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Neurology Department Fourth Annual Research Blitz Fall 2019

Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

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Page 1: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Neurology Department Fourth Annual Research Blitz

Fall 2019

Page 2: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Movement Disorders/Neurodegeneration divisionLeo Almeida - DBS

Melissa Armstrong – DLB/PDD, patient engagement, quality/guidelines

Wissam Deeb – Dystonia, Tourettes

Matthew Farrer – neurogenetics

Chris Hess – neurophysiology tremor, myoclonus, dystonia

Irene Malaty – PD outcomes, trials; Tics/Tourettes

Demetri Maraganore – Brain Health

Karen McFarland – transcriptomics, bioinformatics, ataxias, AD

Nick McFarland – neurodegeneration, biomarkers, PD/atypical parkinsonism, Huntington disease

Michael Okun – DBS

Addie Patterson – education and palliative care

Diego Rincon-Limas – Drosophila models of neurodegeneration

Adolfo Ramirez-Zamora – DBS, trials, collaborative projects

Aparna Shukla – Dystonia, tremor, rTMS

Yuquig Li – Dystonia, RLS models

Neil Weisbrod – palliative care in AD

Page 3: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Leo Almeida, MD

Current projects◦ DTI/tractography in DBS outcomes for movement disorders

◦ Augmented and Virtual reality for Freezing of Gait in Parkinson’s disease

◦ Novel stimulation patterns in DBS for movement disorders

◦ Use of exoskeleton as adjunctive therapy for movement disorders

Potential resident projects◦ Retrospective database review

◦ Side projects from the main projects above

◦ Case reports and series

Page 4: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Wissam Deeb, MD

Tic detector◦ Collaboration with Dr. Gunduz (biomed engineering)

◦ Surface EMG sensors (Delsys Trigno)

◦ Algorithm to detect tics

◦ Algorithm to characterize tics by frequency, severity, and location

VR-augmented CBIT◦ Collaboration with Dr. Santoso (digital worlds institute)

◦ Different VR settings to assess antecedent and consequent factors

Page 5: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

1) Neurogenetics – from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery research

2) Translational neuroscience & drug development – modeling mutant gene dysfunction in mice via cre-loxP/AAV genome modification, focusing on behaviour, brain biochemistry and neurotransmitter physiology.

https://www.ncbi.nlm.nih.gov/pubmed/?term=farrer+m

Matt Farrer PhD.,Professor Of Neurology (Molecular Neuroscience)Norman Fixel Institute for Neurological Diseases,McKnight Brain Institute, L5-101D,Director, Clinical Genomics Program,UF Clinical and Translational Science Institute,University of Florida

E: [email protected]: 352.273.5611C: 352.538.8361Admin. support: E. [email protected]. 352 273 5550

Predict and Prevent – projects in PD, AD, brain aging & seizure disorders

Page 6: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Christopher Hess, MD

Current Projects◦ High Density EEG to study the cortical oscillations

associated with head turning in cervical dystonia and healthy controls

◦ NPF Apprise Clinical Trial (wearable sensors in PD)

◦ Tremor and myoclonus physiologic analyses

Possible Resident Projects◦ Movement disorders case reports

◦ CMDNR INFORM database retrospective studies

Center for Movement Disorders and Neurorestoration

Page 7: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Yuqing Li, PhD Current projects

◦ Animal models and pathophysiology of DYT1 dystonia (NIH R01 with Dr. Vaillancourt), using conditional knockin and knockout mice, brain imaging to map the pathological brain circuits.

◦ Animal models and pathophysiology of restless legs syndrome (NIH R01), using conditional knockout mice, brain imaging, and patch clamp recording.

◦ Chemogenetic or DREADD manipulation of striatal cholinergic interneurons in DYT1 dystonia as a potential treatment for DYT1 dystonia (DOD, CDMRP) , directed by Dr. Fumiaki Yokoi

◦ Opioid receptor knockout mouse models to study restless legs syndrome (Mundipharma, Inc)

◦ C9ORF72 and its interaction with other proteins, implications in dystonia, ALS, and FTD

Potential resident projects◦ Dystonia benchwork research, analyzing DNA/RNA/proteins samples, brain

anatomy or behavior◦ Restless legs syndrome bench work research, similar as above. ◦ C9ORF72 research, similar as above.

Page 8: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Irene Malaty, MD

Parkinson disease◦ Quality Improvement Initiative – international database with potential for

many different types of research on motor and non-motor outcomes in PD. Data is available for mining!

Tourette syndrome◦ Comorbid conditions in adults with persistent tics

◦ Relationship of comorbidity severity and tic severity in kids

Botulinum toxin injection◦ Outcomes in safety and efficacy across indications

Neurology in our state◦ Can look at trends in trainee versus population growth

Page 9: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Nick McFarland, MD, PhD• Rab GTPase proteins – mediate toxic protein buildup, “seeding”

• Synuclein/tau models in cells, brain slice culture

• Preclinical models with AAV

Parkinson/neurodegenerative disease models

• Gait/balance analysis – PD vs Atypical Parkinson disorders

• Mood disorders: free water diffusion, MRI brain

• MRI biomarkers (Dr. Vaillancourt – U01)

PSP/Atypical Parkinsonism Clinical-Research Initiative

• UTI/infection, Gut microbiome in PD

• PD cognitive subtypes, dementia (Dr. Price)

• Neuroimmune markers, LRRK2/GBA in PD (Dr. Malu Tansey - Emory)PD/APD Biomarkers

• Motor phenotype and neuropsychiatric symptoms (Enroll-HD)

• RAN proteins in HD (Dr. Ranum)Huntington disease

Page 10: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Karen McFarland, PhDCurrent Projects

Effects of Tau or alpha-Synuclein (separate projects, same approach) overexpression on translation and ribosome function

◦ AAV based expression in slice cultures from mouse brains

◦ Cell-type specific expression (can compare effects in neurons vs astrocytes vs glia)

Effects of Abeta seeding in vivo (mouse APP brains) and in vitro (cell culture)◦ Strain effects from diffuse vs core plaques?

◦ Transcriptomics read-out & bioinformatics

1Florida ADRC and Neuromedicine/CTRND brain bank◦ Coordinate sample procurement and distribution

◦ >130 brains: AD, PD, PSP, MSA and more…

◦ Remember! Great resource available to the neuro community

Page 11: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Michael Okun, MD

Closed Loop DBS

Novel Stim Patterns

Mobile Computing Platforms

Page 12: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Adolfo Ramirez-Zamora, MD

Potential collaborative Resident Projects

1. Participating in ongoing prospective studies; tremor and PD DBS

2. Parkinson outcomes projects (PF) database studies (Excellent opportunity!)◦ Projects using this large database with 12,000 patients

◦ Use of medications, gait, etc. Main outcome is PDQ-39, quality of life

3. Fixel, INFORM database retrospective studies◦ Literature Reviews, case reports, participating in ongoing projects with

fellows

Center for Movement Disorders and Neurorestoration

Page 13: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

GOAL: To discover therapeutic targets that block Abeta42 and Tau pathology in a fly model of AD

Opportunities to learn: genetics, molecular and cellular biology, transcriptomics,

histology and optogenetic technologies.

Flies display:Aβ42 aggregatesPhospho TauNeuronal deathMemory decline

Aβ42TauAβ42Tau

Diego Rincon-Limas, PhD - Neurology Fly Lab: “Modeling Alzheimer’s disease in Drosophila”

Page 14: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Dystonia Tremor

Aparna Wagle Shukla, MDPhysiology of essential tremor in comparison to PD tremor

• Imaging networks for dystonic tremor• Physiological characterization • Effects of VIM DBS

Physiology and gait in orthostatic tremor

Physiology of Blepharospasm,Cervical dystonia lingual dystonia

Exercise and

dystonia

rTMS and dystonia

DBS for PD tremor

DBS for MS tremor, DBS for rubral tremorDBS and dystonia

Page 15: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Research Blitz!MS and General neurology

Page 16: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Tirisham Gyang M.DContact: [email protected]

Patient reported outcomes (PRO) database• Multiple PROs collected with potential to explore multiple projects

• Fatigue in patients treated with Ocrevus

• Effects of exercise on fatigue

DMT safety database• Safety monitoring in patients with MS on highly effective therapies

• Multiple potential research projects

Dance in MS• Impact of a structured dance routine on MS outcomes

• MRI, objective motor and patient reported outcomes

Page 17: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Tirisham Gyang M.D + Aaron Carlson, MDContact: [email protected]: [email protected]

Socio-economic status and disability in MS • Cross sectional study

• Correlation between SE at the time of diagnosis and disability

Clinical trials • TREAT-MS (Gyang)

• ASCLEPIOS (Carlson)

Case reports/series• Available for mentorship

Page 18: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Dr. Aaron Carlson, MD Contact: [email protected]

OneFlorida Projects:

• Prevalence of MS in a large population database

• Prevalence of NMO in the same database

• Goal: Understand who and where MS and NMO patients are in Florida, and how they are treated.

• May need assistance in chart review for NMO study

Multiple Sclerosis QI:

• Reviewing barriers to starting disease-modifying therapy

Review Articles / Case Reports:

• Available to mentor review articles /cases on neuroimmunologicalsubjects

Page 19: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery
Page 20: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Behavioral and Cognitive Division

Page 21: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

“Modeling Alzheimer’s disease in Drosophila”Diego Rincon-Limas, PhD. - Neurology Fly Lab

Aβ42TauAβ42Tau

GOAL: To discover therapeutic targets that block Abeta42 and Tau pathology in a fly model of AD

Opportunities to learn: genetics, molecular and cellular biology, transcriptomics,

histology and optogenetic technologies.

Flies display:Aβ42 aggregatesPhospho TauNeuronal deathMemory decline

Page 22: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Neal Weisbrod

• “Responses to a Standardized Approach to Advance Care Planning in Cognitive Disorders Clinic”

• Enrolling new patients and performing ACP discussion at 3 month followup

• Pre and post 3 month follow up surveys to evaluate depression, anxiety, hopelessness

• Comparing to another cognitive disorder clinic provider without routine ACP

• No active areas for resident involvement currently, but anticipate data analysis and write up in 2020-2021 academic year.

Page 23: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Dr. Heilman : Behavioral Neurology:

Possible Resident Research Projects

1. Stroke and Dementia: Development of standardized apraxia test. Patients with stroke and dementia often reveal ideomotor apraxia: However, currently there is no good tests for evaluating patients. The goal of this study would be test development.

2. Stroke and Inattention: Line Bisection: Immediate versus 20 second delay. Many patients with parietal lesions do not reveal neglect on line bisection and with a delay and habituation, they more be more likely to reveal a bias.

3. Limb-Kinetic Praxis : Coin rotation and aging. With aging there is a reduction of callosalconnectivity and thus with aging there may be a reduction in left hand performance.

4. Alzheimer’s Disease: Vertical neglect. The parietal lobes are important for the allocation of attention to lower space and with AD there is degeneration of the parietal lobes.

5. Stroke: Standardization of Florida Cognitive Assessment (FLACA)

6. Aging andAging and Hand (R vs L) Asymmetries Motor Working Memory (fist, edge, palm and more) Hand (R vs L) Asymmetries Motor Working Memory (fist, edge, palm and more)

Page 24: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery
Page 25: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

• TRACS Database Utilization to Develop Standardized Objective Measures to Identify Main Symptom Trajectory and Target Concussion Management

Vision: Build on TRACS Biomarker Papers to Better Understand Genome to Syndrome

This Could Be You!Trainee Research Award from AHS on Objective Exam Measurement of Posttraumatic Migraine

Interface of Sleep and Recovery and Prognosis-Actigraphy

Page 26: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Bhavana Patel, DO

• Racial disparities in LBD in Florida• Project using OneFlorida data trust

• Evaluate prescriptions and referrals for individuals from different backgrounds

• Prevalence of suicide in neurodegenerative dementias • Plan to use Medicare database

• Compare suicide deaths in LBD, AD, FTD, vascular dementia, CJD, and HD

• Laterality of motor symptoms in DLB and hallucinations• Study TBD, could be prospective or retrospective

Page 27: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Melissa J. Armstrong, MD, MSc

• Background in quantitative & qualitative research

• Research foci: Lewy body dementia, values affecting medical decisions (especially in older adults), shared decision making, patient-family-clinician communication, patient engagement, evidence-based guideline methodology

• Project opportunities for residents:• Analysis of patient & caregiver interviews about their clinical and research priorities in dementia

with Lewy bodies (interviews complete; transcripts need qualitative analysis)

• Frequency of DLB diagnosis after surgery (retrospective chart review, protocol in development)

• Documented response to response to AChEI use in LBD (retrospective chart review, protocol in development)

• Evaluating current practices for AVS use and patient instructions in the neurology clinic (protocol in development)

• Open to resident QI project ideas, especially those relating to improving communication

Page 28: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery
Page 29: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Case reports

Case series myotonic dystrophy type 1 and 2

Pain in channelopathies/periodic paralysis and muscular dystrophies

Axonal GBS UF experience

Page 30: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Prevalence of PMP22 gene deletions (indicative of HNPP) in patients less than 30 yowith multiple mononeuropathies discovered on NCS/EMG.

Prevalence of incidentally discovered polyneuropathy on NCS/EMG in patients with Inclusion Body Myositis.

An assessment of the utility and impact on management (or lack thereof) of electrodiagnostic studies in patients with various clinical presentations. When do they really make a difference?

Studies on Mary Jane?

Page 31: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

CAN YOU BREAK PATIENT CARE BARRIER IN THE FIELD OF HEADACHE MEDICINE?

Are neurology residents interested in headache? Are they ready for management

of headache disorders after graduation?

Aim: to assess if residents receive sufficient training in field of headache management, level of involvement and perceived quality

Methods: Self administered questionnaire distributed among neurology residents from different programs

Potential impact:

Identify shortcomings in headache education

Reduce stigma of headache medicine field

Publication and presentation at the professional meeting within reasonable time frame

Risk of stroke associated with estrogen containing oral contraceptives in women with migraine

Use of estrogen containing oral contraceptives is discouraged because of increased risk of stroke in women who have migraine with aura.

Absolute risk of stroke in women without migraine on oral contraceptives is 6.6/100.000, and it is increased to 14.5/100.000 in women with migraine with aura. This calculations are based on low quality of evidence.

Unknown:

The exact impact of combined oral contraceptives in stroke

Is there an dose effect of estrogens:

How estrogen containing contraceptives compare to non-estrogen contraceptives

Methods: retrospective observational cohort analysis of data from Florida One, i2b2 data warehouses

Page 32: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

WILLIAM J. TRIGGS, MD

Clinical Correlation of EMG in CIDP

Evaluation of serial neurophysiological studies in CIDP

Do electrophysiological measures of demyelination parallel clinical course?

Page 33: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Ataxia

Myotonic dystrophy

Page 34: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Case reports

Mill’s syndrome

Environmental toxins in ALS

Association of MS and CMT

Clembuterol in CMT

Natural History database

UF experience in SMA

ALS at the VA

Page 35: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Neurocritical Care Research

Team Joint venture – entire division involved in all projects: Babi, Busl, Maciel, Pizzi, Robinson

2 Research Coordinators III – Rebecca Wichman & Jessica Spana

35+ undergrad students

6 medical students

5 neurocritical care fellows

Expectations for resident role: learning about practicing study design, data collection, regulatory aspects of human research, analyses and interpretation of data, leadership role on data collection. You get to practice to be a PI if you are up for the challenge!

Page 36: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Neurocritical Care Saving the Survivors of Cardiac Arrest – Maciel

Improving neuroprognostication:

MOCHA and SPARE trials: prospective international multicenter observational trial (clinicaltrials.gov NCT03261089) aiming at developing a multimodal prognostic algorithm. SPARE is a substudy in Brazil where there is minimal WLST

Cost-effectiveness of delayed final neuroprognostic assessments: collaboration with the Economics department.

Enhancing knowledge re cardiac arrest survivors: retrospective database UF, BU, Yale & CCERMC – lots of clinically impactful scientific questions to be answered.

Novel therapies in post-anoxic status epilepticus: VIGAB-STAT, pilot trial of single load of Vigabatrin in the management of post-anoxic status as adjunct therapy. John Malta

Improving Neuroprognostication in Acute Brain Injury – Busl, Maciel

SPIN: Self-fulfilling Prophecy In Neuroprognostic studies. Several subprojects: cardiac arrest, ICH, SAH, status, TBI. Systematic review of neuroprognostic studies specifically investigating the quality of reporting of WLST, modes of death, timing of death and WLST, blinding of treatment team on tool being investigated. Amreen Farooqi

Page 37: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Neurocritical Care Central Retina Artery Occlusion – Maciel

Multicenter collaboration (Brown, Vanderbuilt, Penn, BU) gathering data on patients with CRAO that underwent systemic thrombolysis and/or endovascular treatment. Keith Kincaid

Pregabalin in acute symptomatic seizures – Maciel, Busl

Multicenter collaboration (Yale, UF) to demonstrate the performance of PGB as adjunct therapy in refractory acute symptomatic seizures. Zach Newcomer, Mitesh Patel. Epi division partnering

Acute pain management in SAH – Busl, Maciel

Database of SAH describing status quo: rates of narcotic use during index hospitalization and prescription of narcotics upon discharge, and effect of cortical spreading depolarization modulators in overall outcome of SAH. Vyas Viswanathan, Brandon Lucke-Wold

BLOCK-SAH: pilot project of anesthetic block to PPF evaluating safety and efficacy of local treatment in HA control and opioid requirements. Partnership with Anesthesia and Neurosurgery

ICH and outcomes – Robinson

Retrospective observational study investigating prognostic factors in ICH and the performance of ICH score in a modern cohort in the stroke belt

Page 38: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Moya-moya – Maciel

Interdisciplinary international survey of perioperative practices on moyamoya syndrome undergoing bypass sgy

Retrospective database at UF –50+ cases

Prospective database and possible QI project

Neuro-Urology – Busl

Urinary retention: who develops retention, and why? Brandon Lucke-Wold

Neurocritical Care Driven Organ Resuscitation in DBD to Improve Donation Yield – Busl, Maciel

Neurocritical care consultation leading the management of the potential brain dead donor. Great opportunity to learn critical care 1:1 with attending (DI management, hemodynamics, procedures) and compassionate bedside skills. Will assess time from BD to OR forharvesting, organ retrieval yield, allograph function

Nursing satisfaction: pre-/post- survey following launch

Evaluation of the Applicability of Alert Scores in the Neurocritical Care Unit – Busl

MEWS Score: How predictive of sepsis in the neurocritically ill population? Mike Morris

Alternatives: Rothman index. Can they perform better?

Neurocritical Care

Page 39: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Predictors of Positive Intracranial Flow on Nuclear Scan During Brain Death Determination –Robinson

Multicenter study of all nuclear brain studies characterizing predictors of non-confirmatory brain death testing to identify flaws in the brain death determination process.

Emergency Neurologic Life Support Education – Robinson

Instrument tool: What is the educational impact in knowledge during training?

NEW: train the trainer in Viet Nam 2020 (Da Nang 9/29-10/2)

Simulation: Can the learning experience be enhanced by educational tools?

ICU EEG Teaching – Maciel, Babi

ICU EEG library : spearhead development of international library for the CCERMC

UF-Emory ICU EEG online course: recording of lectures, and development of an online educational module

Neurologic Emergencies Simulation – Babi

In-vivo simulation in ICU with transdisciplinary team: roles, call outs for safety, and other QI metrics

Neurocritical Care

Page 40: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Biochemical characterization of blood brain barrier degradation of ischemic stroke patients –Pizzi

JAX ASCENT grant. Jacksonville campus.

Prospective study measuring MMPs, inflammatory cytokines, BBB degradation products (hyaluronic acid, syndecan). Opportunities for bench research!

Association of adropin with blood brain barrier degradation and permeability after traumatic brain injury – Pizzi

Prospective study measuring serum adropin, MMPs, BBB degradation products in human severe TBI patients and association with radiographic cerebral edema and elevated ICP. Opportunities for participating in study design, protocol development, IRB submission!

In vivo measurement of BBB degradation and permeability in rat model of TBI treated with adropin. Opportunities for bench research!

Neurocritical Care

Page 41: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Epilepsy Division

Page 42: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Kalamangalam/Epilepsy

Short term projects (3-6 months, resident driven)

• Medication withdrawal in EMU – questionnaire survey of US centers

• Seizures in the EMU – questionnaire/telephone survey + chart review

• Medication responsiveness in the epilepsies – retrospective chart review

• Handedness, language dominance and recovery from neurological deficit (joint project with neuropsychology)

• Creativity and relation to epilepsy (joint with Dr Cibula and Dr Ken Heilman)

• Miscellaneous case reports

Page 43: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Eisenschenk/Epilepsy - Sleep Medicine - Driving

1. Driving in Transient Ischemic Attacks (NIH R21)

2. Epilepsy Surgery Database

1. Database includes seizure type, localization, imaging, neuropsychological data, pathology and outcome

3. VA Epilepsy Centers of Excellence

1. Epidemiology of Epilepsy in Veteran Population

2. Recurrent TBI in Stroke and Epilepsy

3. Brain Sentinel

4. Motor Control Deficits during Driving Following Transient Ischemic Attack- NIH R21

5. Assessment of Driving and Performance Following Sleep Deprivation Associated with Consecutive Night Float

6. Role of Acute EEG and Imaging following stroke as predictors for post-stroke seizures (Smith/Hella/Eisenschenk)

7. Hippocampal Cell Density

1. Comparison of cell densities within CA1, CA2, CA3, CA4, and subiculum to seizure type, frequency, duration, imaging, neuropsychological testing, outcome

Page 44: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Cibula/Epilepsy

• “Risk Factors for Status Epilepticus in the setting of Sepsis” : Christine Smith study: we need assistance for chart review and data entry- would be great opportunity for PGY2

• EEG education : participation as subjects

Page 45: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Bruzzone/Epilepsy

• Short term projects:• Evolution of EEG patterns over time in patients with focal epilepsy

• Efficacy of drug combinations in status epilepticus

• Long term seizure outcomes in patients with ictal interictal continuum patterns on the ICU

• Long term projects• Epilepsy and metabolomics

• Lipid metabolomics in catamenial epilepsy

• Global metabolomics after first non provoked seizure

• Metabolomics and the brain-gut axis in patients with VNS

Page 46: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Hella/Epilepsy

• Seizures post-stroke: EEG and radiologic findings• Ongoing project with Dr.Eisenschenk/Khanna

• Pregabalin in the treatment of refractory status epilepticus• Ongoing project with Dr.Maciel

• Quality project : EEG services at UF Health with aim to improve seizure and status diagnosis and prompt treatment

Page 47: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Stroke

Page 48: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Strategic Planning, Timelines, & Goals

Informational Interviews to Explore Career Opportunities

Stroke Hot Topics Discussions

Mentorship teams

Curriculum Vitae Preparation

Creating an NIH Biosketch

Presentation Skills

Monthly team meetings

Team Science Course

Developing Scientific Questions

Guidance with manuscript and abstract preparation

Tips on scientific communication

Centralizing resources and IRB protocol for chart review studies

Bonus Opportunities: Blogging; Peer Review; Presentations; R25

CAREER DEVELOPMENT RESEARCH

Page 49: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Primary Prevention

•White matter disease•Sepsis EKG Afib and stroke project

Acute Ischemic Stroke Treatment

• Combined Blood and Imaging Biomarkers Project

• Stroke Systems of Care

Secondary Stroke Prevention

• CYP2C19 alleles Plavix and Stroke Prevention

• Pharmacogenomics

Transitions of Care

• Quality Improvement Survey

Alexis Simpkins, MD.PhD., MSCR

Assistant Professor of Neurology

Neurovascular Division

Page 50: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Nandakumar Nagaraja - Stroke

1. UF Stroke Retrospective review projects a) Role of microbleeds on hemorrhagic transformation with

and without t-PA. b) Outcomes of lacunar stroke in patients with and with

perfusion deficits on CTP.

2. Review articlea) FLAIR changes in acute stroke.

3. National Inpatient Sample Database projects

Page 51: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

Christina Wilson, MD PhD

• Stroke projects• Factors influencing patient delay in presentation

• Low NIHSS on presentation – database of 300 patients

• QI projects• MRI utilization in the ED

• Improving ED stroke alert accuracy

• Medical education projects• Self-guided neuro-ophthalmology curriculum

Page 52: Neurology Department Fourth Annual Research Blitz...1) Neurogenetics –from high-throughput genome sequencing to polygenic risk & precision medicine, in clinical service and discovery

-Resident QI project

Looking at delays in tPA administration after 7 pm vs morning and daytime hours

Investigator Initiated Preliminary Project

-Reviewing the CREST 2 Registry database of over 4000 patients to determine which patients enrolled have had a prior ipsilateral carotid occlusion and were later enrolled into the trial after spontaneous recanalization. Aim is to determine which patients recanalize and at what time frame and whether CAS is beneficial.

Hypothesis: Carotid Occlusion is not always benign and can be associated with future stroke recurrence. Patients with a known occlusion should have repeat imaging. The benefit of CAS in those with prior occlusion and subsequent recanalization is unknown.

Anna Khanna MD