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2211NE50thSt.Apt5,Seattle,WA98105M:2062148296,[email protected]
August7,2015
SUMMARYProteomicistandcellbiologistwith5yearsofexperienceconductinglargescaleexperimentsonhighresMSinstrumentationanddevelopingbioinformaticsworkflowstoaddressquestionsinmammalianhealth/disease.ProficientinRprogrammingforhandlingandinterpretinglargebiologicaldatasets.
Establishedanewbioinformaticspipelinewhichincreasedefficiencyoflargeproteomicstudiesbymanyfold. WroteanddevelopedaseriesofRscriptsforanalysisoflargedatasets,including:optimization,filtering,
normalization,curation,databasematching,regressions,andvisualizations. ExperiencedincreatinganddeployingRapplicationsonthewebusingShiny.
Skilledinmassspectrometry(nLCMS/MS)withastrongrecordofperforminglabelfreeandlabeledshotgun(DDA)analysisofpeptidesusinghighresolutioninstrumentation
UtilizedmetaboliclabelingandMStosimultaneouslyquantifyglobalproteinabundancesandturnoverrates Developedanunprecedentedmethodofcharacterizingpolyubiquitinmediatedhomeostasisonalargescale
byintegratingbothabundanceandturnoverdatatothisenrichedsubsetofmodifiedproteins Proficientwithvariousanalysistoolsandsoftwareforlargeandsmallproteomicdatasets(seeskills). ExperienceoperatingtheLTQFTUltraandLTQOrbitrapVelosspectrometerswithananoACQUITYUPLC
chromatographysystem.Wetlaboratoryexperienceincludingproteinpreparation,activityassays,qPCR,westernsandmousework.
SKILLS
RProgramming BasicShinyapps
(nbasisty.shinyapps.io/qvalues) LCMS/MSTechniques XcaliburSoftware
SkylineSoftwareCertified TopographSoftware Proteinprep:pulldowns,
fractionation,precipitation MSDaPl(spectralcounting)
Sequest&Percolator(FDR) WesternBlots,QPCR,
EnzymeActivityAssays IngenuityPathwayAnalysis Mousework
EDUCATIONPh.D.MolecularBasisofDisease (expected)2015DepartmentofPathology,UniversityofWashington,Seattle,WAB.S.Biochemistry 2009UniversityofWashington,Seattle,WA
RESEARCHGraduateResearchAssociate(T32AG000057fellowshipaward) 20102015DepartmentofPathology,UniversityofWashington,Seattle,WAPrincipalInvestigator:PeterRabinovitch
UtilizedacombinationofMSandmetaboliclabelingacrossseveraltissuesinmicetoestimatechangesinabundancesandturnoverratesforthousandsofproteinsduringagingandseveralaginginterventions,includingcalorierestriction,rapamycin,mitochondriatargetedcatalase,andmitochondriatargetedSSpeptides.
Designedanovelproteomicmethodtoperformthefirsteverlargescaleturnoverestimationsofpolyubiquitinatedproteins,andwhilesimultaneouslydeterminingchangesinabundanceofthesemodifiedproteins.
Pioneeredtheuseofmanybioinformaticsandproteomictoolsinthelabandimplementedaworkflowwithgreatsuccesslargescalestudiesarenowroutinelydone5+timesfaster(frommonths/yearstoweeks).
Leveragedthisexpertisetowardmanyproductivecollaborationsbothwithinandoutsidethelab,includinginvestigatorsinotheruniversities.
LabTechnician/UndergraduateResearch 20082010DepartmentofPharmacology,UniversityofWashington,Seattle,WAPrincipalInvestigator:JoeBeavo
IndependentlyuncoveredactivityofphosphodiesterasevariantPDE8inmousebonemarrowderivedmacrophagesinmice,andperformedpreliminarycharacterizationofitsroleininflammation.
AssistedincharacterizationofPDE4ininflammationanditspotentialasatherapeutictargetinmousemodelsofchronicinflammatorydiseases,includingCOPDanddiabetes.
Benchwork:Doseresponsecurves,PDEactivityassays,westernblots,ELISAs,genotypingandqPCR. Mousework:specialdiets,druginjections,terminalbronchialalveolarlavages,terminalcardiacpunctures,
tissueharvests,bonemarrowextraction,tissueculture,andassistinginglucose/insulintolerancetests.MENTORING
YuxinLiu,SUNYUpstateMedicalUniversity 2014MedicalStudentTraininginAgingResearch(MSTAR)
Project:ProteostasisintheAgingLiver:InvestigationsinProteinAggregates SelectedforPosterPresentationattheAmericanMedicalAssociationResearchSymosium Selectedfororalpresentationat2015AmericanGeratricSocietyMeeting
JasonReynolds,IdahoStateUniversity 2011AmgenScholarsProgram Project:ProteinHomeostasisinAgingandLongevityAssociatedTreatmentsinMice
SELECTEDPUBLICATIONS(**cofirstauthor)PublishedKarunadharmaPP**,BasistyN**,ChiaoYA**,DaiDF,DrakeR,LevyN,RabinovitchPS(2015).RespiratoryChain
ProteinTurnoverRatesinMiceareHighlyHeterogeneousbutStrikinglyConservedAcrossTissues,Ages,andTreatments.TheFASEBJournal.
KarunadharmaPP**,BasistyN**,DaiDF,ChiaoYA,QuarlesE,CrispinD,BielasJ,EricsonN,BeyerRP,MacKayV,MacCossMJ,RabinovitchPS.(2015).SubacuteCalorieRestrictionandRapamycinDiscordantlyAlterMouseLiverProteomeHomeostasisandReverseAgingEffects.AgingCell.
DaiDF**,KarunadharmaPP**,ChiaoYA**,BasistyN**,CrispinD,HsiehEJ,ChenT,GuH,DjukovicD,RafteryD,BeyerRP,MacCossMJ,RabinovitchPS(2014).AlteredProteomeTurnoverandRemodelingbyShorttermCaloricRestrictionorRapamycinRejuvenatetheAgingHeart.AgingCell.13,529539.(winnerofAgingCellBestPaperPrize2014)
InpreparationBasistyN,DaiDF,GagnidzeA,LevyN,LemuelG,FredricksonJ,BeyerRP,HsiehEJ,MacCoss
MJ,RabinovitchPS.OverexpressionofMitochondrialTargetedCatalaseExhibitsReverseAntagonisticPleiotropyintheAgingProteome.AntioxidantandRedoxSignaling.
BasistyN,KarunadharmaPP,ReynoldsJ,LiuY,FredricksonJ,MacCossMJ,RabinovitchPS.TheChangingLandscapeofPolyUbiquitinMediatedHomeostasisinAging,CalorieRestriction,andRapamycinTreatment.
SELECTEDPRESENTATIONSOralPresentationsMitochondriaandMetabolismInterestGroupSeminar.UWSouthLakeUnion,Seattle,WA.June6th,2014.High
HeterogeneityinTurnoverRatesofRespiratoryChainProteinsisConservedacrossTissuesandTreatmentsinMice.
AmericanAgingAssociation43rdAnnualMeeting.SanAntonio,Texas.May31,2014.TheChangingLandscapeofPolyUbiquitinMediatedHomeostasisinAging,CalorieRestriction,andRapamycinTreatment.
PosterPresentationsUSHUPO10thAnnualConference.Seattle,WA.April7th,2014.HighHeterogeneityinTurnoverRatesofRespiratory
NATHANBASISTY PAGE3ChainProteinsisConservedacrossTissuesandTreatmentsinMice
GerontologySocietyofAmerica66thAnnualScientificMeeting.NewOrleans,Louisiana.Nov21,2013.MultiTissueAssessmentofMitochondrialRespiratoryChainTurnoverwithAge,CR,andRapamycinTreatment.
GRANTS/FELLOWSHIPSGeneticApproachestoAgingTrainingGrantNIAT32AG00057 2012PresentGlenAFARScholarshipforResearchintheBiologyofAging2015Present
HONORS/AWARDSAgingCellBestPaperPrize2014 2015GlenAFARScholarshipforResearchintheBiologyofAging2015HonorSocietyDeansListWhosWhoAmongStudentsinAmericanJuniorCollegesPhiThetaKappaHonorsScholarProgramVicePresidentialHonorRollRunningStartDeansList
2013201520082009200520062005200620042006200420062004200620042005
ADMINPathPresentsGraduateStudentSpeakerSelectionCommitteeAbstract/symposiumsubmissionreviewer,GerontologySocietyofAmerica
201520142015
AVOCATIONALModeratorforAskScience(http://www.reddit.com/r/AskScience)ModeratorforGerontology(http://www.reddit.com/r/Gerontology)SportsMedicineClubSecretaryStudentsforProgressiveChangememberInternationalServiceLearningProjectCulturalCafHost
201420152008200920042006200520062005200620052006
REFERENCESPeterS.Rabinovitch,MD.,PhD.UniversityofWashingtonDepartmentofPathologyBox3577051959NEPacificStreet,HSBK081Seattle,[email protected]
GeorgeM.Martin,M.D.UniversityofWashingtonDepartmentofPathologyBox3574701959NEPacificStreet,HSBK543ASeattle,[email protected]
MichaelMacCoss,PhDUniversityofWashingtonDepartmentofGenomeSciencesFoegeBuildingS113372015thAveNESeattle,[email protected]
MattKaeberlein,PhDUniversityofWashingtonDepartmentofPathologyBox3574701959NEPacificStreet,HSBD514Seattle,[email protected]