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Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul J. Morris, Harvard University Robert A. Morris, UMASS-Boston & Harvard University

Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

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Page 1: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Floras in the 21st Century:The Flora of North America Saga

James A. Macklin, Agriculture and Agri-Food Canada&

Hong Cui, University of ArizonaPaul J. Morris, Harvard University

Robert A. Morris, UMASS-Boston & Harvard University

Page 2: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

FNA Histories● 1966: Flora North America (25 interested botanists)

● 1972: Operational BUT funding not stable (Smithsonian)

● 1982: Try again; lead at Missouri Botanical Garden

● 1993: First two volumes published

● 2015: Completion in 2015... over 20,000 vascular plant and bryophyte species, both native and naturalized

● 1989: Tropicos (MBG)

● 2006: eFloras (MBG)

● 2008: Digital Flora workshop (Harvard University)

● 2011: New presentation under development (Commercial hosting)

● 2015: FNA goes fully digital

Web/Database

Page 3: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

eFloras

Page 4: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 5: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 6: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 7: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Dynamism

● PROBLEM: Project has spanned more than two decades with many treatments now well out of date based on new science and this is before the project is even finished!

● BUT: Floras are dynamic by nature, both due to changes in our understanding of the relationship and delineation of the groups treated, and the appearance and disappearance of species in the treated area over time.

● THUS: Floras should be built and presented in a dynamic environment as well...

Page 8: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Challenges

Social:● Converting/convincing the masses...

“That was then, and this is now”

Technological:● Converting the printed word● Versioning changes● Editorial management● Maintaining quality (FilteredPush)● Concept management (ETC)

Page 9: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Value-added● Connect to specimens annotated during project and

other expert identifications. Mark-up characters to cross-reference with descriptions.

● Add vetted field pictures along with illustrations.● Improve distribution maps based on specimen data and

observations as well as generalized polygons.● Link out to publications citing taxa.● Link to genetic and ecological resources.● Services for re-purposing of FNA content by other

resources: ITIS, CoL, USDA-Plants, NatureServe, GPI/JSTOR, GNA-GNUB...

Page 10: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

The Glue● FilteredPush Network for annotation of

resources.● Ontologies to allow for reasoning; discovery of

related resources, resolving ambiguities or editing divergence.

● Editorial process and attribution/provenance (workflow tools like Kepler).

● Standards: Maintain quality and promote communication/re-use.

● Presentation: Semantic MediaWiki

Page 11: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Introducing ApplePie:A botanical annotation network

powered by FilteredPush

James A. Macklin

Lei Dou, James Hanken, Maureen Kelly, David Lowery, Bertram Ludaescher, Paul J. Morris, Robert A. Morris

DBI-0960535

Page 12: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Morphbank

Symbiota

FP Access PointFP

Helper

FPHelper

Specify6FP

Helper

AnnotationProcessor

AnnotationStore

Analysis: Cluster Duplicates

Publish Messages

FP Node

KeplerFP

Helper

Driver

WebClientFP

Helper

AnnotationProcessorDriver

InstitutionalDatabase

CSV, XML

Export

Input DataSet (csv)

GeoLocate IPNI FNA

Filtered PushNetwork

Google Cloud ServiceHuman Curation Visualization In Google Map Kepler Provenance Browser

A new determination transported through ApplePie network

FP Node

Communicating Knowledge

PUSH

HISTORY

FILTER

FILTER

Page 13: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Open Annotation Consortium

Page 14: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Fine-Grained Semantic Markup of Descriptive Data for Knowledge Applications

in Biodiversity Domains● PI: Dr. Hong Cui, School of Information Resources

and Library Science, U of Arizona● Domains: Botany, Entomology, Paleontology● “This project further develops a set of unsupervised

machine learning algorithms and creates a suite of domain-independent, high-throughput software that marks textual descriptive data of taxonomic treatments to support various knowledge applications, including producing character matrices and identification keys for different taxon groups.”

Page 15: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

2. Cirsium arvense (Linnaeus) Scopoli, Fl. Carniol. ed. 2. 2: 126. 1772.

Canada or creeping or field thistle, chardon du Canada ou des champs, cirse des champs

Serratula arvensis Linnaeus, Sp. Pl. 2: 820. 1753; Breea arvensis (Linnaeus) Lessing; Carduus arvensis (Linnaeus) Robson; Cirsium arvense var. argenteum (Peyer ex Vest) Fiori; C. arvense var. horridum Wimmer & Grabowski; C. arvense var. integrifolium Wimmer & Grabowski; C. arvense var. mite Wimmer & Grabowski; C. arvense var. vestitum Wimmer & Grabowski; C. incanum (S. G. Gmelin) Fischer ex M. Bieberstein; C. setosum (Willdenow) Besser ex M. Bieberstein

Perennials, dioecious or nearly so, 30–120(–200) cm; colonial from deep-seated creeping roots producing adventitious buds. Stems 1–many, erect, glabrous to appressed gray-tomentose; branches 0–many, ascending. Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not. Heads 1–many, borne singly or in corymbiform or paniculiform arrays at tips of main stem and branches. Peduncles 0.2–7 cm. Involucres ovoid in flower, ± campanulate in fruit, 1–2 × 1–2 cm, arachnoid tomentose, ± glabrate. Phyllaries in 6–8 series, strongly imbricate, (usually purple-tinged), ovate (outer) to linear (inner), abaxial faces with narrow glutinous ridge, outer and middle appressed, entire, apices ascending to spreading, spines 0–1 mm (fine); apices of inner phyllaries flat, ± flexuous, margins entire to minutely erose or ciliolate. Corollas purple (white or pink); staminate 12–18 mm, (remaining longer than pappus when head is fully mature), tubes 8–11 mm, throats 1–1.5 mm, lobes 3–5 mm; pistillate 14–20 mm, (overtopped by pappi in fruit), tubes 10–15 mm, throats ca. 1 mm, lobes 2–3 mm; style tips 1–2 mm. Cypselae brown, 2–4 mm, apical collar not differentiated; Pappi 13–32 mm, exceeding corollas. 2N = 34.

Flowering summer (Jun–Oct). Disturbed sites, fields, pastures, roadsides, forest openings; 0–2600 m; introduced; Greenland; St. Pierre and Miquelon; Alta., B.C., Man., N.B., Nfld. and Labr. (Nfld.), N.W.T., N.S., Ont., P.E.I., Que., Sask., Yukon; Ala., Alaska, Ariz., Ark., Calif., Colo., Conn., Del., D.C., Idaho, Ill., Ind., Iowa, Kans., Ky., Maine, Md., Mass., Mich., Minn., Mo., Mont., Nebr., Nev., N.H., N.J., N.Mex., N.Y., N.C., N.Dak., Ohio, Oreg., Pa., R.I., S.Dak., Tenn., Tex., Utah, Vt., Va., Wash., W.Va., Wis., Wyo.; native, Eurasia.

Page 16: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

2. Cirsium arvense (Linnaeus) Scopoli, Fl. Carniol. ed. 2. 2: 126. 1772.

Canada or creeping or field thistle, chardon du Canada ou des champs, cirse des champs

Serratula arvensis Linnaeus, Sp. Pl. 2: 820. 1753; Breea arvensis (Linnaeus) Lessing; Carduus arvensis (Linnaeus) Robson; Cirsium arvense var. argenteum (Peyer ex Vest) Fiori; C. arvense var. horridum Wimmer & Grabowski; C. arvense var. integrifolium Wimmer & Grabowski; C. arvense var. mite Wimmer & Grabowski; C. arvense var. vestitum Wimmer & Grabowski; C. incanum (S. G. Gmelin) Fischer ex M. Bieberstein; C. setosum (Willdenow) Besser ex M. Bieberstein

<description>Perennials, dioecious or nearly so, 30–120(–200) cm; colonial from deep-seated creeping roots producing adventitious buds. Stems 1–many, erect, glabrous to appressed gray-tomentose; branches 0–many, ascending. Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not. Heads 1–many, borne singly or in corymbiform or paniculiform arrays at tips of main stem and branches. Peduncles 0.2–7 cm. Involucres ovoid in flower, ± campanulate in fruit, 1–2 × 1–2 cm, arachnoid tomentose, ± glabrate. Phyllaries in 6–8 series, strongly imbricate, (usually purple-tinged), ovate (outer) to linear (inner), abaxial faces with narrow glutinous ridge, outer and middle appressed, entire, apices ascending to spreading, spines 0–1 mm (fine); apices of inner phyllaries flat, ± flexuous, margins entire to minutely erose or ciliolate. Corollas purple (white or pink); staminate 12–18 mm, (remaining longer than pappus when head is fully mature), tubes 8–11 mm, throats 1–1.5 mm, lobes 3–5 mm; pistillate 14–20 mm, (overtopped by pappi in fruit), tubes 10–15 mm, throats ca. 1 mm, lobes 2–3 mm; style tips 1–2 mm. Cypselae brown, 2–4 mm, apical collar not differentiated; Pappi 13–32 mm, exceeding corollas. 2N = 34.</description>

Flowering summer (Jun–Oct). Disturbed sites, fields, pastures, roadsides, forest openings; 0–2600 m; introduced; Greenland; St. Pierre and Miquelon; Alta., B.C., Man., N.B., Nfld. and Labr. (Nfld.), N.W.T., N.S., Ont., P.E.I., Que., Sask., Yukon; Ala., Alaska, Ariz., Ark., Calif., Colo., Conn., Del., D.C., Idaho, Ill., Ind., Iowa, Kans., Ky., Maine, Md., Mass., Mich., Minn., Mo., Mont., Nebr., Nev., N.H., N.J., N.Mex., N.Y., N.C., N.Dak., Ohio, Oreg., Pa., R.I., S.Dak., Tenn., Tex., Utah, Vt., Va., Wash., W.Va., Wis., Wyo.; native, Eurasia.

Page 17: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

- <statement id="53.txt-4"><structure id="o1069" name="leaf"/><text>Leaves:</text>

</statement> - <statement id="53.txt-5"> <structure id="o1070" name="blade">

<character char_type="range_value" name="shape" from="oblong" to="elliptic"/><character name="shape" value="oblong"/><character name="shape" value="elliptic"/><character char_type="range_value" name="length" from="3" from_unit="cm"

to="30" to_unit="cm"/><character char_type="range_value" name="width" from="1" from_unit="cm"

to="6" to_unit="cm"/> </structure> - <structure id="o1071" name="plane" constraint="margins">

<character name="shape_or_vernation" value="revolute"/><character name="shape" value="entire"/><character name="shape_or_architecture" value="spinulose"/><character name="shape" value="dentate"/><character name="shape" value="pinnatifid" modifier="shallowly deeply"/>

</structure>

Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not.

Page 18: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Based on characters we can now ask: What species have alternate leaves, armature, and an aggregate fruit?

Based on characters and their attributes we could ask:What species have alternate leaves greater than 5cm in length,armature that are prickles, and an aggregate fruit which is red in color?

FNA Glossary of charactersand attributes

FNA Ontology

FOC

FNA

Flora “X”

structure id="o1069" name="leaf" structure id="o1070" name="blade" character char_type="range_value" name="length" from="3" from_unit="cm" to="30" to_unit="cm"

structure id="o1069" same_as name="leaf" structure id="o1070" same_as name=”” character char_type="range_value" name="length" character name="size" value="long"

structure id="o1069" name="leaf" structure id="o1070" name="blade" character char_type="range_value" name="length" from="3" from_unit="cm" to="30" to_unit="cm"

structure id="o1069" same_as structure id="FOC896" name="leaf" structure id="o1070" same_as structure id="FOC1978" name="blade" character char_type="range_value" name="length" from="4" from_unit="cm" to="17" to_unit="cm"

TOPATOPO

PO: Plant Ontology; PATO: Phenotypic Qualities; TO: Trait Ontology

Page 19: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Ontological Term Organizer (OTO)

Page 20: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 21: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

http://biosemantics.arizona.edu/fnasearch/index.jsp

Page 22: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 23: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 24: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 25: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 26: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 27: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 28: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 29: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 30: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 31: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul
Page 32: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

FP Network

AnnotationStore

Current Treatment2. Cirsium arvense (Linnaeus) Scopoli, Fl. Carniol. ed. 2. 2: 126. 1772.

Canada or creeping or field thistle, chardon du Canada ou des champs, cirse des champs

Serratula arvensis Linnaeus, Sp. Pl. 2: 820. 1753; Breea arvensis (Linnaeus) Lessing; Carduus arvensis (Linnaeus) Robson; Cirsium arvense var. argenteum (Peyer ex Vest) Fiori; C. arvense var. horridum Wimmer & Grabowski; C. arvense var. integrifolium Wimmer & Grabowski; C. arvense var. mite Wimmer & Grabowski; C. arvense var. vestitum Wimmer & Grabowski; C. incanum (S. G. Gmelin) Fischer ex M. Bieberstein; C. setosum (Willdenow) Besser ex M. Bieberstein

Perennials, dioecious or nearly so, 30–120(–200) cm; colonial from deep-seated creeping roots producing adventitious buds. Stems 1–many, erect, glabrous to appressed gray-tomentose; branches 0–many, ascending. Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not. Heads 1–many, borne singly or in corymbiform or paniculiform arrays at tips of main stem and branches. Peduncles 0.2–7 cm. Involucres ovoid in flower, ± campanulate in fruit, 1–2 × 1–2 cm, arachnoid tomentose, ± glabrate. Phyllaries in 6–8 series, strongly imbricate, (usually purple-tinged), ovate (outer) to linear (inner), abaxial faces with narrow glutinous ridge, outer and middle appressed, entire, apices ascending to spreading, spines 0–1 mm (fine); apices of inner phyllaries flat, ± flexuous, margins entire to minutely erose or ciliolate. Corollas purple (white or pink); staminate 12–18 mm, (remaining longer than pappus when head is fully mature), tubes 8–11 mm, throats 1–1.5 mm, lobes 3–5 mm; pistillate 14–20 mm, (overtopped by pappi in fruit), tubes 10–15 mm, throats ca. 1 mm, lobes 2–3 mm; style tips 1–2 mm. Cypselae brown, 2–4 mm, apical collar not differentiated; Pappi 13–32 mm, exceeding corollas. 2N = 34.

Flowering summer (Jun–Oct). Disturbed sites, fields, pastures, roadsides, forest openings; 0–2600 m; introduced; Greenland; St. Pierre and Miquelon; Alta., B.C., Man., N.B., Nfld. and Labr. (Nfld.), N.W.T., N.S., Ont., P.E.I., Que., Sask., Yukon; Ala., Alaska, Ariz., Ark., Calif., Colo., Conn., Del., D.C., Idaho, Ill., Ind., Iowa, Kans., Ky., Maine, Md., Mass., Mich., Minn., Mo., Mont., Nebr., Nev., N.H., N.J., N.Mex., N.Y., N.C., N.Dak., Ohio, Oreg., Pa., R.I., S.Dak., Tenn., Tex., Utah, Vt., Va., Wash., W.Va., Wis., Wyo.; native, Eurasia.

QCAnalysis

PublicationsCharaparser(ETC)

GoldenGate

Flickr

Morphbank

Photo © Carl Farmer

Specimen andField Images

PUSH

Portal X

Herbaria

Distribution MapsGIS, modeling

EDITORIALPROCESSING

GenBankGenBankGenBank

Page 33: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Current Treatment

Dynamic Flora

Authoritative Treatment

Published Flora

1. Web ServicesUSDA Plants; EOL; JSTOR;Local/Regional Sites, etc.

Editorial ProcessingAnd Management

Author-driven

2. Cirsium arvense (Linnaeus) Scopoli, Fl. Carniol. ed. 2. 2: 126. 1772.

Canada or creeping or field thistle, chardon du Canada ou des champs, cirse des champs

Serratula arvensis Linnaeus, Sp. Pl. 2: 820. 1753; Breea arvensis (Linnaeus) Lessing; Carduus arvensis (Linnaeus) Robson; Cirsium arvense var. argenteum (Peyer ex Vest) Fiori; C. arvense var. horridum Wimmer & Grabowski; C. arvense var. integrifolium Wimmer & Grabowski; C. arvense var. mite Wimmer & Grabowski; C. arvense var. vestitum Wimmer & Grabowski; C. incanum (S. G. Gmelin) Fischer ex M. Bieberstein; C. setosum (Willdenow) Besser ex M. Bieberstein

Perennials, dioecious or nearly so, 30–120(–200) cm; colonial from deep-seated creeping roots producing adventitious buds. Stems 1–many, erect, glabrous to appressed gray-tomentose; branches 0–many, ascending. Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not. Heads 1–many, borne singly or in corymbiform or paniculiform arrays at tips of main stem and branches. Peduncles 0.2–7 cm. Involucres ovoid in flower, ± campanulate in fruit, 1–2 × 1–2 cm, arachnoid tomentose, ± glabrate. Phyllaries in 6–8 series, strongly imbricate, (usually purple-tinged), ovate (outer) to linear (inner), abaxial faces with narrow glutinous ridge, outer and middle appressed, entire, apices ascending to spreading, spines 0–1 mm (fine); apices of inner phyllaries flat, ± flexuous, margins entire to minutely erose or ciliolate. Corollas purple (white or pink); staminate 12–18 mm, (remaining longer than pappus when head is fully mature), tubes 8–11 mm, throats 1–1.5 mm, lobes 3–5 mm; pistillate 14–20 mm, (overtopped by pappi in fruit), tubes 10–15 mm, throats ca. 1 mm, lobes 2–3 mm; style tips 1–2 mm. Cypselae brown, 2–4 mm, apical collar not differentiated; Pappi 13–32 mm, exceeding corollas. 2N = 34.

Flowering summer (Jun–Oct). Disturbed sites, fields, pastures, roadsides, forest openings; 0–2600 m; introduced; Greenland; St. Pierre and Miquelon; Alta., B.C., Man., N.B., Nfld. and Labr. (Nfld.), N.W.T., N.S., Ont., P.E.I., Que., Sask., Yukon; Ala., Alaska, Ariz., Ark., Calif., Colo., Conn., Del., D.C., Idaho, Ill., Ind., Iowa, Kans., Ky., Maine, Md., Mass., Mich., Minn., Mo., Mont., Nebr., Nev., N.H., N.J., N.Mex., N.Y., N.C., N.Dak., Ohio, Oreg., Pa., R.I., S.Dak., Tenn., Tex., Utah, Vt., Va., Wash., W.Va., Wis., Wyo.; native, Eurasia.

2. Cirsium arvense (Linnaeus) Scopoli, Fl. Carniol. ed. 2. 2: 126. 1772.

Canada or creeping or field thistle, chardon du Canada ou des champs, cirse des champs

Serratula arvensis Linnaeus, Sp. Pl. 2: 820. 1753; Breea arvensis (Linnaeus) Lessing; Carduus arvensis (Linnaeus) Robson; Cirsium arvense var. argenteum (Peyer ex Vest) Fiori; C. arvense var. horridum Wimmer & Grabowski; C. arvense var. integrifolium Wimmer & Grabowski; C. arvense var. mite Wimmer & Grabowski; C. arvense var. vestitum Wimmer & Grabowski; C. incanum (S. G. Gmelin) Fischer ex M. Bieberstein; C. setosum (Willdenow) Besser ex M. Bieberstein

Perennials, dioecious or nearly so, 30–120(–200) cm; colonial from deep-seated creeping roots producing adventitious buds. Stems 1–many, erect, glabrous to appressed gray-tomentose; branches 0–many, ascending. Leaves: blades oblong to elliptic, 3–30 × 1–6 cm, margins plane to revolute, entire and spinulose, dentate, or shallowly to deeply pinnatifid, lobes well separated, lance-oblong to triangular-ovate, spinulose to few-toothed or few-lobed near base, main spines 1–7 mm, abaxial faces glabrous to densely gray-tomentose, adaxial green, glabrous to thinly tomentose; basal absent at flowering, petioles narrowly winged, bases tapered; principal larger cauline proximally winged-petiolate, distally sessile, well distributed, gradually reduced, not decurrent; distal cauline becoming bractlike, entire, toothed, or lobed, spinulose or not. Heads 1–many, borne singly or in corymbiform or paniculiform arrays at tips of main stem and branches. Peduncles 0.2–7 cm. Involucres ovoid in flower, ± campanulate in fruit, 1–2 × 1–2 cm, arachnoid tomentose, ± glabrate. Phyllaries in 6–8 series, strongly imbricate, (usually purple-tinged), ovate (outer) to linear (inner), abaxial faces with narrow glutinous ridge, outer and middle appressed, entire, apices ascending to spreading, spines 0–1 mm (fine); apices of inner phyllaries flat, ± flexuous, margins entire to minutely erose or ciliolate. Corollas purple (white or pink); staminate 12–18 mm, (remaining longer than pappus when head is fully mature), tubes 8–11 mm, throats 1–1.5 mm, lobes 3–5 mm; pistillate 14–20 mm, (overtopped by pappi in fruit), tubes 10–15 mm, throats ca. 1 mm, lobes 2–3 mm; style tips 1–2 mm. Cypselae brown, 2–4 mm, apical collar not differentiated; Pappi 13–32 mm, exceeding corollas. 2N = 34.

Flowering summer (Jun–Oct). Disturbed sites, fields, pastures, roadsides, forest openings; 0–2600 m; introduced; Greenland; St. Pierre and Miquelon; Alta., B.C., Man., N.B., Nfld. and Labr. (Nfld.), N.W.T., N.S., Ont., P.E.I., Que., Sask., Yukon; Ala., Alaska, Ariz., Ark., Calif., Colo., Conn., Del., D.C., Idaho, Ill., Ind., Iowa, Kans., Ky., Maine, Md., Mass., Mich., Minn., Mo., Mont., Nebr., Nev., N.H., N.J., N.Mex., N.Y., N.C., N.Dak., Ohio, Oreg., Pa., R.I., S.Dak., Tenn., Tex., Utah, Vt., Va., Wash., W.Va., Wis., Wyo.; native, Eurasia.

2. Publish on DemandPDF with keys, maps,images, etc.

3. FNA Mobile Phone APPEveryone else has one!

Page 34: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

ETC: Exploring Taxon Concepts through Analysing Fine-Grained Semantic Markup of

Taxonomic Literature

James A. MacklinAgriculture and Agri-Food Canada

Hong CuiUniversity of Arizona, USA

Bertram LudaescherUniversity of California at Davis, USA

Robert A. MorrisUniversity of Massachusetts, Boston & Harvard University, USA

DBI-1147266

Page 35: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Traditional Workflow

ETC Workflow

Page 36: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Concept Visualization

FNA

Gleason

CoL

Iowa

Arund

90% Confidence

Page 37: Floras in the 21 st Century: The Flora of North America Saga James A. Macklin, Agriculture and Agri-Food Canada & Hong Cui, University of Arizona Paul

Acknowledgments● FNAA: Flora of North America Association

– FNA IT Committee

● FilteredPush Team● Harvard: James Hanken, Chinua Iloabachie, Maureen A. Kelly, David B.

Lowery, Paul J. Morris, Robert A. Morris, Donna Tremonte, Zhimin Wang ● UC Davis: Lei Dou, Bertram Ludaescher, Timothy Mcphillips

● Botanical Semantic Parsing Team● Hong Cui, Alex Dusenbery, Paul, J. Morris, Robert A. Morris, Kaiyun Yu

Components of this work are licensed under a Creative Commons Attribution-Share Alike 3.0 License.