23
Mining Mystery: The effect of acid mining (sulfur compounds) on Bacillus Mycoides found on the stalk of wild rice (Zizania palustris) Cassandra Roy Grade 12

Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

  • Upload
    phungtu

  • View
    213

  • Download
    0

Embed Size (px)

Citation preview

Page 1: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Mining Mystery: The effect of

acid mining (sulfur compounds) on Bacillus Mycoides found on the stalk of wild rice

(Zizania palustris)

Cassandra Roy Grade 12

Page 2: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

•  Wild Rice, Manoomin, is a vital part of the Anishinaabe diet –  Ojibwee people have

harvested wild rice (Zizania palustris) for over 2,000 years

•  But Ojibwe people are now concerned for their wild rice beds http://o.aolcdn.com/photo-hub/news_gallery/

7/1/711797/1302866984619.JPEG

Introduction

Page 3: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Introduction •  The largest deposit of copper

and nickel has been discovered in northern Minnesota –  Copper and nickel are

extracted from tons of sulfur-bearing rock

–  Creating sulfuric acid •  Leaches heavy metals

–  Mercury and arsenic –  Ground water, rivers, and

lakes –  Where wild rice beds may

be located (Kraker, 2012; Marcotty, 2011)

Page 4: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Introduction •  Minnesota Department of

Natural Resources analysis –  Natural wild rice stands –  Sulfate levels in 2000

Minnesota bodies of water –  Over thirty years

•  Predominantly –  Sulfate levels above 10 mg/

L –  No natural and self-

perpetuating wild rice stands exists in Minnesota (Maccabee, 2011)

http://www.nature.org/ourinitiatives/habitats/riverslakes/explore/explore-the-mississippi-river-day-1-afternoon-mother-natures-sacred-gift.xml

Page 5: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania
Page 6: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Question/Hypothesis

•  What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania palustris)?

•  If Bacillus mycoides cultured from wild rice stalk (Zizania palustris) is exposed to acid mine drainage (sulfur compounds), then colony growth will be negatively affected.

Page 7: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Method Table

Page 8: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Nutrient Agar (only SO4) Serial dilutions of 0, 10, 50, 100, and 200 mg/L of sulfate (S04).

•  Bacillus mycoides was inoculated on nutrient agar plates –  Three plates per concentration –  Twenty one trials –  Three control plates not inoculated

with bacteria and three without sulfate

–  Incubated at room temperature for three days

Page 9: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Nutrient Agar (only SO4)

•  Placed under a quadrant counter –  Percentage of bacteria

per plate was recorded

•  As the amount of sulfate increased the percentage of bacteria increased

Page 10: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Plain Agar (SO4) Effects of just sulfur compounds minus the nutrient affect •  Serial dilutions 10, 100 and 300 mg/

L (SO4) •  Sixty agar plates were inoculated

with Bacillus mycoides •  No growth occurred after three days

of incubation at room temperature •  Possibly the Bacillus mycoides culture

was dead.

The above procedure was again repeated with sixty agar plates, again, no growth occurred

Page 11: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Plain Agar With Wild Rice Stalks

•  Five plain agar plates •  Five grams (two

centimeters) of a sterile wild rice stalk

•  Inoculated with Bacillus mycoides

•  The agar plates did not visually show any growth

•  Minimal growth of Bacillus mycoides was indicated microscopically.

Page 12: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Agar 5% Glucose (Carbon Energy SO4, SO3, and S2 ) •  10, 100 and 300 mg/L)

of the three sulfur compounds

•  Plain agar and five percent glucose (carbon energy)

•  Sixty agar plates were inoculated

•  After a three day incubation, again no growth occurred

Page 13: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Agar 5% nutrient (Never Jelled)

•  Previous procedure was repeated –  Five percent nutrient, and

only nutrient agar –  Added to 100 milliliters of

sterile water

•  Growth was apparent, but the agar did not gel and bacterial growth could not be measured

Page 14: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

95% Agar, 5% Nutrient Agar

•  Previous procedure was repeated –  95% plain agar with

5% nutrient agar •  Finally, measureable

growth occurred •  Sixty plates was held up to

a light •  Maximum growth was

measured –  Across the agar plates

Page 15: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

•  The amount of bacterial growth per treatment was compared for statistical difference using a computer program called SPSS

•  A Univariate Analysis of Variance (ANOVA) was done to determine if there was a difference in bacterial colony growth due to the sulfur compounds or just due to chance. A probability or p value of p<.05 was used to determine significance.

Statistics

Page 16: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania
Page 17: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania
Page 18: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Conclusion •  The original hypothesis was if

Bacillus mycoides cultured from wild rice stalk (Zizania palustris) was exposed to acid mine drainage (sulfur compounds), then colony growth will be negatively affected

•  The hypothesis was partially supported depending on the nutrient situation

•  As the sulfur compound concentrations increased

–  Increased in high nutrient –  Bacterial growth significantly

decreased (p<0.017) low nutrients

•  Not for the 10 mg/L sulfur compound concentrations (p<0.301)

http://thetyee.ca/News/2011/05/23/MiningMess/

Page 19: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Conclusion •  Minnesota (1973) water quality

ruling –  Limiting sulfates to 10

milligrams per liter (mg/L) in wild rice waters.

(Maccabee, 2011)

•  Bacillus mycoides cultured from wild rice stalks –  Similar growth rates –  Significantly reduced growth

above 10 mg/L in wild rice waters

•  There appears to be a relationship between Sulfur compound levels, Bacillus mycoides growth and that of Wild Rice in Minnesota Lakes

•  Supporting the idea that B. mycoides is the unknown bacterial in Pastor, Walker, and Dewey (2011)

Page 20: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

•  Pastor, Walker, and Dewey (2011) found four year cycling of wild rice stand growth

•  B. mycoides could be a key player in the cycling

•  In the presence of a unlimited nutrients like

–  Large biomass wild rice/Nutrient agar plate

–  The growth of B. mycoides increases

–  Breaking down wild rice liter –  High carbon to nitrogen ratio –  Diverting nitrogen from the

water

Conclusion

C:N

•  Yet when in a low nutrient agar –  Sulfur compounds appeared to have a

negative affect on bacterial growth. –  Subsequent low nitrogen levels leads to

wild rice biomass oscillations

Page 21: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

C:N

Page 22: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

References •  Athukorala, S. N., Fernando, W., & Rashid, K. Y. (2009). Identification of antifungal antibiotics of Bacillus species isolated from

different microhabitats using polymerase chain reaction and MALDI-TOF mass spectrometry. NRC, 55, 1021-1032. •  Bach, H. J., Errampalli, D., Leung, K. T., Lee, H., Hartmann, A., Trevors, J. T., & Munch, J. C. (1999). Specific Detection of the Gene

for the Extracellular Neutral Protease of Bacillus cereus by PCR and Blot Hybridization. Applied and Environmental Microbiology, 65, 1-7.

•  Binder, C. (2007). Wild at Heart. Proquest. Retrieved December 12, 2012. •  Borah, B., Thakur, P. S., & Nigam, J. N. (2002). The influence of nutritional and environmental conditions on the accumulation of poly-

B-hydroxybutyrate in Bacillus mycoides RLJ B-017. Journal of Applied Microbiology, 92, 776-783. •  Di Franco, C., Beccari, E., Santini, T., Pisaneschi, G., & Tecce, G. (2002). Colony shape as a genetic trait in the pattern forming Bacillus

mycoides. BMC Microbiology, 1-15. Retrieved October 19, 2012. •  Drewes, A. D., & Silbernagel, J. (2012). Uncovering the spatial dynamics of wild rice lakes, harvesters and management across Great

Lakes landscapes for shared conservation. Ecological Modeling, 229, 97-107. •  Durkee Walker, R. E., Pastor, J., & Dewey, B. W. (2010). Litter Quantity and Nitrogen Immobilization Cause Oscillations in

Productivity of Wild Rice (Zizania palustris L.) in Northern Minnesota. Ecosystems, 13, 458-498. •  Eule-Nashoba, A. R., Biesboer, D. D., & Newman, R. M. (2012). Seed size in lacustrine and riverine population of wild rice in northern

Minnesota and Wisconsin. Botany, 90, 27-33. •  Eule-Nashoba, A. R., Biesboer, D. D., & Newman, R. M. (2012). Seed size in lacustrine and riverine populations of wild rice in northern

Minnesota and Wisconsin. Botany, 90, 27-33. •  Gumbo, J. R., & Cloete, T. E. (2011). The mechanism of Microcystis aeruginosa death upon exposure to Bacillus mycoides. Physics and

Chemistry of the Earth, 36, 881-886. •  Kraker, D. (2012, December 4). Copper-nickel deposit estimates grow near BWCA. MPR News. Retrieved December 13, 2012. •  Lee, P. (2002). Ecological relationships of wild rice, Zizania spp. 10. Effects of sediment and among-population variations on plant

density in Zizania palustris. Canadian Journal of Botany, 80(12), 1283-1294. doi: 10.1139/b02-118 •  Leonard, E. N., Mattson, V. R., Benoit, D. A., Hoke, R. A., & Ankley, G. T. (1993). Seasonal variation of acid volatile sulfide

concentration in sediment cores from three northeastern Minnesota lakes. Hydrobiologia, 271, 87-95. •  Maccabee, P. (2011, March). Wild Rice and the Sulfate Standard. Water Legacy. Retrieved September, 2012, from www.waterlegacy.org •  Magnuson, J. (2012). The good grain. Christian Century, 10-11. •  Marcotty, J. (2011). Minnesota's mining boom: New riches or new threat. Star Tribune. Retrieved December 26, 2012. •  Mercury Poisoning. (n.d.). MedicineNet.com. Retrieved December 1, 2012. •  Minnesota Pollution Control Agency (MPCA) (2011). Wild Rice/Sulfate Protocol Development Discussion Document, 1-29. •  MPCA Response to Comments Received Regarding Hydroponic Experiments. (2012). MPCA Response to Comments, 1-5. •  Myrbo, D. (2011). Wild rice-sulfate 2011 preliminary field study. Preliminary Field Study, 1-7. Retrieved December 26, 2012. •  Nakamura, L. K. (1998). Bacillus pseudomycoides sp. nov. International Journal of Systematic Bacteriology, 48, 1031-1035. •  P. (n.d.). Guardians of manomin: Aboriginal self-management of wild rice harvesting. Alternatives, 19.3, 29. •  Sims, L., Pastor, J., Lee, T., & Dewey, B. (2012). Nitrogen, Phosphorus, and light effects o reproduction and fitness of wild rice. Botany,

90, 876-883. •  Sims, L., Pastor, J., Lee, T., & Dewey, B. (2012). Nitrogen, phosphorus and light effects on growth and allocation of biomass and

nutrients in wild rice. Oecologia, 170, 65-76. •  Sulfite reductase. (2002). Unitpro. Retrieved December 26, 2012. •  Walker, R. D., Pastor, J., & Dewey, B. W. (2006). Effects of wild rice (Zizania palustris) straw on biomass and speed production in

northern Minnesota. NRC Canada, 84, 1019-1024. •  Wilcox, L. (2012). Going with the grain. EBSCOhost, 38(6), 94-96.

Page 23: Mining Mystery: The effect of acid mining (sulfur ... · • What is the effect of acid mining (sulfur compounds) on Bacillus mycoides found on the stock of wild rice stalk (Zizania

Acknowledgements

•  I would like to thank: •  Dr. Cynthia Welsh for six years of support

and mentoring •  Michael Gillespie biochemistry professor

at Fond du Lac Tribal College for his supervision and the use of his lab

•  Holly Pellerin for supporting my project and travels