87
Naturopathic Nutrition Year 1 Chemistry & Biochemistry I © CNM: Nutrition Year 1 Chemistry & Biochemistry I. BQ. 1 The study of the chemical compounds and reactions in living systems.

Naturopathic Nutrition Year 1 - thecnm.com

  • Upload
    others

  • View
    4

  • Download
    1

Embed Size (px)

Citation preview

Naturopathic Nutrition

Year 1

Chemistry & Biochemistry I

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.1

The study of the chemical compounds

and reactions in living systems.

Learning Outcomes

In today’s lecture you will learn:

• Key concepts in chemistry and

biochemistry, including water,

pH and buffers.

• Structure and functions

of carbohydrates.

• Structure and functions of lipids.

2© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Chemistry & Biochemistry

• Chemistry = the science that deals with the composition and properties of substances and various elementary forms of matter (gas, liquid, solid).

• Biochemistry = the science concerned with the chemical and physicochemical processes & substances that occur within living organisms.

• Matter is everything around us that has mass and occupies space.

– Atoms are small particles that make up matter - the “Lego bricks” that make up everything in our universe.

– Atoms are made up of electrons, protons & neutrons.3

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

bio = life

Chemical Elements

• An element is a substance made up of just one type of atom so it cannot be split up into simpler substances.

• As with Lego, there is a finite number of different types of atoms from which we can build things.

• The elements we know of are in the Periodic Table.

• In Chemistry each element is given a chemical symbol for its long name. For example:

- Hydrogen – H.

- Carbon – C.

- Calcium – Ca.

- Magnesium – Mg.4

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

H C Ca Mg

Elements in the Human Body

• 26 different elements are normally

present in the human body.

• 4 major elements - carbon, hydrogen,

oxygen and nitrogen, which account for

96% of the human body.

• It is useful to know some element

abbreviations, for example, in clinic

notes (i.e. “Fe deficiency”) and because

it is common in medical texts.

5© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Fe = Iron

6

Periodic Table

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

This is an image of the Periodic Table.

Those elements highlighted in the redboxes are of relevance to nutritional practice.

Subatomic Particles

• Every element is made up of atoms. Each atom is made up of subatomic particles called protons, neutrons and electrons.

• Protons and neutrons together form the nucleus of an atom.

• Protons have a positive charge and a mass of approximately 1 atomic unit.

• Neutrons have no charge and a mass of approximately 1 atomic unit.

• Electrons are negatively charged particles that ‘buzz’ around the outside of the nucleus, creating an electron cloud. They have virtually no mass at all.

7© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

sub = under

atomic = atom

electron = electric

neutron = neutral

Electrons

8© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• An element will have an equal number of electrons and protons giving an overall neutral charge to the atom. Recall that electrons carry a negative charge.

• Electrons move in groups around the nucleus, known as ‘electron shells’.

• Within their shells electrons ‘pair-up’.

• An atom becomes reactive if its outer shell isn't full or if it loses an electron.

• This happens in ‘free radicals’, where an electron become unpaired.

Atoms Analogy

• “Atoms are like families”:

• Each proton is an adult with one child (an electron).

• Each neutron is an adult with no children.

• The adults hang out together in the centre (nucleus) - each weigh 1.

• The children (electrons) buzz around the adults like an excited cloud and weigh (virtually) nothing.

• Each parent (proton) has a positive charge and each child (electron) has a negative charge.

• The opposite charges attract each other, keeping the family together!

• All the chemical properties of an atom are down to its number of protons and electrons. The neutrons just add weight to the atom; they don’t significantly change how it chemically reacts.

9© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• The Periodic Table is a list of all of the currently known elements, arranged in columns and rows that show us which elements share similar reactivity and physical properties.

• The number that is assigned to each element tells us how many protons and, therefore, how many electrons each atom has.

• The larger number is always the mass number (the weight in atomic units). It tells us how much the atom weighs so it can be used to work out the number of neutrons (remembering that electrons weigh nothing).

10© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Atomic Number

Symbol

Atomic Weight / Mass

Name

The Periodic Table

11© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• Each column

contains elements

that react in a

similar way.

• All of the elements

in column one react

with water. The

lower down the

column indicates a

more vigorous

reaction.

The Periodic Table

12© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• A specific column of elements in the Periodic Table are collectively known as the ‘Halogens’.

• Like with any column in the Periodic Table, the Halogens share very similar chemical and physical properties.

• In nutrition, this is highly relevant when considering the role of iodine in thyroid health. Recall that iodine is required for the synthesis of thyroid hormones (T3 & T4).

- If present in the body, the other halogens (e.g. fluoride & chloride) can enter the thyroid, preventing the formation of T3 & T4 (inducing hypothyroidism).

- Fluoride is in toothpaste, tap water and mouthwashes, whilst chlorine is in swimming pools and chlorinated washed vegetables.

The Periodic Table: Halogens

Counting Subatomic Particles

Atomic number = number of protons.

Mass number = number of protons + number of neutrons.

Number of neutrons = Mass number (always bigger) – atomic number.

13© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Potassium:

Protons - 19

Neutrons - 20

Electrons - 19

Count the subatomic particles in

these two elements:

Note that the mass number is an average mass and hence contains decimals

Isotopes

• Isotopes = atoms of the same element which have a differentnumbers of neutrons in the nucleus.

• In nature there are often different versions of the same atom called isotopes.

• This does not affect the chemical activity of the atom as neutrons have no charge, but it does change the mass.

14© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Iso = equal

-topos = place

Isotopes & Radiation

• Some (but not all) isotopes

have such an imbalance of

protons (parents) and

neutrons in their nucleus

that it causes the atom

(family) to become unstable.

• This is the cause of

radioactivity. The unstable

atom needs to get rid of

energy to become stable.

15© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

A ‘PET scan’ is an

imaging technique used

in allopathic medicine.

Radioactive isotopes

are introduced (often

injected) into the body.

Isotopes in Medicine

• Some diagnostic techniques in medicine use radioactive tracers which emit gamma rays from within the body.

• Radiotherapy uses the gamma rays from radioactive isotopes to target rapidly dividing cells. However, this is also highly damaging to healthy tissues.

• The breath test for H. pylori uses urea labelled with either radioactive carbon-14 or non-radioactive carbon-13. In the subsequent 10–30 minutes, the detection of isotope-labelled carbon dioxide in exhaled breath indicates that the urea was split; this indicates that urease (the enzyme that H. pylori uses to metabolise urea) is present in the stomach, and hence that H. pylori bacteria are present.

16© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Electron Shells

• Electrons like to “hang out” in certain

numbers (2, 8, 8, 8) so the optimum number

of electrons in a shell is a known number.

• This means that the first electron shell has 2

electrons, whilst the second has 8 and so on.

• Electrons always want to be in pairs.

• All of the reactions that happen in Chemistry are

driven by atoms trying to end up with a stable

and full outer shell either by stealing, giving away

(donating) or sharing electrons.17

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Hydrogen - The Simplest Atom of All

• Hydrogen contains: One proton, One electron. No neutrons.

• We often refer to Hydrogen, when it is in its H+ form(hydrogen minus the electron’), as being a ‘proton’. This is why we talk about acidity in terms of protons.

• Because hydrogen has only one electron in its outer shell, it will often go looking for another atom that needs one electron to fill its shell. This means that hydrogen easily reacts with other atoms.

• Some elements do not easily react as they have their outer shell filled with the perfect number, so they are rarely involved in chemical reactions. We call these elements ‘inert’.

18© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Bonding

• Atoms that are trying to become stable by

bonding with other atoms so that they can get just

the right number of electrons in their outer shell.

• The two main types of bonding are:

1. Ionic bonding – atoms transfer electrons

(1 donates, 1 receives).

2. Covalent bonding – occurs

when atoms share electrons.

19© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Ionic Bonding

• Ionic bonds occur when one atom donates some of its electrons to another.

• This usually only occurs when there are 1, 2 or occasionally three electrons to donate.

• Moving any more electrons than this isn’t energetically favourable.

• Consider the regular appearance of table salt (NaCl) and Sea/Himalayan salt (which contain various other minerals, too).

20© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Ions

• If an atom gives up or gains electrons to fill its outer shell, it becomes an ion.

• Ionisation is the process of giving or gaining electrons.

• Ions are written with their corresponding – or + charge.

For example:

• Ca²+ has donated two electrons to another element and now has a positive charge.

• Cl¯ has gained an electron so has taken on a negative charge.

• In both cases the Calcium and Chlorine have ended up with a full outer shell.

21© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Sodium Ion

22

• Sodium has one electron in

its outer shell.

• Energetically its far easier to

give that one electron away

than to gain or share 7.

• So sodium always gives its one

electron away to become Na+.

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Covalent Bonds

• Covalent bonds occur when two elements

share electrons so that they both have the

“magic number” they are looking for.

• This kind of bonding tends to happen when the

two atoms are similar or when there are a lot

of spaces to be filled to reach a full outer shell.

23© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Polar Bonds

• Polar covalent bonds form where electrons are shared unequally.This happens because some atoms have a lot of ‘electron pulling power’.

• Some elements have lots of protons compared to the number of electron shells i.e. a strong positive centre. These elements are referred to as ‘electronegative’ because they tend to pull the shared electrons towards themselves.

• These very electronegative atoms are able to pull the electrons in a bond towards them, leading to an uneven distribution of charge.

24© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Non-polar covalent bond:

Polar covalent bond:

F, Cl, O and N

are the most

electronegative

elements

Hydrogen Bonding

• One of the most important examples of a polar bond are the bonds between Oxygen and Hydrogen in water.

• The oxygen pulls the electrons towards itself, resulting in a negatively charged area over the oxygen and a positively charged area over each hydrogen.

• The positive hydrogens on one water molecule are attracted to the negatively charged oxygens on the next molecule.

• These loving interactions are called hydrogen bonds and are what give water many of its special properties such as surface tension and the ability to dissolve so many different things.

25© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Water - The Universal Solvent

26© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• Water serves as the medium for most chemical reactions in the body.

• As water contains polar bonds, it is an ideal solvent for dissolving chemicals into their separate ions. In addition, the different electrical charges in water can allow water molecules to become attracted to other molecules (hence water dissolves salt).

• Hydrophilic molecules are molecules which have polar bonds. They dissolve easily in water (e.g. alcohol).

• Hydrophobic molecules contain non-polar covalent bonds, so they do not dissociate easily in water (e.g. fats).

hydro = water

-philic = loving

-phobic = hating

Summary Quiz

1. Explain what is meant by an ‘ion’?

2. Give the chemical symbol for Potassium.

3. Name the THREE subatomic particles and give their weight and charge.

4. Explain what is meant by an ‘isotope’. Give ONE example.

5. Describe the association between Iodine and Fluorine.

6. How many electrons are required to fill the second electron shell?

7. Describe what happens in ionic bonding.

8. Name the FOUR most electronegative elements.

9. Give an example of a polar molecule.

10.Explain what is meant by the ‘universal solvent’.27

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Electrolytes

• An electrolyte is formed when an ionic

compound (e.g. salt) dissolves in water.

• Electrolytes can conduct electricity.

• The key electrolytes in the body include

Sodium, Potassium, Chloride, Calcium,

Magnesium, Phosphate, Bicarbonate.

• Electrolytes are important body constituents because:

- Conduction of electricity is essential for nerve & muscle function.

- They exert osmotic pressure important for water balance.

- Some play an important role in acid-base balance.28

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

electro = electric lyte = from “Lutos” meaning released

Acids and Bases

• An acid is a substance that releases a high amount of H+

ions when dissolved in water.

• A base is a substance which binds to hydrogen ions in solution. This creates lots of OH-.

• Water is a neutral solution because for every H+ released an OH- is also created. Although, if you steal H+ from a water molecule (H2O), you are left with lots of OH-

• The pH scale was developed using water as a standard.The pH of water is 7. Anything with a pH lower than 7 is an acid and anything higher than 7 is considered a base (alkali).

29© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

pH = “potential

of hydrogen”

• The blood closely monitors and maintains an optimal pH of 7.35-7.45 for chemical reactions to occur, whilst the stomach has an optimal pH of 2-3.

• In a healthy digestive system, the following is the case:

• Fruit and vegetables contain organic acids and hence may have a low pH when measured as foods before consumption. Yet these organic acids can be metabolised by the body and intestinal bacteria to become alkaline. These foods are also high in alkaline minerals, e.g. potassium, magnesium and calcium which contribute to their net alkaline effect.

30© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Acids and Bases

31© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Acids and Bases

• Before consumption, dairy is not very acidic and is also high in calcium, an alkaline mineral. Yet dairy is considered more "acidic" because of the higher protein/sulphur amino acid content. The sulphur amino acids increase sulphuric acid formation, which then disrupts blood pH drawing more calcium from bones and increasing calcium loss in urine.

• For this reason, meat, also high in sulphur amino acids, will have a net acid effect regardless of whether or not it is organic, since amino acid ratios are identical in both.

• Other acidic foods are those rich in refined sugars and processed foods. It is also worth noting that stress and being sedentary also create an acidic environment.

Testing pH in the Body

• Cancer thrives in an acidic environment. It is thought that a tissue pH of 8 or above would start to kill cancer cells.

• It is vital to consider tissue acidity when considering the ‘terrain’ of the body, i.e. what is the environment?

• Given the significant link between body acidity and the effect this has on optimising the environment for various diseases such as cancer, it is vital practitioners are able to measure pH.

• Ideally we would measure “tissue pH“ directly, although this is very difficult. The blood will always work hard to maintain its own pH (through breathing, the kidneys and buffer systems) between 7.35-7.45. Therefore, urine and saliva are the good “outputs” of the body to assess.

32© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

33© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• Using a strip of pH (litmus) paper: - Urine: Urinate onto a strip on your second

urine output in the morning (about an hour after your first urine output upon waking). Measure the pH midstream.

- Saliva: Wash your mouth upon waking with plain water. Wait for about ten minutes and then spit onto the pH paper.

• Remember this gives you information about the terrain / environment. You are aiming for a slightly alkaline or neutral pH. Many cancer patients do in fact have pH results of 4.5-6. pH is a close reflection of what an individual has eaten.

Testing pH in the Body

Do this at

home..

Chemical Reactions

• Chemical reactions occur when new bonds are formed or old bonds are broken between different molecules.

• Every reaction involves the transfer of energy to either potential (stored) energy, kinetic energy or heat.

• The starting materials are known as the reactants and the end molecules are known as the products.

• Reactions are written in formula and they must always balance in electrons from one side to the other.

34

A + B = AB

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• For a chemical reaction to occur, there needs to be the opportunity for two molecules to collide (‘collision theory’).

• The higher the energy of the molecules, the faster they move and the greater chance they have of reacting.

• The minimum energy that is required for a reaction is known as the energy of activation.

• Chemical reactions are reliant on the correct temperature and enough reactants.

• Changes in pressure can also change the speed of reactions, with increasing pressure forcing molecules closer together.

35© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Chemical Reactions

Catalyst & Inhibitors

• A catalyst speeds up reactions by lowering the activation energy required.

• This means the reaction is faster or can occur at a lower temperature.

• Catalysts that the body produces are called ‘enzymes’. For example, consider the enzyme ‘HMG-CoA reductase’ in the production of cholesterol and CoQ10.

• Inhibitors act antagonistically to catalysts. They stop the catalyst from being so effective by making the activation energy higher and hence slow down the reaction time. Many drugs are inhibitors e.g. ‘Statins’ are HMG-CoA reductase inhibitors. 36

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Types of Chemical Reactions

• Anabolic reactions are synthesis (building) reactions.

– This occurs when the body is making new substances and building new bonds.

– For example, taking amino acids and building a protein. This requires energy.

– A + B A-B

• Catabolism describes reactions where “breaking down” occurs.

– For example, when breaking down food, releasing energy from them. We trap that energy as ‘ATP’.

– A-B = A + B37

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

ana = “up”cata = “down”-bolic = “to throw”

• When water is the medium that breaks down the molecule in to smaller pieces, it is known as a hydrolysis reaction.

• When water is formed as the waste product of a reaction, it is known as a dehydration synthesis; this is normally when larger molecules are being made. E.g. when making carbohydrates.

38© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Chemical Reactionshydro = water

lysis = split

Reversible Reactions

• Reversible reactions describe chemical reactions whereby the products of the reaction can react together to produce the original reactants (meaning it can go back the other way).

A + B = AB / AB = A + B

Represented By:

A + B AB

• These kinds of reactions establish an equilibrium where there is always some starting materials and some product present.

• Controlling the direction of reversible reactions is very important in the body. This is done using enzymes and having mechanisms in place that allow us to remove starting materials and products.

39© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Buffer Systems

• Buffers are substances that maintain the H+ concentration in the body within normal limits. They can bind to H+ ions and OH- to ensure the blood pH remains between 7.35-7.45.

• The most important buffer system in the blood stream is the bicarbonate (HCO3-) buffer system, which “mops up” excess acidity.

• Catalysed by carbonic anhydrase, carbon dioxide from cellular respiration reacts with water in the blood to form carbonic acid, which rapidly dissociates to form a bicarbonate & hydrogen ion.

• These reactions are reversible - at any given time there’s a balance of carbon dioxide, water, carbonic acid, H+ & HCO3- in the blood.

40© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• When extra hydrogen ions accumulate in the blood, for example, after strenuous exercise (↑lactic acid), the reaction is able to adjust to “mop up” the extra H+ ions, making more carbon dioxide and water.

• This is then accounted for by increasing breathing rate and hence the exhalation of carbon dioxide through the lungs.

• The kidneys also play a key role in the buffer system, as they can produce the HCO3-buffer. They can also excrete excess H+ ions.

• The kidneys are fairly slow in this system and their production of HCO3- is fairly strenuous upon the organ. Therefore, it is important to avoid an acidic diet, so as to reduce the stress placed on this system.

41© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Buffer Systems

Oxidation and Reduction Reactions

• The removal of electrons from an atom or molecule is called ‘oxidation’.

– Oxidation reduces the potential energy in a compound. Generally most oxidation occurs by removing electrons with the help of hydrogen.

– Because hydrogen is lost, this is often called a dehydration reaction.

• When something is ‘reduced’, it gainselectrons, resulting in the increase of energy in that molecule.

– A gain of hydrogen is normally indicative of something being reduced.

42© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Free Radicals

• Free radicals are molecules or compounds that have an unpaired electron in their outer shell.

• Free radicals want to stabilise their outer shell, so they try and ‘steal’ electrons from other stable molecules. By doing so, they become destructive, causing ‘oxidation’.

• This leaves the attacked molecule with an unpaired electron, so a chain reaction of oxidative damage occurs. Free radicals can even take electrons from DNA, which can damage genes and can ultimately result in cancerous changes.

43© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Oxidative Damage

• Free radicals can cause ‘oxidative damage’ to tissues in the body. Oxidative damage is linked to cancer, atherosclerosis (endothelial damage), fibromyalgia and neurodegenerative diseases.

• Free radicals develop from processes within our bodies such as aerobic respiration, metabolism & inflammation.

• They can also come from the environment, e.g. pollution, sunlight, strenuous exercise, X-rays, smoking, alcohol.

• In a healthy body there are mechanisms in place to “mop up” excess free radicals, but if exposure is high these can become overwhelmed.

• We need to reduce the exposure of our clients to excess sources of free radicals, whilst also optimising their antioxidant status in an effort to protect them from free radical damage.

44© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Antioxidants

• Antioxidants work by donating an electron to the free radicals to convert them to harmless molecules, without being damaged themselves.

• Antioxidants consist of a group of vitamins, phytochemicals and enzymes that work to neutralise free radicals before they harm our bodies.

• The key to a good antioxidant is that it must be stable once it has given away its electron.

45© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

46© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Antioxidants

Beta-CaroteneVitamin C

Vitamin E

Quercetin

Glutathione

Peroxidase

Antioxidant Recycling

• Antioxidants (AO) work best as a collection, where they can recycle each other. They do not work in isolation.

• Why might taking large doses of a single antioxidant be a bad idea?

• What advantages does foodhave over supplements when it comes to antioxidants?

47© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Biochemical Molecules

• Living things are characterised by molecules made from carbon.

– Any other groups of atoms that are attached to the carbon skeleton are known as ‘functional groups’.

– Functional groups contribute to the structure and function of that molecule.

• Biochemical molecules are important when consider the living nature of Biochemistry. Ultimately, cells require energy to function, which comes from breaking chemical bonds from what we have absorbed from our foods.

48© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Amino Acid Structure:

Functional Groups

Hydroxyl group

• Alcohols – they are polar

and hydrophilic.

• Dissolve easily in water.

Sulfhydryl group

• Common in some protein chains. Found in the sulphur-containing amino acid cysteine.

• Polar and hydrophilic. 49

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Note: The ‘R’ group is an abbreviation for the unreactive part of

the molecule that is just made up of carbon and hydrogen bonds.

hydro- = hydrogen-oxy = oxygensulf- = sulphur

50

Carboxyl group

• Found in amino acids.

• They are hydrophilic and can interact as a weak acid or as negative particle.

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Functional Groups

Amine Group

• Found in amino acids.

• The -NH2 group can act as a weak base if necessary (mopping up H+).

carbo- = carbon-oxy = oxygenamine = amino (acid)

51

Esters

• Predominate bond in triglycerides.

Phosphates

• Found in ATP.

• Phosphate groups are very hydrophilic (dissolve easily in water), as they can form a double negative charge.

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Functional Groupsester = meaning “vinegar”

Summary Quiz

1. Give TWO functions of electrolytes in the human body.

2. Explain the role of ‘buffer systems’. Name the main one.

3. What could create ‘acidity’ in the body?

4. What is a free radical? Explain how antioxidants work.

5. What is meant by a ‘biological catalyst’?

6. When water is the medium that breaks down the molecule, it is known as what type of reaction?

7. What do the terms ‘oxidation’ and ‘reduction’ mean?

8. Name TWO functional groups found in all amino acids.

9. What biological molecule would you find an ester bond in?

10.Give a definition of ‘Biochemistry’.52

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Carbohydrates

53© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

carbo / hydrate = meaning the carbon is “hydrated”

• Carbohydrates include starches (bread, pasta etc.), cellulose (plants) and sugars.

• All carbohydrates are made of C-H-O.

• The carbon atoms are normally arranged in a ring with oxygen and hydrogen atoms attached.

• Carbohydrates have many -OH groupsso they can form hydrogen bonds. This means the smaller carbohydrates such as simple sugars can dissolve easily in water.

• Carbohydrates are grouped into 3 classes, depending on their size: monosaccharides, disaccharides & polysaccharides.

Major Carbohydrate Groups

Monosaccharides:

• 3-7 C atoms.Glucose

Fructose

Galactose

Deoxyribose

Ribose

Disaccharides:

• 2 monosaccharides joined together by dehydration reaction.

Sucrose = glucose + fructose

Lactose = glucose + galactose

Maltose = glucose + glucose

Polysaccharides:

• 10s-100s of monosaccharides joined together by dehydration reaction.

Glycogen - Glucose chain

Starch – Glucose chain

Cellulose – Glucose chain

54© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Glucose = from “glukus” meaning sweet

Fructose = from “fructus” meaning fruit

Lactose = from “lac” meaning milk

Monosaccharides

• Monosaccharides are simple sugars that can exist as single molecules, e.g. glucose and fructose.

• Most monosaccharides have a sweet taste – fructose is the sweetest.

• Monosaccharides are grouped into families named after the number of carbon atoms.

• The names of monosaccharides all end in –ose.

– Triose (3 carbons).

– Pentose (5 carbons).

– Hexoses (6 carbons) e.g. glucose & fructose.

– Heptose (7 carbons).55

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

mono = one

saccharide = sugar

Isomers

• Isomers have the same chemical formula but different structures.

• Analogy: Each atom is a Lego brick. The same number of Lego bricks can be used to create different structures, e.g. a house or a car.

• E.g. C6H12O6 is the formula for fructose, glucose, galactose and mannose.

• Honey is an example of something that contains a combination of these isomers i.e. it is formed from a combination of fructose and glucose (almost 1:1).

56© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Iso = equal / same

Disaccharides

• Two monosaccharides can join together in a dehydration synthesis to from a disaccharide.

– This dehydration reaction occurs by ‘removing water’ to create a ‘glycosidic bond’.

• If we were to ingest a disaccharide, we can break it apart by putting water back into the bond – this is known as ‘hydrolysis’.

• Lactose constitutes 5% of cow’s milk and 7% of human milk.

• Maltose is formed during the hydrolysis of starch.

• Sucrose is table sugar (glucose and fructose).57

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

di- = two

saccharide = sugar

Glycosidic bond

Sucrose = from “sucre” meaning sugar

Polysaccharides

• Polysaccharides contain 10s-100s of monosaccharides in glycosidic bonds.

• Typically long chains of glucose molecules joined together e.g. starch, glycogen & cellulose.

• They are normally insoluble in water (because they have given up many –OH groups) and hence starch (e.g. pasta) doesn’t just dissolve in water.

• Polysaccharides do not taste sweet.

• Their digestion begins in the oral cavity.

• The most common type in the body is glycogen.58

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

poly = many

saccharide = sugar

cellulose = from “cellule” meaning small cellglyco- = sweet-gen = to become

Starch: Amylose & Amylopectin

• Starch is the major dietary source of carbohydrate.

• Starch is found in foods such as bread, rice and pasta. Its digestion begins in the oral cavity.

• Starch is made up of two different polysaccharide components.

– 20-25% Amylose

– 75-80% Amylopectin

• Amylose is a single chain of glucose units.

• Amylopectin is also made from glucose chains, but it has a branch-like structure.

59© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

From “Amylum” meaning starch-ose = sugar-pectin = meaning “make solid”

• Amylopectin is highly branched, leaving more surface area available for digestion. It’s broken down quickly, which means it produces a higher rise in blood sugar (glucose) and subsequently, a higher rise in insulin.

• Amylose is a straight chain, which limits the amount of surface area exposed for digestion. Foods high in amylose are sometimes referred to as sources of resistant starch as they are digested more slowly.

• Due to its slower digestion, some resistant starch ends up in the large intestine where it can act as a food source for the bacteria there.

60© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Starch: Amylose & AmylopectinAmylose

Amylopectin

Glycogen

• Glycogen is a polysaccharide of glucose which functions as the primary short-term energy storage.

• Each glycogen molecule is made up of about 60,000 glucose molecules and has even more branches that amylopectin.

• It is made and stored primarily by the liver and the muscles.

• Glycogen in the liver can be used to help maintain blood sugar levels.

• Whereas the glycogen in the muscles can only be used by that particular muscle.

61© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Cellulose

• Cellulose is the structural material of plants –found in plant cell walls.

• It is also a glucose polymer but the units are linked in a different way using different bonds, giving a flat ribbon-like strand, with an overall rigid structure.

• Humans lack the correct enzymes to break the ‘unique’ bonds between glucose molecules in cellulose, so we cannot digest it.

• Instead, cellulose acts as fibre which assists with the movement of materials through the intestines.

• Cellulose is the single most abundant organic compound on earth.

62© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Functions of Carbohydrates

• Energy – carbohydrates are a primary fuel for energy production and also provide a limited storage form of energy, glycogen (i.e. fasting).

• Fibre (cellulose):– Needed for proper bowel function.– Protects against cardiovascular disease (14g per 1000kcal).– Protects against diabetes (15g per day).– Increase satiety (14-24g per day) & aids weight loss (14g per day).– Protects against colorectal cancer.

• Glucose can be used for a number of processes, including ATP production, Glycogen synthesis, Triglyceride synthesis (if excess in quantity) & Amino acid synthesis.

Slavin, J. (2013). Fiber and prebiotics: mechanisms and health benefits. Nutrients. 5 (4) pp.1417-35.

63© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Carbohydrate Digestion

• Salivary amylase starts working on the end of the long glucose chains in starches (hence if you chew starch for a long period, you will start to taste sweetness).

• Salivary amylase works well at a fairly neutral pH, but is deactivated by stomach acid.

• In the small intestine, the pancreas releases pancreatic amylase which continues carbohydrate digestion, but this time into disaccharide units.

• The last stage of carbohydrate digestion involves brush border enzymes in the small intestine (lactase, maltase and sucrase).Remember that in pathologies such as coeliac disease, the brush border can be damaged leading to poor carbohydrate digestion.

64© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Exercise

• Design a one-day menu that will provide

30g of fibre (work on one meal each).

• The current recommendations suggest a

fibre intake of 30g per day for optimum

health. Most people’s diets contain much

less that this.

• You can use online resources and online

grocery shopping sites to work out fibre

content.

65© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Lipids

• Lipids contain the elements

Carbon, Hydrogen and Oxygen,

just like carbohydrates, but in

a different ratio.

• Lipids have fewer polar -OH

groups, so they are hydrophobic.

• To move around the body, they are

often bonded to a protein to make them

more soluble (proteins act like “taxis”).

They are then called ‘lipoproteins’.

66© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Triglycerides

• Triglycerides are the main form of dietary fat.

• Contain a single glycerol molecule and three fatty acid chains (these can be saturated or unsaturated – this combination will determine whether its solid or liquid at room temperature).

• Fatty acids are attached to glycerol by a dehydration synthesis reaction and the bond formed is known as an ‘ester’ (different from the glycosidic bond seen in carbohydrates).

• They are broken down by a hydrolysis reaction (like with carbohydrates).

67© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Ester Bond

tri = three (fatty acids)

glyceride = glycerol

Functions of Triglycerides

• Fats provide a source of energy, but the process of energy released from fats is less efficient than when carbohydrates are used.

• Fats provide a convenient form in which to store excess calorific intake (extra glucose is also turned into triglycerides).

• Insulation.

• Protection of body parts and organs (e.g. kidneys).

68© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Saturated Fats

• Saturated fats contain single covalent bonds between each of the fatty acid carbon atoms.

• Each carbon atom is saturated with hydrogen atoms.

• Saturated fatty acids are very straight, meaning they can line up close to each other and hence are more likely to be solid. Saturated fats are generally solid at room temperature

• E.g. coconut oil.69

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

saturated = full

Monounsaturated Fats

• Monounsaturated fats contain fatty acids with one double covalent bond between two carbons.

• The double bond forces the molecule into a bent configuration.

• Monounsaturated fats are generally liquids at room temperature because the molecules can’t pack very closely together.

• E.g. olive oil.70

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

mono = one (meaning one double bond)

Polyunsaturated Fats

• Polyunsaturated fats contain

more than one double bond

in the carbon chain.

• These molecules are ‘kinked’

so they, too, are liquids at

room temperature.

• E.g. Sunflower oil, rapeseed

oils, vegetable oils.

71© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Rapeseed

oil

Note the multiple ‘kinks’

Naming Fatty Acids

• Fatty acids are named according to the closest double bond to the end of the chain.

• The end of the chain is always the end without the oxygens.

– Omega-3 - the double bond is three carbons up from the end.

– Omega-6 - the double bond is 6 carbons up from the end.

• Omega 3 and 6 are essential in our diet.

72© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

1

2

3

4

5

6Double

bond

Omega-3 Fatty Acid:

Omega-6

Fatty Acid:

Cis- and Trans- Configurations

• The presence of a double bond means that two different molecular configurations are possible.

– A cis configuration is when the H atoms are on the same side of the double bond.

– A trans configuration is when the H atoms are on separate sides the double bond.

• In nature, nearly all fats have a cis- structure. Our body recognises these and can use them.

• When we try to create these fats in laboratories/industry, they position the H atoms on opposite sides where they have more space.

• Consider eating sunflower seeds (i.e. from nature) v. eating something cooked in sunflower oil.

73© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Cis- and Trans-

• A cis- fatty acid is bent, whereas a trans- fatty acid is more linear.

• Cis- and trans- fats have different properties, especially when incorporated into biological structures such as cell membranes. Cis- fats make cell membranes more flexible. Trans-fats “stiffen” cell membranes and are prone to oxidative damage and making cell membranes leaky.

• Cis- fats can be turned into trans- fats by heating to high temperatures or heating oil repeatedly (the hydrogen spins around).

• They are also formed during hydrogenation reactions used to make processed foods and margarine (trans-fat).

• Consider how an oil that keeps being heated becomes thicker as the fatty acids become more linear and hence more solid.

74© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Essential Fatty Acids

• Essential fatty acids (or EFAs) are

polyunsaturated fatty acids that

cannot be constructed within the body

from other components and, therefore,

must be obtained from the diet.

• There are two families of EFAs:

Omega-3 and Omega-6.

• The body can convert one Omega-3 to

another Omega-3, for example, but

cannot create an Omega-3 from scratch.

75© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

76© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Omega-3 and 6 Fatty Acids

Omega-6 fatty acids:

• Linoleic acid (LA) –

essential in the diet.

• Gamma linolenic acid (GLA).

• Arachidonic acid (AA).

Omega-3 fatty acids:

• α-linolenic acid (ALA) -

essential in the diet.

• Eicosapentaenoic acid (EPA).

• Docosahexaenoic acid (DHA).

lino- = Greek for “flax” (linseed)-oleic = relating to olive oil (“oleic acid”)

docosa = Greek for 22 (meaning 22 carbons)eicosa = Green for 20 (meaning 20 carbons)penta = from “pentagon” / 5 (meaning 5 double bonds)hexa = from “hexagon” / 6 (meaning 6 double bonds)-enoic acid = a carboxyl group (-COOH)

arachidonic = From “arachidic”=of the groundnut (the Greek for peanut is arachis), which has a similar fatty acid structure

Note: this will be covered in the “lipids” lecture

77

• Omega-3 fats include:

- ALA – flax seeds, walnuts, green leafy vegetables.

- EPA & DHA – oily fish.

• Omega-6 fats include:

- LA – vegetable oils, most nuts & seeds.

- GLA – borage oil, evening primrose oil.

- AA – meat, dairy and eggs.

• For healthy cells and healthy cell-to-cell communication, a diet would ideally contain a well-sourced variety of Omega-3 and 6 fats.

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Omega-3 and 6 Fatty Acids

78© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• The conversion of ALA to EPA and DHA is only about 10% efficient, and even lower for LA to GLA and AA.

• This conversion for LA and ALA is dependent upon the same enzymes. It will ultimately favour the EFA that is in abundance (often Omega-6).

• The conversion between them involves adding in double bonds. This involves ‘desaturase’ enzymes.

• Most western diets are rich in Omega-6; especially arachidonic acid. This is pro-inflammatory.

Omega-3 and 6 Fatty Acids

3

6

Functions of EFAs

• Fluidity and structure of cell membranes.

• Synthesis of prostaglandins – hormone-like substances responsible for many functions at cellular level and regulating body processes.

• Regulate oxygen use, electron transportation and energy production.

• Help to form haemoglobin.

• Support the production of digestive enzymes.

• Help make the lubricants for joints.

• Help transport cholesterol in the blood.

• Help generate electric currents and keep the heart rate regular.

• Needed by the tissues of the brain, retina, adrenal glands and testes.

• Help balance the immune system and prevent allergies.

• Ensure proper nerve transmission especially in the brain.79

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

• Polyunsaturated fats such as EFAs are very prone to becoming free radicals.

• When these fats are heated, electrons can be lost. This means that a fat is formed that becomes a free radical. This then further reacts with the oxygen in the air over the cooking pan which becomes even more damaging.

• The CH2 groups between the double bonds are especially vulnerable because radicals formed at these points in the molecule are very stable.

• The damaged fats formed will be incorporated into cell membranes.

80© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Oxidation of Fatty AcidsRecall:OIL RIG

Oxidation of Fatty Acids

81

• Radical formation is accelerated by light, oxygen and heat.

• Keep polyunsaturated fats in dark glass bottles in the fridge – never use for cooking!

• To cook with, you should use saturated fats (where there are no vulnerable points for electrons to be stolen), e.g. organic coconut oil (for higher temperatures).

• It is thought that olive oil can be usedto cook at lower temperatures because it only has one double bond.

• However, it has been shown that Extra VirginOlive Oil remains stable when cooked at higher temperatures. This exception is thought to be due to its higher antioxidant content.

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Exercise

• Come up with a definitive list of

recommendations for clients regarding

the use and storage of the different fats.

– Which fats should they be using to cook

with?

– What fats shouldn’t be heated?

– How should unsaturated fats be stored?

– What quality criteria should be

considered when choosing fats and oils?

82© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Lipoproteins

• A lipoprotein is a fat molecule that has been joined to a protein molecule, enabling the lipid to move around the bloodstream.

• Lipoproteins contain triglycerides and cholesterol internally.

• Remember that fats are hydrophobic.

• Lipoproteins are synthesised by the liver.

• Note: Chylomicrons carry triglycerides from the intestines to the liver, skeletal muscle, and adipose tissue.

83© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Triglycerides

and Cholesterol

Phospholipid

Types of Lipoprotein

• Very Low Density Lipoproteins (VLDL) - carry newly synthesised triglycerides from the liver to adipose tissue (if high:a sign of over-eating).

• Low Density Lipoproteins (LDL) -carry cholesterol from the liver to cells of the body. Needed to repair cells,support cell membranes and synthesise sex and adrenal hormones.

• High Density Lipoproteins (HDL) - collect cholesterol from the body's tissues, bringing it back to the liver.

• The balance between LDL and HDL is ultimately important. 84

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

LDL HDL

Phospholipids

• Phospholipids contain a glycerol part & two fatty acid chains.

• The phosphate head contains lots of –OH molecules which make it hydrophilic. It is, therefore, polar and water-soluble.

• The fatty acid tails are non-polar and interact only with other lipids. They are hydrophobic and fat-soluble.

• The fatty acid tails can contain saturated and unsaturated fats (i.e. mono/poly). Cells should contain a balance of these to support a healthy cell membrane structure that is not excessively rigid or fluid.

• As they are soluble on one side and insoluble on the other, they are known as ‘amphiphatic’.

85© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Steroids

• Steroids are lipids that are formed from cholesterol.

• They differ in shape from triglycerides, where they are formed of four rings of carbon atoms joined together at their base.

• Sterols are steroid bases that contain an –OH group.

• Steroids are used to create hormones, e.g. oestrogen, testosterone, cortisol, etc.

• We do not need to eat/ingest cholesterol because the liver can produce it.

86© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.

Summary Quiz

1. Name TWO monosaccharides.

2. Explain what is meant by an isomer?

3. What is the name of the type of bond between two monosaccharides?

4. Which digests faster – amylose or amylopectin, and why?

5. Where is glycogen stored?

6. Give THREE benefits of a fibre-rich diet.

7. Why are lipids hydrophobic?

8. What are trans-fats and when are they commonly formed?

9. Explain how Omega-3 and 6 fats are named.

10.Which types of fat are particularly prone to oxidation?87

© CNM: Nutrition Year 1 – Chemistry & Biochemistry I. BQ.