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M. J. Davis, Huiqin Chen, and Maria Peacock University of Florida, IFAS Citrus Research and Education Center

M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

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Page 1: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

M. J. Davis, Huiqin Chen, and Maria Peacock

University of Florida, IFASCitrus Research and Education Center

Page 2: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

aflèche, D., and Bové, J. M. 1970. Mycoplasmas dans les agrumes atteints de "greening", de "stubborn" ou de maladies similaires. Fruits d'outre-mer, 25(6):455-465.

hosh, S. K., Raychaudhuri, S. P., Varma, A., and Nariani, T. K. 1971. Isolation and culture of mycoplasma associated with greening disease. Current Science 40:299-300.

arnett, H. M. 1985. Isolation of the greening organism. Citrus and Subtrop. Fruit J. 611:4-6.

avis, M. J., Mondal, S. N., Chen, H. –Q., Rogers, M. E., and Brlansky, R.H. 2008. Cocultivation of Candidatus Liberibacter asiaticus with actinobacteria from citrus with huanglongbing. Plant Dis. 92:1547-1550.

echler, A., Schuenzel, E. L., Cooke, P., Donnua, S., Thaveechai, N., P k E S A L S h d W L D V D d S h d

Page 3: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species
Page 4: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Score Sequences producing significant alignments: (Bits)

gi|506778|gb|U11014.1|RBU11014 Rickettsia bellii 16S rRNA gene, 2789 gi|535750|gb|L36103.1|RIRRGDF Rickettsia bellii 16S ribosomal RN 2763gi|1147763|gb|U42084.1|RPU42084 Rickettsia PAR 16S ribosomal RNA 2759gi|58978283|gb|AY753175.1| Rickettsia endosymbiont of Tetrany... 2728gi|67003925|gb|CP000053.1| Rickettsia felis URRWXCal2, complete 2718 gi|15620042|gb|AE008647.1| Rickettsia conorii str. Malish 7, ... 2686 gi|506787|gb|U11021.1|RRU11021 Rickettsia rickettsii 16S rRNA ge 2686gi|535749|gb|L36102.1|RIRRGDE Rickettsia sp. 16S ribosomal RNA ( 2680gi|70568364|dbj|AB196668.1| Rickettsia sp. PAR-OY gene for 16... 2678 gi|600169|gb|U17645.1|U17645 Rickettsia honei 16S ribosomal RNA

2678 gi|535753|gb|L36106.1|RIRRGDI Rickettsia massiliae 16S ribosomal 2676 gi|538433|gb|L36214.1|RIRRGDM Rickettsia massiliae (strain Mt... 2676 gi|33438751|gb|AF178037.2| Rickettsia heilongjiangii 16S ribo... 2674 gi|6979193|gb|AF120026.1| Rickettsia sp. RpA4 strain RpA4 16S... 2672 gi|31323700|gb|AF510102.1| Rickettsia sp. Chad 16S ribosomal RNA 2670 gi|600168|gb|U17644.1|RAU17644 Rickettsia australis 16S ribosoma 2670gi|538435|gb|L36216.1|RIRRGDO Rickettsia rhipicephali (strain... 2668 gi|529688|gb|U12460.1|RCU12460 Rickettsia conorii ITT-597 16S rR 2666

Page 5: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Unidentified bacterium isolated from babaco or mountain papaya (hybrid of Carica stipulata and C. pubescens).It is an alpha proteobacterium based on its 16S rRNA gene sequence.Not the papaya bunchy top rickettsia

16S rRNA sequences differPBT bacterium did not grow on media developed for the Babaco bacterium

Page 6: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Score E

Sequences producing significant alignments: (Bits)

gi|57918592|gb|AY742824.1| Candidatus Liberibacter americanus... 1961 gi|60267995|gb|AY919312.1| Candidatus Liberibacter sp. LSg2 1... 1503 gi|38426928|gb|AY444978.1| Uncultured bacterium clone M16 1 1427 gi|2290246|gb|U87772.1| Afipia genosp. 6 16S ribosomal R 1417 gi|15430883|gb|AF407383.1| Uncultured bacterium clone RB7C4 1... 1409 gi|15072624|emb|AJ278726.1 Methylocapsa acidiphila ... 1368 gi|73698030|gb|DQ157274.1| Candidatus Liberibacter asiaticus ... 1348 gi|73698029|gb|DQ157273.1| Candidatus Liberibacter asiaticus ... 1348 gi|2570146|dbj|AB008366.1| Liberibacter sp. gene for 16S rRNA, p 1348 gi|73698031|gb|DQ157275.1| Candidatus Liberibacter asiaticus ... 1340 gi|28397343|gb|AY192576.1| Candidatus Liberibacter asiaticus ... 1332 gi|438690|gb|L22533.1 | Liberibacter africanus 16S ribo 1330 gi|60267994|gb|AY919311.1| Candidatus Liberibacter asiaticus ... 1324 gi|11125697|dbj|AB03839.1| Liberibacter endosymbiont of Diap... 1312 gi|438689|gb|L22532.1 | Liberibacter asiaticus 16S ribo 1300 gi|46361651|gb|AY500255.1| Sinorhizobium sp. ORS 1400 16S rib... 1259

Page 7: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

The Babaco bacterium appears to be the most closely related species to the Liberibacter spp. that can be grown in axenic culture at the present time.It follows that the Babaco bacterium might be used in a “model system” for the development of media and procedures for culturing Liberibacter spp.

Page 8: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

per literBrain Heart Infusion 12 gACES 10 gKOH 3.76 gα-Keto Glutaric Acid 2 gMannitol 5 gFerric Pyrophosplate 0.25 mgArabinose 1 gFolic Acid 100 mgDS2 Insect Cell Culture Medium 250 mlFetal Bovine Serum 150 ml

Page 9: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species
Page 10: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

>98% identity of 16S rRNA gene with that of Propionibacterium acnesAerotolerant anaerobeDetection by P. acnes-specific PCR

Healthy and diseased citrus - positiveInfectious and non-infectious psyllids - positive

Page 11: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Liberibacter was growing in association with an actinobacterium.Single colony isolations retained mixed culture at a high frequency.

Suggested that both bacteria benefit from the presence of the other.

Growth of the actinobacterium overshadowed that of Liberibacter.

PCR detection of Liberibacter was often weak and inconsistent

Page 12: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Alternative Approaches to CoAlternative Approaches to Co--Culturing LiberibacterCulturing Liberibacter

• Co-culture with Acanthamoeba polyphaga Attempts were not successful

• Co-culture with insect cellsAttempts using a Drosophia melanogaster S2

cell line have not been successfulAttempts using Diaphorina citri cell lines are

in progress

• Co-culture with organs of Diaphorina citri Attempts using alimentery canal expants

are underway

Page 13: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Biofilm of bacteria on external surface of Diaphoria citrimidgut.

Page 14: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Fluorescent stained bacteria washed from Diaphorina citri alimentary canal

Page 15: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

DAPI stained alimentary canal

FISH stained alimentary canal

Flourescent in situ Hybridization (FISH) probe based on sequence of the OI1 16s rRNA primer labeled with CY3

Page 16: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

FISH stained Las cells washed from alimentary canal surface

Page 17: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Las biofilm on exterior surface of psyllid midgut

Page 18: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Las biofilm on exterior surface of psyllid midgut

Page 19: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Alimentary canal explants are incubated on media designed to support growth of Ca. L. asiaticusGrowth of Ca. L. asiaticus is monitored microscopicallyGoal is to wean Ca. L. asiaticus from explant and grow it axenically in improved media

Page 20: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Provides a high inoculum dose of Ca. L. asiaticusEvidence of growth can be monitored microscopically and media modified accordingly

Page 21: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species

Ca. L. asiaticus found in approximately only 20-30% of psyllidsOriginal concentration of Ca. L. asiaticus is imposable to predictNon-target microorganisms are often present and overrun culture

Page 22: M. J. Davis, Huiqin Chen, and Maria Peacockswfrec.ifas.ufl.edu/hlb/database/pdf/00002017.pdf · 2010. 5. 17. · The Babaco bacterium appears to be the most closely related species