Upload
dylan-easterday
View
85
Download
0
Embed Size (px)
Citation preview
Dylan Easterday
Lab Partners: Samuel Payne, Angelique Crawley, Zohra Anwar
Lab Report 2
Biology 10100 Section 6XX2
10/30/16
Effect of Food Source on Enzymatic Activity in C. maculatusAbstract: Hypothesis and Justification
As an agricultural pest, Callosobruchus maculatus, or the cowpea seed beetle (figure 1),
is ubiquitous. This organism has habitat on every continent of the world except for Antarctica
and is a pest of the legume species often grown as food sources in regions of Africa and Asia (Li
et al 2016). Callosobruchus is of the order Coleoptera, which
includes all beetles and weevils, and is the largest order in all the
animal kingdom: containing amazing variety and an estimated
30% of all animal species on earth (Meyer 2016). This variety
and distribution around the globe suggests that species like C.
maculatus may be highly specialized to exploit specific food
sources, and adapted to do so.
This organism is model example of a significant pest to the crops of Mung Beans and
Cowpeas, Vigna radiata and Vigna unguiculata repectively (CCNY Department of Biology 63).
To prevent damage to crops or stored seeds that reduce yield, farmers will often employ the use
1
Figure 1 Illustration of morphology of C. maculatus showing sexual dimorphism. (Blumer and Beck 2016)
logarithmic The equation represents the value of absorbency in AU (y) for a given value of concentration of the BSA solution in µg/mL.
of organophosphate pesticides. One such pesticide is the compound known as malaoxon (figure
2) which works to eradicate these pests through the action of acetylcholinesterase (AChE)
inhibition. AChE is a critical component in the cycle of excitation and inhibition of neurons,
including those responsible for motor functions. After acetylcholine neurotransmitters (ACh) are
released from the terminal end of the excited neuron, they bind
at receptor sites in the receiving neuron and trigger excitation,
thus continuing the signal. AChE then ends the signal by
cleaving ACh at the receptor site into molecules of choline and
acetate. Inhibition of AChE by organophosphate pesticides
results in a breakdown of this cycle and endless muscle
contraction in the organism – resulting in death (CCNY Biology
Department 63-64).
Some experimental evidence is available to suggest that because of the structural
similarities between manufactured pesticides like malaoxon and natural compounds present in
Vigna, these pests may have developed some adaptive ability to resist the effects of
organophosphate pesticides, according to studies referenced by the department (CCNY Biology
Department 65). Increased resistance may result in increased use of pesticides with diminishing
effectiveness, loss of crop yield, and high economic impact in areas that depend on trade of these
legume crops. Additionally, there may be some relationship between the level of resistance and
the food source of the beetle larva (Liang et al. 2007).
Our investigation focused on the potential effect of the food source of C. maculatus on
enzymatic activity that could result in detoxification of organophosphate AChE inhibitors. Our
two-tailed hypothesis was that the food source for C. maculatus would have some effect on the
2
Figure 2: Structure of malaoxon, an organophosphate pesticide (NCBI 2016).
resulting enzymatic activity in the organism with a null hypothesis of no change in enzymatic
activity between food sources.
Experimental Design
Our experimental design was set up to include two experiments split by the substrate
tested (alpha and beta) with the food source as our independent variables (cowpeas and mung
beans). In both experiments we set out to find the potential relationship between the food source
and the effects on our dependent variables, ANAE and BNAE activity shown in the beetle
samples by test with relevant substrates: α-naphthyl acetate
and β-naphthyl acetate. These substrates served as proxy
indicators of enzymatic activity targeting structures like that
of organophosphate AChE inhibitors (CCNY Biology
Department 65-66). We kept a standardized variable as the
strain of C. maculatus, known as LB. Within each
experiment on the respective food sources, there were 2 treatment levels and 1 replication. Our
sample sizes were as follows: βNAE-cowpea replication had a sample size of 12, βNAE-mung
bean replication had a sample size of 17, αNAE-cowpea had a sample size of 17, and αNAE-
mung bean had a sample size of 18.
As a group, we followed the procedure set in the lab manual, starting first with a crude
protein extraction then a colorimetric enzyme assay testing enzymatic action on both αNA and
βNA by detection of byproducts with a dye – thus indicating activity in the form of changes to
absorbance (AU), and finally adjusting for variation in beetle size and differences possible in the
protein extraction by a protein assay. The protein content adjustment was completed using a
calibration curve to find the relationship between absorbance in the colorimetric assay results to
3
Figure 3 Experimental Setup of Protein Assay and Serial Dilution
calculate protein content in our samples (figure 4). An example of the calibration calculation is
as follows. In our sample beetle number 1, a female, we had observed an absorbance reading of
0.282 AU while testing for αNAE in the colorimetric assay, and 0.156 AU while testing for
βNAE similarly. The colorimetric assay was performed using the previously prepared crude
extracts by measuring the spectrophotometric absorbency of the samples after the addition of 800
µL of Bradford dye reagent. The Bradford test works by the mechanism of the dye binding
primarily to the arginine residues left by the reaction between the crude extract and the Bradford
solution (Experimental Biosciences 2016). The resulting bond changes the structure of the dye,
causing a change in the wavelengths of light absorbed and the appearance of color. This
absorbency is again measured using the spectrophotometer. By using the calibration curve
obtained with the results from the graph of the serial dilution, we could apply the equation found
to calculate the protein content of our sample from the absorbance reading we observed earlier in
the experiment. The relationship between protein concentration (x value) and absorbance (y
value) is given by the equation y=0.2913 ln (x )−0.9053. Therefore, we could solve for the
unknown protein content by applying the known absorbance value and rearranging the equation:
x=e0.282+0.905
0.2913 and then multiplying the result by 0.050 mL to adjust our units to the volume of
each sample, for a final value of 4.36 µg of protein in the sample. This result was then used to
find a rate of enzymatic activity (αNAE and βNAE) by using the formula: Absorbance( AU )
ProteinContent (µg).
From this, αNAE activity level measured at 0.065 AU/µg and 0.36 AU/µg for βNAE for our
sample organism 1.
Finally, in our methods, the results were analyzed using a two-tailed t-test and the results were
compared for both the αNAE and βNAE experimental results.
4
Our experiment prediction was that, controlling for the difference in protein content
across samples, we would observe a difference in either αNAE or βNAE activity based on the
food source of C. maculatus – either Vigna radiata or Vigna unguiculate.
Results and Data Analysis
As can be seen in figure 5 the
resulting data on the average αNAE
activity among the samples of beetles
feeding on mung beans and cowpeas
shows little difference and a wide range
for the standard deviation within the
sample. The mean for the sample of αNAE
– mung bean was 0.0893 AU/µg with a
standard deviation of 0.0703 AU/µg and
the mean for αNAE – cowpea was 0.0909
AU/µg with a standard deviation of 0.1309
AU/µg.
Table 1: t-test results for the ANAE experiment comparing food sources on enzymatic activity.
ANAE T-TEST RESULTSt-calculated 0.0567
t-critical for 95% confidence level >2.03, <2.04Degrees of Freedom 33
Confidence Level <80%
5
Figure 4 Graph of Mean ANAE Activity comparing food sources. The error bars show the standard deviation for each treatment group.
Food Source
Mung bean Cowpea
After conducting a two-tailed t-test, the resulting data analysis (table 1) shows a
calculated t of 0.0567. Far off from the t-critical value for these data of between 2.03 and 2.04.
With 33 degrees of freedom, the estimated confidence level is below 80%.
Figure 6 shows the resulting means of
the samples of both experiments testing
for βNAE activity. The samples on the
mean βNAE activity from beetles
feeding on mung beans was 0.0159
AU/µg and 0.0557 AU/µg for those
feeding on cowpeas. The standard
deviations of these data were 0.0097
AU/µg for the mung bean samples and
0.1044 AU/µg for the cowpea samples.
The two-tailed t-test comparing samples
across food sources (table 2) shows a t-
calculated value of 1.58, falling short of
the t-critical of 2.05. With 27 degrees of freedom within the samples, our confidence level in
these data is greater than 80% but less than 90%.
Table 2: t-test results for the BNAE experiment comparing food sources on enzymatic activity
BNAE T-TEST RESULTS Column1t-calculated 1.58
t-critical for 95% confidence level 2.05Degrees of Freedom 27
Confidence Level >80%, <90%
6
Figure 5: Graph of mean BNAE activity experiment comparing food sources. The error bars show the standard deviation for each treatment group.
Food Source
Mung bean Cowpea
Discussion and Conclusions
The results of the experiments here do not support our hypothesis or predictions. While some
level of difference in enzymatic activity is hinted in the results here, the data analysis clearly
shows that the differences are not statistically significant. There are several possibilities as to
why our data fail to show a real difference in enzymatic activity. One possibility is that, due to
our relatively small sample sizes, errors in protein or absorbance readings may have skewed our
data and resulted in off readings. What is evidenced by our findings is that resistance to
pesticides in C. maculatus is not directly related to enzymatic activity, but if present, may be due
to some other environmental, evolutionary, or adaptive function. To speculate, since enzymes are
proteins that often function at optimal levels at a given temperature, further experiments may be
designed to test whether higher or lower temperatures have any effect on the readings of the
enzymatic assays. Additionally, these tests are meant to represent the enzymatic activity on
AChE inhibitors by using compounds that are structurally similar, but not identical, to
organophosphate toxins like malaoxon. Further study on the exact structure and function of these
AChE inhibitors may be needed.
7
Literature Cited
Blumer, Lawrence. Beck, Christopher. (2014, June) A Handbook on Bean Beetle,
Callosobruchus maculatus. www.beanbeetles.org/handbook.
Department of Biology, City College of New York. Course Supplement for Biological
Foundations I Bio 10100. Fall 2016.
Experimental Biosciences. Resources for introductory and intermediate level laboratory courses.
http://www.ruf.rice.edu/~bioslabs/methods/protein/bradford.html (accessed Nov. 29,
2016)
Liang, P. Cui J-Z., Yang, X-Q. and Gao, X-W. 2007 Effects of host plants on insecticide
susceptibility and carboxylesterase activity in Bemisia tabaci biotype B and greenhouse
whitefly, Trialeurodes vaporariorum. Pest Management Science 63: 365-371.
Meyer, John R. "Classification & Distribution." Coleoptera. General Entomology, 28 Mar. 2016.
Web. 2 Nov. 2016.
National Center for Biotechnology Information. PubChem Compound Database; CID=15415,
https://pubchem.ncbi.nlm.nih.gov/compound/15415 (accessed Nov. 2, 2016).
8