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EMBL ( European Molecular Biology Laboratory ) Nucleotide Sequence Database. http://www.ebi.ac.uk/embl/. E uropean B ioinformatic I nstitute. http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+1o9eO1ZbuKF+-page+batchJobStatus. - PowerPoint PPT Presentation
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EMBL(European Molecular Biology Laboratory)
Nucleotide Sequence Database
http://www.ebi.ac.uk/embl/
EuropeanBioinformaticInstitute
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+1o9eO1ZbuKF+-page+batchJobStatus
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+batchJobStatus+-id+1o9eO1Zbt00
http://srs.ebi.ac.uk
Applications in SRS
SWISSPROT
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Sequence
query
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BLAST results- text file
BLAST
Indexing
linking
Pathway
Prosite
Protein Applications in SRSHomology and similarity tools:
BLASTP : database search toolFASTA : database search toolMPSrch
Protein function analysis tools:PPSearh : BLASTProdomScanRegExpFingerPrintScanPfScanInterProScanMPSrch
• Sequence analysis tools: - ClustalW
Nucleotide applications in SRS
Homology and similarity toolsBLASTNNFASTAFASTXFASTY
Sequence analysis tools:NClustalWRestrictionMap
Integr8
• Permite identificar y descargar información genómica para especies que tengan el genoma completo.
• Integr8 : Biología, analisis genoma y proteoma• Los datos se integran a partir de diferentes
fuentes: EMBL Nucleotide Sequence Database (EMBL-Bank); Ensembl; the UniProt Knowledge base; InterPro; CluSTr; and the Gene Ontology Annotation database