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Population level information management for crop wild relatives (PLIS) C.U. Germeier, J.M. Iriondo, L. Frese, C. Höhne, M. Enders, S.Kell. Tasks. Population level information systems for model crops ( Avena , Beta , Brassica , Prunus ). - PowerPoint PPT Presentation
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Population level information management for crop wild relatives
(PLIS)
C.U. Germeier, J.M. Iriondo, L. Frese, C. Höhne, M. Enders, S.Kell
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Population level information systems for model crops (Avena, Beta, Brassica, Prunus)
Tasks Tasks
- Development of information models for in situ management of plant genetic resources field work on the population level.
- Integration of historical occurrence (distribution) data.
- Propose concepts for data exchange and the integration of project results in existing information systems (e.g. the European Central Crop Databases).
- Development of a web application for information on already known sites and additional tools supporting in situ field work.
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Ex Situ
Accession
In Situ
(Protected) Area
Population Level Information in the world of genetic resources documentation
Population Level Information in the world of genetic resources documentation
Occurrence is collected n1
is within a1
n
CharacterisationEvaluation
Site
Site in ex situ PGR databases: - mostly rough description (locality string) like:
Cabo de Gata, 2 km E of.- if geographic coordinates are available, it is
only point coordinates, no extension.
Site definition:geographically described or referenced locality, but without explicit extension.Area definition:geographically described with explicit extension.
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Ex Situ
Accession
In Situ
(Protected) Area
Population Level Information in the world of genetic resources documentation
Population Level Information in the world of genetic resources documentation
Occurrence is collected n1
is within a1
n
CharacterisationEvaluation
Site
Location(administrative unit)
is within a1
n
Ecogeography:ClimateSoilHabitatVegetation
Individual
Patch
Population?
1
n
n1
Monitoring1 n
Nat
ura
l E
nvi
ron
men
t
Political Environment
is within a1
n
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Implementations: Implementations:
CWR CyberTracker (Mobile)CWR CyberTracker (Mobile) CWRIS-PLIS (Web)CWRIS-PLIS (Web)
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Techologies Techologies
MobileMobile WebWeb
CyberTracker Software- Workflow oriented- Graphical configuration
of workflows
JBoss Web Development Suite - Object oriented- PL: Java – JEE5 Frameworks
(Java Server Faces (JSF) – Seam – Hibernate)
- GMaps4Jsf: an Interface for the use of Google Maps Services with JSF
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Data Sources / DownloadsData Sources / Downloads
EUROSTAT administrative geographic units:
NUTS (Nomenclature of territorial units),
LAU (Local Administrative Units)
Protected areas:
NATURA 2000 sites database
Taxonomic reference:
CWRIS - Euro + Med, IDBB, EADB
Occurrence and genetic resources data:
The Global Biodiversity Information Facility (GBIF)
The European Internet Search Catalogue (EURISCO)
The USDA Germplasm Resources Information Network (GRIN). Data downloadable from PCGRIN
The European Central Crop Databases (IDBB, EADB)
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Searching through a geographic hierarchySearching through a geographic hierarchyData acquisition with Cybertracker
Web Search
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Searching through a taxonomic hierarchySearching through a taxonomic hierarchyData acquisition with Cybertracker
Web Search
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Working with historical dataWorking with historical data
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Working with historical data: Display result sets on a map
Working with historical data: Display result sets on a map
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Working with historical data: “Correct” resultsWorking with historical data: “Correct” results
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Working with historical data: “Correct” resultsWorking with historical data: “Correct” results
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Protected Area
Service
Coordinate
NUTS - LAU Service
Location
CWRIS Portal(s) (Crop, Management)
Site Protected Area
OccurrenceTaxon
Working with Historical Data: Suggestions for a Data Harmonisation LandscapeWorking with Historical Data: Suggestions for a Data Harmonisation Landscape
Taxonomy Service(s)
Taxon nameSystem
Valid nameSynonyms
Site Interpreter
„Locality String“
NUTS-LAU Unit
ProtectedArea
Taxon Interpreter
Taxon
Location Interpreter
Coordinate Transformer
OccurrenceService
e.g. GBIF Occurrence
GBIF
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Example: B. patellaris: Cabo de Gata, 2 km E of
Individual
Patch
Population?
CWR Field Data: Levels of AggregationCWR Field Data: Levels of Aggregation
Patch:Agglomeration of individuals of the same species: on revisiting, if a recorded patch area overlaps with a previous recorded one, they are considered the same patch. After fusion one of them is considered successor of both.
Individual: Plant found at a certain time on a certain place. Can be revisited, if marked.
Population definition: Individuals with sexual recombination.-> defined genetically, not geographically-> in the field we can record only individuals and patches-> aggregation to populations needs genetic analysis
Reference point (Site): geogr. described or referenced without explicit extension.
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Levels of aggregation in the CyberTracker Application - natural structuration
Levels of aggregation in the CyberTracker Application - natural structuration
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Levels of aggregation in the CyberTracker Application – experimental designs
Levels of aggregation in the CyberTracker Application – experimental designs
AGRI GENRES 057: An Integrated European In Situ Management Work Plan (AEGRO), 13-15 September, 2010, Funchal, Madeira
Thanks for your attention
