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RESEARCH ARTICLE
Inter-island but not intra-island divergence among populationsof sea oats, Uniola paniculata L. (Poaceae)
Cara L. Gormally • J. L. Hamrick •
Lisa A. Donovan
Received: 29 May 2012 / Accepted: 18 December 2012 / Published online: 28 December 2012
� Springer Science+Business Media Dordrecht 2012
Abstract Understanding the underlying causes of phe-
notypic trait variation among populations is important for
informing conservation decisions. This knowledge can be
used to determine whether locality matters when sourcing
populations for habitat restoration. Uniola paniculata is a
federally protected coastal dune grass native to the south-
eastern Atlantic and the Gulf coasts of the USA that is
often used to stabilize restored dune habitats. This study
uses neutral genetic markers (allozymes) and a greenhouse
common garden study to determine the relative contribu-
tions of neutral evolutionary processes and natural selec-
tion to patterns of phenotypic variation among natural
populations of U. paniculata. Seeds were sourced from
foredune and backdune populations spanning shoreline-to-
landward environmental gradients on each of four Georgia
barrier islands. Based on previous work, we expected to
find evidence of divergent selection among populations
located on the shoreline-to-landward environmental gradi-
ent. However, differences among islands, rather than intra-
island habitat differences, drive divergent selection on
aboveground and total biomass. The lack of evidence for
divergent selection across the shoreline-to-landward gra-
dient suggests that previously documented intra-island trait
variation is likely due to phenotypic plasticity. Our findings
have implications for conservation and restoration efforts
involving U. paniculata, as there is evidence for divergent
selection among populations located on neighboring
islands.
Keywords FST � Allozymes � QST � Population
differentiation � Uniola paniculata � Coastal dunes
Introduction
Determining mechanisms that underlie trait variation among
populations is particularly critical for informing restoration
and conservation decisions, e.g., choosing plant material for
transplanting, and maintaining genetic diversity and adaptive
potential (Lynch 1996; Sgro et al. 2011). The source of
transplanted plant material may have a profound effect on the
success of transplant establishment, due to the adaptation of
populations to local environmental conditions (Rice et al.
1997; McKay et al. 2005 and see a meta-analysis by Hereford
(2009) for an in-depth discussion of local adaptation and fit-
ness). However, multiple evolutionary and ecological pro-
cesses may produce trait variation, including local adaption
due to divergent selection among heterogeneous environ-
mental conditions (Turesson 1922; Clausen et al. 1948; Her-
eford 2009), phenotypic plasticity (Via and Lande 1985;
Schlichting and Pigliucci 1998), historical genetic structure
(Batista et al. 2004), genetic drift, and barriers to gene flow
(Briggs and Walters 2001). Consequently, identifying the
principal cause driving trait variation is challenging, since
multiple processes may produce similar outcomes.
A standard way of unraveling these multiple hypotheses
is to compare patterns of quantitative trait variation with
neutral genetic variation (Spitze 1993; Merila and Crno-
krak 2001; Whitlock 2008; Edelaar and Bjorklund 2011).
The genetic basis of variation in quantitative traits can be
C. L. Gormally � J. L. Hamrick � L. A. Donovan
Department of Plant Biology, University of Georgia,
2502 Miller Plant Sciences, 30602 Athens, Georgia
C. L. Gormally (&)
School of Biology, Georgia Institute of Technology,
310 Ferst Drive, 30332 Atlanta, Georgia
e-mail: [email protected]
123
Conserv Genet (2013) 14:185–193
DOI 10.1007/s10592-012-0441-z
assessed using common garden experiments under condi-
tions that minimize environmentally-induced trait varia-
tion. Neutral genetic variation can be measured with
genetic markers (Merila and Crnokrak 2001) and, Wright’s
FST can be used to examine the distribution of neutral
genetic variation among populations (Wright 1965). A
similar measure for quantitative traits, QST, can be directly
compared to FST (Spitze 1993). Variation among popula-
tions for neutral markers (FST) results from drift, mutation,
and gene flow, but not selection. In contrast, variation
among populations for quantitative traits (QST) is poten-
tially due to all evolutionary factors, including selection
(Workman and Niswander 1970; McKay and Latta 2002).
There are three possible outcomes resulting from the
comparison of the two analyses (Merila and Crnokrak
2001):
(1) If QST is not significantly different from FST, trait
differentiation is due to genetic drift and gene flow;
(2) If QST is significantly greater than FST, selection on
the trait is divergent across the sampled range of
populations;
(3) If QST is significantly less than FST, selection is
uniform across the sampled range of populations.
Coastal dunes are spatially and temporally heterogeneous
habitats. Along a localized environmental gradient spanning
the dynamic embryonic foredunes to the more stabilized
dunes situated further inland, environmental conditions can
differ at distances as small as 0.5 m. This may drive changes
in plant community composition and species’ distributions
(Cowles 1899; Oosting and Billings 1942; Boyce 1954;
Wagner 1964; Doing 1985; Barbour et al. 1999; Maun and
Perumal 1999; Smith and Smith 2001). Additionally, dunes
are often detrimentally impacted by human activities,
including dune destruction due to construction, changes in
on- and off-shore sand movement due to hard protection
structures (e.g. jetties, seawalls, groins), changes in plant
species distributions resulting from human trampling, and
changes to dune form and plant community composition as a
result of planting exotics, ostensibly to stabilize dunes
(Wiedemann and Pickart 1996; Acosta et al. 2000; Davis
and Fitzgerald 2004). Since coastal dunes are dynamic and
frequently disturbed, understanding the underlying genetic
responses to heterogeneous environmental factors may
inform management strategies for the long-term persistence
of these populations (Lynch 1996; Franks 2009).
We estimated neutral genetic variation using allozymes
and examined trait variation in Uniola paniculata L. (Poa-
ceae), a dominant perennial coastal dune grass on primary
dunes. Uniola paniculata is legally protected because it sta-
bilizes dune habitats and is frequently used in dune restoration
projects. Its natural history as a rhizomatous perennial grass
capable of both sexual and clonal reproduction makes it
representative of many dune plant species (Duncan and
Duncan 1987). Uniola paniculata ranges from Virginia to the
Bahamas along the southeastern Atlantic coast and along the
Gulf coast to Veracruz, Mexico; across one dune system, its
habitat spans a localized environmental gradient from fored-
unes to dunes situated farther inland (Wagner 1964). At
geographic scales, there are only weak regional patterns of
genetic structure among populations of U. paniculata (Franks
et al. 2004; Subudhi et al. 2005).
We designed this study expecting that divergent selec-
tion pressures along the shoreline-to-landward environ-
mental gradient would be responsible for documented
patterns of phenotypic variation among populations that
corresponded with the underlying habitat variation along
the dune gradient (Gormally and Donovan 2010). In a
reciprocal transplant experiment, we found no support of
local adaptation to dune microhabitats, but that test for
local adaptation was compromised by the loss of foredune
plots to storms prior to harvest (Gormally and Donovan
2011). Other research findings suggested that localized
microhabitat differences might drive trait variation among
U. paniculata populations, as fine-scale clonal structure
and diversity have been shown to vary widely even within
relatively small areas (Franks et al. 2004; Bush and Stelato
2007). Here, comparative studies of quantitative genetic
trait variation and neutral allozyme variation, considered in
light of these previous results, are used to determine
whether phenotypic trait variation among U. paniculata
populations is due to phenotypic plasticity, divergent
selection, or genetic drift.
Materials and methods
Seed collection and study sites
Our study focused on four barrier islands on the Georgia
coast: Cabretta, Nannygoat Beach on Sapelo Island, Sea
Island, and Jekyll Island (Table 1). Cabretta, the northern-
most island, is located approximately 0.3 km north of
Sapelo Island, which is located about 18 km north of Sea
Island. Sea Island is located about 2 km north of Jekyll
Island. Sapelo is the largest of the four islands at nearly
6,900 ha, spanning approximately 17 km in length and
4 km at its widest point. Cabretta and Sea Island were
formed 4,000–5,000 years ago during the Holocene with
the rise of sea level following the last glacial maximum.
The Sapelo and Jekyll beaches sampled were also formed
during the Holocene, although other parts of these islands
were formed during the Pleistocene (35,000–40,000 years
ago, before the last glacial maximum).
In November 2006, we collected panicles from two
populations, dynamic foredunes and stabilized backdunes on
186 Conserv Genet (2013) 14:185–193
123
each of the four islands. Foredune populations were defined
as plants growing in the 10 m closest to the shoreline and
backdune populations were defined as the farthest inland
edge of the species’ range, based on previous characteriza-
tion of this species’ habitat (Gormally and Donovan 2010,
2011). In each population, panicles were collected from 20
individuals located at least 3 m apart to increase the likeli-
hood that seeds from unique genetic individuals were sam-
pled following the protocol from Franks et al. (2004). Seeds
were stored at room temperature prior to use.
Common garden experiment
From our field collection, we planned a randomized com-
plete block design. Since many panicles contained few or no
seeds, several populations represented in the study contain
fewer families and individuals within families (Table 1). In
January 2008, 1,624 seeds were removed from panicles,
scarified by nicking the seed coat with a razor blade, and
germinated in Petri dishes in a growth chamber (95 �F for
7 h/65 �F for 17 h), following the protocol described by
Seneca (1972). Germination rates ranged from 38 to 57 %
by population, with 47 % of all seeds germinating. Low seed
production and low germination rates are typical for this
species (Wagner 1964; Seneca 1972). Seedlings were
transplanted into 2.5 9 10 inches (40 inch3 capacity) Dee-
pots (Steuwe and Sons) and grown under ambient conditions
in the University of Georgia Plant Biology greenhouses.
We measured 10 quantitative traits. Since U. paniculata is
a grass, we were limited in our choice of quantitative traits.
We chose traits expected to be ecologically important to the
species, and which might affect plant success depending on
variation in localized abiotic conditions, e.g., sand burial.
These traits, describing plant morphology and phenology,
were measured either during plant growth or at harvest in
November 2008. Plant traits measured during growth inclu-
ded time to germination (days), seedling height (cm), which
was measured in March 2008, and adult stem diameter (mm),
which was measured in May 2008. At harvest in November
2008, we measured average root diameter (mm) of the three
largest roots, number of ramets, number of rhizomes, and
number of roots. We then dried the harvested plants to
constant weight, and measured aboveground biomass (g),
belowground biomass (g), and total biomass (g). Because U.
paniculata reproduces both sexually and clonally, we mea-
sured number of ramets, since reproductive strategy might
differ by habitat. We measured biomass partitioning (above-
and below-ground biomass; number of ramets and number of
rhizomes) because dune species tend to respond to sand
burial by increasing size through shifts in resource allocation
(e.g., shifting resources from roots to aboveground biomass)
(Zhang and Maun 1992; Martinez and Moreno-Casasola
1996; Brown 1997; Perumal and Maun 2006).
Allozyme gel electrophoresis
A total of 117 seedlings were crushed for protein extraction
using liquid nitrogen, sea sand, and the extraction buffer of
Wendel and Parks (1982): 53 from backdune populations
and 64 from foredune populations. Sample sizes were
limited as many panicles contained few or no seeds and
germination rates tended to be low. Extracted proteins were
run on 9.5 % starch gels and fourteen enzymes were
examined: aspartate amino transferase (Aat), diaphorase
(Dia), glutamate dehydrogenase (Gdh), malic enzyme
(Me), and triose-phosphate isomerase (Tpi) on buffer sys-
tem 8-; menadione reductase (Mnr), phosphoglucoisomer-
ase (Pgi), and phosphoglucomutase (Pgm) on buffer system
6; 6-phosphogluconate dehydrogenase (Pgd), F-1,6-
diphosphate (F1,6), and malate dehydrogenase (Mdh) on
buffer system 4; and adenylate kinase (Ak), isocitrate
dehydrogenase (Idh), and shikimate dehydrogenase (Skdh)
on buffer system 11 (Soltis et al. (1983) for all buffers and
stains except: Aat, Ak, Dia, and Mnr (Cheliak and Pitel
1984). Following the established protocols cited above,
gels were stained with enzyme-specific stains and scored
for allozyme banding patterns, with interpretation guided
by Wendel and Weeden (1989) and Kephart (1990).
Statistical analyses
For each quantitative trait, variance components were used
to estimate QST following Spitze (1993), i.e., QST = rb2/
(2rw2 ? rb
2) The population variance component was used
Table 1 Populations sampled are presented with their GPS coordinates and number of individuals sampled, including the number of half-sibling
families sampled in parentheses
Island Population abbreviation Latitude Longitude N (families)
Backdune Foredune
Cabretta Island Cab B/Cab F 31�250 81�140 189 (17) 194 (20)
Nannygoat Beach, Sapelo Island Sap B/Sap F 31�230 81�150 200 (18) 201 (16)
Sea Island Sea B/Sea F 31�100 81�200 209 (16) 203 (17)
Jekyll Island Jek B/Jek F 31�040 81�240 197 (18) 231 (18)
Conserv Genet (2013) 14:185–193 187
123
as the estimate of among population variance (rb2) and four
times the family within-population variance component
was used as the estimate of within-population variance
(rw2 ) to account for the half-sibling (i.e., open pollinated)
design (Lynch and Walsh 1998). For diploids, genetic
variation among populations is proportional to two times
FST, thus the ‘‘2’’ in the denominator. For each quantitative
trait, variance was partitioned into among population,
among families within populations, and error components
(PROC MIXED, SAS 9.2, Cary, NC). For each QST value,
its standard error was estimated as the standard deviation of
QST estimates calculated from 1,000 iterations boot-
strapped over all samples. The model structure described
above was used to test three comparisons: (1) comparison
of individual populations, accounting for both island and
habitat type (n = 8 populations); (2) comparison of
foredune and backdune habitats, with populations pooled
across islands (n = 2 populations); and (3) comparison of
islands, with populations pooled across habitats within
each island (n = 4 populations). We present the results of
the latter two comparisons to explicate our primary find-
ings from the comparison of individual populations, with
the caveat that the latter two models may have resulted in
artificially inflated or deflated estimates, depending upon
the manner in which populations were pooled.
For each quantitative trait, narrow-sense heritabilities (hn2)
were estimated for each population using family and residual
variance components from a separate random model
following Falconer and Mackay (1996), i.e., hn2 = 4rhs
2 /
(rhs2 ? re
2) (PROC MIXED, SAS 9.2, Cary, NC). To account
for the half-sibling design, hn2 was calculated as four times the
within family variance component divided by the sum of the
family and residual variance components (Falconer and
Mackay 1996).
FST was calculated following Wright (1965) with the
program GDA (Weir 1996; Lewis and Zaykin 2001) and
bootstrapped confidence intervals were estimated over
1,000 iterations, to account for sampling error, as recom-
mended by Whitlock (2008). Values of FST were calculated
to test three comparisons: (1) comparison of individual
populations, accounting for both island and habitat type
(n = 8 populations); (2) comparison among foredune and
backdune habitats, with populations pooled across islands
(n = 2 populations); and (3) comparison of islands, with
populations pooled across habitats within each island
(n = 4 populations).
The following genetic diversity parameters were esti-
mated for each locus and for the three comparisons of
populations described above, as well as pooled across all
populations, using the program GDA (Lewis and Zaykin
2001): percentage of polymorphic loci (P), mean number
of alleles per locus (A), mean number of alleles per poly-
morphic locus (Ap), and observed (Ho) and expected
heterozygosity (He). Subscript p and s are used to designate
population-level and pooled effects, respectively.
Whitlock (2008) suggests that in addition to the standard
comparison of the average FST value to QST values for
particular traits, QST values may be compared to the fre-
quency distributions of FST across all loci to infer if popu-
lation differentiation in quantitative variation differs from
neutral expectations (and see Eroukhmanoff et al. 2009). We
could not utilize this approach because we had fewer than
the recommended number of loci (N [ 50) (Whitlock
2008). However, the distribution of FST is fairly well pre-
dicted by the mean value of FST when values are less than
0.1 (Whitlock 2008). Our calculated FST value fell below
0.1, indicating that using the mean FST to compare to spe-
cific QST values is reasonable for evaluating causes of trait
differentiation. We compared the mean FST to specific QST
values, determining significant differences by non-overlap-
ping bootstrapped error bars.
Since the sample sizes of the Cabretta populations
included in our allozyme study were quite small, we cal-
culated FST and genetic diversity parameters both with and
without the CAB populations. The inclusion of the CAB
populations produced little difference in calculated FST
values (0.035 excluding CAB populations versus 0.032
including CAB populations) so we chose to include these
populations.
Results
These eight populations maintained relatively high levels of
allozyme variation. Sixteen of the 23 allozyme loci analyzed
were polymorphic in multiple populations (Table 2a–c). The
most variable loci were Pgm-1 and Tpi-3, with 4 and 3
alleles each, respectively. For the 16 polymorphic loci, a
total of 35 alleles were found among the individuals sam-
pled. Seven loci (Aat, Ak-1, F16, Mdh-1, Pgi-2, Pgi-3, and
Skdh) were monomorphic in all populations. Across pooled
populations, there was an average of 2.23 alleles per poly-
morphic locus (APs) and genetic diversity (Hes) was esti-
mated to be 0.158 (Table 2a). Within populations there was
an average of 2.06 alleles per polymorphic locus (APp) and
mean genetic diversity (Hep) was estimated to be 0.147
(Table 2a).
There were also moderate levels of additive genetic
variation within these populations. Trait heritabilities ran-
ged from 0.114 for number of ramets, to 0.393 for time to
germination (Table 3). The estimate of heritability for
number of ramets in the Sapelo backdune population was
excluded because it was greater than 1.0, which is theo-
retically impossible. By utilizing results from Franks et al.
(2004) to inform our sampling strategy for seed collection,
we had hoped to avoid collecting seeds from ramets
188 Conserv Genet (2013) 14:185–193
123
belonging to the same clone. However, if clonality occur-
red on a larger scale than expected, inadvertent sampling
within genets may have occurred. The estimate of herita-
bility for number of ramets in the Sapelo backdune popu-
lation was less than 1 when estimated using a full-sibling
design, indicating perhaps that significant genetic related-
ness among maternal plants may have existed.
The values of QST varied greatly among the 10 traits that
were measured. Estimates of QST varied from 0.005 for
time to germination to 0.116 for aboveground biomass at
harvest, with a mean QST of 0.055 (Fig. 1a; Table 3). FST
was estimated to be 0.032 among all eight populations. FST
values for differences among islands and between habitats
within islands were 0.026 and 0.005, respectively. The QST
values for all traits, except two (above ground biomass and
total biomass), fell within the confidence intervals of the
estimated mean value of FST for the comparison among all
populations (Fig. 1a). For the habitat comparison (foredune
versus backdune), only the QST for mean root diameter was
significantly higher than the mean FST (Fig. 1b). For the
among island comparisons, the number of roots, above-
ground biomass, and total biomass are significantly dif-
ferent from the mean FST (Fig. 1c). Consequently, results
from the comparisons of islands and habitats indicate that
selection among populations likely differs due to differ-
ences among islands, rather than due to variation in abiotic
conditions along the localized environmental gradient
(Fig. 1).
Discussion
Many comparisons of quantitative genetic variation and
neutral marker variation report QST values that far exceed FST
(Merila and Crnokrak 2001; Leinonen et al. 2008). This is
interpreted as divergent selection resulting in different opti-
mal phenotypes for populations in different habitats. We
expected to find evidence for divergent selection to be stron-
gest among habitats within islands, i.e. across the shoreline-to-
landward environmental gradient, based on previous results
for U. paniculata (Franks et al. 2004; Bush and Stelato 2007;
Gormally and Donovan 2010; Gormally and Donovan 2011)
as well as given the general expectation of adaptive differ-
entiation across environmental gradients (McKay et al. 2005).
However, our analyses indicated that differentiation was
greater among populations located on different islands
(number of roots, aboveground biomass, and total biomass;
Fig. 1c) than among populations located across the shoreline-
to-landward environmental gradient on the primary dunes
(mean root diameter; Fig. 1b). Finally, in our comparison of
all eight populations, we found evidence of divergent selec-
tion for only 2 of the 10 traits measured: aboveground biomass
and total biomass, traits that are most likely correlated.
For the majority of traits, QST values were not signifi-
cantly different from FST, indicating similar structuring of
quantitative trait variation and neutral genetic variation
among populations. For these traits, there is no evidence to
suggest that divergent selection plays a stronger role in
shaping differences among populations than genetic drift.
Our findings of similar values of FST and QST for many traits
and low amounts of among-population genetic structure are
consistent with results for other plant species with geo-
graphically or ecologically narrow distributions (Waldmann
and Andersson 1998; Widen et al. 2002; Jorgensen et al.
2006; Badri et al. 2008; Helsen et al. 2009). Species with life
history traits similar to U. paniculata have GST values
similar to our FST estimate, e.g., long-lived outcrossing
perennials (0.094) and long-lived perennials with wind-dis-
persed seeds (0.086) (Hamrick and Godt 1996). Our FST
estimate is lower than allozyme-based estimates of GST for
Poaceae (0.284) (Hamrick and Godt 1996) and for other
outcrossing grasses (0.112) (Godt and Hamrick 1998), as
Table 2 Genetic diversity parameters derived from 23 allozyme loci
in U. paniculata presented for each model comparison as described in
the ‘‘Materials and methods’’ (a) island and habitat comparison,
(b) habitat comparison, (c) island comparison
Population N Pp (%) Ap APp Hep Hop
(a)Island and habitat comparison
CabB 2 30.4 1.30 2.00 0.188 0.261
CabF 8 47.8 1.48 2.00 0.143 0.174
JekB 13 56.5 1.61 2.08 0.179 0.197
JekF 22 56.5 1.61 2.08 0.169 0.184
SapB 20 47.8 1.52 2.09 0.152 0.196
SapF 10 39.1 1.44 2.11 0.132 0.204
SeaB 18 43.5 1.44 2.00 0.163 0.225
SeaF 24 39.1 1.44 2.11 0.137 0.199
Mean 14.63 45.1 1.48 2.06 0.147 0.205
Pooled 117 56.5 1.83 2.23 0.158 0.199
(b) Habitat comparison
Backdune 53 56.5 1.74 2.154 0.163 0.208
Foredune 64 56.5 1.74 2.231 0.153 0.192
Mean 117 56.5 1.74 2.192 0.158 0.200
(c) Island comparison
Cab 10 47.8 1.52 2.091 0.147 0.191
Jek 35 65.2 1.74 2.133 0.175 0.189
Sap 29 47.8 1.52 2.091 0.144 0.198
Sea 43 47.8 1.57 2.182 0.149 0.210
Mean 117 52.2 1.59 2.124 0.154 0.197
Sample size (N), percentage of polymorphic loci (Pp), number of
alleles per locus (Ap), mean number of alleles per polymorphic locus
(APp), expected heterozygosity (Hep) and observed heterozygosity
(Hop) are presented
Conserv Genet (2013) 14:185–193 189
123
well as estimates for U. paniculata reported by Franks et al.
(2004). However, Franks et al. (2004) sampled populations
across the species’ geographic range, as did an AFLP-based
survey which reported higher levels of genetic diversity
(Subudhi et al. 2005). Our FST estimate is probably lower, in
part, due to the limited geographic area that was sampled
(i.e., higher potential rates of gene flow). Our genetic
diversity parameter measurements, including Pp, and Hop,
are similar to those reported by Franks et al. (2004). How-
ever, Hop was always greater than Hep in our surveyed
populations, while Franks et al. (2004) reported equal mean
values of Hop and Hep, though measures of Hop exceeded Hep
in some populations (including the Sapelo Island popula-
tion). Observations of excess heterozygosity in populations
of perennial plants are relatively commonplace (Mitton
1997) and there is also some indication that heterozygotes
are favored in heterogeneous environments (Mitton 1997).
Our data, however, are not sufficient to demonstrate whether
this explanation is applicable to the observed excesses of
heterozygosity in the populations sampled in this study. The
lack of evidence for intra-island divergent selection (fored-
une vs. backdune populations) for nine of the ten traits
measured suggests that previously observed phenotypic
variation across the shoreline-to-landward environmental
dune gradient likely results from phenotypic plasticity
(Gormally and Donovan 2010). Because U. paniculata is a
relatively long-lived perennial clonal grass, an individual
genotype may experience and respond to the entire spectrum
of environmental gradient conditions as dunes build and
erode over its lifetime. The ability to respond plastically to
temporal environmental heterogeneity likely has been a
favorable strategy contributing to the long-term persistence
of these populations (Schlichting and Pigliucci 1998).
In addition to plasticity, sufficient genetic variation
affects the ability of populations to evolve in response to
environmental change (Frankham et al. 2002; Jump et al.
2008; Kramer and Havens 2009). This may be particularly
important for U. paniculata because it is expected to
experience further fragmentation and reduced population
size due to man-made disturbances. Our measures of her-
itability indicate that these populations have the genetic
capacity to respond to changes in environmental condi-
tions. It should be noted that our heritability estimates may
include non-additive genetic components such as environ-
mental maternal effects, since plants used in this study
were grown from field-collected seeds. Additionally, the
Fig. 1 Point estimates and bootstrapped 95 % confidence intervals for
quantitative traits measured and estimated FST. The values represent
the proportion of total heritable variance that is partitioned among
populations. The solid line indicates the estimated value of FST. The
dashed lines indicate the upper and lower bounds of the confidence
interval around the estimated value of FST. a–c Values estimated for
each model as described in the ‘‘Materials and methods’’
b
190 Conserv Genet (2013) 14:185–193
123
paternity of our field-collected seeds is unknown, so it is
possible that some families contain a mixture of half and
full siblings, resulting in both heritability and QST values
that do not reflect expected genetic relatedness.
In recent years, questions have been raised about the
QST–FST comparison (Miller et al. 2008; Pujol et al. 2008;
Santure and Wang 2009). Assumptions of FST and QST
under neutrality have been called into question (Miller et al.
2008), and inbreeding and dominance have been shown, in
theory, to affect the comparison (Santure and Wang 2009).
Our study utilized neutral markers, allozymes, rather than
hypervariable genetic markers such as microsatellites, so as
to not impact the validity of the comparison of FST and QST
(Edelaar and Bjorklund 2011; Edelaar et al. 2011). Further,
we utilized a common garden in our research design, so that
the comparison did not confound additive genetic diver-
gence among populations with environmental effects (Pujol
et al. 2008). In particular, questions have been raised con-
cerning the ability to not only compare mean estimates of
each parameter, but to compare the parameters’ distributions
themselves, particularly for FST values C0.1 (Whitlock
2008). While the number of loci sampled (N = 23) pre-
vented us from using this approach, our FST value is B0.1
(FST = 0.032). We also used 95 % confidence intervals
which are more conservative tests of significance than dif-
ference testing at a = 0.05, since there are methodological
difficulties with the construction of confidence intervals on
variance component ratios for QST which are still under
development and debate (Bonnin et al. 1996; O’Hara and
Merila 2005; Whitlock 2008). Though there are valid con-
cerns about QST–FST comparisons, it remains a valuable
technique for making evolutionary inferences concerning
which traits are undergoing divergent selection.
The spatial scale of genetic differentiation among popula-
tions can inform restoration decisions by suggesting whether
sourcing transplants locally is important for restoration success
(Frankham et al. 2002; McKay et al. 2005). Genotype-envi-
ronment matching, resulting from local adaptation or historical
genetic structure, can profoundly influence the success of some
restoration efforts (Rice et al. 1997). However, recent work
highlights several benefits of genetic translocation, including
alleviating threats of population extinction and inbreeding
resulting from small population size, spurring the probability
of adaptation in the context of climate change (Sgro et al.
2011), and introducing individuals that are not locally sourced
but are genetically diverse to increase long-term adaptive
potential for restored populations (Broadhurst et al. 2008). Our
findings, combined with results from prior studies, suggest that
that U. paniculata individuals are successful across the range
of environmental conditions occurring across a single dune
system (Gormally and Donovan 2010; Gormally and Donovan
2011). This is promising, since coastal dunes undergoing res-
toration often experience substantial habitat loss of the shore-
line-to-landward environmental gradient due to beach erosion
or subsidence (Feagin et al. 2005).
Since natural selection appears to be divergent amongst
closely neighboring islands, conservation efforts should use
care in seed or ramet sourcing for populations located on
different dune systems. While the populations analyzed were
all from Holocene beaches with similar geomorphologies,
there may be considerable inter-island variation in dune
topography and the frequency and extent of beach and dune
erosion. These differences may result from island orientation
relative to prevailing winds, affecting overwash patterns and
sand accretion and erosion, as well as local beach and dune
sediment budgets (Stallins and Parker 2003). Differences in
quantitative traits, particularly the ones documented here—
aboveground biomass and total biomass—may impact the
successful translocation of individuals from one environ-
ment to another (Frankham et al. 2002). To address inter-
island genotype translocation, an important next step
would be to conduct inter-island reciprocal transplants of
Table 3 Traits measured
Trait N hn2 rb
2 rw2 QST U L
Time to germination 761 0.393 (0.410) 0.03752 4.144 0.004507 0.014 -0.005
Seedling height 668 0.214 (0.452) 0.18 0.9104 0.089964 0.117 0.063
Adult stem diameter 643 0.150 (0.431) 0.000054 0.0044 0.006039 0.016 -0.004
Number of ramets 644 0.114 (0.445) 0.1164 0.9592 0.057205 0.077 0.037
Number of rhizomes 644 0.249 (0.535) 0.000822 0.0326 0.012462 0.026 -0.001
Number of roots 644 0.359 (0.535) 4.4136 25.5244 0.079578 0.108 0.051
Root diameter 642 0.153 (0.493) 0.000435 0.00586 0.035788 0.050 0.021
Aboveground biomass 643 0.200 (0.541) 1.1652 4.4484 0.115802 0.138 0.093
Belowground biomass 643 0.166 (0.566) 0.04568 0.4304 0.050393 0.069 0.032
Total biomass 643 0.200 (0.541) 1.4893 6.5832 0.101619 0.122 0.082
Sample size (N), mean narrow-sense heritabilities (hn2) and standard errors in parentheses, among-(rb
2) and within-(rw2 ) population variances, and
QST values, with upper (U) land lower (L) limits of the bootstrap 95 % confidence intervals for the QST statistics are presented
Conserv Genet (2013) 14:185–193 191
123
populations to understand whether divergent selection
among populations drives local adaptation, as well as to
determine the environmental conditions associated with
selection favoring certain phenotypes. Together, compara-
tive studies of neutral genetic variation and quantitative trait
variation help to reveal the complex interactions occurring
within and among populations and provide genetic infor-
mation that can be used to guide plant restoration efforts.
Acknowledgments The authors wish to thank Scott Gevaert for
assistance with seed collections and critical feedback for early drafts
of this manuscript, Cecile Deen for assistance with allozymes, Beau
Brouillette for assistance with statistical analyses, and the University
of Georgia Plant Biology Greenhouse staff for assistance in germi-
nating and keeping the plants alive. Research at the Sapelo Island
National Estuarine Research Reserve (SINERR) was facilitated by the
research reserve coordinator, Dorset Hurley. Tom Patrick at the
Georgia Department of Natural Resources Wildlife Resources Center
provided invaluable help in the permitting process for seed collection.
We thank the National Estuarine Research Reserve System (National
Oceanic and Atmospheric Administration) for a graduate fellowship
that supported this work (NAO7NOS42-00039), as well as the
Georgia Sea Grant College Program (NA04OAR4170033) and the
Georgia Botanical Society for financial support. This is contribution
number 993 from the University of Georgia Marine Institute.
References
Acosta A, Blasi C, Stanisci A (2000) Spatial connectivity and
boundary processes in coastal dune vegetation in the Circeo
National Park, Central Italy. J Veg Sci 11:149–154
Badri M, Zitoun A, Soula S, Ilahi H, Huguet T, Aouani ME (2008) Low
levels of quantitative and molecular genetic differentiation among
natural populations of Medicago ciliaris Kroch. (Fabaceae)
of different Tunisian eco-graphical origin. Conserv Genet 9:
1509–1520
Barbour MG, Burk JH et al (1999) Terrestrial plant ecology.
Benjamin Cummings, Menlo Park
Batista F, Bouza N, Gonzalez-Perez MA, Caujape-Castells J, Sosa PA
(2004) Genetic variation within and between populations of two
endangered endemic species of the laurel forest from the Canary
Islands, Myrica rivas-martinezii (Myricaceae) and Sideritisdiscolor (Lamiaceae). Aust J Bot 52:471–480
Bonnin I, Prosperi JM, Olivieri I (1996) Genetic markers and
quantitative genetic variation in Medicago truncatula (Legumi-
nosae): a comparative analysis of population structure. Genetics
143:1795–1805
Boyce SG (1954) The salt spray community. Ecol Monogr 24(1):
29–67
Briggs D, Walters SM (2001) Plant variation and evolution, 3rd edn.
Cambridge University Press, New York
Broadhurst LM, Lowe A, Coates DJ, Cunningham SA, McDonald M,
Vesk PA, Yates C (2008) Seed supply for broadscale restoration:
maximizing evolutionary potential. Evol Appl 1:587–597
Brown JF (1997) Effects of experimental burial on survival, growth,
and resource allocation of three species of dune plants. J Ecol
85:151–158
Bush SP, Stelato ME (2007) Clonal diversity in differently aged
patches of the dune grass Uniola paniculata. Southeast Nat 6(2):
359–364
Cheliak WH, Pitel JA (1984) Techniques for starch gel electropho-
resis of enzymes from forest tree species. Petawawa National
Forestry Institute, Ontario
Clausen JD, Keck D, Heisey WM (1948) Experimental studies on the
nature of species. III. Environmental responses of climatic races
of Achillea. Carnegie Institution of Washington Publication 520
Cowles HC (1899) The ecological relations of the vegetation of the
sand dunes of Lake Michigan. Bot Gaz 27:95–391
Davis RA Jr, Fitzgerald DM (2004) Beaches and coasts. Blackwell,
Malden
Doing H (1985) Coastal fore-dune zonation and succession in various
parts of the world. Vegetatio 61(1):65–75
Duncan WH, Duncan MB (1987) The Smithsonian guide to seaside
plants of the Gulf and Atlantic coasts. Smithsonian Press,
Washington
Edelaar P, Bjorklund M (2011) If FST does not measure neutral
genetic differentiation, then comparing it with QST is misleading.
Or is it? Mol Ecol 20(9):1805–1812
Edelaar P, Burraco P, Gomez-Mestre I (2011) Comparisons between
QST and FST: how wrong have we been? Mol Ecol 20(23):
4830–4839
Eroukhmanoff E, Hargeby A, Svensson EI (2009) Rapid adaptive
divergence between ecotypes of an aquatic isopod inferred from
FST–QST analysis. Mol Ecol 18:4912–4923
Falconer DS, Mackay TFC (1996) Introduction to quantitative
genetics. Prentice Hall, New York
Feagin RA, Sherman DJ, Grant WE (2005) Coastal erosion, global
sea-level rise, and the loss of sand dune plant habitats. Front Ecol
Environ 3(7):359–364
Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conser-
vation genetics. Cambridge University Press, New York
Franks SJ (2009) Genetics, evolution, and conservation of island
plants. J Plant Biol 53:1–9
Franks SJ, Richards CL, Gonzales E, Cousins JE, Hamrick JL (2004)
Multi-scale genetic analysis of Uniola paniculata (Poaceae): a
coastal species with a linear, fragmented distribution. Am J Bot
91:1345–1351
Godt MJW, Hamrick JL (1998) Allozyme diversity in the grasses. In:
Cheplick GP (ed) Population biology of the grasses. Cambridge
University Press, Cambridge, pp 11–29
Gormally CL, Donovan LA (2010) Responses of Uniola paniculataL. (Poaceae), an essential dune-building grass, to complex
changing environmental gradients on the coastal dunes. Estuar
Coasts 33(5):1237
Gormally CL, Donovan LA (2011) No evidence of local adaptation in
Uniola paniculata. Southeast Nat 10(4):751–760
Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic
diversity in plant species. Philos Trans Royal Soc Lond B 351:
1291–1298
Helsen P, Verdyck P, Tye A, Van Dongen S (2009) Low levels of
genetic differentiation between Opuntia echios varieties on
Santa Cruz (Galapagos). Plant Syst Evol 279:1–10
Hereford J (2009) A quantitative survey of local adaptation and
fitness trade-offs. Am Nat 173(5):579–588
Jorgensen TH, Richardson DS, Andersson S (2006) Comparative
analyses of population structure in two subspecies of Nigelladegenii: evidence for diversifying selection on pollen-color
dimorphisms. Evolution 60(3):518–528
Jump AS, Marchant R, Penuelas J (2008) Environmental change and the
option value of genetic diversity. Trends Plant Sci 14(1):51–58
Kephart SR (1990) Starch gel electrophoresis of plant isozymes: a
comparative analysis of techniques. Am J Bot 77(5):693–712
Kramer AT, Havens K (2009) Plant conservation genetics in a
changing world. Trends Plant Sci 14(11):599–607
192 Conserv Genet (2013) 14:185–193
123
Leinonen T, O’Hara RB, Cano JM, Merila J (2008) Comparative
studies of quantitative trait and neutral marker divergence: a
meta-analysis. J Evol Biol 21:1–17
Lewis PO, Zaykin D (2001) Genetic data analysis: computer program
for the analysis of allelic data. Version 1.0 (d16c). Free program
distributed by the authors over the internet from http://lewis.eeb.
uconn.edu/lewishome/software.html
Lynch M (1996) A quantitative-genetic perspective on conservation
issues. In: Avise JC, Hamrick JL (eds) Conservation genetics:
case histories from nature. Chapman and Hall, New York,
pp 471–501
Lynch M, Walsh B (1998) Genetics and analysis of quantitative traits,
2nd edn. Sinauer Associates Inc., Sunderland
Martinez ML, Moreno-Casasola P (1996) Effects of burial by sand on
seedling growth and survival in six tropical sand dune species
from the Gulf of Mexico. J Coastal Res 12(2):406–419
Maun MA, Perumal J (1999) Zonation of vegetation on lacustrine
coastal dunes: effects of burial by sand. Ecol Lett 2:14–18
McKay JK, Latta RG (2002) Adaptive population divergence: markers,
QTL and traits. Trends Ecol Evol 17:285–291
McKay JK, Christian CE, Harrison S, Rice KJ (2005) How local is
local? A review of practical and conceptual issues in the genetics
of restoration. Restor Ecol 13:432–440
Merila J, Crnokrak P (2001) Comparison of genetic differentiation at
marker loci and quantitative traits. J Evol Biol 14:892–903
Miller JR, Wood BP, Hamilton MB (2008) FST and QST under
neutrality. Genetics 180:1023–1037
Mitton JB (1997) Selection in natural populations. Oxford University
Press, New York
O’Hara RB, Merila J (2005) Bias and precision in QST estimates:
problems and some solutions. Genetics 171:1331–1339
Oosting HJ, Billings WD (1942) Factors affecting vegetational
zonation on coastal dunes. Ecology 23:131–142
Perumal VJ, Maun MA (2006) Ecophysiological response of dune
species to experimental burial under field and controlled
conditions. Plant Ecol 184:89–104
Pujol B, Wilson AJ, Ross RIC, Pannell JR (2008) Are QST–FST
comparisons for natural populations meaningful? Mol Ecol 17:
4782–4785
Rice SLW, Montalvo AM, Buchmann SL, Cory C, Handel SN,
Nabhan GP, Robichaux RH (1997) Restoration biology: a
population biology perspective. Restor Ecol 5:277–290
Santure AW, Wang J (2009) The joint effects of selection and
dominance on the QST–FST contrast. Genetics 181:259–276
Schlichting CD, Pigliucci M (1998) Phenotypic evolution: a reaction
norm perspective. Sinauer Associates Inc., Sunderland
Seneca ED (1972) Germination and seedling response of Atlantic and
Gulf coast populations of Uniola paniculata. Am J Bot 59(3):
290–296
Sgro CM, Lowe AJ, Hoffmann AA (2011) Building evolutionary
resilience for conserving biodiversity under climate change. Evol
Appl 4:326–337
Smith RL, Smith TM (eds) (2001) Ecology and field biology.
Benjamin Cummings, New York
Soltis DE, Haufler CH, Darrow DC, Gastony GJ (1983) Starch gel
electrophoresis of ferns: a compilation of grinding buffer, gel,
and electrode buffers, and staining schedules. Am Fern J 73:9–27
Spitze K (1993) Population structure in Daphnia obtusa: quantitative
genetic and allozymic variation. Genetics 135:367–374
Stallins JA, Parker AJ (2003) The influence of complex systems
interactions on barrier island dune vegetation pattern and process.
Ann Assoc Am Geogr 93(1):13–29
Subudhi PK, Parami NP, Harrison SA, Materne MD, Murphy JP, Nash
D (2005) An AFLP-based survey of genetic diversity among
accessions of sea oats (Uniola paniculata, Poaceae) from the
southeastern Atlantic and Gulf coast states of the United States.
Theor Appl Genet 111:1632–1641
Turesson G (1922) The genotypical response of the plant species to
habitat. Hereditas 3:211–350
Via S, Lande R (1985) Genotype-environment interaction and the
evolution of phenotypic plasticity. Evolution 39(3):505–522
Wagner RH (1964) The ecology of Uniola paniculata L. in the dune-
strand habitat of North Carolina. Ecol Monogr 34:79–96
Waldmann P, Andersson S (1998) Comparison of quantitative genetic
variation and allozyme diversity within and between populations
of Scabiosa canescens and S. columbaria. Heredity 81:79–86
Weir BS (1996) Genetic data analysis II. Sinauer Associates Inc.,
Sunderland
Wendel JF, Parks CR (1982) Genetic control of isozyme variation in
Camellia japonica L. J Hered 73(3):197–204
Wendel JF, Weeden NF (1989) Visualization and interpretation of
plant isozymes. In: Soltis DE (ed) Isozymes in plant biology.
Dioscorides Press, Portland
Whitlock MC (2008) Evolutionary inference from QST. Mol Ecol
17:1885–1896
Widen BS, Andersson G, Rao Y, Widen M (2002) Population
divergence of genetic (co)variance matrices in a subdivided plant
species, Brassica cretica. J Evol Biol 15:961–970
Wiedemann AM, Pickart A (1996) The Ammophila problem on the
Northwest Coast of North America. Landsc Urban Plan 34:287–299
Workman PL, Niswander JD (1970) Population studies on south-
western Indian tribes. II. Local genetic differentiation in the
Papago. Am J Hum Genet 22:24–49
Wright S (1965) The interpretation of population structure by
F-statistics with special regard to the systems of mating.
Evolution 19:395–420
Zhang J, Maun MA (1992) Effects of burial in sand on the growth and
reproduction of Cakile edentula. Ecography 15(3):296–302
Conserv Genet (2013) 14:185–193 193
123