1
The BioEnergy Science Center (BESC) is a U.S. Department of Energy Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of Science Abstract: Xylan constitutes a significant portion of biomass (e.g. 22% in corn stover used in this study). Xylan is also an important source of carbohydrates, besides cellulose, for renewable and sustainable energy applications. A currently used method for the localization of xylan in biomass is to use fluorescence confocal microscopy to image fluorescent dye labeled monoclonal antibodies that specifically bind to xylan. However, with the rapid adoption of Raman-based label-free chemical imaging techniques in biology, identifying Raman bands that are unique to xylan is critical for the implementation of the above label-free technique for in situ xylan imaging. Unlike lignin and cellulose that have long been assigned fingerprint Raman bands, specific Raman bands for xylan remain unclear. The major challenge is the cellulose in plant cell walls, which have chemical units highly similar to that of xylan. Here we report using xylanase enzymes to specifically remove xylan from the feedstock. Under varying degrees of xylan removal, with minimum impact to other major cell wall components, i.e. lignin and cellulose, we have identified Raman bands that could be further tested for chemical imaging of xylan in biomass in situ. Band (cm-1) Possible Raman Mode Previously Published Band Assignments 1750 1750 v(C=O) ester Hemicellulose (Xyloglucan, glucomannan) and pectin. Plant Methods 2014, 10:14 1460-1470 1459 δ(CH2), δ(COH) Cellulose and hemicellulose, Plant Methods 2014, 10:14. 1463 Glucomannan, Applied spectroscopy, vol 51, number 11, 1997, 1648-1655. 1471 Xylan, Applied spectroscopy, vol 51, number 11, 1997, 1648-1655 1461 δ(CH2) scissors Cellulose II, Cellulose 8: 49-57, 2001 1472 δ(CH2), δ(COH) Cellulose, Cellulose-Biomass Conversion, chapter 8. 1430-1500 HCH bending and some COH Cellulose, IPC technique series number 220. 1475 or 1477 HCH and HOC bending Cellulose, IPC technique series number 226. 1220-1230 1234 τ(CH2), δ(HCC), δ(HOC), δ(COH) Cellulose I, Cellulose 8: 49-57, 2001. 1247 δ(CH), δ(COH) Xylan, Applied spectroscopy, vol 51, number 11, 1997, 1648-1655. 1256 δ(CH), δ(COH) Hemicellulose, Plant Methods 2014, 10:14. 1010 1010 CC and CO stretching Cellulose, IPC technique series number 226. Cellulose Ib Cellulose II Lignin Glucose Xylose Cellulose Ia Xylan Cellulose Probing Xylan-Specific Raman Bands for Label-Free Imaging Xylan in Plant Cell Wall 0 10 20 30 40 40 60 80 100 Cell Wall Xylan (%) Enzyme Concentration (mg/g of xylan) 200 400 600 800 1000 1200 1400 1600 1800 2000 Raman Shift (cm-1) % Xylan on cell wall 100% 75% 65% 55% 45% 200 400 600 800 1000 1200 1400 1600 1800 2000 Raman Shift (cm-1) Xylan oak spelts Xylan birchwood Xylo oligo Dp2-7 Xylose Xylan#12077 Yining Zeng 1,3 , John M. Yarbrough 1,3 , Ashutosh Mittal 1 , Melvin P. Tucker 2,3 , Todd Vinzant 1 and Michael E. Himmel 1,3 1 Biosciences Center, 2 National Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401 3 BioEnergy Science Center (BESC), Oak Ridge National Laboratory, PO Box 2008 MS6341, Oak Ridge, TN 37831 Controlling the Amount of Xylan in Cell Wall Impact of Cell Wall Xylan Concentration Change to Raman Spectrum Raman Spectrum of Xylan Model Compounds Raman spectra of plant cell walls arise primarily from the three major components: lignin, cellulose and hemicellulose (mostly xylan). Lignin’s primary Rman contribution is located at 1600 cm -1 ,with other small bands. Although cellulose and xylan have highly similar chemical substituent groups, the groups have different organization and local environments. Cellulose has highly ordered structures (such as commonly found cellulose Ia, Ib and II). These highly ordered structures distribute energy among the vibrational modes differently than found in the disordered structures such as in xylan. To separate cellulose and xylan in the Raman spectrum, we developed an enzymatic assay that removes significant xylan with minimum impact on cellulose and lignin. Structural Considerations for Raman Spectroscopy Acknowledgement: We acknowledge research support from the BioEnergy Science Center, a DOE Bioenergy Research Center. Conclusion: Our results have shown that there are several Raman bands that are sensitive to xylan concentration. They are highly promising for xylan detection. We have tested a few on pretreated CS, and further testing is in progress for more variety of samples. 100% Xylan 45% Xylan 30% Xylan 1230 cm -1 1190 cm -1 1230cm -1 -1190 cm -1 100% Xylan 45% Xylan 1470 cm -1 1425 cm -1 1470cm -1 -1425 cm -1 Raman Bands that are Sensitive to Xylan Concentration Test on Organosolv Pretreated CS Rind with Some Candidate Raman Bands Xylan % is analyzed by compositional analysis. No significant digestion of cellulose/lignin has been detected. The information contained in this poster is subject to a government license. 2015 Annual BESC Retreat, Chattanooga, Tennessee June 15-17, 2015 NREL/PO-2700-64484

New Probing Xylan-Specific Raman Bands for Label-Free Imaging … · 2016. 7. 7. · Glucose Xylose . Cellulose Ia 45% Xylan. Xylan 100% Cellulose . Probing Xylan-S. pecific Raman

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Page 1: New Probing Xylan-Specific Raman Bands for Label-Free Imaging … · 2016. 7. 7. · Glucose Xylose . Cellulose Ia 45% Xylan. Xylan 100% Cellulose . Probing Xylan-S. pecific Raman

The BioEnergy Science Center (BESC) is a U.S. Department of Energy Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of Science

Abstract: Xylan constitutes a significant portion of biomass (e.g. 22% in corn stover used in this study). Xylan is also an important source of carbohydrates, besides cellulose, for renewable and sustainable energy applications. A currently used method for the localization of xylan in biomass is to use fluorescence confocal microscopy to image fluorescent dye labeled monoclonal antibodies that specifically bind to xylan. However, with the rapid adoption of Raman-based label-free chemical imaging techniques in biology, identifying Raman bands that are unique to xylan is critical for the implementation of the above label-free technique for in situ xylan imaging. Unlike lignin and cellulose that have long been assigned fingerprint Raman bands, specific Raman bands for xylan remain unclear. The major challenge is the cellulose in plant cell walls, which have chemical units highly similar to that of xylan. Here we report using xylanase enzymes to specifically remove xylan from the feedstock. Under varying degrees of xylan removal, with minimum impact to other major cell wall components, i.e. lignin and cellulose, we have identified Raman bands that could be further tested for chemical imaging of xylan in biomass in situ.

Band (cm-1) Possible Raman Mode Previously Published Band Assignments

1750 1750 v(C=O) ester Hemicellulose (Xyloglucan, glucomannan) and pectin. Plant Methods 2014, 10:14

1460-1470 1459 δ(CH2), δ(COH) Cellulose and hemicellulose, Plant Methods 2014, 10:14.

1463 Glucomannan, Applied spectroscopy, vol 51, number 11, 1997, 1648-1655.

1471 Xylan, Applied spectroscopy, vol 51, number 11, 1997, 1648-1655

1461 δ(CH2) scissors Cellulose II, Cellulose 8: 49-57, 2001 1472 δ(CH2), δ(COH) Cellulose, Cellulose-Biomass Conversion, chapter 8. 1430-1500 HCH bending and some COH Cellulose, IPC technique series number 220. 1475 or 1477 HCH and HOC bending Cellulose, IPC technique series number 226.

1220-1230 1234 τ(CH2), δ(HCC), δ(HOC), δ(COH) Cellulose I, Cellulose 8: 49-57, 2001. 1247 δ(CH), δ(COH) Xylan, Applied spectroscopy, vol 51, number 11, 1997,

1648-1655. 1256 δ(CH), δ(COH) Hemicellulose, Plant Methods 2014, 10:14.

1010 1010 CC and CO stretching Cellulose, IPC technique series number 226.

Cellulose Ib

Cellulose II

Lignin

Glucose Xylose

Cellulose Ia

Xylan Cellulose

Probing Xylan-Specific Raman Bands for Label-Free Imaging Xylan in Plant Cell Wall

0 10 20 30 4040

60

80

100

Cell W

all X

ylan

(%)

Enzyme Concentration (mg/g of xylan)

200 400 600 800 1000 1200 1400 1600 1800 2000 Raman Shift (cm-1)

% Xylan on cell wall

100%

75%

65%

55%

45%

200 400 600 800 1000 1200 1400 1600 1800 2000 Raman Shift (cm-1)

Xylan oak spelts

Xylan birchwood

Xylo oligo Dp2-7

Xylose

Xylan#12077

Yining Zeng1,3, John M. Yarbrough1,3, Ashutosh Mittal1, Melvin P. Tucker2,3, Todd Vinzant1 and Michael E. Himmel1,3 1Biosciences Center, 2National Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401

3BioEnergy Science Center (BESC), Oak Ridge National Laboratory, PO Box 2008 MS6341, Oak Ridge, TN 37831

Controlling the Amount of Xylan in Cell Wall

Impact of Cell Wall Xylan Concentration Change to Raman Spectrum

Raman Spectrum of Xylan Model Compounds

Raman spectra of plant cell walls arise primarily from the three major components: lignin, cellulose and hemicellulose (mostly xylan). Lignin’s primary Rman contribution is located at 1600 cm-1,with other small bands. Although cellulose and xylan have highly similar chemical substituent groups, the groups have different organization and local environments. Cellulose has highly ordered structures (such as commonly found cellulose Ia, Ib and II). These highly ordered structures distribute energy among the vibrational modes differently than found in the disordered structures such as in xylan. To separate cellulose and xylan in the Raman spectrum, we developed an enzymatic assay that removes significant xylan with minimum impact on cellulose and lignin.

Structural Considerations for Raman Spectroscopy

Acknowledgement: We acknowledge research support from the BioEnergy Science Center, a DOE Bioenergy Research Center.

Conclusion: Our results have shown that there are several Raman bands that are sensitive to xylan concentration. They are highly promising for xylan detection. We have tested a few on pretreated CS, and further testing is in progress for more variety of samples.

100%

Xyl

an

45%

Xyl

an

30%

Xyl

an

1230 cm-1 1190 cm-1 1230cm-1 -1190 cm-1

100%

Xyl

an

45%

Xyl

an

1470 cm-1 1425 cm-1 1470cm-1 -1425 cm-1

Raman Bands that are Sensitive to Xylan Concentration

Test on Organosolv Pretreated CS Rind with Some Candidate Raman Bands

Xylan % is analyzed by compositional analysis. No significant digestion of cellulose/lignin has been detected.

The information contained in this poster is subject to a government license. 2015 Annual BESC Retreat, Chattanooga, Tennessee

June 15-17, 2015 NREL/PO-2700-64484