Upload
erin-fleming
View
216
Download
0
Tags:
Embed Size (px)
Citation preview
Lecture 5
Web: pollev.com/ucibio
Text: To: 37607Type in: 169964 <your
question>
OK. What does this all have to do with enzymes?
Anfinsen’s experiment
Took a protein (AP) & forced it to unfold
- Protein lost activityTherefore:______________________________Allowed protein to recover
- Over time, activity returned
Therefore:______________________________
What does a protein need in order to fold?
Protein folding information contained in
primary amino acid
sequence!OK. But how does amino acid sequence
“fold?”
Peptide bond is planar…
…but not bonds on either side!
Rotation of bonds around peptide bond
Peptide backbone rotation
“Folding” proteins
Amino acids have different propertiesDifferent preferred Psi and Phi anglesBonds can rotate and pivot
Secondary structure
3D structure
H-bonds between C=O & N-H
C=O & N-H of peptide bonds
Close together in primary structure
Folding into secondary structures
Bond rotation causes secondary structurea-helix
b-sheet
Bends, Loops, Disordered
The a-helix: Annotate
Different parameters define a-helix
b-Sheet: Annotate
b-Sheets
Sheets can be twisted
Bends / Loops
Bends or Loops: ImportantStructured/Unstructured
Tertiary structrue
Bring secondary structure elements together
Hydrophobic interactions important
Unstructured regions important
The a-helix
Arrangement of side chains important
Tertiary structure
Tertiary structrue
Take picture
Upload to Dropbox assignment “Barrel structure”