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OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

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Page 1: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

OM

IM

RY ZSA

TUVWX

P

Q

1

3

Assembly

Secretion

ATP

Folding

2

Page 2: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2
Page 3: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2
Page 4: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

TypIV piliation (Pil)

PilD

A

OM

IM

Q

CBATP

R

Y Z

TUVWX

S

ATP

XcpA

Q

Protein secretion (Xcp)

P

Page 5: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Bacteria overproducing XcpT are covered with extracellular pilus-like appendages.

Transmission Electron Microscopy, Negative Staining

Individual fibrils

« Bundled »

The pseudopilus hallmarks

Page 6: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

XcpT is assembled in a multifibrillar structure calledtype II pseudopilus

TEM analysis, Immunogold labelling anti-XcpT

Type II pseudopilus

Type IV pilus

Flagella

Page 7: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Image FilteringOriginal Image

Fourier Transform

Filtered image

Enlargement

Page 8: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

The Secreton-Dependent Pathway (Type II)

C

P

Xcp

IM

OM

XcpQ

XcpR

ATPADP + Pi

Secretin

Traffic ATPase

Page 9: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

SÉCRÉTINE « TRAFFIC ATPASE »

SÉCRÉTION TYPE II YES YES

SÉCRÉTION TYPE III YES NO

SÉCÉRTION TYPE IV NO YES

DNA UPTAKE

GRAM+

NO YES

DNA UPTAKE

GRAM-

YES YES

TYPE IV PILI YES YES

PHAGE

FILAMENTEUX

YES NO

Page 10: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Molecular Mechanisms involving:

• Secretion

– Type II

– Type III

• Type IV Piliation

• Filamentous phage extrusion

• DNA uptake/Natural competence

• Assembly of S-layer proteins

• Secretion

– Type II

– Type IV

• Type IV Piliation

• Bacterial Conjugation

• DNA uptake/Natural competence

SECRETINS TRAFFIC ATPASES

Page 11: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

BfpB SecretinE. coli EPEC

Scmidt et al., J Bacteriol 2001 183:4848-4859

Page 12: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

LES SÉCRÉTINES TRANSPORTENT DE LARGES COMPLEXES

YscC PilQ XcpQ pIV

5 5-6 9-10 8

20 18 19-20 14

Type IIISecretion

Type IVpili

Type IISecretion

Filamentousphages

Inner diameter (nm)

Outer diameter (nm)

Process

Bitter & Tommassen, 1999, Trends in Microbiol., 7: 4-7

(12-14 subunits)

Page 13: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

PAO1 GENOME SEQUENCE

Stover et al., 2000, Nature, 406: 959-964

Traffic ATPase

Secretin

Page 14: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

hxcR

hplR

xcpR

pilT/pilU

hvbA

pilB

hxrA

0

1

2

3

4

5

66,3

Mb

Type IV piliation

Type IV piliation

Type II secretion

Traffic ATPases

W U P V T X Y Z Q R S

0

1

2

3

4

5

66,3

hxcQ

xqhC

xqhB

pscC Type III secretion

xqhA Type II secretion

xcpQ Type II secretion

pilQ Type IV piliation

Secretins

Page 15: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

P. aeruginosa hxc gene cluster

WT xcp hxc94 kDa

67

43

30

20

(Supernatant fraction, Phosphate starvation)

W U P V T X Y Z Q R S

QPRSTUVWXYZ

hxc

xcp

ApR

Mass Spectrometry

Page 16: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

0

50

100

150

200

250

300

100 200 300 400 500

growth time, min

PAO1 pMP220

PAO1 pMPTZ

PAO1 pMPVZ

phxcV-lacZ phxcT-lacZ

LapA (368) MFKRSLIAASLSVAALVSAQAMA-VTGGGASLPAELYK

lapB

LapB (370) MLKPMFGVVALTLLTSHTTLG-ATVTGGGASMPAKLYK

lapAhxc gene cluster

Tan & Worobec, 1993

Low molecular weight Alkaline Phosphatase

Page 17: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

• Identification of a second xcp-like gene cluster involved in type II secretion

• Hxc system is specifically involved in secretion of low molecular weight alkaline phosphatases

• Expression of the hxc gene cluster appeared to be coregulated with lap genes expression

Page 18: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Which alternative systems can assemble the type II pseudopilus ?

SecretinATP

fixation motif

Pseudopilins

Xcp system(type II secreton)

W PSTXYZ QR V Uxcp

Q Pil system

(type IV pili)A B C

Pilin

pil

Prepilin peptidase

xcpA/pilD

W U P V T X Y Z Q R S

Hxc system(type II secreton) hxc

Page 19: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Requirement for the Xcp, Hxc or Pil system in the assembly of the type II pseudopilus

STRAINS MOLECULAR MACHINERIES PSEUDOPILUS ASSEMBLY

Xcp Hxc Pil

WT + + + Yes

xcpZ-Q - + + Yes

xcpA - - - No

pilQ/hxcR + - - Yes

xcpRS/pilQ - + - Yes

xcpRS/hxcR - - + Yes

xcpRS/hxcR/pilQ - - - No

Page 20: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

hxcR

hplR

xcpR

pilT/pilU

hvbA

pilB

hxrA

0

1

2

3

4

5

66,3

Mb

Type IV piliation

Type IV piliation

Type II secretion

Traffic ATPases

0

1

2

3

4

5

66,3

hxcQ

xqhC

xqhB

pscC Type III secretion

xqhA Type II secretion

xcpQ Type II secretion

pilQ Type IV piliation

Secretins

Page 21: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

A flp / tad gene cluster in the P. aeruginosa genome

Kachlany S.C. et al., (2000), J. Bact., 6169-6176Actinobacillus actynomycetemcomitans

Traffic ATPaseSecretin

Secretin Traffic ATPase

flp

Page 22: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

A. actinomycetemcomitans adherence system:the « Flp pili »

A. actinomycetem-comitans

(negativ contrast)

Kachlany S.C. et al., (2001), Molecular microbiology, 40, 542-554

Bundled pili( electron microscopy)

- Gram-negative cocobacillus, agent of the juvenil periodontal disease

- Produces long fibrils of bundled pili responsible for non-specific adherence and autoaggregation

- Forms a tenacious biofilm on teeth

- Structural subunit of bundled pili is encoding by flp-1 gene. tad genes cluster encodes the assembly machinery of Flp pili

- Flp-1 is a member of the type IVB pilus sub-familly

Page 23: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Phylogeny of genes for secretion NTPases: Development of a diagnostickey for gene classification

Planet et al., Proc. Natl. Acad. Sci. USA, 2001, 98, 2503-2508.

Page 24: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

C

P

Xcp

IM

OM

ETA

SP

Sec Tat

XcpQ

The Secreton-Dependent Pathway (Type II)

XcpR

ATPADP + Pi

Page 25: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

The P. aeruginosa Tat system

E. coli

P. aeruginosa

Amino acid identity (%)in corresponding proteins

39 30 4457

tatA

tatA

tatC

tatC

hisE

tatD tatE

tatD

tatB

PA5071 tatB

Is the system functional ?

KmR

Page 26: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

The colicin A assay

OM

IM

OmpFBtuB

PALTol

pfColAColicin A (A B

 Viability of E. coli and P. aeruginosa strains upon pfColA production

 E. coli  P. aeruginosa

  WT WT (cai)a tatA-E WT tatC tatC (pTATC)

pMMB67EH + + + + + +

pRR-pfColA67

- + + - + -

Sec

SP

Tat

RR

Page 27: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

The P. aeruginosa Tat substrates ?PAK-TC PAK

94

67

43

30

20

PAK PAK

PAK-TC PAKxcpRZ

MTENWKFRRRTFLKHGAQAATLAGLSGLFPETLRRALAVPlcH38 aa

MISKSRRSFIRLAAGTVGATVATSMLPSSIQAALAIPlcN35 aa

Phospholipases C

Mass spectrometry

Page 28: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

Phospholipase C activity* in cell fractions

4.21

0.57

0.68

Cytoplasmic membrane

0.04<0.010.01PAK-TC (tatC)

0.164.740.03PAK-∆xcpRZ

0.100.502.80PAK

Wild-type

CytoplasmPeriplasmSupernatant Strain

* p-nitrophenyl-phosphatidylcholine as substrate

Page 29: OM IM R Y Z S A TUVWX P Q 1 3 Assembly Secretion ATP Folding 2

C

P

Xcp

IM

OM

ETA

SP

Sec

Plc’sRR

Tat

XcpQ

The Secreton-Dependent Pathway (Type II)

XcpR

ATPADP + Pi