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Polymorphisms in CD1a and susceptibility to mTb. Emily Ford 5/29/2012. Acknowledgments:. Thomas Hawn Chetan Seshadri Meera Shenoy Glenna Peterson Rick Wells. NA 1/34. - PowerPoint PPT Presentation
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Polymorphisms in CD1a and susceptibility to mTb
Emily Ford5/29/2012
Acknowledgments:
• Thomas Hawn Chetan SeshadriMeera ShenoyGlenna PetersonRick Wells
NA 1/34McMichael AJ, JR Pilch, G Galfre, DY Mason, JW Fabre, C Milstein. 1979. Eur J Immunol 9 (3): 205-210. A human thymocyte antigen defined by a hybrid myeloma monoclonal antibody.
1984 – Nobel Prize - Niels K. Jerne, Georges J.F. Kohler, Cesar Milstein
“The dissection of the immune
response by the hybridoma technique”
Milstein C. Nobel prize lecture. 1984.
Cluster of Differentiation (CD)
Cluster analysisof the original 139 human antibody/antigen complexes
Bernard, A and L Boumsell (1984). Human Immunology 11: 1-10. IUIS-WHO Nomenclature Subcommittee (1984). Bull WHO 62 (5): 809-811.
CD1
• Sequence lies on chromosome 1• Significant sequence homology with MHC-I• Associates with beta 2-microglobulin • Expressed on antigen presenting cells (APCs)
Porcelli S, MB Brenner et al. (1989). Nature 341 (6241): 447-450.Brigl M and MB Brenner. (2004). Annu Rev Immunol 22: 817-890.
CD1D CD1A CD1C CD1B CD1E
MOLT-4(CD1)
IDP2 IDP2
IDP2
IDP2
IDP2
Brenner MB, J McLean et al. (1987.) Nature 325: 389-394
CytotoxicCD4-8- T cells
CD1-transfected cells
CD1cPorcelli S, MB Brenner et al. (1989). Nature 341 (6241): 447-450.
IDP2
BK6
CD1-expressing cells can be recognized and lysed by specific CTLs
CD1a
CTLs will respond to MTb in the presence of CD1
Porcelli, S, CT Morita, MB Brenner. (1992). Nature 360: 593-597
APC
DN1
DN1
DN1
DN1
?
CD1 presents lipid antigens
Beckman EM, SA Porcelli et al. 1994. Nature 372: 691-4
CD8+ CD1-responsive T cells can cause intracellular lysis of mycobacteria
Stenger S, RJ Mazzaccaro et al. 1997. Science 276: 1684-1687.
CD1 family structure
Van Rhijn I, DM Zajonc et al. (2005). Curr Opin Immunol 17(3): 22-29.
Sugita, M, DB Moody et al. 1998. Clinical Immunology and Immunopathology 87 (1): 8-14.
Overview and homology w/ known MHC presenting processes
Tb: How is it so good at getting around our immune system?
Coding region
Untranslated region
Are SNPs in CD1a Associated with Expression?
• Experimental Method– Collect blood from healthy individuals in Seattle (N=21)– Genotype for CD1a polymorphisms– Generate dendritic cells and analyze surface expression of CD1a
rs31
8102
9
rs85
8998
rs41
1089
rs22
6971
4
rs44
0419
rs38
9293
rs12
3071
6
Chromosome 1158,223,927 158,228,059
Peripheral BloodMononuclear Cells
CD1- Monocytes
CD1+
dendritic cellsGM-CSFIL-4
C Seshadri, not yet published
Distribution of CD1a expression in Seattle cohort
Donor 3
Donor 4
Donor 5
CD1a CD1c
C Seshadri, not yet published
CD1A Expression Stratified by SNP
Genotypic Recessive
p = 0.02 p = 0.006
Genotypic Recessive
p = 0.764 p = 0.472
Genotypic Test = Kruskal-Wallis rank testRecessive Test = Wilcoxon rank sums testC Seshadri, not yet published
Is CD1a-deficiency Associated with Tuberculosis?
• Combined Cohort Analysis– 762 Cord Blood Controls– 385 Pulmonary TB– 307 Meningeal TB
SNP Cohort Genotypic Analysis Recessive Analysis
TT CT CC P value TT+CT CC OR P value
rs858998 control 372(49%) 327(43%) 59(8%) 699(92%) 59(8%)
T/C TB all 337(49%) 271(39%) 82(12%) 0.023 608(88%) 82(12%) 1.60 0.009
pTB 188(49%) 149(39%) 47(12%) 0.037 337(88%) 47(12%) 1.65 0.014
Hypothesis: differences in the promoter region of CD1a may affect its expression
Promoter Intron Exon
Chromosome 1 – 5000kb
PGL4
1. Make plasmids containing CD1a variants
CD1a “HI”
CD1a “LO”
1kb
1kb
2. Try to get it into a cell
Lipofection Electroporation
cellcell
Results
The end!
• If there’s time – mysterious CD1d
• How did they move into dendritic cells?• They first had to make their own CD1 expressing cells,
then technology developed
• Ralph Steinman – PNAS from 1980s? – Dendritic cells were very hard to study! (rare, difficult to isolate) – Wesley Van Voorhees was his phd student
– GM-CSF IL-4 method to make dendritic cells (legend of figure 1) Nature paper
Human thymocytesNA 1/34
NA 1/34
HTA1/CD1
Human thymocytes
Other T-cell types also recognize CD1
• Reminder of T cell subsets
CD4-8-
CD4+
CD8+