Release Notes - Agilent · VnmrJ 2.1 B Release Notes 4 VnmrJ 2.1B Release Notes 01-999321-00 A0106 • ct3d • Fastmap • isis • semsdw has been replaced by sems with diffusion

01-999321-00 A0106 VnmrJ 2.1B Release Notes 1

Release Notes VnmrJ 2.1B

VnmrJ version 2.1 revision B is the first VnmrJ release to support imaging on the VNMRS system. With the addition of imaging, VnmrJ 2.1B supports all applications on VNMRS. ProTune and LC/NMR/MS on VNMRS and UNITYINOVA are integrated with this release. The Mercury spectrometers are not supported by VnmrJ 2.1B. This release supports both Sun/Solaris and PC/Linux host computers. Details on the new features of VnmrJ 2.1B and bug fixes are listed below.

• System Requirements, this page

• VnmrJ 2.1B Compatibility Matrix, page 2

• New Menu system, page 2

• Analyze Menus, page 2

• Imaging, page 2

• Imaging Shaped Gradient Library, page 3

• New Imaging Pulse Sequences, page 3

• Missing Imaging Pulse Sequences, page 3

• New Imaging Top Menu/Browser, page 4

• ProTune, page 4

• LC-NMR/MS, page 4

• Hadamard Spectroscopy, page 5

• Pbox Interface, page 5

• New Liquids Pulse Sequences, page 6,

• New Solids Pulse Sequences, page 6

• New Commands, Macros, and Parameters, page 7

• Bugs fixed since VnmrJ 1.1D and 2.1A, page 8

System RequirementsVnmrJ 2.1B requires the following:

• UNITYINOVA or VNMRS spectrometer systems.

• Blade series Sun or Dell PC

• Solaris 8 or Solaris 9 on the Sun or RedHat ES4 or ES3 on the Dell.

ds

Temporary Errata

VnmrJ 2.1 B Release Notes

2 VnmrJ 2.1B Release Notes 01-999321-00 A0106

VnmrJ 2.1B Compatibility Matrix

New Menu system The menu system in VnmrJ 2.1B has been redone. It now has File, Edit, and Tools menus, typical of many software products. This includes new methods for interactive access to a file browser. The details of the menu system are described in VnmrJ Liquids NMR User Guide, VnmrJ Walkup, and VnmrJ Imaging User Guide manuals.

The Walkup operator interface can be configured by the administrator to either have limited privileges or full privileges, or someplace in between, depending on the parameter panellevel. The walkup user can then either use the Study Q for queued acquisitions or can use the Direct Acquire mode where the Study Q is disabled. Thus a walkup operator with a panel level of 100 and working in the direct acquire mode should have all of the capabilities of the older experimental user, but in a way that is much more consistent in the use of tools with the Walkup interface, i.e. the experiment selector and protocols can be used.

The experimental interface was also rearranged to include the new File, Edit, and Tools menus.

Analyze MenusAnalyze functions have been added to the Process menu in the Experimental and Walkup liquids interfaces. The menu selections open new dialogs for: Cosy Correlations, Spin Simulation, Deconvolution, Regression, and Stars (if present). See VnmrJ Liquids NMR User Guide manual for details.

ImagingVnmrJ 2.1B for imaging is primarily targeting applications on the new Varian NMR spectrometer.

In order to take advantage of many of the new features on the VNMRS system as well as the shaped gradient library, we have reprogrammed existing sequences.

There have been very few changes to the interface and no changes to the use of the Study Queue, protocols, and viewports.

Inova/Sun Inova/PC VNMRS/Sun VNMRS/PC

Liquids yes yes yes yes

Solids yes yes (no ACC) yes yes

Imaging no no yes no

ProTune yes yes yes yes

LC/NMR/MS yes no no yes

Hermes yes yes yes yes

SMS/Carousel yes yes yes yes

VAST/NMS yes yes yes yes



Imaging Shaped Gradient LibraryThe Shaped Gradient Library (SGL) is a collection of functions to generate gradient shapes based on acquisition parameters, such as Field-of-View and slice thickness parameters. The shapes are generated when the experiment is started and written to the user's local shape directory, ~/vnmrsys/shapelib.

In addition, calculation of rf power (coarse and fine) is included, as well as a number of standard magnetization preparation modules, fat saturation, spatial saturation, and magnetization transfer.

The use of SGL greatly simplifies the sequences and allows easy addition of preparation modules.

A description of all functions in SGL can be found in the stand-alone SGL manual.

New Imaging Pulse SequencesThe list is in order of sequence complexity, with the prescan-type sequences last.

At the time of 2.1B release, the following sequences are implemented

These sequences and available options are described in the VnmrJ Imaging Users Guide manual.

Missing Imaging Pulse SequencesThe following sequences that existed in VnmrJ 1.1D are not implemented 2.1B:

• mems

• presscsi

• angio

• 3D angio

• csi

spuls Simple pulse-and-acquire sequence

gems 2D gradient echo sequence with mag-prep options

sems 2D spin echo sequence with mag-prep and diffusion options

stems 2D stimulated echo sequence with mag-prep and diffusion options

fsems 2D fast spin echo sequence with mag-prep options

epi 2D echo-planar sequence with mag-prep and diffusion options

ge3d 3D slab-selective gradient echo sequence with mag-prep options

se3d 3D slab-selective spin echo sequence with mag-prep options

fse3d 3D slab-selective fast spin echo sequence

press Single-voxel spectroscopy using stimulated echo press localization

steam Single-voxel spectroscopy using stimulated echo localization

prescanpower Spin echo profile for power calibration during prescan

prescanfreq Pulse-and-acquire sequence for frequency calibration

ge3dshim 3D gradient echo sequence for field map shimming

gemsshim 2D gradient echo sequence for field map shimming



• ct3d

• Fastmap

• isis

• semsdw has been replaced by sems with diffusion option

New Imaging Top Menu/BrowserThe top menu has been modified to conform with both the high-resolution NMR interface and a more typical industry standard top menu.

The most important new features are the Open and Save as options under the File menu. These menu items open a browser window that allows browsing through directories to locate a particular file or save a data set in a particular place, respectively. Consequently, the browser that was found above the Locator in VnmrJ 1.1D was removed.

The Process and Display menus have been removed, because all of their functionality can now be found in the Image Control panels in the vertical panels to the left of the graphics area.

The creation of protocols has moved to the Edit menu, and Save Data Setup has moved to the File menu.

The option Testacquire found in VnmrJ 1.1D was replaced by Use Study Queue, which has the opposite logic of Testacquire. When checked, Use Study Queue forces updates of the study queue and automatic saving of data, when unchecked it behaves as Testacquire.

ProTuneAutomatic probe tuning software is available, for both automation and manual usage. The ProTune Probe Tuning Accessory hardware, and a ProTune compatible probe (e.g. AutoX), must be installed.

For more information, see the appropriate sections in VnmrJ 2.1 B Installation and Administration, VnmrJ Liquids NMR User Guide, and VnmrJ Walkup manuals.

LC-NMR/MSThe new LC-NMR/MS software incorporated into VnmrJ 2.1B provides a complete set of tools for LC-NMR and LC-NMR/MS experiments, including on-flow (gradient and isocratic), stop-flow (manual/automatic peak picking, automatic with multiple experiments per peak, manual stop), time slice, analyte collection and elution, and more. This software supports the new Varian 335 Photo Diode Array and 310 UV/Vis detectors, Prostar 230 LC pump, 430AS autosampler, 1200L mass spectrometer control, and data visualization. The LC-NMR/MS software in VnmrJ 2.1B integrates and combines the display of all LC, detector, and MS data in a single interface and takes full advantage of VnmrJ automation tools, including StudyQ and EnterQ.

Please note that VnmrJ 2.1B software provides control of the 9000 series of pumps and detectors. The 9000 series of pumps and detectors have been officially discontinued and technical support is unavailable. Users installing this software on a system containing these hardware items do so at their own risk. VnmrJ 2.1B supports only the 230 pump and the



430 AS Autosampler (330 PDA’s and other pumps and Autosamplers are not supported). Inova/Solaris and Varian NMR System/Linux combinations are supported.

Hadamard SpectroscopyHadamard spectroscopy, a new technique for rapidly acquiring and processing multidimensional liquids experiments, is included in VnmrJ 2.1B. A new panel for viewing and editing Hadamard frequency lists was added in 2.1B and several bugs were fixed. A description of how to set up and use 2D Hadamard spectroscopy is given in VnmrJ Liquids User Guide, section 11.7.

Pbox InterfacePbox functionality for generating shaped pulses is the same as in previous software versions. However, the following implementation details have changed:

• Pulse sequence statements that use a shape variable as an argument must use an address to the shape, rather than the shape variable itself. The following pulse sequence statements are affected:

pbox_pulse

pbox_decpulse

pbox_dec2pulse

pbox_dec3pulse

pbox_spinlock

pbox_decspinlock

pbox_dec2spinlock

pbox_dec3spinlock

pbox_simpulse

pbox_sim3pulse

pbox_xmtron

pbox_decon

pbox_dec2on

pbox_dec3on

homodec

pbox_mix

pbox_ad180

pbox_grad

pbox_xgrad

pbox_ygrad

pbox_zgrad

An example from the tocsyHT.c pulse sequence follows:

shape hdx; pbox_pulse(&hdx, oph, rg1, rg2);



• System shell calls to the Pbox program must use the -u userdir option. This option has been strongly recommended in the past, and is now a requirement, especially for automation users. For example see the ztocsy_zq.c pulse sequence.

New Liquids Pulse Sequences

A number of new pulse sequences were added for liquids NMR in release 2.1B. The first set of added pulse sequences consists of variants for NOESY, TOCSY, and COSY that have the option for Zero Quantum suppression with the swept-pulse/gradient combination technique outlined by Michael Thrippleton and James Keeler in Angew. Chemie Int. Ed. 2003, 42. P 3938‚3941. These experiments are accessed with the, Noesy_zq, Ztocsy_zq, and Zcosy_zq, protocols. All three experiments feature on-the-fly Zero-Quantum Suppression by incorporating a complex swept-pulse/gradient-pair calibration directly into the pulse sequence code. A valid value for the gcal (Hz/ DAC) for the PFG must be present in the probe file in order for the experiments to work properly.

The second set of liquids pulse sequences new to the 2.1B release of VnmrJ consists of a pair of adiabatic HSQC experiments, HSQCAD and gHSQCAD, accessed with the Hsqcad and Ghsqcad protocols. Sequences feature Compensation of Refocusing Inefficiency by Sychronization of Inversion Sweep [CRISIS] as well as wide 13C nucleus refocusing/inversion via adiabatic 13C pulses. Both sequences are intended solely for 1H/ 13C 2D chemical shift correlations. The sensitivity advantages afforded by these pulse sequences (introduced by Boyer, Johnson, & Krishnamurthy in J. Magn. Reson. 165, p 253-259 (2003)), are two-fold. First, perfect wide-band 13C 180ο pulses essentially free of calibration errors using tailored inversion via adiabatic 13C pulses increase sensitivity for 1H/13C pairs with 13C resonances far from the transmitter relative to using a simple square 13C 180o pulse. Adiabatic 180o inversion pulses are used in pairs to provide refocusing. Second, timing of the refocusing of 13C spins to closely match the trend for 1JCH to vary from ~120 Hz to ~200 Hz in a progressive fashion from high to low field using the CRISIS technique. The shaped pulses are automatically created at setup time by a macro whose name is contained in the wrtp parameter stored in the parameter sets. Not all features described by the authors in the original publication are implemented in the software at this time. At this time these experiments support basic 1H/13C chemical shift correlations with the advantages afforded by adiabatic 13C pulses and the CRISIS technique. Options, such as, Hadamard encoding the 13C dimension are not automatically supported at this time.

Finally, all pulse sequences that contain a spinlock such as TOCSY, HSQCTOXY, or gHSQCTOXY, HMQCTOXY, or gHMQCTOXY were updated in VnmrJ 2.1B. The default spinlock was changed from MLEV17C to Z-DIPSI. In addition, the dps display now shows a single pulse labeled with the type of spinlock being used at the appropriate power level instead of the spinlock period details.

The pwxcal pulse sequence was changed so that it uses pwxlvl1, pwxlvl2, and pwxlvl3 for power levels for pwx1, pwx2, and pwx3, respectively.

New Solids Pulse SequencesVnmrJ 2.1B contains three new solids pulse sequences for VNMRS along with their protocols. These sequences are used for probe calibration, basic CPMAS and MAS. All other solids sequences should be obtained from the SolidsLib for VNMRS, which is in the file solidslib.tar.Z on the Varian Web Site. Note that xpolar1.c has been replaced for VNMRS.



Onepulse provides a single pulse with fine power control, similar to xpolar1.c with xpol='n'.

Stdcp provides a constant-amplitude cross polarization similar to xpolar1.c with xpol='y'.

Tancp provides a constant-linear-tangent ramped CP.

VnmrJ 2.1B sequences for UNITYINOVA are unchanged. Do not use sequences written for

UNITYINOVA Systems with VNMRS Systems.

New Commands, Macros, and ParametersNew functionality was added to VnmrJ. A summary of new commands and parameters is shown below. Details can be found in the Command and Parameter Reference Manual or from VnmrJ, by entering man('commandname'). For automation users, the progress of the automation run can be monitored from a UNIX console window. In the latest Linux version, the console window is broken. We have added a VnmrJ feature to bypass this console mechanism. If a file named /vnmr/tmp/acqlog is created, then the logs of all automation runs are stored in that file. If that file is removed, logging is turned off. To activate this feature, as the VnmrJ administrator account (e.g., vnmr1), enter the following UNIX commands:

touch /vnmr/tmp/acqlog

chmod 666 /vnmr/tmp/acqlog

coldprobe (M) Enables coldprobe protection for 13C observe

diffparams (U) Added a -active option

ft, wft (C) Added a dodc option. By default, on VNMRS systems, dc correction is turned off. By default, an all other systems, dc correction is turned on.

jpublish (M) Archive and/or copy to system a local protocol

mz (M) Move integral rest points between experiments (from userlib)

peakmin (C) Analogous to the peak command, except it returns information about the smallest or most negative point.

pwxcal (M) Uses standard parameters for power levels and pulse widths.

random (C) Calculates a random number

readhw (C) Added the 'temp' option to read the probe temperature.

setlp0 (M) Calculates delays for the VNMRS system that result in a zero first order phase correction (lp)

warmprobe (M) Disables coldprobe protection for 13C observe

write (C) The %c format option will write any ascii character.

editht (M) Added an option to read in and display a user-generated Hadamard frequency list.



Bugs fixed since VnmrJ 1.1D and 2.1A(Bug Fixes- included here as reference only)

2d_setup.j1101 ni customization not accounted for in F1 LP

analyze.j1101 Spin Simulation, Deconvolution, etc. missing?

apptype.j1102 Parameter may not exist

aucgrad.j1101 May not set dof

autolock.j2101 alock='y' autolocks twice for each sample

automation.j1114 Sample status update on tray fails unexpectedly

automation.j1119 May send e-mail to wrong address

automation.j2101 Tray color switches to old value if sample is re-run

autoscale.j1101 Fails if expl.out does not exist

autotest.6108 Pulse sequences for UNITYplus are missing

autotest.6110 Reports huge errors while spectra look OK

autotest.6111 Fails due to variable format / definition error

autotest.6112 Fails with format error

autotest.j1102 Console S/N does not allow entry of standard format

autotest.j1103 Does not read probe file for pw90's and power

autotest.j1108 Syntax error causes failures

autotest.j1109 Stops during lock test if lock gain/power too low

box.j2101 May crash VnmrJ

browser.j1102 Need an all images binding option

browser.j1110 Doesn't load 3D images in some situations

browser.j1111 Frames disappearing

browser.j1112 May crash with large number of images

bs.j2101 Using small bs results in corrupt datasets

club180.j1101 Shape definition has bad text file

color.j2101 Missing from menus

cqfindz0.j1101 Unnecessary error message in automation

cqplot2d.j2101 Plot top/side spectrum on 2D Plot panel fails

csi2d.j1102 Error messages do not show up on line3

csi2d.j1104 Asymmetric spatial dimensions not allowed

dept.j1106 Erroneous legacy code

df2d.6102 May cause VNMR to crash

dm.6101 Setting dm='y' su does not turn decoupler on.

dosy.0015 Setup macros do not set spin or pw

dosy.0016 VnmrJ templates are missing for DOSY

dosy.0018 Experiment setup stops with error

dotlogin.6104 Defines the wrong mail path for Solaris

editht.j2101 Does not work with only one line

exit.j1101 Exiting the program is not a Utility

expproc.6101 May lose communication with automation card



fastmap.j1102 Error messages not printed on line3

fdf.j1103 FDFs saved from Image panel incorrect size?

file_browser.j1102 Tool panel getting crowded now

findpw.6101 Inappropriate limits & error behavior with imaging

fixpsg.j1101 Fatal in 64-bit Linux OS

foldt.j1101 Not available

frames.j1101 Changing layout clears frames in Plan

frames.j1102 Retrieving saved frame layout displays aipMode

ft3d.6104 Fails after installing patch 6.1CpsgSOLino204

ft3d.j1103 Binary executable missing from Linux version

gcosy.j1103 Still cannot symmetrize

ghmqctoxy.j1101 Macro aborts because it cannot retrieve twpr_cf

ghmqctoxy.j2101 Lacks parlib and menu entries

ghsqctoxy.j1101 Only seems to work

gilson.j1103 Does not work on a Linux PC system

go.j2101 Inappropriate paros call

gplan.j1103 gplan('setValue',...) doesn't update pss

gradients.j1101 Limits too low for MERCURYplus with Performa II

hregions.j1101 Does an aph

hsqctoxy.j1101 Does not work

image.j1101 Default origin should be at isocenter

image.j1102 Position labels missing

image.j1104 Save Data - FDF header is incorrect

image.j1105 First image not scaled right

image.j1106 Scale binding not working

image.j1107 FDF files saved from image panel cannot be displayed

image.j1108 Can't change brightness/contrast in Vscale window

imaging.j1102 Image reprocessing resets display

imaging.j1105 Image display settings are lost when VnmrJ is exited

imaging.j1107 ge3d may claim FID exceeds 4 GBytes maximum size

imaging.j1108 ge3d may crash VnmrJ

imaging.j1113 Missing a button to read image scaling from header

imaging.j1116 Batches don't work in Current viewport

imaging.j1118 Images may be lost when changing frame layout

imaging.j1119 Save Scaling doesn't work on the correct images

installation.6102 Auto backup of important files is not obvious

installation.j1101 Shows Vacuuming template1

installation.j1105 Process does not exit smoothly

installation.j1106 On virgin system /var/adm/profiles does not exist

installation.j1119 Probe directories not copied

installation.j1122 Error messages

installation.j2101 May fail under RHEL



integration.j1101 Almost inoperative

invsetsw.j1101 Division by zero error when tn='none'

iplan.6106 Does not cope gracefully with zoomed image

iplan.6111 Erroneous results with non-square scout images

layout.j1112 Retrieving saved layout gives strange layout name

lc-nmr.j1102 lccmd('stopRun') or lccmd('StopRun') don't stop LC

lc-nmr.j1103 Retrieving chromatogram does not scale signal

load_nmr.j1101 Loading VnmrJ without linking gives problems

locator.j1102 Need size of workspace/data

locator.j1104 Date selection should show time as well as date

locator.j1108 Autotest data attributes not updated

locator.j1120 Need relative date selection

locator.j1137 Does not show or generate FDF files for imaging data

locator.j1138 Problem with pop-up delete custom locator statement

locator.j1139 Dates cut off with between selection

locator.j1141 Incorrect listing

locator.j1146 Lacks relevant search options

locator.j1148 Error importing legacy data

locator.j1149 Needs sideways scrolling

locator.j1150 Global variables not sorted in Locator

locator.j1151 Pre-VnmrJ 1.1D data deleted upon installation

locator.j1153 Strange error message

locator.j1154 Replicated entries

locator.j1155 Silent errors with reference to BioPack

locator.j1156 Database does not automatically start after bootup

locator.j1157 Cannot move/delete multiple entries

locator.j1159 No VNMR data files were found in the database

locator.j2104 Errors with some mounted directories

makeuser.j1107 Should allocate UIDs above 1000 only

manuals.6107 ifzero description error

mark.j2101 Any command after a mark on 2D crashes VnmrJ

menus.j1105 printer & plotter selection menu is blank

menus.j2101 Not switching properly between dssh and dfsh

mf.j1101 Need move commands in utilities menu

mopen.j1101 Maximum OS file size exceeded

movie.j1101 Images appear to be jumping around

movie.j1102 Clears graphics

mtune.j1102 Requires rfchannel setting on single full band system

mtune.j2101 Moves synthesizer frequency but does not return it

noesy.j1101 Has unconditional decpower(pwxlvl) statement

panel.j1104 Editor saves group in acq.xml, not in desired page

panels.j1123 Process/Display1D/Axis has unintended result



panels.j1124 Ambiguous wording in Diasplay1D template

panels.j1169 Groups with show condition may not show up in editor

panels.j1175 wysiwyg cannot be set from panel

panels.j1176 Standard panels give variable type errors

panels.j1178 2D Process mis-sets axis in heteronuclear 2D (HSQC)

panels.j1179 HSQC steady state selection doesn't work properly

panels.j1181 Line lists processing panel text cut off

panels.j1182 Setting individual integrals to a value too complex

panels.j1190 Layout priorities need adjusting

panels.j1193 Temperature slider increment too large

panels.j1195 2D data processing is clumsy

panels.j1196 Coarse/fine adjust reversed between temp & spin

panels.j1198 Error upon setting dm2/dm3 on Channels panel

panels.j2102 Mismatch between Spin/Temp and Flags panels

paros.j2101 May lead to abort error upon go

phasing.j2101 Cannot phase 1D trace in mixed mode 2D

plan.j1102 Needs improvement

plan.j1108 Numerous features need redefinition

plan.j1111 Milestone save/retrieve is picky

plan.j1113 Keeps setting iplanType to slices for csi2d

plan.j1116 Error about setgss

plan.j1117 pss gets reset with seqcon='nscnn

plan.j1118 Retrieving previously scanned plans no longer works

plan.j1120 Changing thickness does not update gap

plan.j1121 Interleaving slices is not remembered

plan.j1122 Retrieving a previous plan with 3orthogonal fails

planning.j1102 Dragging right mouse-button brings up parameter list

pltext.j1102 Prints meaningless information

printing.j1101 JPEG output slightly mangled

printing.j1102 Printing to file seems to be broken

probe_edit.j1103 Copy to system works only first time (no updates)

probe_edit.j1104 Doesn't support solvent factors

psg.j1109 Outdated abort calls causing fixpsg errors

psg.j2101 id2 does not work properly

pulsetool.j1101 Missing from /vnmr/bin

recon.j1101 Stores/displays in acquisition order when interleaved

recon.j1102 Browser doesn't load or display correct images

recon_all.j1101 Crashes VnmrJ if real time reconstruction falls behind

recon_all.j1102 Potential memory leak?

recon_all.j1103 Doesn't apply petable for gems data

recon_all.j1104 Does not apply phase correction to EPI

recon_all.j1105 Crashes VnmrJ if parameter doesn't exist



recon_all.j1107 Does not sort on slice position

recon_all.j1109 Problems with sviblist

recon_all.j1113 Crashes viewport with seqcon='nscnn'

recon_all.j1115 Can not display over 1000 images

recon_all.j1116 Header doesn't reflect lsfrq1

recon_all.j1117 Does not allow spaces in sviblist

reviewq.j1101 Reloading images crashes the viewport

reviewq.j1102 Can't get it to show all images from scan

reviewq.j1103 sort by slices doesn't work for single scan

reviewq.j1104 Doesn't load FID's from Locator

reviewq.j1105 The Review viewport may crash

roesy1d.j1101 Syntax error / typo in the ROESY1D macro

roesy1d.j1102 Not compiled on installation of VnmrJ 1.1D

roesy1d.j1103 aig set to 'nm'

roesy1d.j1104 Missing from Linux version for UNITYINOVA

roi.j1101 Load and save ROIs should be defined in image browser

roi.j1104 If no frames selected new ROI always show up in frame 1

rtv.j1101 Does not execute fixpar

save.j1101 Acquire -> Future Actions -> Save FID Now fails

sel1d.j1101 2D params may be present in selective 1D experiment

sel1d.j1102 Pulse width pw not set from probe file value pw90

seqgen.j1101 May fail if sequence name is given without extension

seqgen.j1102 With 64 bit Linux OS, seqgen gave ld error

setacq.6108 May create the wrong Ethernet devices

setacq.j1103 Does not handle Ultra with ce 2nd Ethernet card

shim18.j1101 Macro has an extraneous endif

shimming.j1102 There appears to be no widget for saving shims

showstat.j1101 Program is missing.

sigfigs.j1101 Fails for negative & large numbers

spin.j1103 Command doesn't work on Linux

spin.j1104 Spinning does not start

studyq.j1114 Block size access not handled as expected

studyq.j1116 Cannot retrieve data from Scout Scan in StudyQ

svib.6102 Image output order not same as dmi

toolbar.j1103 Buttons appear to be clicked only once

utilities.j1103 Need copy submenu in utilities

vast.j1104 String plate location names not supported

viewports.j1102 Unable to drag old data to Review viewport

vnmrj.j1159 Start Scan conflicts with switching to Review

vnmrj.j1148 Slowdown with slice planning

vnmrj.j1158 Doesn't start if ReviewQueue_imgstudy.xml is bad

vnmrj_adm.j1106 Reports errors and interface doesn't config



vnmrj_adm.j1107 May get wrong admin user name

vnmrj_adm.j1111 Operator passwords not saved

vnmr_accounting.j1101

Cost/Time Accounting tool fails to start in Linux

walkup.j1105 No automatic plotting

wet1d.j1106 Fine power calculation is wrong

wetit.j1101 Not well written

wtfile.j1101 User weighting functions crash VnmrJ under Linux

xmsubmit.j1101 Fails if study name begins with numeric character

_vloc.j1101 Specific for 8x12 format

z0.j2101 Increments by itself if negative after su

Documents

Release Notes - Agilent · VnmrJ 2.1 B Release Notes 4 VnmrJ 2.1B Release Notes 01-999321-00 A0106 • ct3d • Fastmap • isis • semsdw has been replaced by sems with diffusion