1
Conclusions On the basis of obtained results perhydroisoquinoline 9 was chosen as a lead compound for further development and optimiza- tion of 5-HT 7 R selective ligands. Moreover, since the recent data have already provided interesting insights regarding 5-HT7 7 R antagonism as beneficial component of therapeutic action of numerous antipsychotic drugs (amisulpride and lurasidone) we also selected benzisoxazole piperazine derivative 8 to develop the second series of potential multireceptoral agents with high 5-HT 7 R affinity. The present investigation has also confirmed the usefulness of our 5-HT 7 R model in designing active 5-HT 7 R ligands with purpose- ful selectivity showing supporting role of docking results during lead identification. Figure 2. Surface of the 5-HT 7 R binding site with docked selective an- tagonist SB 269970 (2). Two binding pockets: I – between TMHs 3–6 (red) and II – between TMHs 7–3 (blue) are, indicated. Common anchor- ing point (Asp3.32) in magenta. K i [nM] Structure 5-HT 7 5-HT 1A 5-HT 2A 5-HT 6 D 2 N N O N O O NAN-190 a 128 0.6 182 NT 47 N N O N N O O 6 128 24 NT 874 195 N N N N O S O O H 7 13 299 44 341 691 S N N N O N O O 8 11 104 19 393 12 S N N O O 9 44 2966 6000 >10 000 6970 S N N O O 10 407 10 050 9000 >10 000 >10 000 S N N N O O O H 11 >5000 >10 000 NT >10 000 NT S O O N N N H 12 >5000 >10 000 NT >10 000 NT Searching of novel leads for 5-HT 7 receptor antagonists - selectivity hints from molecular modeling studies Ryszard Bugno a , Beata Duszyńska a , Grzegorz Satala a , Stefan Mordalski a , Piotr Chmielarz b , Irena Nalepa b , and Andrzej J. Bojarski a a Department of Medicinal Chemistry, Institute of Pharmacology, Polish Academy of Sciences, 12 Smetna Street, 31-343 Kraków, Poland b Department of Brain Biochemistry, Institute of Pharmacology, Polish Academy of Sciences, 12 Smętna Street, 31-343 Kraków, Poland Objective To identify new 5-HT 7 R antagonists as potential antidepressant agents, a pilot set of structurally diversified compounds was designed, synthesized, and binding affinities for 5-HT 7 R and other therapeutically important: 5-HT 1A R, 5-HT 2A R, 5-HT 6 R as well as opamine D 2 receptors, were assessed. In addition, docking studies using the previously developed 5-HT 7 R homology models, 1 were used to interpret affinity and selectivity data. References: [1] Kolaczkowski M. et al. J. Med. Chem. 2006, 49(23), 6732-41. [2] Perrone R. et al. J. Med. Chem. 2003, 46(4), 646-9. [3] Raubo P. et al. Bioorg. Med. Chem. Lett. 2006, 16(5), 1255-8. Acknowledgments This study was partly supported by a grant PNRF-103-Al-1/07 from Norway through the Norwegian Financial Mechanism. In vitro results The affinities of compounds 612 for 5-HT 7 , 5-HT 1A 5-HT 2A , 5-HT 6 , and dopamine D 2 receptors were determined using competi- tive radioligand binding assays according to previously published procedures (table 1). Based on presented affinity and selectivity, compounds 8 and 9 were selected for testing their functional behaviour using a LANCE cAMP assay, where both displayed antagonistic properties (pEC 50 = 9.13 and 5.78, respectively). www. cns-platform.eu Scheme 1. Synthesis of target compounds 612. (a): 1,4-dibromo- butane, K 2 CO 3 , 18-crown-6, 95% ethanol, 24h; (b): phthalimide, K 2 CO 3 , 18-crown-6, xylene, 22h; (c): 1). N 2 H 4 · H 2 O, ethanol, 1h; 2). HCl, 4h; (d): PhSO 2 Cl, Et 3 N, CHCl 3 , 20°C, 4h; (e): PhSO 2 Cl, DIPEA, CHCl 3 , reflux, 6h; (f): amine, NaI, K 2 CO 3 , CH 3 CN, reflux, 2h. Figure 1. Structures of model 5-HT 7 R ligands S O O N S O N N C H 3 O N N S OH O O C H 3 N N N O C H 3 O N F N N O OH O N 1, risperidone K i (5-HT 1A ) = 250 nM K i (5-HT 7 ) = 1.6 nM 4 K i (5-HT 1A ) = 210 nM K i (5-HT 7 ) = 6 nM 5 K i (5-HT 1A ) = 189 nM K i (5-HT 7 ) = 2.9 nM 3 K i (5-HT 1A ) = 1585 nM K i (5-HT 7 ) = 15.8 nM 2, SB-269970 K i (5-HT 1A ) > 10 000 nM K i (5-HT 7 ) = 1.2 nM O S O N O H Cl N S O O O N N NH N N O N N O O S O O N N N O N H R N S O O R: 3-(piperazin-1-yl)-1,2-benzoxazole (8), 2-(morpholin-4-yl)ethan-1-amine (9), R: 2-(pyrrolidin-1-yl)ethan-1-amine (10), trans-decahydroisoquinoline (11), R: R: R: cis/trans-decahydroquinoline (12) 6 14 15 a, b c, d e 7 13 f 8-12 Figure 3. Top-scored ligand-5-HT 7 R complexes for: (A) 6, (B) 7, (C) 8, (D) 9, (E) 10, (F) 11, (G) 12. Residues entering into specific interac- tions with ligands are presented as thick sticks. Green lines represent H- bonds and salt bridges, red lines – aromatic interactions CH–p and p–p. Design and synthesis New compounds have been designed based on structural fea- tures, present in model ligands 15, which might be important for both high affinity for 5-HT 7 R and selectivity. As a starting point, the dual antagonist of 5-HT 1A and 5-HT 7 R – NAN-190, was used (Table 1). Firstly, 1,2-benzoxazole fragment was introduced into arylpiperazine part of compound according to Perrone at al. 2 who reported it as improving 5-HT 7 R vs 5-HT 1A R selectivity (e.g. 5). This fragment is also present in the structure of multireceptor antipsy- chotic drug risperidone (1), which has a particularly high affinity for 5-HT 7 R. Next, in derivatives 712, phthalimide portion of 6 was replaced by arylsulfonyl group, (a common motif of many selective 5-HT 7 R antagonists (e.g. 2, 4), and subsequently, in a place of flexible alkyl chain, 2-ethyl-1-piperidine fragment, was introduced. In the structures of compounds 912 the amine pharmacophore was also modified, and among others, the perhydroisoquinoline moiety (4) was used, following the results of Raubo et al. 3 , who found this fragment important for selectivity. Table 1. The receptor binding affinity of NAN-190 and test set of compo- unds 612. In silico results Compounds 6 and 7 with flexible n-butyl alkyl chain were anchored in analogous mode to that found in our earlier studies for non-selective derivatives, and accepted slightly bent conformation (fig. 3 A, B). 1 The amine part, i.e. the 3-(piperazin-1-yl)-1,2- benzoxazole fragment, occupied the pocket I, interacting with the amino acids of helices 3 and 6. An opposite terminals, the phthalimide or the phenylsulfonamide moieties penetrated the pocket II, and the oxygen atom of carbonyl group in 5 was able to form a strong hydrogen bond with Tyr7.43. Partial rigidification of 8 by 2-piperidine ring, forced more bent conformation, causing phenyl substituent of sulfonamide group, docked nearby 3-(piperazin-1-yl)- 1,2-benzoxazole fragment, to interact with Phe6.51 (fig. 3 C). The docking results of compound 9 showed, that the molecule was considerably shifted toward pocket II and there were all main ineractions. The sulfonamide oxygen was in vicinity to Tyr7.43, and phenyl substituent could form the interactions of type p-p with Phe3.28, whereas perhydroisoquinoline moiety was in vicinity of Trp6.48 and Phe6.52 (fig. 3 D). The mode of binding identified for compound 9 was analogous to that, described earlier for highly-active arylsulfonamidalkylamine ligands (fig. 2) 1 and reflected real high affinity and the selectivity of 9 to 5-HT 7 R (fig. 3 D). The perhydroquinoline derivative 10, was anchored nearby the central part of receptor binding site with the oxygen atom from sulfonamide moiety turned in side of Tyr7.43 (fig. 3 E). The geometry of perhydroquinoline moiety caused its different arrangement in binding pocket, making possible only few, unspecific interactions of hydrophobic nature. This results may explain lower 5-HT 7 R affinity of 10 than that found for 9, however prediction of activity/selectivity of 10 based on docking solutions was not so obvious as in the case of derivatives 69. Although the docking results of compounds 11 and 12 indi- cated the possibilities of forming complexes with 5-HT 7 R model mainly in pocket I, their binding modes were quite opposite (fig. 3 F, G) in relation to solutions found for SB 269970 as well as for others compounds investigated in the present study. In both cases the sulfonamide part was directed in right, hydrogen bond with Ser5.42 was formed by sulfonamide oxygen, and phenyl sub- stituent interacted with Phe6.52. These differences caused that the ex ante prognosis of activity/selectivity for 11 and 12 was doubtful, nevertheless both derivatives were found inactive in our binding experiments.

Searching of novel leads for 5-HT receptor antagonists ...medchem-ippas.eu/.../uploads/2014/01/p-247-RBBD11-JMMC-Catania.pdf · Conclusions On the basis of obtained results perhydroisoquinoline

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Conclusions

On the basis of obtained results perhydroisoquinoline 9 was

chosen as a lead compound for further development and optimiza-

tion of 5-HT7R selective ligands.

Moreover, since the recent data have already provided interesting

insights regarding 5-HT77R antagonism as beneficial component of

therapeutic action of numerous antipsychotic drugs (amisulpride

and lurasidone) we also selected benzisoxazole piperazine derivative

8 to develop the second series of potential multireceptoral agents

with high 5-HT7R affinity.

The present investigation has also confirmed the usefulness of

our 5-HT7R model in designing active 5-HT7R ligands with purpose-

ful selectivity showing supporting role of docking results during lead

identification.

Figure 2. Surface of the 5-HT7R binding site with docked selective an-

tagonist SB 269970 (2). Two binding pockets: I – between TMHs 3–6

(red) and II – between TMHs 7–3 (blue) are, indicated. Common anchor-

ing point (Asp3.32) in magenta.

Ki [nM] Structure

5-HT7 5-HT1A 5-HT2A 5-HT6 D2

N

N

ON

O

O

NAN-190a

128 0.6 182 NT 47

N

N

O N

N

O

O

6

128 24 NT 874 195

NN

N

NO

S

O O

H

7

13 299 44 341 691

SN

N

N

O N

O

O

8

11 104 19 393 12

SN

N

O

O

9

44 2966 6000 >10 000 6970

SN

N

O

O

10

407 10 050 9000 >10 000 >10 000

SN

N

N

O

O

O

H

11

>5000 >10 000 NT >10 000 NT

SO

ON

N

NH

12

>5000 >10 000 NT >10 000 NT

Searching of novel leads for 5-HT7 receptor antagonists - selectivity

hints from molecular modeling studies

Ryszard Bugnoa, Beata Duszyńskaa, Grzegorz Satałaa, Stefan Mordalskia, Piotr Chmielarzb, Irena Nalepab, and Andrzej J. Bojarskia

aDepartment of Medicinal Chemistry, Institute of Pharmacology, Polish Academy of Sciences, 12 Smetna Street, 31-343 Kraków, Poland bDepartment of Brain Biochemistry, Institute of Pharmacology, Polish Academy of Sciences, 12 Smętna Street, 31-343 Kraków, Poland

Objective

To identify new 5-HT7R antagonists as potential antidepressant

agents, a pilot set of structurally diversified compounds was

designed, synthesized, and binding affinities for 5-HT7R and other

therapeutically important: 5-HT1AR, 5-HT2AR, 5-HT6R as well as

opamine D2 receptors, were assessed. In addition, docking studies

using the previously developed 5-HT7R homology models,1 were

used to interpret affinity and selectivity data.

References: [1] Kołaczkowski M. et al. J. Med. Chem. 2006, 49(23),

6732-41. [2] Perrone R. et al. J. Med. Chem. 2003, 46(4), 646-9.

[3] Raubo P. et al. Bioorg. Med. Chem. Lett. 2006, 16(5), 1255-8.

Acknowledgments

This study was partly supported by a grant PNRF-103-Al-1/07

from Norway through the Norwegian Financial Mechanism.

In vitro results

The affinities of compounds 6–12 for 5-HT7, 5-HT1A 5-HT2A,

5-HT6, and dopamine D2 receptors were determined using competi-

tive radioligand binding assays according to previously published

procedures (table 1).

Based on presented affinity and selectivity, compounds 8 and 9

were selected for testing their functional behaviour using a LANCE

cAMP assay, where both displayed antagonistic properties

(pEC50 = 9.13 and 5.78, respectively).

www. cns-platform.eu

Scheme 1. Synthesis of target compounds 6–12. (a): 1,4-dibromo-

butane, K2CO3, 18-crown-6, 95% ethanol, 24h; (b): phthalimide, K2CO3,

18-crown-6, xylene, 22h; (c): 1). N2H4 · H2O, ethanol, 1h; 2). HCl, 4h;

(d): PhSO2Cl, Et3N, CHCl3, 20°C, 4h; (e): PhSO2Cl, DIPEA, CHCl3, reflux,

6h; (f): amine, NaI, K2CO3, CH3CN, reflux, 2h.

Figure 1. Structures of model 5-HT7R ligands

S

OO

N

SO

NN

CH3 O

N N

S

OH

O

OCH3N

N

N

O

CH3

O N

F

N

N

O OH

O N

1, risperidone

Ki (5-HT1A) = 250 nM

Ki (5-HT7) = 1.6 nM

4

Ki (5-HT1A) = 210 nM

Ki (5-HT7) = 6 nM

5

Ki (5-HT1A) = 189 nM

Ki (5-HT7) = 2.9 nM

3

Ki (5-HT1A) = 1585 nM

Ki (5-HT7) = 15.8 nM

2, SB-269970

Ki (5-HT1A) > 10 000 nM

Ki (5-HT7) = 1.2 nM

O

S

O

N

OH Cl

NS

OO

O N

N

NH N

N

O N

N

O

O

S

O O

NN

N

O N

H

R

NS

OO

R: 3-(piperazin-1-yl)-1,2-benzoxazole (8), 2-(morpholin-4-yl)ethan-1-amine (9),

R: 2-(pyrrolidin-1-yl)ethan-1-amine (10), trans-decahydroisoquinoline (11), R: R:

R: cis/trans-decahydroquinoline (12)

6

14 15

a, b c, d

e

7

13

f

8-12

Figure 3. Top-scored ligand-5-HT7R complexes for: (A) 6, (B) 7, (C) 8,

(D) 9, (E) 10, (F) 11, (G) 12. Residues entering into specific interac-

tions with ligands are presented as thick sticks. Green lines represent H-

bonds and salt bridges, red lines – aromatic interactions CH–p and p–p.

Design and synthesis

New compounds have been designed based on structural fea-

tures, present in model ligands 1–5, which might be important for

both high affinity for 5-HT7R and selectivity. As a starting point, the

dual antagonist of 5-HT1A and 5-HT7R – NAN-190, was used

(Table 1). Firstly, 1,2-benzoxazole fragment was introduced into

arylpiperazine part of compound according to Perrone at al.2 who

reported it as improving 5-HT7R vs 5-HT1AR selectivity (e.g. 5). This

fragment is also present in the structure of multireceptor antipsy-

chotic drug risperidone (1), which has a particularly high affinity for

5-HT7R. Next, in derivatives 7–12, phthalimide portion of 6 was

replaced by arylsulfonyl group, (a common motif of many selective

5-HT7R antagonists (e.g. 2, 4), and subsequently, in a place of

flexible alkyl chain, 2-ethyl-1-piperidine fragment, was introduced.

In the structures of compounds 9–12 the amine pharmacophore

was also modified, and among others, the perhydroisoquinoline

moiety (4) was used, following the results of Raubo et al.3, who

found this fragment important for selectivity.

Table 1. The receptor binding affinity of NAN-190 and test set of compo-

unds 6–12.

In silico results

Compounds 6 and 7 with flexible n-butyl alkyl chain were

anchored in analogous mode to that found in our earlier studies for

non-selective derivatives, and accepted slightly bent conformation

(fig. 3 A, B).1 The amine part, i.e. the 3-(piperazin-1-yl)-1,2-

benzoxazole fragment, occupied the pocket I, interacting with the

amino acids of helices 3 and 6. An opposite terminals, the

phthalimide or the phenylsulfonamide moieties penetrated the

pocket II, and the oxygen atom of carbonyl group in 5 was able to

form a strong hydrogen bond with Tyr7.43. Partial rigidification of 8

by 2-piperidine ring, forced more bent conformation, causing phenyl

substituent of sulfonamide group, docked nearby 3-(piperazin-1-yl)-

1,2-benzoxazole fragment, to interact with Phe6.51 (fig. 3 C).

The docking results of compound 9 showed, that the molecule was

considerably shifted toward pocket II and there were all main

ineractions. The sulfonamide oxygen was in vicinity to Tyr7.43,

and phenyl substituent could form the interactions of type p-p

with Phe3.28, whereas perhydroisoquinoline moiety was in vicinity

of Trp6.48 and Phe6.52 (fig. 3 D). The mode of binding identified

for compound 9 was analogous to that, described earlier for

highly-active arylsulfonamidalkylamine ligands (fig. 2)1 and

reflected real high affinity and the selectivity of 9 to 5-HT7R (fig.

3 D).

The perhydroquinoline derivative 10, was anchored nearby

the central part of receptor binding site with the oxygen atom

from sulfonamide moiety turned in side of Tyr7.43 (fig. 3 E).

The geometry of perhydroquinoline moiety caused its different

arrangement in binding pocket, making possible only few,

unspecific interactions of hydrophobic nature. This results may

explain lower 5-HT7R affinity of 10 than that found for 9, however

prediction of activity/selectivity of 10 based on docking solutions

was not so obvious as in the case of derivatives 6–9.

Although the docking results of compounds 11 and 12 indi-

cated the possibilities of forming complexes with 5-HT7R model

mainly in pocket I, their binding modes were quite opposite

(fig. 3 F, G) in relation to solutions found for SB 269970 as well as

for others compounds investigated in the present study. In both

cases the sulfonamide part was directed in right, hydrogen bond

with Ser5.42 was formed by sulfonamide oxygen, and phenyl sub-

stituent interacted with Phe6.52. These differences caused that

the ex ante prognosis of activity/selectivity for 11 and 12 was

doubtful, nevertheless both derivatives were found inactive in our

binding experiments.