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Page 1 of 8 Project title / Job position title: Ph.D. Fellow in Statistical modelling of high-throughput phenotypic data in plant breeding Research Project / Research Group Description. Recent developments in phenotyping techniques have created renewed interest in statistical methods for supporting and improving phenotyping strategies. New phenotyping techniques, often high-throughput, use a wide array of equipment to continuously monitor growth and development for large populations of plants in the greenhouse and in the open field. As a consequence, for many plant phenotypes, long series of repeated measures come available between seed emergence and final yield. New statistical methods are thus required that are able to extract the most relevant information from multiple time series data on all aspects of plant growth and development. At this moment there is no standard way of analysing this kind of data. Very recently, we have proposed a new modeling strategy to the analysis single-trial experiments (Rodríguez-Álvarez et al. Spat Stat-Neth, 2017). We called the approach SpATS (Spatial Analysis of field Trials with Splines). The present project is intended to extend SpATS to more general situations. We aim to develop new spatio-temporal statistical methods for the analysis of time-series of phenotypic data. In the process, semiparametric smoothing methods jointly with mixed model techniques, are to be explored. It is also expected the development of computationally-efficient estimation procedures, as well as the implementation of user-friendly software. The project has a strong interdisciplinary nature. It involves (a) research in statistical methodology and computation; (2) knowledge on quantitative genetics; and (3) analysis of data from real agricultural field experiments. The thesis project will be developed in the Group of Applied Statistics (AS) of BCAM. Research stays at Biometris (www.biometris.nl) are expected to occur throughout the research period. PhD Advisor: María Xosé Rodríguez Álvarez (http://www.bcamath.org/en/people/mrodriguez) and Fred van Eeuwijk (https://www.wur.nl/es/Persons/Fred-van-van-Eeuwijk.htm)

Project title / Job position title: Ph.D. Fellow in ... · "la Caixa" Foundation will select international candidates. Subsequently, the selected candidates, will propose the Research

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Projecttitle/Jobpositiontitle:Ph.D.FellowinStatisticalmodellingofhigh-throughputphenotypicdatainplantbreeding ResearchProject/ResearchGroupDescription.Recentdevelopments inphenotypingtechniqueshavecreatedrenewedinterest instatistical methods for supporting and improving phenotyping strategies. Newphenotyping techniques,oftenhigh-throughput,useawidearrayof equipment tocontinuouslymonitor growth and development for large populations of plants inthegreenhouseandintheopenfield.Asaconsequence,formanyplantphenotypes,longseriesofrepeatedmeasurescomeavailablebetweenseedemergenceandfinalyield.New statisticalmethods are thus required that are able to extract themostrelevant informationfrommultipletimeseriesdataonallaspectsofplantgrowthanddevelopment.Atthismomentthereisnostandardwayofanalysingthiskindofdata.Veryrecently,wehaveproposedanewmodelingstrategytotheanalysissingle-trialexperiments (Rodríguez-Álvarez et al. Spat Stat-Neth, 2017). We called theapproachSpATS(SpatialAnalysisoffieldTrialswithSplines).Thepresentprojectisintended to extend SpATS to more general situations. We aim to develop newspatio-temporal statistical methods for the analysis of time-series of phenotypicdata.Intheprocess,semiparametricsmoothingmethodsjointlywithmixedmodeltechniques, are to be explored. It is also expected the development ofcomputationally-efficient estimationprocedures, aswell as the implementationofuser-friendlysoftware.Theprojecthasastronginterdisciplinarynature.Itinvolves(a) research in statistical methodology and computation; (2) knowledge onquantitative genetics; and (3) analysis of data from real agricultural fieldexperiments.ThethesisprojectwillbedevelopedintheGroupofAppliedStatistics(AS) of BCAM. Research stays at Biometris (www.biometris.nl) are expected tooccurthroughouttheresearchperiod.PhD Advisor: María Xosé Rodríguez Álvarez(http://www.bcamath.org/en/people/mrodriguez) and Fred van Eeuwijk(https://www.wur.nl/es/Persons/Fred-van-van-Eeuwijk.htm)

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JobPositiondescription.Requirements:

• Masterdegree(preferableinStatisticsorMathematics).Thecandidatemusthaveher/hisMasterDegreecompletedbeforetheincorporation.

• Applicantsmusthaveanexcellentacademicrecord.Skills:

• Strongmotivationtounderstandthebiologyandgeneticsofplantbreedingexperiments.

• Goodcommunicationandinterpersonalskills.• Abilitytoeffectivelycommunicateandpresentresearchideastoresearchers

withdifferentbackground.• Abilitytoclearlypresentandpublishresearchoutcomesinspoken(talks)and

written(papers)form.• GoodcommandofspokenandwrittenEnglish.

GroupLeader:

Ø FullName:Dae-JinLee,PhD(Mathematics,U.CarlosIII,2010)Ø Email:[email protected]Ø Researchgroupwebsite:http://www.bcamath.org/en/research/lines/AS

PhDAdvisor:

Ø FullName:MaríaXoseRodriguezAlvarezØ Email:[email protected]Ø Researchgroupwebsite:http://www.bcamath.org/en/research/lines/AS

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INPhINITOffer:INPhINIT targets the most motivated PhD candidates by addressing the researchareas in which Spain excels: Bio and Health Sciences, Technology, Physics,Engineering and Mathematics.INPhINIT recruits per call 57 Early-StageResearchersofanynationality,whoenjoya3-yearemploymentcontractattheResearchCentreoftheirchoiceamongthoseselectedandawardedbytheSpanishMinistryofEconomyandCompetitiveness("SeveroOchoa"centresofexcellenceand"MariadeMaeztu"unitsofexcellence)andtheSpanishMinistryofHealth("CarlosIIIcentres of excellence"). In addition, researchers establish a personal careerdevelopment plan including trasnational, intersectoral and interdisciplinarymobility opportunities, and attend a full range of complementary trainingcoursesandworkshops."la Caixa" Foundation will select international candidates. Subsequently, theselectedcandidates,willproposetheResearchCentreandthepredoctoralpositioninwhichhe/shewouldliketodotheresearchproject.IfthereisagreementbetweentheCentre,thesupervisor(predoctoralresearcherwhopresentedtheposition)andthecandidate,thefellowshipwillbeawardedtothecandidate. Fellowshipprovisions:

- 3-yearscontract- Recruitment date: September / October 2018. January 2019 under

extraordinarycircumstances.- Fundingperfellow:115.092euros

o 104.400euros (34.800eurosperyear) includingsalary,employeesocial security contribution, income taxes and all compulsoryemployers’contributions.

o 10.692 euros (3.564 euros per year) for research costs such asconferencesandworkshopsattendance,short-stays,consumablesandintellectualpropertycosts,amongothers.

- PhDAwardof7.500euroswillbegrantedtoresearchersthatsubmittheirthesiswithin6monthsaftertheendofthefellowship.

- Complementarytrainingprogramme:o TechnologyTransferandEntrepreneurshipworkshopsbyOxentia.o ProfessionalandCareerDevelopmentsessionsbyVitae.o High‐qualityacademicandindustrialsecondments.o Participationinoutreachandsocialevents.

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HowtoApply1. Clickinhttps://hosts.lacaixafellowships.org/finder,clickinRESEARCH

CENTREandchoose“BasqueCenterforAppliedMathematics-BCAM”

2. Click in “SEARCH” and the displayable will list the positions offered

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3. Click in the selected PhD Offer and click in “START THE APPLICATION”

4. The system will open a new window with the application website https://www.lacaixafellowships.org/index.aspx. Click in “Please register” for new applicants.

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5. After the registration, the system will send to you the confirmation email and the link to access into the system. Now you are in the position to access into the application system. Please choose INPhINIT: Doctorate in Spanish Research Centre of Excellence

6. Nowyouare in theposition to fill theapplication form,upload the requireddocumentsandchoosetheprojectthesis.Tochoosetheprojectthesis,clickin“StudiestobePursued”,choosethecentreandtheposition

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Eligibilityrequirements

- Atthepublicationdateofthefinallistofselectedcandidates(29may2018),candidates must be in the first four years (full-time equivalent researchexperience) of their research careers and not yet have been awarded adoctoraldegree.

- Atthetimeofrecruitment,candidatesmustcomplywithoneofthefollowingoptions:

o TohavecompletedthestudiesthatleadtoanofficialSpanish(orfromanother country of the European Higher Education Area) universitydegreeawarding300ECTScredits, ofwhichat least60ECTScreditsmustcorrespondtomasterlevel.

o Tohavecompletedadegreeinanon-Spanishuniversitynotadaptedtothe European Higher Education Area that gives access to doctoralstudies. The verification of an equivalent level of studies to the onesmentionedabovewillbemadebytheuniversitywhentheadmissionprocedurestarts.

- Mobility Rule: Candidatesmustnothave residedor carriedout theirmainactivity(work,studies,etc.)inSpainformorethan12monthsinthe3yearsimmediately prior to the publication date of the final list of selectedcandidates(29may2018).Shortstayssuchasholidayswillnotbetakenintoaccountwhencalculatingthemobilityrequirement.

- DemonstrablelevelofEnglish(B2orhigher). EvaluationandselectionprocessINPhINIT aims to recruit excellent Early-Stage Researchers with very solidtheoreticalbackgrounds,withcuriosityandambition;withincipientskillstoexpressthemselves clearly and defend their ideas with creativity, independence andoriginality.Researchersmaybe focusedontheacademicsideorbemore industry-oriented.Theevaluationcriteriaandscoresdefinedtoachievethisgoalare:PHASE1-REMOTEEVALUATION:

- Academic record and CurriculumVitae (weight 50%): academicand/orprofessional curriculum in relation to the stage of the candidate’scareer;Motivation and statement of purpose (weight 30%): theoriginality, innovationandpotential impactof theproposedproject,andthechoiceoftheResearchCentrewillbeassessed;

- Letters of reference (weight 20%): reference letters supporting thecandidacywillbeassessed taking intoaccount the specificityof the contentwithregardtothecandidate’sprojectaswellastheprofileofthepeoplewhosignthem.

PHASE2-FACE-TO-FACESELECTION:

- Candidate’spotential(weight40%): inordertohaveageneralperceptionofthecandidate’spotential,expertswillpayattentionto“soft”skills,abilitytopresent easily a complex reasoning, teamworking; and capabilities such as

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independent reasoning, originality, entrepreneurship, leadership, amongothers.

- Motivation and statement of purpose (weight 30%): expertswill assesstheimpactoftheprojectforthecandidateandthesociety;projectinnovation,originality and feasibility; and candidate’s capabilities with regard to thescopeoftheproject.Academicbackgroundandtheoreticalfundamentals(weight 30%): experts will assess the consistency of the candidate’sacademicbackgroundandCVintheareachosentocarryoutthePhD.

Accordingtothenumberofapplicationsreceived,theremaybeapre-selectionphasebasedonthefinalacademicmarksobtainedfortheBachelorstudies.