Upload
others
View
3
Download
0
Embed Size (px)
Citation preview
( ) ( ) ( )
( ) ( ) ( ) ( )
( ) ( )
( ) ( ) ( )
( ) ( ) ( )
( ) ( )
From Low-D Component Functions to D-reduction
( ) ( ) ( )
( ) ( ) ( )
2
1 2 1 2
1 2
(1) (2)
1 2 0
1 1
( )
, ,..., 12... 1 2
, ,...,
, ,... , ...
, ,..., ... , ,...,
D
nD
n n
n
CD
D i i ij i j
i i j
Cn D
i i i i i i D D
i i i
f x x x f f x f x x
f x x x f x x x
= < =
= + + + +
+ + +
∑ ∑
∑
Terms dependent on subsets of coordinates
( )
( ) ( )
( ) ( ) ( ) ( )
0
0
0
| ,
, , |
i i i
ij i j i j i i j j
f f y
f x f x y f
f x x f x x y f x f x f
=
= −
= − − −
…
Multimode: slices don't minimise global error, separate sample needed for each term
HDMR: one sample, but costly integrals
( ) ( ) ( )2
.D
HDMR
K
f f dµ − ∫ x x x
Using subsets of original coordinated leads to a combinatorial explosion of terms
Using subsets of original coordinated leads to a combinatorial explosion of terms
( ) ( ) ( )
( ) ( )
2 1,
0
,D
Dij
ij i j k k
kKk i j
i i j j
f x x w x f d
f x f x f
− =≠
=
− − −
∏∫ x x
No integrals: NN+HMDR, max order=f(sampling density): Manzhos, Carrington, J. Chem. Phys. 125, 084109 (2006)
No integrals: NN+HMDR, max order=f(sampling density): Manzhos, Carrington, J. Chem. Phys. 125, 084109 (2006)
( ) ( ) ( ) ( )
( ) ( )
( ) ( ) ( ) ( )
( ) ( )
Component Functions:Neural Networks
Represent a multi-D function with a small no. of simple 1D functions
●Math: universal approximator
●Chem: System/molecule-independent PES representation method in a dynamics-friendly form
f i
NN x1 , x2 , ... , x Dd=∑q=1
N
cq wqxdq
x =ex: f i
NN x=∑q=1
N
cq∏j=1
D
ew
qjx
jAny non-
linear function
Quadrature-friendly NN: Manzhos, Carrington, J. Chem. Phys. 125, 194105 (2006)Quadrature-friendly NN: Manzhos, Carrington, J. Chem. Phys. 125, 194105 (2006)
Fitting Algorithm
Algorithm: Manzhos, Yamashita, Carrington, Comput. Phys. Comm. 180, 2002 (2009) Algorithm: Manzhos, Yamashita, Carrington, Comput. Phys. Comm. 180, 2002 (2009)
# of y's < D = D-reduction
# of y's < D = D-reduction
Chemisorbed State
Intermolecular bonding weakened to favor dissociation
Free N2O
1621 cm-1
331 cm-1581 cm-1
997 cm-1
-21058
-21057.9
-21057.8
-21057.7
-21057.6
-21057.5
-21057.4
-21057.3
-21057.2
7.1 8.1 9.1 10.1
Ncx
E, e
V
Dissociation into N2+O
Chemisorbed state-0.53 eV
physisorbed state -0.23 eV
-21060
-21059.5
-21059
-21058.5
-21058
-21057.5
1 1.5 2 2.5 3 3.5
ON, A
E, eV
Barrier ~0.2 eVMin 9 coordsMin 9 coords
Unbiased Sampling in 15D
Rij
-1
●15 physically-motivated coordinates: asymptotics, permutational invariance
●Unbiased sampling of all configurations
●Much complicated fit
●15 physically-motivated coordinates: asymptotics, permutational invariance
●Unbiased sampling of all configurations
●Much complicated fit
D-reduction
D-reduction
2119
1178 1138
936 876 879 826 884
3504
0
1000
2000
3000
3 4 6 7 8 9 10 12 15
d
test set m
ae
, cm
-1
D-reduction allows for preservation of the density of sampling and ease of fit while using the best coordinates even as they expand D
D-reduction allows for preservation of the density of sampling and ease of fit while using the best coordinates even as they expand D
● 4,300 unique fitting data
● 1,845 unique test data
● 61,450 total symmetry augmented points
● 1.75 data per dimension
Manzhos, Yamashita, Surf. Sci. submittedManzhos, Yamashita, Surf. Sci. submitted
Dissociative Adsorption
100200
350500
7501000
50K
300K
600K
0
20
40
60
80
100
Pdiss, %
Ekin, meVT
50K
300K
600K
D-reduction of the Configuration Space
Brown et al., JCP 129, 064118 (2008)1,2,4-trifluorocyclooctane
Linear NN D-reductionN
2O/Cu(001)
Linear NN D-reductionN
2O/Cu(001)
Is D-reduction Useful? Or Why Linear Is Good
( ) ( ) ( )( ) ( )*,n ij mdx x V q x q x xΨ Ψ∫� � � � � � �
i j
1. Choice of neurons
( )1 2
1 1
1 1
, exp
np p
N d
n np p n
n p
dNw x
n
n p
f q q c w x b
c e
= =
= =
= + =
′=
∑ ∑
∑ ∏
( ) ( )*iconst x
i m i n idx x e xγ γ⋅
∫
2. Integration in redundant coordinates
dx�
is a d-form of exterior algebra:
1 2 ... ddx dx dx dx= ∧ ∧ ∧�
,
' ' '
1 2
1 1 1
...d d d
k k k k dk k
k k k
dx b dq b dq b dq= = =
= ∧ ∧ ∧ ∑ ∑ ∑
�
dx →∫�
Several d-dimensional integrals in q →�
( ) ( ) ( ) ( )
( ) ( ) ( ) ( ) ( )* *,
i j
i j m i m j
j j
ij i j n i n j
dq dq q q
V q q q q
γ γ
γ γ
×
×∫ Manzhos, Carrington, J. Chem. Phys. 125, 194105 (2006)
Manzhos, Carrington, J. Chem. Phys. 125, 194105 (2006)
Conclusions● PES allow for speedy modelling of high-D systems -
molecules on surfaces/particles
● For D>6, the configuration space is sparsely sampled (2-3 data/D) even with ~104-5 data = no PES exists for most systems
● Using NN-based low-D functions provides universality, simplicity, and tractability
● D-reduction increases the effective density of sampling w/out neglecting degrees of freedom
Thanks JSPS
for funding
Thanks JSPS
for funding