1
Epitope Mapping blah A B Figure 6. Identification of epitopes on HPV-16 L1 surface protein. Optical densities were obtained from a neutralization assay done in triplicate for each Ab/psV pair (low optical density = neutralization occurred; high optical density = neutralization did not occur). From those values, we were able to calculate percent neutralization for each Ab against each hybrid psV, and determine the epitope each antibody acts on. Wildtype HPV-16 and HPV-31 were the positive and negative controls respectively. Two Abs (7xb23 [IgA] and 6nv02 [IgG]) bound to the FGb loop. D25B01 (IgG) bound to the FGb loop and FGa loop. B25B01 (IgG) bound to the EF loop. HPV psV Composi2on and Ab Binding Specificity Figure 5. Abs bound specifically to exposed loops on the surface of HPV. A) HPV psVs are composed of capsids made from structural proteins L1 and L2, encasing an Alkaline Phosphatase reporter plasmid. The ribbon structure of an HPV-16 L1 capsomere is shown 4 . Abs bind to the surface-exposed loops of the L1 capsomere 5 . B) Corresponding L1 loops are found on all HPV types, but the amino acid sequence of a loop varies between types. Abs are therefore HPV type specific. Areas of high variability in the amino acid sequences of four loops are shown, comparing HPV-16 to a different HPV type. To determine the epitope of a specific antibody, hybrid psVs were made, substituting one loop on HPV-16 to the HPV-18 or HPV-2 loop. A neutralization assay (Fig. 3) was used to observe whether Ab neutralizing activity had been disrupted by the mutation. If the Ab no longer neutralized a hybrid psV, it was inferred that the mutated loop was the Ab’s epitope. Pseudovirus Alkaline Phosphatase Reporter Plasmid L2 monomers L1 monomers Capsomeres 18DE 18EF 2FGb 18FGa 31 WT 16 WT 0 25 50 75 100 18DE 18EF 2FGb 18FGa 31 WT 16 WT 0 25 50 75 100 18DE 18EF 2FGb 18FGa 31 WT 16 WT 0 25 50 75 100 18DE 18EF 2FGb 18FGa 31 WT 16 WT 0 25 50 75 100 B25B01 % Neutralization Mutation D25B01 % Neutralization Mutation 7xb23 Mutation % Neutralization 6nv02 Mutation % Neutralization Introduc2on Human Papillomaviruses (HPVs) are the most common sexually transmitted infection in the United States. Oncogenic HPV types are associated with 99.7% of cervical cancers worldwide, with HPV type 16 being the most prevalent. A vaccine composed of two or more Virus Like Particles (VLPs) protects against HPV infection with almost complete efficacy in non-exposed individuals 1 . The vaccine protects by eliciting antibody (Ab) production, as well as B memory cells (Bmem). HPV-16 specific Bmem from qHPV vaccinated women have been previously isolated and characterized, and Abs from these cells were cloned 2,3 . Hypothesis: Antibodies cloned from HPV-16 specific B memory cells of qHPV vaccinated women would neutralize HPV-16 by binding to L1 protein sequences on the surface of HPV-16 VLPs. Conclusions HPV-16 specific antibodies cloned from B memory cells of women vaccinated with the quadrivalent HPV vaccine are potently neutralizing for HPV-16. We found an IgA, 7xb23, that potently neutralizes HPV-16. This is the first IgA found to do so. Kate Sizer 1,2 , Kris2ne Dye 1,3 , Erin Scherer 1 , Robin Smith 1 , Greg Wipf 1 , Jody Carter 1 , Denise Galloway 1 1 Fred Hutchinson Cancer Research Center, Sea5le, WA; 2 Whitman College, Walla Walla, WA; 3 University of Washington, Sea5le, WA Acknowledgements Galloway Lab Denise Galloway Jody Carter Greg Wipf Robin Smith Kristine Dye Erin Scherer James Russo This work is funded by the National Institute of Health, grant: “HPV Capsid Antibodies”, NIH NIAID R01 AI038382-22A1. The Summer Undergraduate Research Program is supported in parts by the Whitman College Summer Research Fund, the Cancer Center Support Grant (CCSG) CURE Supplement: 3 P30 CA015704-41S1, the Fred Hutch Internship Program, and individual labs/research groups. Virus Like Particle: -VLPs are used in the HPV vaccine. -Assembled from the major capsid L1 protein (no L2 or viral DNA). -Quadrivalent vaccine (qHPV) protects against HPV types 16, 18, 6 and 11. Virus: -Icosahedral protein capsid made of structural proteins L1 and L2. -Encases circular viral dsDNA containing 8 genes. Viral Genome L2 monomers VLP Virus L1 monomers Capsomeres 5x 72x Future Direc2ons Repeat the epitope mapping process on antibodies cloned from B memory cells specific to other high-risk HPV types. The ability of HPV VLPs to induce very high titer antibody responses has led to the proposal to use them as the backbone for the presentation of epitopes from other, less immunogenic viruses. Understanding which loops act as immunodominant epitopes will aid in the design of future vaccines. Literature Cited 1. Muñoz N, Kjaer SK, Sigurdsson K, Iversen OE, Hernandez-Avila M, et al. (2010) Impact of human papillomavirus (HPV)-6/11/16/18 vaccine on all HPV-associated genital diseases in young women. J Natl Cancer Inst. 102(5): 325-39 2. Scherer EM, Smith RA, Simonich CA, Niyonzima N, Carter JJ, et al. (2014) Characteristics of memory B cells elicited by a highly efficacious HPV vaccine in subjects with no pre-existing immunity. PLoS Pathog 10(10): e1004461. 3. Scherer EM, Stern M, Smith RA, Thurston T, Gallego DF, et al. (2016) A single human papillomavirus vaccine dose improves B cell memory in previously infected subjects. EBioMedicine. http://dx.doi.org/10.1016/j.ebiom.2016.06.042. 4. Bishop B, Dasgupta J, Klein M, Garcea R, Christensen N, et al. (2007) Crystal structures of four types of human papillomavirus L1 capsid proteins. J. Biol. Chem. 282: 31803-31811. 5. Carter JJ, Wipf GC, Madeleine MM, Schwartz SM, Koutsky LA, et al. (2006) Identification of human papillomavirus type 16 L1 surface loops required for neutralization by human sera. J.Virol. 80: 4664-4672. Epitope mapping showed antibody binding sites at FGb, FGa, and EF. One antibody (D25B01) bound to both FGb and FGa. 6nv02 B25B01 7xb23 D25B01 Characteriza2on of An2bodies -4 -2 0 2 -150 -100 -50 0 50 100 Neutralizing An2bodies % Neutralization Log Ab Concentration (nM) Figure 4. Abs cloned from HPV-16 specific Bmem were potently neutralizing. Abs were tested for neutralizing activity (Fig. 3). H16V5 was used as a positive control. The mAb 7xb23 was the first IgA found to neutralize HPV-16. The other antibodies were IgGs. All other IgAs and some IgGs failed to neutralize (not shown). H16V5 7xb23 D25B01 B25B01 6nv02 Figure 3. Neutralization Assay to determine neutralizing activity and IC 50 of Abs. Abs serial diluted in 96 well plates and incubated with pseudovirus (psV) containing Alkaline Phosphatase reporter gene. A) Abs neutralize virus. Reporter gene not delivered to cell upon 3 day incubation. Low Alkaline Phosphatase activity. No color change. B) Abs fail to neutralize virus. Cells infected during 3 day incubation. Reporter gene delivered. High Alkaline Phosphatase activity. Color change upon addition of substrate. Using a microplate reader, optical densities were determined, corrected for background, and the percent neutralization and IC 50 were calculated. A B Color change Alkaline Phosphatase Substrate No color change psV + reporter plasmid mAbs + Cells incubated with psV+Ab for 3 days Bmem Isola2on and An2body Cloning Study Design Figure 1. In order to obtain HPV-16 specific Bmem, fifteen women were entered into unblinded, randomized studies. Five of ten women who tested positively for HPV-16 received a single qHPV vaccine dose, and five served as controls. The five women who tested negatively for HPV-16 were given the full schedule of 3 doses of the vaccine. Blood samples were collected at day 0 before immunization, and again at week 1 and months 1, 6, 7, 12, 24, and 25. Isola2on of HPV-16 specific Bmem PBMC isolation Flow cytometry whole blood PBMCs Isolated HPV-16 specific Bmem Isola2on of Abs from Bmem Reverse transcribed cellular mRNA to cDNA. PCR amplified cDNA coding for Ab heavy and light chains. Sequenced product to identify chain type and V region usage. Cloned variable regions of heavy and light chains into expression vectors. Cotransfected corresponding heavy and light chains into 293F cells. Purified the secreted Abs. Figure 2. PBMC isolation and flow cytometry were used to isolate HPV-16 specific Bmem. During flow cytometry, we enriched for Bmem and used a fluorophore- HPV-16 psV conjugate to isolate HPV-16 specific Bmem. Neutraliza2on Assay

Kate Sizer1,2, Krisne Dye 1,3, Erin Scherer1, Robin Smith1 ... · The Summer Undergraduate Research Program is supported in parts by the Whitman College Summer Research Fund, the

  • Upload
    others

  • View
    1

  • Download
    0

Embed Size (px)

Citation preview

Page 1: Kate Sizer1,2, Krisne Dye 1,3, Erin Scherer1, Robin Smith1 ... · The Summer Undergraduate Research Program is supported in parts by the Whitman College Summer Research Fund, the

EpitopeMappingblah

A

B

Figure 6. Identification of epitopes on HPV-16 L1 surface protein. Optical densities were obtained from a neutralization assay done in triplicate for each Ab/psV pair (low optical density = neutralization occurred; high optical density = neutralization did not occur). From those values, we were able to calculate percent neutralization for each Ab against each hybrid psV, and determine the epitope each antibody acts on. Wildtype HPV-16 and HPV-31 were the positive and negative controls respectively. Two Abs (7xb23 [IgA] and 6nv02 [IgG]) bound to the FGb loop. D25B01 (IgG) bound to the FGb loop and FGa loop. B25B01 (IgG) bound to the EF loop.

HPVpsVComposi2onandAbBindingSpecificity Figure 5. Abs bound specifically to exposed loops on the surface of HPV. A) HPV psVs are composed of capsids made from structural proteins L1 and L2, encasing an Alkaline Phosphatase reporter plasmid. The ribbon structure of an HPV-16 L1 capsomere is shown4. Abs bind to the surface-exposed loops of the L1 capsomere5. B) Corresponding L1 loops are found on all HPV types, but the amino acid sequence of a loop varies between types. Abs are therefore HPV type specific. Areas of high variability in the amino acid sequences of four loops are shown, comparing HPV-16 to a different HPV type. To determine the epitope of a specific antibody, hybrid psVs were made, substituting one loop on HPV-16 to the HPV-18 or HPV-2 loop. A neutralization assay (Fig. 3) was used to observe whether Ab neutralizing activity had been disrupted by the mutation. If the Ab no longer neutralized a hybrid psV, it was inferred that the mutated loop was the Ab’s epitope.

Pseudovirus Alkaline

Phosphatase Reporter Plasmid

L2 monomers

L1 monomers Capsomeres

1 8 D E 1 8 E F 2 FG b 1 8 FG a 3 1 W T 1 6 W T0

2 5

5 0

7 5

1 0 0

1 8 D E 1 8 E F 2 FG b 1 8 FG a 3 1 W T 1 6 W T0

2 5

5 0

7 5

1 0 0

1 8 D E 1 8 E F 2 FG b 1 8 FG a 3 1 W T 1 6 W T0

2 5

5 0

7 5

1 0 0

1 8 D E 1 8 E F 2 FG b 1 8 FG a 3 1 W T 1 6 W T0

2 5

5 0

7 5

1 0 0

B25B01

% N

eutra

lizat

ion

Mutation

D25B01

% N

eutra

lizat

ion

Mutation

7xb23

Mutation

% N

eutra

lizat

ion

6nv02

Mutation

% N

eutra

lizat

ion

Introduc2on Human Papillomaviruses (HPVs) are the most common sexually

transmitted infection in the United States. Oncogenic HPV types are associated with 99.7% of cervical cancers worldwide, with HPV type 16 being the most prevalent. A vaccine composed of two or more Virus Like Particles (VLPs) protects against HPV infection with almost complete efficacy in non-exposed individuals1.

The vaccine protects by eliciting antibody (Ab) production, as well as B memory cells (Bmem). HPV-16 specific Bmem from qHPV vaccinated women have been previously isolated and characterized, and Abs from these cells were cloned2,3.

Hypothesis: Antibodies cloned from HPV-16 specific B memory cells of qHPV vaccinated women would neutralize HPV-16 by binding to L1 protein sequences on the surface of HPV-16 VLPs.

Conclusions•  HPV-16 specific antibodies cloned from B memory cells of women

vaccinated with the quadrivalent HPV vaccine are potently neutralizing for HPV-16.

•  We found an IgA, 7xb23, that potently neutralizes HPV-16. This is the first IgA found to do so.

KateSizer1,2,Kris2neDye1,3,ErinScherer1,RobinSmith1,GregWipf1,JodyCarter1,DeniseGalloway1

1FredHutchinsonCancerResearchCenter,Sea5le,WA;2WhitmanCollege,WallaWalla,WA;3UniversityofWashington,Sea5le,WA

AcknowledgementsGalloway Lab Denise Galloway Jody Carter Greg Wipf Robin Smith Kristine Dye Erin Scherer

James Russo This work is funded by the National Institute of Health, grant: “HPV Capsid Antibodies”, NIH NIAID R01 AI038382-22A1. The Summer Undergraduate Research Program is supported in parts by the Whitman College Summer Research Fund, the Cancer Center Support Grant (CCSG) CURE Supplement: 3 P30 CA015704-41S1, the Fred Hutch Internship Program, and individual labs/research groups.

Virus Like Particle: -VLPs are used in the HPV vaccine. -Assembled from the major capsid L1 protein (no L2 or viral DNA). -Quadrivalent vaccine (qHPV) protects against HPV types 16, 18, 6 and 11.

Virus: -Icosahedral protein capsid made of structural proteins L1 and L2. -Encases circular viral dsDNA containing 8 genes.

Viral Genome

L2 monomers

VLP

Virus

L1 monomers Capsomeres

5x 72x

Remind the reader (without sounding like you are reminding the reader) of the major result and quickly state whether your hypothesis was supported; try to convince the visitor why the outcome is interesting; state the relevance of your findings to other published work; relevance to real organisms in the real world; future directions. [approximately 200 words]

FutureDirec2ons•  Repeat the epitope mapping process on antibodies cloned from B memory

cells specific to other high-risk HPV types.

•  The ability of HPV VLPs to induce very high titer antibody responses has led to the proposal to use them as the backbone for the presentation of epitopes from other, less immunogenic viruses. Understanding which loops act as immunodominant epitopes will aid in the design of future vaccines.

LiteratureCited1.  Muñoz N, Kjaer SK, Sigurdsson K, Iversen OE, Hernandez-Avila M, et al. (2010) Impact of

human papillomavirus (HPV)-6/11/16/18 vaccine on all HPV-associated genital diseases in young women. J Natl Cancer Inst. 102(5): 325-39

2.  Scherer EM, Smith RA, Simonich CA, Niyonzima N, Carter JJ, et al. (2014) Characteristics of memory B cells elicited by a highly efficacious HPV vaccine in subjects with no pre-existing immunity. PLoS Pathog 10(10): e1004461.

3.  Scherer EM, Stern M, Smith RA, Thurston T, Gallego DF, et al. (2016) A single human papillomavirus vaccine dose improves B cell memory in previously infected subjects. EBioMedicine. http://dx.doi.org/10.1016/j.ebiom.2016.06.042.

4.  Bishop B, Dasgupta J, Klein M, Garcea R, Christensen N, et al. (2007) Crystal structures of four types of human papillomavirus L1 capsid proteins. J. Biol. Chem. 282: 31803-31811.

5.  Carter JJ, Wipf GC, Madeleine MM, Schwartz SM, Koutsky LA, et al. (2006) Identification of human papillomavirus type 16 L1 surface loops required for neutralization by human sera. J.Virol. 80: 4664-4672.

•  Epitope mapping showed antibody binding sites at FGb, FGa, and EF. One antibody (D25B01) bound to both FGb

and FGa.6nv02

B25B01

7xb23 D25B01

Characteriza2onofAn2bodies

-4 -2 0 2

-1 5 0

-1 0 0

-5 0

0

50

100Neutralizing An2bodies

% N

eutra

lizat

ion

Log Ab Concentration (nM) Figure 4. Abs cloned from HPV-16 specific Bmem were potently neutralizing. Abs were tested for neutralizing activity (Fig. 3). H16V5 was used as a positive control. The mAb 7xb23 was the first IgA found to neutralize HPV-16. The other antibodies were IgGs. All other IgAs and some IgGs failed to neutralize (not shown).

H16V5

7xb23

D25B01 B25B01 6nv02

Figure 3. Neutralization Assay to determine neutralizing activity and IC50 of Abs. Abs serial diluted in 96 well plates and incubated with pseudovirus (psV) containing Alkaline Phosphatase reporter gene. A) Abs neutralize virus. Reporter gene not delivered to cell upon 3 day incubation. Low Alkaline Phosphatase activity. No color change. B) Abs fail to neutralize virus. Cells infected during 3 day incubation. Reporter gene delivered. High Alkaline Phosphatase activity. Color change upon addition of substrate. Using a microplate reader, optical densities were determined, corrected for background, and the percent neutralization and IC50 were calculated.

A

BColor change

Alkaline Phosphatase

Substrate

No color change

psV + reporter plasmid

mAbs

+Cells incubated

with psV+Ab for 3 days

BmemIsola2onandAn2bodyCloning

StudyDesign

Figure 1. In order to obtain HPV-16 specific Bmem, fifteen women were entered into unblinded, randomized studies. Five of ten women who tested positively for HPV-16 received a single qHPV vaccine dose, and five served as controls. The five women who tested negatively for HPV-16 were given the full schedule of 3 doses of the vaccine. Blood samples were collected at day 0 before immunization, and again at week 1 and months 1, 6, 7, 12, 24, and 25.

Isola2onofHPV-16specificBmem

PBMC isolation

Flow cytometry

whole blood

PBMCs Isolated HPV-16

specific Bmem

Isola2onofAbsfromBmem•  Reverse transcribed cellular mRNA to

cDNA. •  PCR amplified cDNA coding for Ab

heavy and light chains. •  Sequenced product to identify chain

type and V region usage. •  Cloned variable regions of heavy and

light chains into expression vectors. •  Cotransfected corresponding heavy

and light chains into 293F cells. •  Purified the secreted Abs.

Figure 2. PBMC isolation and flow cytometry were used to isolate HPV-16 specific Bmem. During flow cytometry, we enriched for Bmem and used a fluorophore-HPV-16 psV conjugate to isolate HPV-16 specific Bmem.

Neutraliza2onAssay