreatment of Switchgrass (Panicum virgatum L.), Bioenergy Research, 2010

337. C. R. Brennan, et al., Recovery of Sugars from Ionic Liquid Biomass Liquor by Solvent Extraction, Bioenergy Research, 2010

338. J. Cao, et al., A Survey of Databases for Analysis of Plant Cell Wall-Related Enzymes, Bioenergy Research, 2010

339. M. DeAngelis, et al., Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities, Bioenergy Research, 2010

340. Rautengarten, et al., A Simple Method for Enzymatic Synthesis of Unlabeled and Radiolabeled Hydroxycinnamate-CoA, BioEnergy Research, 2010

341. V. Scheller, et al., The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance, BioEnergy Research, 2010

342. Chenlin Li, et al., Comparing the Recalcitrance of Eucalyptus, Pine, and Switchgrass Using Ionic Liquid and Dilute Acid Pretreatments, Bioenergy Research, 2012

343. Jason S. Lupoi, et al., Assessment of Lignocellulosic Biomass Using Analytical Spectroscopy: an Evolution to High-Throughput Techniques, Bioenergy Research, 2013

344. S. Lupoi, et al., Assessment of Lignocellulosic Biomass Using Analytical Spectroscopy: an Evolution to High-Throughput Techniques, Bioenergy Research, 2014

345. H. Liu, et al., Understanding the interactions of cellulose with ionic liquids: a molecular dynamics study, Journal of Physical Chemistry B, 2010

346. H. Liu, et al., Molecular Dynamics Study of Polysaccharides in Binary Solvent Mixtures of an Ionic Liquid and Water, Journal of Physical Chemistry B, 2011

347. H. Liu, et al., Simulations Reveal Conformational Changes of Methylhydroxyl Groups during Dissolution of Cellulose I(beta) in Ionic Liquid 1-Ethyl-3-methylimidazolium Acetate, J Phys Chem B, 2012

348. Cheng, et al., Impact of Ionic Liquid Pretreatment Conditions on Cellulose Crystalline Structure Using 1-Ethyl-3-methylimidazolium Acetate, Journal of Physical Chemistry B, 2012

349. Harholt, et al., ARAD proteins associated with pectic Arabinan biosynthesis form complexes when transiently overexpressed in planta, Planta, 2012

350. Orfila, et al., Expression of mung bean pectin acetyl esterase in potato tubers: effect on acetylation of cell wall polymers and tuber mechanical properties, Planta, 2012

351. Stoppel and J. Meurer, Complex RNA metabolism in the chloroplast: an update on the psbB operon, Planta, 2013

352. N. Mac Dowell, et al., New Experimental Density Data and Soft-SAFT Models of Alkylimidazolium ([CnC1im](+)) Chloride (Cl(-)), Methylsulfate ([MeSO4](-)), and

Page 17: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

Dimethylphosphate ([Me2PO4](-)) Based Ionic Liquids, Journal of Physical Chemistry: B, 2014

353. H. Pereira, et al., Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima, Journal of Structural Biology, 2010

354. J. Steen, et al., Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol, Microbial Cell Factories, 2008

355. A. Simmons, Synthetic enzymes: catalysis on demand, Microbial Biotechnology, 2011

356. Yu, et al., Probing conformational changes in Ape1 during the progression of base excision repair, Biochemistry, 2010

357. Yuzawa, et al., Construction of a part of a 3-hydroxypropionate cycle for heterologous polyketide biosynthesis in Escherichia coli, Biochemistry, 2012

358. Yuzawa, et al., Broad substrate specificity of the loading didomain of the lipomycin polyketide synthase, Biochemistry, 2013

359. Hagen, S., et al., In Vitro Analysis of Carboxyacyl Substrate Tolerance in the Loading and First Extension Modules of Borrelidin Polyketide Synthase, Biochemistry, 2014

360. Muyzer, et al., Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7, Standards in Genomic Sciences, 2011

361. Chertkov, et al., Complete genome sequence of Tolumonas auensis type strain (TA 4T), Standards in Genomic Sciences, 2011

362. DeAngelis, et al., Complete genome sequence of Enterobacter lignolyticus SCF1, Standards in Genomic Sciences, 2011

363. DeAngelis, et al., Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron, Standards in Genomic Sciences, 2013

364. Y. Satoh, et al., Engineering of a tyrosol-producing pathway, utilizing simple sugar and the central metabolic tyrosine, in Escherichia coli, J Agric Food Chem, 2012

365. M. Lafreniere, et al., Multiplexed extraction and quantitative analysis of pharmaceuticals from DBS samples using digital microfluidics, Bioanalysis, 2014

366. Sarkar, et al., Plant cell walls throughout evolution: towards a molecular understanding of their design principles, Journal of Experimental Botany, 2009

367. Simmons, Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter, Applied Soil Ecology, 2013

368. C. S. Hastrup, et al., Differences in crystalline cellulose modification due to degradation by brown and white rot fungi, Fungal Biology, 2012

369. M. Winger, et al., Secretome analysis of the thermophilic xylanase hyper-producer Thermomyces lanuginosus SSBP cultivated on corn cobs, J Ind Microbiol Biotechnol, 2014

370. S. Kumar, et al., Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans, BMC Systems Biology, 2011

371. Y. Lee, et al., Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging, Biotechniques, 2010

372. Woo, et al., Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil, Genome Announcements, 2014

373. J. C. Bergmann, et al., Discovery of two novel beta-glucosidases from an Amazon soil metagenomic library, FEMS Microbiology Letters, 2014

374. Y. J. Tang, et al., Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses, Journal of Bacteriology, 2009

Page 18: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

375. Young, et al., Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium, Journal of Bacteriology, 2010

376. J. Joshua, et al., Absence of Diauxie during Simultaneous Utilization of Glucose and Xylose by Sulfolobus acidocaldarius, Journal of Bacteriology, 2011

377. Bokinsky, et al., HipA-Triggered Growth Arrest and beta-Lactam Tolerance in Escherichia coli Are Mediated by RelA-Dependent ppGpp Synthesis, J Bacteriol, 2013

378. H. Chou, et al., Direct calibration of PICKY-designed microarrays, BMC Bioinformatics, 2009

379. Ouellet, et al., A rapid and inexpensive labeling method for microarray gene expression analysis, BMC Biotechnology, 2009

380. J. Dougherty, et al., Glycoside Hydrolases from a targeted Compost Metagenome, activity-screening and functional characterization, BMC Biotechnol, 2012

381. Deng, et al., Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme, Rapid Commun Mass Spectrom, 2012

382. A.M. Smith-Moritz, et al., Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy, Plant Methods, 2011

383. Klein-Marcuschamer and H. W. Blanch, Survival of the Fittest: An Economic Perspective on the Production of Novel Biofuels, AiChe Journal, 2013

384. Frear, et al., Biogas potential and microbial population distributions in flushed dairy manure and implications on anaerobic digestion technology, Journal of Chemical Technology and Biotechnology, 2011

385. Sathitsuksanoh, et al., New lignocellulose pretreatments using cellulose solvents: a review, Journal of Chemical Technology and Biotechnology, 2013

386. E. Achyuthan, et al., Spectroscopic High Throughput Screening of Laccase-Catalyzed p-Cresol Oxidation, Combinatorial Chemistry & High Throughput Screening, 2009

387. H. Jung, et al., Analysis of Alternatively Spliced Rice Transcripts Using Microarray Data, Rice, 2009

388. Peijian Cao, et al., The Rice Oligonucleotide Array Database: an atlas of rice gene expression, Rice, 2012

389. Yang, et al., Monolignol Transporters and Cell Wall Oxidases Screens, Plant Biology, 2009

390. Eudes, et al., Synthesis of phenylpropanoid-esters and -amides in Arabidopsis thaliana to engineer a cleavable lignin, Plant Biology, 2009

391. W. Singer, et al., Enrichment, Isolation and Characterization of Fungi Tolerant to 1-Ethyl-3-Methylimadazolium Acetate, Journal of Applied Microbiology, 2011

392. P. Reddy, et al., Thermophilic enrichment of microbial communities in the presence of the ionic liquid 1-ethyl-3-methylimidazolium acetate, J Appl Microbiol, 2012

393. W. Simmons, et al., , Effect of inoculum source on the enrichment of microbial communities on two lignocellulosic bioenergy crops under thermophilic and high-solids conditions, Journal of Applied Microbiology, 2014

394. K. E. Achyuthan, et al., Spectroscopic Analyses of the Biofuels-Critical Phytochemical Coniferyl Alcohol and Its Enzyme-Catalyzed Oxidation Products, Molecules, 2009

395. K. E. Achyuthan, et al., Supramolecular Self-Assembled Chaos: Polyphenolic Lignin's Barrier to Cost-Effective Lignocellulosic Biofuels, Molecules, 2010

396. K. E. Achyuthan, et al., Hitherto Unrecognized Fluorescence Properties of Coniferyl Alcohol, Molecules, 2010

Page 19: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

397. Yuzawa, et al., Enzyme analysis of the polyketide synthase leads to the discovery of a novel analog of the antibiotic alpha-lipomycin, Journal of Antibiotics, 2014

398. Y. Verhertbruggen, et al., Mannan synthase activity in the CSLD family, Plant Signaling & Behavior, 2011

399. Vega-Sanchez, et al., Abundance of mixed linkage glucan in mature tissues and secondary cell walls of grasses, Plant Signal Behav, 2013

400. L. Petersen, et al., Assay and heterologous expression in Pichia pastoris of plant cell wall type-II membrane anchored glycosyltransferases, Glycoconjugate Journal , 2009

401. K. L. Keller, et al., Methods for engineering sulfate reducing bacteria of the genus desulfovibrio, Methods in Enzymology, 2011

402. Y. J. Tang, et al., Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations, Biotechnol Prog, 2009

403. D. Marner, 2nd, et al., Enzyme immobilization via silaffin-mediated autoencapsulation in a biosilica support, Biotechnology Progress, 2009

404. S. Shaikh, et al., Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein, Biotechnology Progress, 2010

405. W. Simmons, et al., Bacillus coagulans tolerance to 1-ethyl-3-methylimidazolium-based ionic liquids in aqueous and solid-state thermophilic culture, Biotechnology Progress, 2014

406. Heather L. Szmidt-Middleton, et al., Utilizing a highly responsive gene, yhjX, in E. coli based production of 1,4-butanediol, chemical engineering science, 2013

407. Han Min Woo, et al., Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene, chemical engineering science, 2013

408. Klein-Marcuschamer, et al., Technoeconomic analysis of biofuels: A wiki-based platform for lignocellulosic biorefineries, Biomass & Bioenergy, 2010

409. M. Paap, et al., Biochemical production of ethanol and fatty acid ethyl esters from switchgrass: A comparative analysis of environmental and economic performance, Biomass & Bioenergy, 2013

410. Seema Singh, et al., Understanding the impact of ionic liquid pretreatment on cellulose and lignin via thermochemical analysis, Biomass and Bioenergy, 2013

411. E. Vickers, et al., D. Klein-Marcuschamer, et al., J. O. Kromer, Examining the feasibility of bulk commodity production in Escherichia coli, Biotechnology Letters, 2012

412. Galdzicki, K. P., et al., The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology, Computational Biology, 2014

413. Christensen, et al., Characterization of the primary cell walls of seedlings of Brachypodium distachyon - A potential model plant for temperate grasses, Phytochemistry, 2010

414. Xie, J. Kirby and J. D. Keasling, Functional characterization of four sesquiterpene synthases from Ricinus communis (Castor bean), Phytochemistry, 2012

415. W. Simmons, et al., Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter, Applied Soil Ecology, 2014

416. Christensen, et al., Regulation of (1,3, et al., 1,4)-β-D-glucan synthesis in developing endosperm of barley lys mutants, Journal of Cereal Science, 2012

Page 20: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

417. Linshiz, et al., The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology, Perspect Biol Med, 2012

418. Sharma, tools for developing glycosyl-transferase assays and methods for xylan profiling in plants, pharmaceutical biology, 2012

419. McInerney, et al., Error Rate Comparison during Polymerase Chain Reaction by DNA Polymerase, Mol Biol Int, 2014

420. E. Baidoo, et al., Mass spectrometry-based microbial metabolomics, Methods Mol Biol, 2012

421. S. Batth, et al., Targeted proteomics for metabolic pathway optimization, Methods Mol Biol, 2012

422. R. Beller, et al., Genetic manipulation of the obligate chemolithoautotrophic bacterium Thiobacillus denitrificans, Methods Mol Biol, 2012

423. T. Parsons, et al., Separation of the plant golgi apparatus and endoplasmic reticulum by free-flow electrophoresis, Methods in Molecular Biology, 2014

424. M. Estavillo, et al., Isolation of the plant cytosolic fraction for proteomic analysis, Plant Proteomics: Methods and Protocols, 2014

425. K.-H. Jung, et al., Genome-wide Identification and Analysis of Early Heat Stress Responsive Genes in Rice, Journal of Plant Biology, 2012

426. Pradhan Mitra, et al., Histochemical Staining of Arabidopsis thaliana Secondary Cell Wall Elements, Journal of Visualized Experiments, JOVE, 2014

427. Keasling, Engineering Microorganisms with Plant-derived Genes to Produce Drugs and Fuels, In Vitro Cellular & Developmental Biology Animal, 2010

428. W. Mann, et al., Proteome coverage of the model plant Arabidopsis thaliana: implications for shotgun proteomic studies, J Proteomics, 2013

429. Ito, et al., The Role of Proteomics in the Development of Cellulosic Biofuels, Current Proteomics, 2010

430. E. Bartley, et al., Plant and microbial research seeks biofuel production from lignocellulose, California Agriculture, 2009

431. B.A. Simmons, et al., Ionic liquid pretreatment, Chemical Engineering Progress, 2010

432. M.S. Kent, et al., Effect of Agitation/Flow on the Enzymatic Digestion of Cellulose: a Structural Study by SANS, Polymer Preprints, ACS-PMSE symposium on Small Angle Neutron Scattering from Polymers and Complex Fluids, 238th ACS National Meeting, Washington DC, Aug 16-20, 2009. , 2009

433. Geshi, et al., Toward tailored synthesis of functional polysaccharides in plants, Foods for Health in the 21st Century: A Road Map for the Future, 2010

434. S. Lalonde, et al., A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2, Frontiers in Physiology, 2010

435. J. Han, et al., Chemical profiling of the plant cell wall through Raman microspectroscopy in 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, IEEE ISBI, 2010

436. Yang, et al., Characteristics of Isopentanol as a Fuel for HCCI Engines, Society of Automobile Engineers International Journal of Fuels and Lubricants, 2010

437. M.J. Dunlop, et al., A model for improving microbial biofuel production using a synthetic feedback loop, Synthetic and Systems Biology, 2010

438. C.J. Petzold, et al., Metabolic engineering of E.coli for the production of a precursor to artemisinin, an anti-malarial drug, The Manual of Industrial Microbiology and Biotechnology, 2010

Page 21: static-content.springer.com10.1007/s121…  · Web viewSingh, A universal flow cytometry assay for screening ... materials in maltenes and asphaltenes from Maya crude oil, ... welcome

439. Anil Wipat, et al., Synthetic Biology Open Language (SBOL) Version 1.0.0, BioBricks Foundation Request for Comments, 2011

440. Varanasi, et al., Quantifying Bio-Engineering: The Importance of Biophysics in Biofuel Research, Biofuel's Engineering Process Technology, 2011

441. Datta, et al., Cellulases and Hemicellulases for Biomass Degradation: An Introduction, Chemical and Biochemical Catalysis for Next Generation Biofuels, 2011

442. Loque, et al., Biomass Availability and Sustainability for BioFuels, Chemical and Biochemical Catalysis for Next Generation Biofuels, 2011

443. B.A. Simmons, Introduction to Catalysis for Biofuels, Chemical and Biochemical Catalysis for Next Generation Biofuels, 2011

444. S.R. Chhabra, et al., The Biological Basis | Metabolic Design and Control for Production in Prokaryotes, Comprehensive Biotechnology, 2011

445. N.J. Hillson, DNA Assembly Method Standardization for Synthetic Biomolecular Circuits and Systems, Design and Analysis of Biomolecular Circuits: Engineering Approaches to Systems and Synthetic Biology, 2011

446. J. D. Keasling, Joint BioEnergy Institute, Industrial Biotechnology, 2011447. S. Lee, et al., BglBrick vectors and datasheets, et al., a synthetic biology platform

for gene expression, Journal of Biological Engineering , 2011448. Klein-Marcuschamer, et al., Biofuel Economics, Plant Biomass Conversion, 2011449. B.A. Simmons, Bioenergy from Plants and Plant Residues, Plant Biotechnology and

Agriculture - Prospects for the 21st Century, 2011450. Sakuragi, et al., Visual mapping of cell wall biosynthesis, The Plant Cell Wall:

Methods and Protocols, 2011451. Reindl, et al., Nanostructure-initiator mass spectrometry (NIMS) for the analysis of

enzyme activities, Curr protoc chem biol, 2012452. Patanjali Varanasi, et al., Mechanical Stress Analysis as a Method to Understand the

Impact of Genetically Engineered Rice and Arabidopsis Plants, Industrial Biotechnology, 2012

453. B.J Rutherford, et al., Engineering Stress Tolerance in Microbial Systems for Bioproduction of Fuels, Microbial Biotechnology: Energy and Environment, 2012

454. Mukhopadhyay, et al., Control of Stress Tolerance in Bacterial Host Organisms for Bioproduction of Fuels, Microbial Stress Tolerance: From Genomics to Biofuels, 2012

455. T. Parsons, et al., The current state of the Golgi proteomes, Proteomics - Applications in Biology, 2012

456. Bokinsky, et al., Synthetic biology of microbial biofuel production: From enzymes to pathways to organisms, Synthetic Biologu: Tools and Applications, 2012

457. Goldberg, et al., Distributed marine biorefineries for developing economies., , 2012458. L. Heazlewood, et al., Proteomics - Applications in Biology, , 2012459. Seema Singh, et al., Ionic Liquid Pretreatment: Mechanism, Performance, and

Challenges, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, 2013

460. R. E. Paull, et al., Lotus Cell Walls and the Genes Involved in its Synthesis and Modification, Tropical Plant Biology, 2013

461. N.J. Hillson, J5 DNA Closing and Assembly Methods, Methods and Protocols, 2014462. Chandrasekaran and A. K. Singh, One-Pot, Microscale Cell-Free Enzyme Expression

and Screening, Cell-Free Protein Synthesis: Methods and Protocols, 2014