40
Facts and Follies of remote sensing of tree crops Professor Andrew Robson [email protected]

New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

  • Upload
    others

  • View
    4

  • Download
    0

Embed Size (px)

Citation preview

Page 1: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Facts and Follies of remote sensing of tree crops

Professor Andrew [email protected]

Page 2: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Not all about the Tech

Cost/ benefitof adoption

Linking with core disciplines

Who do you Trust?

Address relevant constraints

Appropriate calibration,validation

The Tech

What The Farming ?

Page 3: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

WHAT is Remote sensing:

Defined as the acquisition of information about an object or phenomenon without making physical contact…

Page 4: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Sensor Resolution

Temporal Spectral

SpatialRadiometric

Frequency of data collection

Number and width of spectral bands

(Multispectral/ Hyperspectral)

Pixel size and area covered (swath)

Data sensitivity (bits)8 bits (28)- 256 level Landsat11 bit (211)- 2048 levels IKONOS16 bits (216)- 10000 levels WV3 SWIR

Page 5: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Spectral characteristics of a leaf

http://www.innovativegis.com/basis/pfprimer/topic7/Topic7-8.gif

NDVI

NDVI: is a good indicator of tree vigour (size and health).However, other Vis may be better correlated to the parameters you are interested in.

Page 6: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Examples of structural and pigment based vegetation indices

Page 7: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Hyperspectral (Spectral Resolution)

http://www.markelowitz.com/Hyperspectral.html

It is the Holy Grail?

Page 8: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

IKONOS 0.8m resolution

Sentinel 10m resolution

Cane

Macadamia trees

0.8 m image: $24 km2 10 m image: $0.00km2

Spatial Resolution

Page 9: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Remote Sensing Technologies

Satellite Field based Sensors

Tractor based Sensors Airborne SensorsUAV/ Drone

Page 10: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

https://earthzine.org/wp-content/uploads/2012/08/CEODA-RD-Cover.jpg

Satellite

Page 11: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Comparison of relevant satellite platforms for Ag.

WV-3 Sentinel-2 Geo-Eye -1 RapidEye Spot 6-7Landsat 8-

OLI

Revisit time > 5 days 5 days > 3 days 1-6 days As required 16 days

Pancromatic

Resolution0.31m N/A 0.46m N/A 1.5m 15m

Multispectral

Resolution 1.24m

10m, 20m

and 60m 1.84m 5m 6m 30m

Number of

Multispectral

Bands

8 (16 with

SWIR) 13 4 5 4 10

Cost ~$45/km2 Free ~$30/km2 ~$1.60/km2 ~$1.80/km2 Free

Satellite Sensor

~$5.50/ha ~$3.00/ha ~$0.16/ha ~$0.18/ha

Page 12: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Drones, UAS, UAVS, RPAS etc.

Fixed WingQuadcopters Octocopters

Blimps and balloons HelicoptersOther????

Page 13: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Benefits:- Can be deployed at short notice (between cloud)- Relatively low cost platform- Can provide ‘over head’ imagery of

agricultural crops in varying forms(RGB, NIR, Thermal, Lidar).

- Optical height models

Limitations:- Generally uncalibrated imagery- Limited flight time- Line- of- sight restrictions- Privacy issues- Require certification to operate commercially.- On-going maintenance and repair costs.- Data processing and interpretation

Page 14: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Field work – RPAS campaign

27/10/2017 Research Project Mid-term Review 14

Ground control marker

Mission planningDrone and camera

Reflection targets

28 flight configurations:

• Above ground altitude

• Image side overlap

• Flight speed

• Flight time

• Flight pattern

100 m75 m50 m25 m

60%70%80%90%

3 m/s5 m/s8 m/s10 m/s

>40°40 °30 °<20 °

Optimal Settings for Remotely Piloted Aircraft Systems Applications in HorticultureYu-Hsuan Tu Supervisors: Stuart Phinn, Kasper Johansen, and Andrew Robson

Page 15: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

• Flying along the tree row improves the accuracy

• Flying at high solar elevation

• Flying with a gimbal improves the accuracy

• Flying with high forward overlap improves the accuracy (80%)

• Higher image resolution improves the accuracy

• recommended flying altitude is around 75 m AGL to obtain a 2 cm

• Recommended image sidelap is around 75%

• Ground calibration panes for radiometric and geometric correction

Yu-Hsuan Tu : UQ and UNE PhD student

Page 16: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

UAV camera systems

https://www.micasense.com/rededge/http://diydrones.com/profiles/blogs/sequoia-in-the-wild

Parrot SequoiaMicro Sense

Blue: 475nm x 20nm,Green: 560nm x 20nm, Red: 668nm x 10nm, Red-Edge: 717nm x 10nm, Near Infrared: 840nm x 40nm.

Green: 500nm x 40nm, Red: 660nm x 40nm, Red-Edge: 735nm x 10nm,

Near Infrared: 790nm x 40nm.

Slant Range

Green: 550nm x 40nm width, Red: 650nm x 40nm width, Red-Edge: 740nm x 10nm width,

Near Infrared: 850nm x 100nm width.

http://www.slantrange.com/3p/

Blue: 446nm x 60nm width Green: 548nm x 45nm width Red: 650nm x 70nm width Red Edge: 720 nm x 40nm width Near-Infrared (NIR): 840nm x 20nm width

https://sentera.com/product-category/sensors/

Sentera

Page 17: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

2016-17, 2 fields, 4 varieties, 3 sensors

Micro sense

Comparable Out puts: Foliar Nitrogen measurement in Rice

Page 18: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Is 2 cm imagery the best?

2 cm resolution good for measuring individual canopies

Can loose spatial integrity of the orchard

Reduce spatial resolution to get ‘zones’

Page 19: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

How you will use the data is an important consideration

Page 20: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

3D modelling of tree growth factors

P.J. Zarco-Tejada et al (2014)

RMSE 33 cm

P.J. Zarco-Tejada et al (2014)

Rahman et al (2018)

Page 21: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Thermal

Figure 3. Thermal image filtering; (a) original infrared thermography, (b) corresponding

temperature frequency distribution of the original image, (c) infrared thermography after

filtering, (d) corresponding temperature frequency distribution after filtering.

https://www.nnbusinessview.com/news/drone-technology-with-deep-roots-in-northern-nevada-

primed-for-the-future/

Salgadoe et al (2019)

Need a wet and dry reference target

Mathematical approach

Page 22: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Serving the needs of farmers since 2002

Industry Examples: Integration of

technologies

Page 23: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Mapping block yield

False colour WV image with sample locations

Area: 11.3 ha (9*6 spacing)Ave. 3.7 T/ha (20 kg/ tree)Total: 42 tonnes

Linear relationship between measured yield and corresponding canopy spectral data (VI)

Extraction of canopy data for all trees

Calculation of average/ total block yield and derivation yield

map

Page 24: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Satellite Imagery: Identifying spatial and temporal variability in tree vigour, yield, fruit size, phytophthora, nutrition etc.

Classified NDVI of orchard block (Worldview imagery).

High NDVI Mid NDVI Low NDVI

Page 25: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Improvement on current methods

Comparison between actual yield (t/ ha) to that predicted from satellite imagery and that made by visual assessment from growers. Note that no growers estimate was supplied for Block 5.

Page 26: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Yield forecasting accuracies for Mango

Comparison of actual yield (kg) to that predicted from WV3 imagery for 2016 -17 and 2017 – 18 seasons for three mango blocks in Northern Territory.

Predict loss

Page 27: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

High Medium Low

TREE VIGOUR CLASS

Control Treatment

One of classified NDVI Avocado blocks surveyed in this study

Increasing yield via targeted pollination

- 5 blocks/ 18 trees per block- 4 reps of low, medium and high vigour received additional

hand pollination. - 2 reps of each class retained as controls.

Page 28: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

R G B

ave temp 24.7 24.1 23.9

max temp 34.5 32.6 31.4

min temp 18.1 18.3 18.4

ave RH 78.8 80.5 80.9

max RH 100.3 100.0 99.7

min RH 46.9 50.5 53.2

Temperature data

Low NDVI trees higher max temp (~3+degC), and lower average relative

humidity than the High NDVI trees.

Block 2 R G B

ave temp 24.2 23.8 23.6

max temp 33.0 31.4 30.1

min temp 18.6 18.8 19.1

ave RH 78.6 79.2 80.7

max RH 99.3 98.4 97.8

min RH 47.2 50.2 54.9

(20 Nov 2015 to 28 May 2016)

12 sensors per block4- low NDVI4- mid NDVI4- high NDVI

Avocado

Mac

Possibility for thermal time model

development for Avocado maturity

Page 29: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Linking RS with Sensor Networks• High density sensor networks across our farms

Sensor Network o What density is actually needed?

o Sensors cost money to purchase and then to maintain.

o Data collection, QA’ing and analysis?

o Would a lower density be sufficient

o What information do you actually need?

Page 30: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Example Peanut industry: Aflatoxin warningAflatoxin risk is high when soil temperatures reach 25ᵒC to 32ᵒC and low soil moisture. Strategically located sensors (within farm and across regions) linked with an App warning system can assist with improved management to reduce risk/ harvest segregation etc.

Page 31: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

National mapping of commercial orchards

Page 32: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Regional Mapping

Young

trees

Page 33: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Serving the needs of farmers since 2002

Cyclone Debbie

BIOSECURITY

Page 34: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Yield TCH

2018 sugarcane yield forecasting accuracies from both SPOT and Landsat algorithms (12 Australian growing regions). Algorithms also applied to derive image products for ~100,000 individual crops annually.

102

82 83

116

6773

82

68

105

145

90

127

101

149

86.786

68

126

85

92

59

100

130

86

124

98

132

86 8683

124

73 75

91

70

116

166

102

127

118

144

83.5

0

20

40

60

80

100

120

140

160

180

Region 1 Region 2 Region 3 Region 4 Region 5 Region 6 Region 7 Region 8 Region 9(1yr)

Region 9(2yr)

Region10 (1yr)

Region10 (2yr)

Region11 (1yr)

Region11 (2yr)

Region12

Ave

rage

Re

gio

nal

Yie

ld (

TCH

)

Sugar Growing Region

Actual ave regional Yield (TCH)

Pred. SPOT Yield estimate (TCH)

Pred. Landsat 'time series' Yield estimate (TCH)

Page 35: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Machine Learning

Example: Onesoil:5 years development1 million users

Page 36: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

20 crop types in Florida Peanut crops in Florida

USDA:64,750 ha of Peanut

~6% accuracy

Page 37: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Summary

• Remote sensing is an effective ‘tool’ for identifying the spatial and temporal variability in tree health and production.

• It needs the appropriate calibration and validation when used to predict specific variables.

• It is a ‘tool’ to help with core sciences (agronomy, pathology, breeding etc). It is not a silver bullet.

• Just cos it looks pretty doesn’t make it right

Page 38: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Where to for Citrus

• Currently doing a small pilot study with WA citrus and Arbocarbon

• Submitted a tender to Hort. Inn. evaluating the best platforms and analytics to detect host trees in NT urban areas.

• ‘Rural Research and Development for Project’ submitted with decision this month.

Page 39: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

Launched next month

Objectives

Coordinate the delivery of remote sensing capabilities by approved providers, including

researchers, public and commercial services.

Facilitate greater cross-sectoral collaboration and shared access to expertise and infrastructure.

Accelerate innovations in remote sensing technologies and their translation into on-farm

applications.

Deliver education and extension programs to enable the adoption of farming informatics and

sensing technologies, as well as help develop demand for these industry capabilities.

Page 40: New Facts and Follies of remote sensing of tree crops · 2019. 6. 10. · visual assessment from growers. ... •Remote sensing is an effective tool for identifying the spatial and

UNE Precision Agriculture and Remote sensing

Professor Andrew [email protected]