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Lecture 1 Intro to Molecular Biology

Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

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Page 1: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Lecture 1 Intro to Molecular Biology

Page 2: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Major Types of Molecules in a Cell

• Protein

• DNA

• RNA

Page 3: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 4: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 5: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

https://www.youtube.com/watch?v=qBRFIMcxZNM

Page 6: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

• DNA carries genetic information

• DNA is a double helix of two complementary strands formed by four nucleotides (bases):

Adenine, Cytosine, Guanine and Thymine 6 of 31

Page 7: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 8: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 9: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 10: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 11: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 12: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 13: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 14: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 15: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

https://www.youtube.com/watch?v=zwibgNGe4aY

Page 16: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 17: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Genes • A gene is a segment of DNA that encodes for

one or more polypeptide chain (protein)

• In Eukaryotes, a gene consists of alternating regions called exons and introns

• Exons correspond to coding regions

Page 18: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

• Gene expression is the process by which DNA is transcribed into mRNA (eventually translated into proteins)

• Mechanisms controlling gene expression are not fully understood yet 18 of 31

Page 19: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Transcription is the first step of gene expression, in which a particular segment of DNA (gene) is copied into RNA by the enzyme RNA polymerase.

Page 20: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

2013 Nature Education

Page 21: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Transcription in Eukaryotes:

1. A gene is copied into a primary RNA, mRNA precursor

2. Introns are removed in a process called splicing

3. Poly-tail of A’s is attached at 3’ end of mature mRNA

Page 22: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Splicing is a process of removal of introns from the primary RNA

Page 23: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

Translation is the process of synthesizing a protein from mRNA

Genetic code: Triplets of mRNA bases (codons) associate with corresponding amino acids

Page 24: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

https://www.youtube.com/watch?v=OEWOZS_JTgk

Page 25: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 26: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 27: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 28: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 29: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process
Page 30: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

billion

Page 31: Lecture 1 Intro to Molecular Biologyalumni.cs.ucr.edu/~elenah/courses/CSCI598/Lecture1.pdf · 1. A gene is copied into a primary RNA, mRNA precursor 2. Introns are removed in a process

• Next generation sequencing (NGS) technology revolutionized genomic research

• NGS technology allows fast and inexpensive DNA sequencing producing hundreds of millions of DNA sequenced reads – Sequence DNA fragments

– Map reads back to a reference genome

– Analyze the data

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