Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Customer Publications Selected Publications

2013 Almeida JL, Hill CR, Cole KD. Mouse cell line authentication. Cytotechnology. 2013 Feb 22. OLIGOS

Arsenault RJ, Li Y, Maattanen P, Scruten E, Doig K, Potter A, Griebel P, Kusalik A, Napper S. Altered Toll-like receptor 9 signaling in Mycobacterium avium subsp. paratuberculosis-infected bovine monocytes reveals potential therapeutic targets. Infect Immun. 2013 Jan;81(1):226-37. doi: 10.1128/IAI.00785-12. MODS

Athavale SS, Gossett JJ, Bowman JC, Hud NV, Williams LD, Harvey SC. In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus. PLoS One. 2013;8(1):e54384. doi: 10.1371/journal.pone.0054384. MODS

Barr N, Ruiz-Arce R, Obregón O, De Leon R, Foster N, Reuter C, Boratynski T, Vacek D. Molecular diagnosis of populational variants of Anthonomus grandis (Coleoptera: Curculionidae) in North America. J Econ Entomol. 2013 Feb;106(1):437-49. OLIGOS

Bendix C, Mendoza JM, Stanley DN, Meeley R, Harmon FG. The circadian clock-associated gene gigantea1 affects maize developmental transitions. Plant Cell Environ. 2013 Jan 21. doi: 10.1111/pce.12067. OLIGOS

Chen KC, Ravichandran A, Guerrero A, Deng P, Baird SM, Smith L, Lu SE. The Burkholderia contaminans MS14 ocfc gene encodes a xylosyltransferase for production of the antifungal Occidiofungin. Appl Environ Microbiol. 2013 May;79(9):2899-905. doi: 10.1128/AEM.00263-13. OLIGOS, SEQ

Gargis AS, Heath LS, Heath HE, Leblanc PA, Gargis SR, Harris TH, Sloan GL. Complete nucleotide sequences of plasmids pACK2 and pACK5 from Staphylococcus simulans biovar staphylolyticus. Plasmid. 2013 Feb 6. pii: S0147-619X(13)00020-6. doi: 10.1016/j.plasmid.2013.01.008. SEQ

Gökçen A, Vilcinskas A, Wiesner J. Methods to identify enzymes that degrade the main extracellular polysaccharide component of Staphylococcus epidermidis biofilms. Virulence. 2013 Apr 1;4(3):260-70. doi: 10.4161/viru.23560. GENE OLIGOS

Gross JB, Furterer A, Carlson BM, Stahl BA. An integrated transcriptome-wide analysis of cave and surface dwelling Astyanax mexicanus. PLoS One. 2013;8(2):e55659. doi: 10.1371/journal.pone.0055659. NEXT GEN

Gutierrez West CK, Klein SL, Lovell CR. High frequency of virulence factor genes tdh, trh, and tlh in Vibrio parahaemolyticus strains isolated from a pristine estuary. Appl Environ Microbiol. 2013 Apr;79(7):2247-52. doi: 10.1128/AEM.03792-12. OLIGOS

Hsu YH, Cook SR, Alexander TW, Klima CL, Niu YD, Brent Selinger L, McAllister TA. Investigation of Mannheimia haemolytica bacteriophages relative to host diversity. J Appl Microbiol. 2013 Mar 12. doi: 10.1111/jam.12185. NEXT GEN

Jabaji Z, Sears CM, Brinkley GJ, Lei N, Joshi VS, Wang J, Lewis M, Stelzner M, Martín MG, Dunn JC. Use of Collagen Gel as an Alternative Extracellular Matrix for the In Vitro and In Vivo Growth of Murine Small Intestinal Epithelium. Tissue Eng Part C Methods. 2013 Apr 8. DLPs

Jozefkowicz C, Rosi P, Sigaut L, Soto G, Pietrasanta LI, Amodeo G, Alleva K. Loop A is critical for the functional interaction of two beta vulgaris PIP aquaporins. PLoS One. 2013;8(3):e57993. doi: 10.1371/journal.pone.0057993. OLIGOS

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Lamothe S, Zhang S. The serum- and glucocorticoid-inducible kinase SGK1 and SGK3 regulate hERG channel expression via ubiquitin ligase Nedd4-2 and GTPase Rab11. J Biol Chem. 2013 Apr 15. [Epub ahead of print] SEQ

Lee CS, Watkins E, Burnsed OA, Schwartz Z, Boyan BD. Tailoring adipose stem cell trophic factor production with differentiation medium components to regenerate chondral defects. Tissue Eng Part A. 2013 Mar 28. [Epub ahead of print] OLIGOS

Liu JL, Zabetakis D, Goldman ER, Anderson GP. Selection and evaluation of single domain antibodies toward MS2 phage and coat protein. Mol Immunol. 2013 Jan;53(1-2):118-25. doi: 10.1016/j.molimm.2012.07.010. OLIGOS, SEQ

Lomniczi A, Loche A, Castellano JM, Ronnekleiv OK, Bosch M, Kaidar G, Knoll JG, Wright H, Pfeifer GP, Ojeda SR. Epigenetic control of female puberty. Nat Neurosci. 2013 Mar;16(3):281-9. doi: 10.1038/nn.3319. OLIGOS

Lynch T, Chong P, Zhang J, Hizon R, Du T, Graham MR, Beniac DR, Booth TF, Kibsey P, Miller M, Gravel D, Mulvey MR; Canadian Nosocomial Infection Surveillance Program (CNISP). Characterization of a stable, metronidazole-resistant Clostridium difficile clinical isolate. PLoS One. 2013;8(1):e53757. doi: 10.1371/journal.pone.0053757. NEXT GEN

Maki ML, Armstrong L, Leung KT, Qin W. Increased expression of β-glucosidase A in Clostridium thermocellum 27405 significantly increases cellulase activity. Bioengineered. 2013 Jan-Feb;4(1):15-20. doi: 10.4161/bioe.21951. SEQ

Marshall HD, Baker AJ, Grant AR. Complete mitochondrial genomes from four subspecies of common chaffinch (Fringilla coelebs): new inferences about mitochondrial rate heterogeneity, neutral theory, and phylogenetic

relationships within the order Passeriformes. Gene. 2013 Mar 15;517(1):37-45. doi: 10.1016/j.gene.2012.12.093. Ordonez H, Shuman S. Mycobacterium smegmatis Lhr is a DNA-dependent ATPase and a 3'-to-5' DNA translocase andhelicase that prefers to unwind 3'-tailed RNA:DNA hybrids. J Biol Chem. 2013 Apr 2. [Epub ahead of print] MODS

Rehren F, Ritter B, Dittrich-Breiholz O, Henke A, Lam E, Kati S, Kracht M, Heim A. Induction of a broad spectrum of inflammation-related genes by Coxsackievirus B3requires Interleukin-1 signaling. Med Microbiol Immunol. 2013 Feb;202(1):11-23. doi: 10.1007/s00430-012-0245-2. siRNA

Robinson CM, Zhou X, Rajaiya J, Yousuf MA, Singh G, Deserres JJ, Walsh MP, Wong S, Seto D, Dyer DW,Chodosh J, Jones MS. Predicting the next eye pathogen: analysis of a novel adenovirus. MBio. 2013 Apr 9;4(2). pii: e00595-12. doi: 10.1128/mBio.00595-12. NEXT GEN

Rotman C, Fischel L, Cortez G, Greiss H, Rana N, Rinehart J, Coulam CB. A search to identify genetic risk factors for endometriosis. Am J Reprod Immunol. 2013 Jan;69(1):92-5. doi: 10.1111/aji.12034. OLIGOS

Ruemmele JA, Hall WP, Ruvuna LK, Van Duyne RP. A localized surface plasmon resonance imaging instrument for multiplexed biosensing. Anal Chem. 2013 Apr 19. [Epub ahead of print] MODS

Sears B, Rohr JR. Loss of trematode parthenitae in Planorbella trivolvis (Mollusca: Gastropoda). J Parasitol. 2013 Feb 6. [Epub ahead of print}. SEQ

Servick SV, Soltis PS, Soltis DE. Microsatellite marker development for Galax urceolata (Diapensiaceae). Am J Bot. 2011 Mar;98(3):e48-50. doi: 10.3732/ajb.1000427. OLIGO TOOLS

Schindler BD, Patel D, Seo SM, Kaatz GW. Mutagenesis and modeling to predict structural and functional characteristicsof the Staphylococcus aureus MepA multidrug efflux pump. J Bacteriol. 2013 Feb;195(3):523-33. doi: 10.1128/JB.01679-12. OLIGOS

Stewart JE, Andrew M, Bao X, Chilvers M, Carris L, Peever T. Development and utility of sequence characterized amplified genomic regions (SCAR) for lower-level fungal systematics: Proof of principle using Alternaria, Ascochyta and Tilletia. Mycologia. 2013 Feb 28. [Epub ahead of print] RAPDs

Tuz K, Hsiao YC, Juarez O, Shi B, Harmon EY, Phelps IG, Lennartz MR, Glass IA, Doherty D, Ferland RJ. The Joubert Syndrome associated missense mutation (V443D) in the Abelson-helper integration site 1 (AHI1) protein alters its localization and protein-protein interactions. J Biol Chem. 2013 Mar 26. [Epub ahead of print]. SEQ

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Visi DK, D'Souza N, Ayre BG, Webber Iii CL, Allen MS. Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing. J Ind Microbiol Biotechnol. 2013 May;40(5):465-75. doi: 10.1007/s10295-013-1242-1. NEXT GEN

Xu S, Reuter T, Gilroyed BH, Tymensen L, Hao Y, Hao X, Belosevic M, Leonard JJ, McAllister TA. Microbial communities and greenhouse gas emissions associated with the biodegradation of specified risk material in compost. Waste Manag. 2013 Mar 12. pii: S0956-053X(13)00066-4. doi: 10.1016/j.wasman.2013.01.036. SEQ

Zhou NA, Lutovsky AC, Andaker GL, Gough HL, Ferguson JF. Cultivation and characterization of bacterial isolates capable of degrading pharmaceutical and personal care products for improved removal in activated sludge wastewater treatment. Biodegradation. 2013 Feb 28. [Epub ahead of print] SimpleSeq

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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2012 Abraham NM, Lamlertthon S, Fowler VG Jr, Jefferson KK. Chelating agents exert distinct effects on biofilm formation in Staphylococcus aureus depending on strain background: role for Clumping factor B. J Med Microbiol. 2012 Apr 19. SEQ

Acosta-Hoyos AJ, Matsuura SE, Meyer PR, Scott WA. A role of template cleavage in reduced excision of chain-terminating nucleotides by human immunodeficiency virus type 1 reverse transcriptase containing the M184V mutation. J Virol. 2012 May;86(9):5122-33. MOD

Ajitkumar P, Barkema HW, Zadoks RN, Morck DW, van der Meer FJ, De Buck J. High-resolution melt analysis for species identification of coagulase-negative Staphylococci derived from bovine milk. Diagn Microbiol Infect Dis. 2013 Mar;75(3):227-34. doi: 10.1016/j.diagmicrobio.2012.11.008 SEQ

Akerstrom V, Chen C, Lan MS, Breslin MB .Modifications to the INSM1 promoter to preserve specificity and activity for use in adenoviral gene therapy of neuroendocrine carcinomas. Cancer Gene Ther. 2012 Dec;19(12):828-38. doi: 10.1038/cgt.2012.66. OLIGOS

Andeer P, Strand SE, Stahl DA. High-sensitivity stable-isotope probing by a quantitative terminal restriction fragment length polymorphism protocol. Appl Environ Microbiol. 2012 Jan;78(1):163-9. MOD

Andresen L, Skovbakke SL, Persson G, Hagemann-Jensen M, Hansen KA, Jensen H, Skov S 2-deoxy D-glucose prevents cell surface expression of NKG2D ligands through inhibition of N-linked glycosylation. J Immunol. 2012 Feb 15;188(4):1847-55. siRNA

Ashfaq M, Khan AS. Genetic diversity in basmati rice (Oryza sativa L.) germplasm as revealed by microsatellite (SSR) markers. Genetika. 2012 Jan;48(1):62-71. OLIGOS

Banan M, Esmaeilzadeh-Gharehdaghi E, Nezami M, Deilami Z, Farashi S, Philipsen S, Esteghamat F, Pourfarzad F, Ali Imam A, Najmabadi H. cAMP response element-binding protein 1 is required for hydroxyurea-mediated induction of γ-globin expression in K562 cells. Clin Exp Pharmacol Physiol. 2012 Jun;39(6):510-7. doi: 10.1111/j.1440-1681.2012.05702.x. siRNA

Bandounas L, Pinkse M, de Winde JH, Ruijssenaars HJ. Identification of a quinone dehydrogenase from a Bacillus sp. involved in the decolourization of the lignin-model dye, Azure B. N Biotechnol. 2012 Apr 27. GeneOLIGOS

Bansal A, Harris RA, DeGrado TR. Choline phosphorylation and regulation of transcription of choline kinase α in hypoxia. J Lipid Res. 2012 Jan;53(1):149-57. PAGE/MODS

Braga Mdo S, Diniz PP, André MR, de Bortoli CP, Machado RZ. Molecular characterisation of Bartonella species in cats from São Luís, state of Maranhão, north-eastern Brazil. Mem Inst Oswaldo Cruz. 2012 Sep;107(6):772-7. OLIGOS

Capomaccio S, Willand ZA, Cook SJ, Issel CJ, Santos EM, Reis JK, Cook RF Detection, molecular characterization and phylogenetic analysis of full-length equine infectious anemia (EIAV) gag genes isolated from Shackleford Banks wild horses. Vet Microbiol. 2012 Jun 15;157(3-4):320-32. SEQ

Collins AJ, Labarre BA, Wong Won BS, Shah MV, Heng S, Choudhury MH, Haydar SA, Santiago J, Nyholm SV. Diversity and partitioning of bacterial populations within the accessory nidamental gland of the squid, Euprymna scolopes. Appl Environ Microbiol. 2012 Jun;78(12):4200-8. MODS

Culleton RL, Ferreira PE . Duffy phenotype and Plasmodium vivax infections in humans and apes, Africa. Emerg Infect Dis. 2012 Oct;18(10):1704-5. doi: 10.3201/eid1810.120120.. SEQ

de Souza HL, de Carvalho VR, Romeiro FG, Sassaki LY, Keller R, Rodrigues J . Mucosa-associated but not luminal Escherichia coli is augmented in Crohn's disease and ulcerative colitis. Gut Pathog. 2012 Dec 13;4(1):21. doi: 10.1186/1757-4749-4-21. OLIGOS

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Dehghan S, Liu EB, Seto J, Torres SF, Hudson NR, Kajon AE, Metzgar D, Dyer DW, Chodosh J, Jones MS, Seto D. Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease. J Virol. 2012 Jan;86(1):635-6. NEXT GEN

DeVore MS, Gull SF, Johnson CK. Classic maximum entropy recovery of the average joint distribution of apparent FRET efficiency and fluorescent photons for single-molecule burst measurements. J Phys Chem B. 2012 Apr 5;116(13):4006-15. doi: 10.1021/jp209861u. MODS

Doroudi M, Schwartz Z, Boyan BD. Phospholipase A(2) activating protein is required for 1α,25-dihydroxyvitamin D(3) dependent rapid activation of protein kinase C via Pdia3. J Steroid Biochem Mol Biol. 2012 Mar 16;132(1-2):48-56. DLPs

Emblem A, Karlsen BO, Evertsen J, Miller DJ, Moum T, Johansen SD. Mitogenome polymorphism in a single branch sample revealed by SOLiD deep sequencing of the Lophelia pertusa coral genome. Gene. 2012 Jun 30. NEXT GEN

Falah N, Violot S, Décimo D, Berri F, Foucault-Grunenwald ML, Ohlmann T, Schuffenecker I, Morfin F, Lina B, Riteau B, Cortay JC. Ex vivo and in vivo inhibition of human rhinovirus replication by a new pseudosubstrate of viral 2A protease. J Virol. 2012 Jan;86(2):691-704. OLIGOS

Fechter I, Hausmann L, Daum M, Sörensen TR, Viehöver P, Weisshaar B, Töpfer R. Candidate genes within a 143 kb region of the flower sex locus in Vitis. Mol Genet Genomics. 2012 Mar;287(3):247-59. NEXT GEN

Ferrari FA, Goddard J, Paddock CD, Varela-Stokes AS. Rickettsia parkeri and Candidatus Rickettsia andeanae in Gulf Coast tick,Mississippi, USA. Emerg Infect Dis. 2012 Oct;18(10):1705-7. doi: 10.3201/eid1810.120250. SEQ

Franklin MT, Ritland CE, Myers JH, Cory JS. Multiple Mating and Family Structure of the Western Tent Caterpillar, Malacosoma californicum pluviale: Impact on Disease Resistance. PLoS One. 2012;7(5):e37472. SEQ

Galindo MM, Voigt N, Stein J, van Lengerich J, Raguse JD, Hofmann T, Meyerhof W, Behrens M. G protein-coupled receptors in human fat taste perception. Chem Senses. 2012 Feb;37(2):123-39. SEQ

Gandhi A, Walsh EE, Formica MA, Hennessey PA, Criddle MM, Peterson DR, Baran A, Falsey AR. Factors associated with symptomatic rhinovirus infection in patients with COPD. J Clin Virol. 2012 Dec;55(4):343-7. doi: 10.1016/j.jcv.2012.08.020. SEQ

Giamanco KA, Matthews RT. Deconstructing the perineuronal net: cellular contributions and molecularcomposition of the neuronal extracellular matrix. Neuroscience. 2012 Aug 30;218:367-84. doi: 10.1016/j.neuroscience.2012.05.055. HPSF PURIFICATION

Hanke T, Richhardt J, Polen T, Sahm H, Bringer S, Bott M. Influence of oxygen limitation, absence of the cytochrome bc(1) complex and low pH on global gene expression in Gluconobacter oxydans 621H using DNA microarray technology. J Biotechnol. 2012 Feb 10;157(3):359-72. doi: 10.1016/j.jbiotec.2011.12.020. Microarray

He Y, Tao W, Wang Z, Shayya W Effects of pH and seasonal temperature variation on simultaneous partial nitrification and anammox in free-water surface wetlands. J Environ Manage. 2012 Jul 2;110C:103-109. MOD

Heinl S, Wibberg D, Eikmeyer F, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A. Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. J Biotechnol. 2012 Mar 20. NEXT GEN

Hepel M, Stobiecka M, Peachey J, Miller J. Intervention of glutathione in pre-mutagenic catechol-mediated DNA damage in the presence of copper(II) ions. Mutat Res. 2012 Jul 1;735(1-2):1-11. MOD

Hong NJ, Garvin JL. NADPH oxidase 4 mediates flow-induced superoxide production in thick ascending limbs. Am J Physiol Renal Physiol. 2012 Oct 15;303(8):F1151-6. doi: 10.1152/ajprenal.00181.2012. siRNA

Howard, M. D. A., Jones, A. C., Schnetzer, A., Countway, P. D., Tomas, C. R., Kudela, R. M., Hayashi, K., Chia, P. and Caron, D. A. (2012), Quantitative real-time polymerase chain reaction for Cochlodimium fulvescens

Eurofins Genomics

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(Dinophyceae), a harmful dinoflaggelate from California coastal waters. Journal of Phycology, 48: 384–393. doi: 10.1111/j.1529-8817.2012.01120.x DLP

Huang RE, Liang J, Lu Q, Zhang XY. Micoletzkya chinaae n. sp. (Nematoda: Diplogastridae), a potential predacious nematode and Ektaphelenchus macrobulbosus (Nematoda: Ektaphelenchinae) isolated from Simao pine in South-western China. J Nematol. 2010 Dec;42(4):298-306. SEQ

Hung CY, Holliday BM, Kaur H, Yadav R, Kittur FS, Xie J. Identification and characterization of selenate- and selenite-responsive genes in a Se-hyperaccumulator Astragalus racemosus. Mol Biol Rep. 2012 Jul;39(7):7635-46. SEQ

Iliff BW, Riazuddin SA, Gottsch JD. A single-base substitution in the seed region of miR-184 causes EDICT syndrome. Invest Ophthalmol Vis Sci. 2012 Jan 25;53(1):348-53. SEQ

Jabbour D, Sorger A, Sahm K, Antranikian G. A highly thermoactive and salt-tolerant α-amylase isolated from a pilot-plant biogas reactor. Appl Microbiol Biotechnol. 2012 Jun 29. SEQ

Jain V, Hilton B, Patnaik S, Zou Y, Chiarelli MP, Cho BP. Conformational and thermodynamic properties modulate the nucleotideexcision repair of 2-aminofluorene and 2-acetylaminofluorene dG adducts in the NarI sequence. Nucleic Acids Res. 2012 May;40(9):3939-51. doi: 10.1093/nar/gkr1307. OLIGOS

Karczmarczyk M, Stephan R, Hächler H, Fanning S. Complete nucleotide sequence of pVQS1 containing a quinolone resistance determinant from Salmonella enterica serovar Virchow associated with foreign travel. J Antimicrob Chemother. 2012 May 2. NEXT GEN

Lee WK, Chakraborty PK, Roussa E, Wolff NA, Thévenod F. ERK1/2-dependent bestrophin-3 expression prevents ER-stress-induced cell death in renal epithelial cells by reducing CHOP. Biochim Biophys Acta. 2012 Jun 13. siRNA

Leprince A, de Lorenzo V, Völler P, van Passel MW, Martins Dos Santos VA. Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ Microbiol. 2012 Jun;14(6):1444-53. doi: 10.1111/j.1462-2920.2012.02730.x. SEQ

Li M, Zhang J, Suri S, Sooter LJ, Ma D, Wu N. Detection of adenosine triphosphate with an aptamer biosensor based on surface-enhanced Raman scattering. Anal Chem. 2012 Mar 20;84(6):2837-42. MODS

Li Z, Nandakumar R, Madayiputhiya N, Li X.. Proteomic Analysis of 17β-Estradiol Degradation by Stenotrophomonas maltophilia. Environ Sci Technol. 2012 Jun 5;46(11):5947-55. SEQ

Lindsay, D. L., Bailey, P., Anderson, J. L., Jung, M. G., Edwards, C. E., & Lance, R. F. (2012). Isolation and characterization of microsatellite loci for a hyper-rare cliff endemic, Erigeron lemmonii, and a more widespread congener, Erigeron arisolius (Asteraceae). Conservation Genetics Resources, 4(4), 849-852. MODS

Lomniczi A, Garcia-Rudaz C, Ramakrishnan R, Wilmot B, Khouangsathiene S, Ferguson B, Dissen GA, Ojeda SR. A single-nucleotide polymorphism in the EAP1 gene is associated with amenorrhea/oligomenorrhea in nonhuman primates. Endocrinology. 2012 Jan;153(1):339-49. OLIGOS

Malouli D, Nakayasu ES, Viswanathan K, Camp DG 2nd, Chang WL, Barry PA, Smith RD, Früh K. Re-evaluation of the coding potential and proteomic analysis of the BAC derived Rhesus cytomegalovirus strain 68-1. J Virol. 2012 Jun 20. NEXT GEN

Markiewicz RP, Vrtis KB, Rueda D, Romano LJ. Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase I. Nucleic Acids Res. 2012 Jun 4. MODS

Martin DD, Ahpin CY, Heit RJ, Perinpanayagam MA, Yap MC, Veldhoen RA, Goping IS, Berthiaume LG. Tandem reporter assay for myristoylated proteins post-translationally (TRAMPP) identifies novel substrates for post-translational myristoylation: PKCε, a case study. FASEB J. 2012 Jan;26(1):13-28. SEQ

Medrano S, Monteagudo MC, Sequeira-Lopez ML, Pentz ES, Gomez RA. Two microRNAs, miR-330 and miR-125b-5p, mark the juxtaglomerular cell and balance its smooth muscle phenotype. Am J Physiol Renal Physiol. 2012 Jan;302(1):F29-37. MODS (DIGOXYGENIN)

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Miszczak F, Legrand L, Balasuriya UB, Ferry-Abitbol B, Zhang J, Hans A, Fortier G, Pronost S, Vabret A. Emergence of novel equine arteritis virus (EAV) variants during persistentinfection in the stallion: origin of the 2007 French EAV outbreak was linked to an EAV strain present in the semen of a persistently infected carrier stallion. Virology. 2012 Feb 20;423(2):165-74. doi: 10.1016/j.virol.2011.11.028. SEQ Monstein HJ, Ryberg A, Karlsson A. Assessment of the mosaic structure in the Helicobacter pylori cagA gene 3'-region using an improved polymerase chain reaction-based assay. Diagn Microbiol Infect Dis. 2012 Jul;73(3):281-3. NEXT GEN

Moulton VR, Holcomb DR, Zajdel MC, Tsokos GC. Estrogen upregulates cyclic AMP response element modulator expression and down regulates interleukin-2 production by human T lymphocytes. Mol Med. 2012 May 9;18:370-8. doi: 10.2119/molmed.2011.00506. OLIGOS

Orlotti NI, Cimino-Reale G, Borghini E, Pennati M, Sissi C, Perrone F, Palumbo M, Daidone MG, Folini M, Zaffaroni N. Autophagy acts as a safeguard mechanism against G-quadruplex ligand-mediated DNA damage. Autophagy. 2012 Aug 1;8(8). siRNA

Osbrink WL, Cornelius ML, Lax AR. Areawide field study on effect of three chitin OLIGOSesis inhibitor baits on populations of Coptotermes formosanus and Reticulitermes flavipes (Isoptera: Rhinotermitidae). J Econ Entomol. 2011 Jun;104(3):1009-17. SEQ

O'Toole KK, Jenkins A. The apparent voltage dependence of GABAA receptor activation and modulation is inversely related to channel open probability. Mol Pharmacol. 2012 Feb;81(2):189-97. SEQ

Park JH, Olivares-Navarrete R, Wasilewski CE, Boyan BD, Tannenbaum R, Schwartz Z. Use of polyelectrolyte thin films to modulate osteoblast response tomicrostructured titanium surfaces. Biomaterials. 2012 Jul;33(21):5267-77. doi: 10.1016/j.biomaterials.2012.03.074. MODS (MOLEC BEACONS)

Paul D, Bridges S, Burgess SC, Dandass Y, Lawrence ML. Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T. J Bacteriol. 2008 Aug;190(15):5531-2. doi: 10.1128/JB.00614-08. SEQ -PRIMER WALK

Peng X, Yando E, Hildebrand E, Dwyer C, Kearney A, Waciega A, Valiela I, Bernhard AE. Differential responses of ammonia-oxidizing archaea and bacteria to long-term fertilization in a New England salt marsh. Front Microbiol. 2012;3:445. doi: 10.3389/fmicb.2012.00445 MODS

Penwell A, Sharp K, Mansour M, Sammatur L. Development and validation of an HPLC/UV assay for separation and quantification of peptide antigens from a liposomal vaccine delivery platform. J Pharm Biomed Anal. 2012 Jul;66:176-82. OLIGOS oligo adjuvant

Preidis GA, Saulnier DM, Blutt SE, Mistretta TA, Riehle KP, Major AM, Venable SF, Finegold MJ, Petrosino JF,Conner ME, Versalovic J. Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine. FASEB J. 2012 May;26(5):1960-9. doi: 10.1096/fj.10-177980. OLIGOS (454 BAR CODE PRIMERS)

Qian J, Ferguson TM, Shinde DN, Ramírez-Borrero AJ, Hintze A, Adami C, Niemz A. Sequence dependence of isothermal DNA amplification via EXPAR. Nucleic Acids Res. 2012 Jun;40(11):e87. doi: 10.1093/nar/gks230. OLIGOS

Ramaswami G, Lin W, Piskol R, Tan MH, Davis C, Li JB. Accurate identification of human Alu and non-Alu RNA editing sites. Nat Methods. 2012 Jun;9(6):579-81. doi: 10.1038/nmeth.1982. SEQ

Ross P, Buntzman AS, Vincent BG, Grover EN, Gojanovich GS, Collins EJ, Frelinger JA, Hess PR. Allelic diversity at the DLA-88 locus in Golden Retriever and Boxer breeds is limited. Tissue Antigens. 2012 May 10. doi: 10.1111/j.1399-0039.2012.01889.x. SEQ

Rothe M, Alpert C, Engst W, Musiol S, Loh G, Blaut M. Impact of nutritional factors on the proteome of intestinal Escherichia coli: induction of OxyR-dependent proteins AhpF and Dps by a lactose-rich diet. Appl Environ Microbiol. 2012 May;78(10):3580-91. SEQ

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Rubenstein M, Hollowell CM, Guinan P. Differentiated prostatic antigen expression in LNCaP cells following treatment with bi-specific antisense oligonucleotides directed against BCL-2 and EGFR. Med Oncol. 2012 Jun;29(2):835-41. doi: 10.1007/s12032-011-9977-x. MODS

Sass P, Berscheid A, Jansen A, Oedenkoven M, Szekat C, Strittmatter A, Gottschalk G, Bierbaum G. Genome sequence of Staphylococcus aureus VC40, a vancomycin- and daptomycin-resistant strain, to study the genetics of development of resistance to currently applied last-resort antibiotics. J Bacteriol. 2012 Apr;194(8):2107-8. NEXT GEN

Sassa A, Beard WA, Prasad R, Wilson SH. DNA sequence context effects on the glycosylase activity of human 8-oxoguanine DNA glycosylase. J Biol Chem. 2012 Oct 26;287(44):36702-10. doi: 10.1074/jbc.M112.397786. PAGE PURIFICIATION

Schaab M, Kausch H, Klammt J, Nowicki M, Anderegg U, Gebhardt R, Rose-John S, Scheller J, Thiery J, Kratzsch J. Novel regulatory mechanisms for generation of the soluble leptin receptor: implications for leptin action. PLoS One. 2012;7(4):e34787. siRNA

Schmid P, Ravenell KR, Sheldon SL, Flegel WA. DARC alleles and Duffy phenotypes in African Americans. Transfusion. 2012 Jun;52(6):1260-7. doi: 10.1111/j.1537-2995.2011.03431.x. OLIGOS

Schmidt N, Art J, Forsch I, Werner A, Erkel G, Jung M, Horke S, Kleinert H, Pautz A. The anti-inflammatory fungal compound (S)-Curvularin reduces pro-inflammatory gene expression in an in-vivo model of rheumatoid arthritis. J Pharmacol Exp Ther. 2012 Jul 5. OpArray

Schweneker M, Lukassen S, Späth M, Wolferstätter M, Babel E, Brinkmann K, Wielert U, Chaplin P, Suter M, Hausmann J. The vaccinia virus O1 protein is required for sustained activation of extracellular signal-regulated kinase 1/2 and promotes viral virulence. J Virol. 2012 Feb;86(4):2323-36. NEXT GEN

Schweikert EM, Amort J, Wilgenbus P, Förstermann U, Teiber JF, Horke S. Paraoxonases -2 and -2 are important defense enzymes against Pseudomonas aeruginosa virulence factors due to their anti-oxidative and anti-inflammatory properties. J Lipids. 2012;2012:352857. doi: 10.1155/2012/352857. DLPs

Singh G, Robinson CM, Dehghan S, Schmidt T, Seto D, Jones MS, Dyer DW, Chodosh J. Overreliance on the hexon gene, leading to misclassification of human adenoviruses. J Virol. 2012 Apr;86(8):4693-5. doi: 10.1128/JVI.06969-11. NEXT GEN

Singh M, Mockler D, Akalin A, Burke S, Shroyer A, Shroyer KR. Immunocytochemical colocalization of P16(INK4a) and Ki-67 predicts CIN2/3and AIS/adenocarcinoma. Cancer Cytopathol. 2012 Feb 25;120(1):26-34. doi: 10.1002/cncy.20188. OLIGO (MULTIPLEX PRIMERS)

Solivio MJ, Nemera DB, Sallans L, Merino EJ. Biologically relevant oxidants cause bound proteins to readily oxidatively cross-link at Guanine. Chem Res Toxicol. 2012 Feb 20;25(2):326-36. doi: 10.1021/tx200376e. OLIGOS

Stobiecka M, Molinero AA, Chałupa A, Hepel M. Mercury/Homocysteine Ligation-Induced ON/OFF-Switching of a T-T Mismatch-Based Oligonucleotide Molecular Beacon. Anal Chem. 2012 Jun 5;84(11):4970-8. MODS (MOLEC BEACON)

Stoeckle BC, Theuerkauf J, Rouys S, Gula R, Lorenzo A, Lambert C, Kaeser T, Kuehn R. Identification of polymorphic microsatellite loci for the endangered Kagu (Rhynochetos jubatus) by high-throughput sequencing. J Ornithol. 2012 153,1, 249-253, DOI: 10.1007/s10336-011-0736-8. NexGen

Taqi MM, Wärmländer SK, Yamskova O, Madani F, Bazov I, Luo J, Zubarev R, Verbeek D, Gräslund A, Bakalkin G. Conformation effects of CpG methylation on single-stranded DNA oligonucleotides: analysis of the opioid Peptide dynorphin-coding sequences. PLoS One. 2012;7(6):e39605. HPLC Purification

Towbin H, Wenter P, Guennewig B, Imig J, Zagalak JA, Gerber AP, Hall J. Systematic screens of proteins binding to OLIGOSetic microRNA precursors. Nucleic Acids Res. 2013 Feb 1;41(3):e47. doi: 10.1093/nar/gks1197. RNA OLIGOS

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Van Slyke AC, Cheng YM, Mafi P, Allard CR, Hull CM, Shi YP, Claydon TW Proton block of the pore underlies the inhibition of hERG cardiac K+ channels during acidosis. Am J Physiol Cell Physiol. 2012 Jun;302(12):C1797-806. SEQ

Vanderlinde EM, Yost CK. Genetic analysis reveals links between lipid A structure and expression of the outer membrane protein gene, ropB, in Rhizobium leguminosarum. FEMS Microbiol Lett. 2012 Oct;335(2):130-9. doi: 10.1111/j.1574-6968.2012.02645.x. SEQ

Wenzel M, Wunderlich M, Besch R, Poeck H, Willms S, Schwantes A, Kremer M, Sutter G, Endres S, Schmidt A, Rothenfusser S. Cytosolic DNA triggers mitochondrial apoptosis via DNA damage signaling proteins independently of AIM2 and RNA polymerase III. J Immunol. 2012 Jan 1;188(1):394-403. siRNA

Xiao L, Zhang L, Wang HH. Critical issues in detecting viable Listeria monocytogenes cells by real-time reverse transcriptase PCR. J Food Prot. 2012 Mar;75(3):512-7. OLIGO ANALYSIS TOOL

Xu D, Wang M, Kinard G, Li R. Complete genome sequence of two isolates of pokeweed mosaic virus and its relationship to other members of the genus Potyvirus. Arch Virol. 2012 Oct;157(10):2023-6. SEQ

Xu L, Ravnskov S, Larsen J, Nilsson RH, Nicolaisen M. Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing. Soil Biol Biochem. 2012 Mar;46:26-32. NEXT GEN

Yildirim N, Long F, Gao C, He M, Shi HC, Gu AZ. Aptamer-based optical biosensor for rapid and sensitive detection of 17β-estradiol in watersamples. Environ Sci Technol. 2012 Mar 20;46(6):3288-94. doi: 10.1021/es203624w. MODS

Young GR, Eksmond U, Salcedo R, Alexopoulou L, Stoye JP, Kassiotis G. Resurrection of endogenous retroviruses in antibody-deficient mice. Nature. 2012 Nov 29;491(7426):774-8. doi: 10.1038/nature11599. OLIGOS

Yu L, Nicolaisen M, Larsen J, Ravnskov S. Succession of root-associated fungi in Pisum sativum during a plant growth cycle as examined by 454 pyrosequencing. Plant and Soil 2012, DOI: 10.1007/s11104-012-1188-5. NEXT GEN

Zajac P, Ahmadian A. Targeted transcript profiling by sequencing. Sci Rep. 2012;2:821. doi: 10.1038/srep00821. MODS

Zhang J, Go YY, Huang CM, Meade BJ, Lu Z, Snijder EJ, Timoney PJ, Balasuriya UB. Development and characterization of an infectious cDNA clone of the modified live virus vaccine strain of equine arteritis virus. Clin Vaccine Immunol. 2012 Jun 27. SEQ

Zeng J, Konopka G, Hunt BG, Preuss TM, Geschwind D, Yi SV. Divergent whole-genome methylation maps of human and chimpanzee brainsreveal epigenetic basis of human regulatory evolution. Am J Hum Genet. 2012 Sep 7;91(3):455-65. doi: 10.1016/j.ajhg.2012.07.024. OLIGOS (CUSTOM HI-SEQ PRIMERS)

Zhou C, Mao Y, Sugimoto Y, Zhang Y, Kanthamneni N, Yu B, Brueggemeier RW, Lee LJ, Lee RJ. SPANosomes as delivery vehicles for small interfering RNA (siRNA). Mol Pharm. 2012 Feb 6;9(2):201-10. siRNA

Zhou X, Robinson CM, Rajaiya J, Dehghan S, Seto D, Jones MS, Dyer DW, Chodosh J. Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64. Invest Ophthalmol Vis Sci. 2012 May 14;53(6):2804-11. NEXT GEN

Eurofins Genomics

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2011 Aslett D, Haas J, Hyman M. Identification of tertiary butyl alcohol (TBA)-utilizing organisms in BioGAC reactors using 13C-DNA stable isotope probing. Biodegradation. 2011 Sep;22(5):961-72. SEQ

Atkinson SD, McGilligan VE, Liao H, Szeverenyi I, Smith FJ, Moore CB, McLean WH. Development of allele-specific therapeutic siRNA for keratin 5 mutations in epidermolysis bullosa simplex. J Invest Dermatol. 2011 Oct;131(10):2079-86. doi: 10.1038/jid.2011.169. siRNA

Barrientos RM, Frank MG, Crysdale NY, Chapman TR, Ahrendsen JT, Day HE, Campeau S, Watkins LR, Patterson SL, Maier SF. Little exercise, big effects: reversing aging and infection-induced memory deficits, and underlying processes. J Neurosci. 2011 Aug 10;31(32):11578-86. OLIGO ANALYSIS TOOL

Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF. Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant. J Bacteriol. 2011 May;193(9):2377-8. NEXT GEN

Buckwalter MR, Nga PT, Gouilh MA, Fiette L, Bureau JF, Laird ME, Buchrieser J, Ozden S, Cheval J, Eloit M, Manuguerra JC, Gessain A, Brey PT, Fontanet A, Albert ML. Identification of a novel neuropathogenic Theiler's murine encephalomyelitis virus. J Virol. 2011 Jul;85(14):6893-905. NexGen

Chakrabarti SK, Wen Y, Dobrian AD, Cole BK, Ma Q, Pei H, Williams MD, Bevard MH, Vandenhoff GE, Keller SR, Gu J, Nadler JL. Evidence for activation of inflammatory lipoxygenase pathways in visceral adipose tissue of obese Zucker rats. Am J Physiol Endocrinol Metab. 2011 Jan;300(1):E175-87. OLIGOS

Chen N, Pinsky BA, Lee BP, Lin M, Schrijver I. Ultrasensitive detection of drug-resistant pandemic 2009 (H1N1) influenza A virus by rare-variant-sensitive high-resolution melting-curve analysis. J Clin Microbiol. 2011 Jul;49(7):2602-9. OLIGOS

Coucheron DH, Nymark M, Breines R, Karlsen BO, Andreassen M, Jørgensen TE, Moum T, Johansen SD. Characterization of mitochondrial mRNAs in codfish reveals unique features compared to mammals. Curr Genet. 2011 Jun;57(3):213-22. NEXT GEN

Croxton MD, Andreu MA, WilliamsDA, Overholt WA, Smith JA. Geographic Origins and Genetic Diversity of Air-Potato (Dioscorea bulbifera) in Florida. Invasive Plant Sci Mgmt 4(1):22-30. 2011 doi: http://dx.doi.org/10.1614/IPSM-D-10-00033.1. MOD

Depoix C, Tee MK, Taylor RN. Molecular regulation of human placental growth factor (PlGF) gene expression in placental villi and trophoblast cells is mediated via the protein kinase a pathway. Reprod Sci. 2011 Mar;18(3):219-28. OLIGOS

de Montgolfier B, Audet C, Cyr DG. Regulation of the connexin 43 promoter in the brook trout testis: role of the thyroid hormones and cAMP. Gen Comp Endocrinol. 2011 Jan 1;170(1):110-8. OLIGOS

Demberg T, Ettinger AC, Aladi S, McKinnon K, Kuddo T, Venzon D, Patterson LJ, Phillips TM, Robert-Guroff M. Strong viremia control in vaccinated macaques does not prevent gradual Th17 cell loss from central memory. Vaccine. 2011 Aug 11;29(35):6017-28. HPLC 2-step Purification

Galbraith DW, Janda J, Lambert GM. Multiparametric analysis, sorting, and transcriptional profiling of plant protoplasts and nuclei according to cell type. Methods Mol Biol. 2011;699:407-29. MODS

Go YY, Snijder EJ, Timoney PJ, Balasuriya UB. Characterization of equine humoral antibody response to the nonstructural proteins of equine arteritis virus. Clin Vaccine Immunol. 2011 Feb;18(2):268-79. SEQ

Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20024-9. NEXT GEN

Eurofins Genomics

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| 11

Hirai M, Kadowaki N, Kitawaki T, Fujita H, Takaori-Kondo A, Fukui R, Miyake K, Maeda T, Kamihira S, Miyachi Y, Uchiyama T. Bortezomib suppresses function and survival of plasmacytoid dendritic cells by targeting intracellular trafficking of Toll-like receptors and endoplasmic reticulum homeostasis. Blood. 2011 Jan 13;117(2):500-9. OLIGOS

Huang LJ, Chuang IC, Dong HP, Yang RC. Hypoxia-inducible factor 1α regulates the expression of the mitochondrial ATPase inhibitor protein (IF1) in rat liver. Shock. 2011 Jul;36(1):90-6. OLIGOS

Ibrahim AF, Weirauch U, Thomas M, Grünweller A, Hartmann RK, Aigner A. MicroRNA replacement therapy for miR-145 and miR-33a is efficacious in a model of colon carcinoma. Cancer Res. 2011 Aug 1;71(15):5214-24. siRNA

Johansen SD, Karlsen BO, Furmanek T, Andreassen M, Jørgensen TE, Bizuayehu TT, Breines R, Emblem A, Kettunen P, Luukko K, Edvardsen RB, Nordeide JT, Coucheron DH, Moum T. RNA deep sequencing of the Atlantic cod transcriptome. Comp Biochem Physiol Part D Genomics Proteomics. 2011 Mar;6(1):18-22. NEXT GEN

Kobayashi M, Yoshinaga T, Seki T, Wakasa-Morimoto C, Brown KW, Ferris R, Foster SA, Hazen RJ, Miki S, Suyama-Kagitani A, Kawauchi-Miki S, Taishi T, Kawasuji T, Johns BA, Underwood MR, Garvey EP, Sato A, Fujiwara T. In Vitro antiretroviral properties of S/GSK1349572, a next-generation HIV integrase inhibitor. Antimicrob Agents Chemother. 2011 Feb;55(2):813-21. SEQ Kostamo K, Olsson S, Korpelainen H. Search for stress-responsive genes in the red alga Furcellaria lumbricalis (Rhodophyta) by expressed sequence tag analysis J Exper Marine Biol Ecol. 2011 Jul;404(1,2):21-6. NEXT GEN

Kwon S, Gewirtz AT, Hurley DJ, Robertson TP, Moore JN, Vandenplas ML. Disparities in TLR5 expression and responsiveness to flagellin in equine neutrophils and mononuclear phagocytes. J Immunol. 2011 Jun 1;186(11):6263-70. SEQ

Laura M, Lazzari B, Bobbio V, Caprera A, Borghi C, Strozzi F, Allavena A, Stella A De novo sequencing of anemone Coronaria transcriptome to discover putative genes involved in Tranzechelia discolour infection response. Proc Jnt Mtg AGI-SIBV-SIGA– 19/22 2011Sep 7.12 ISBN 978-88-904570-2-9. NEXT GEN

Mallona I, Egea-Cortines M, Weiss J. Conserved and divergent rhythms of crassulacean acid metabolism-related and core clock gene expression in the cactus Opuntia ficus-indica. Plant Physiol. 2011 Aug;156(4):1978-89. NEXT GEN

Maruo R, Yamada H, Watanabe M, Hidaka Y, Iwatani Y, Takano T. mRNA quantification after fluorescence activated cell sorting using locked nucleic acid probes. Mol Biotechnol. 2011 Sep;49(1):42-7. OLIGOS

Matsui M, Sharma KC, Cooke C, Wakimoto BT, Rasool M, Hayworth M, Hylton CA, Tomkiel JE. Nuclear structure and chromosome segregation in Drosophila male meiosis depend on the ubiquitin ligase dTopors. Genetics. 2011 Nov;189(3):779-93. SEQ Morohoshi T, Wang WZ, Someya N, Ikeda T. Genome sequence of Microbacterium testaceum StLB037, an N-acylhomoserine lactone-degrading bacterium isolated from potato leaves. J Bacteriol. 2011 Apr;193(8):2072-3. NEXT GEN

Mraheil MA, Billion A, Mohamed W, Mukherjee K, Kuenne C, Pischimarov J, Krawitz C, Retey J, Hartsch T, Chakraborty T, Hain T. The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages. Nucleic Acids Res. 2011 May;39(10):4235-48. NEXT GEN

Nørholm AB, Hendus-Altenburger R, Bjerre G, Kjaergaard M, Pedersen SF, Kragelund BB. The intracellular distal tail of the Na+/H+ exchanger NHE1 is intrinsically disordered: implications for NHE1 trafficking. Biochemistry. 2011 May 3;50(17):3469-80. SEQ

Okura M, Osaki M, Fittipaldi N, Gottschalk M, Sekizaki T, Takamatsu D. The minor pilin subunit Sgp2 is necessary for assembly of the pilus encoded by the srtG cluster of Streptococcus suis. J Bacteriol. 2011 Feb;193(4):822-31. Oleksiak MF, Karchner SI, Jenny MJ, Franks DG, Welch DB, Hahn ME. Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site. BMC Genomics. 2011 May 24;12:263. NEXT GEN

Eurofins Genomics

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Ozawa T, Jin A, Tajiri K, Takemoto M, Okuda T, Shiraki K, Kishi H, Muraguchi A. Characterization of a fully human monoclonal antibody against extracellular domain of matrix protein 2 of influenza A virus. Antiviral Res. 2011 Sep;91(3):283-7. Antibodies

Quiñones B, Swimley MS, Taylor AW, Dawson ED. Identification of Escherichia coli O157 by using a novel colorimetric detection method with DNA microarrays. Foodborne Pathog Dis. 2011 Jun;8(6):705-11. MODS

Park JT, Hirano J-I, Thangavei V, Riebel BR, Bommarius AS. NAD(P)H oxidase V from Lactobacillus plantarum

(NoxV) displays enhanced operational stability even in absence of reducing agents. J Molec Catalysis B: Enzym. 2011 Sep;71(3-4):159-65.SEQ

Pham TD, Geleta M, Bui TM, Bui TC, Merker A, Carlsson AS. Comparative analysis of genetic diversity of sesame (Sesamum indicum L.) from Vietnam and Cambodia using agro-morphological and molecular markers. Hereditas. 2011 Feb;148(1):28-35. doi: 10.1111/j.1601-5223.2010.02196.x. OLIGOS

Rasti M, Arabsolghar R, Khatooni Z, Mostafavi-Pour Z. p53 Binds to estrogen receptor 1 promoter in human breast cancer cells. Pathol Oncol Res. 2012 Apr;18(2):169-75. siRNA

Schoen C, Weber-Lehmann J, Blom J, Joseph B, Goesmann A, Strittmatter A, Frosch M. Whole-genome sequence of the transformable Neisseria meningitidis serogroup A strain WUE2594. J Bacteriol. 2011 Apr;193(8):2064-5. NEXT GEN

Schulte JH, Bachmann HS, Brockmeyer B, Depreter K, Oberthür A, Ackermann S, Kahlert Y, Pajtler K, Theissen J, Westermann F, Vandesompele J, Speleman F, Berthold F, Eggert A, Brors B, Hero B, Schramm A, Fischer M. High ALK receptor tyrosine kinase expression supersedes ALK mutation as a determining factor of an unfavorable phenotype in primary neuroblastoma. Clin Cancer Res. 2011 Aug 1;17(15):5082-92. SEQ

Tomlinson JK, Cooley AJ, Zhang S, Johnson ME. Granulomatous lymphadenitis caused by Talaromyces helicus in a Labrador Retriever. Vet Clin Pathol. 2011 Dec;40(4):553-7. doi: 10.1111/j.1939-165X.2011.00377.x. SEQ

Van De Werfhorst LC, Sercu B, Holden PA. Comparison of the host specificities of two bacteroidales quantitative PCR assays used for tracking human fecal contamination. Appl Environ Microbiol. 2011 Sep;77(17):6258-60. doi: 10.1128/AEM.00239-11. DLPs

Wang YH, Poudel DD, Hasenstein KH. Identification of SSR markers associated with saccharification yield using pool-based genome-wide association mapping in sorghum. Genome. 2011 Nov;54(11):883-9. Plate OLIGOS

Wu EY, Beese LS. The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism. J Biol Chem. 2011 Jun 3;286(22):19758-67. MODS

Zenoni S, D'Agostino N, Tornielli GB, Quattrocchio F, Chiusano ML, Koes R, Zethof J, Guzzo F, Delledonne M, Frusciante L, Gerats T, Pezzotti M. Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes. Plant J. 2011 Oct;68(1):11-27. doi: 10.1111/j.1365-313X.2011.04661.x. NEXT GEN

Zhurina D, Zomer A, Gleinser M, Brancaccio VF, Auchter M, Waidmann MS, Westermann C, van Sinderen D, Riedel CU. Complete genome sequence of Bifidobacterium bifidum S17. J Bacteriol. 2011 Jan;193(1):301-2. NEXT GEN

Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH. Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PLoS Pathog. 2011 Oct;7(10):e1002290. NEXT GEN

Eurofins Genomics

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2010 Akamatsu HO, Chilvers MI, Stewart JE, Peever TL. Identification and function of a polyketide OLIGOSase gene responsible for 1,8-dihydroxynaphthalene-melanin pigment bioOLIGOSesis in Ascochyta rabiei. Curr Genet. 2010 Aug;56(4):349-60. OLIGOS

Boado RJ, Hui EK, Lu JZ, Pardridge WM. Drug targeting of erythropoietin across the primate blood-brain barrier with an IgG molecular Trojan horse. J Pharmacol Exp Ther. 2010 Jun;333(3):961-9. SEQ

Boado RJ, Hui EK, Lu JZ, Zhou QH, Pardridge WM. Selective targeting of a TNFR decoy receptor pharmaceutical to the primate brain as a receptor-specific IgG fusion protein. J Biotechnol. 2010 Mar;146(1-2):84-91. SEQ

Bujor AM, Nakerakanti S, Morris E, Hant FN, Trojanowska M. Akt inhibition up-regulates MMP1 through a CCN2-dependent pathway in human dermal fibroblasts. Exp Dermatol. 2010 Apr;19(4):347-54. OLIGOS

da Costa KA, Rai KS, Craciunescu CN, Parikh K, Mehedint MG, Sanders LM, McLean-Pottinger A, Zeisel SH. Dietary docosahexaenoic acid supplementation modulates hippocampal development in the Pemt-/- mouse. J Biol Chem. 2010 Jan 8;285(2):1008-15. OLIGOS

Dudek KA, Lafont JE, Martinez-Sanchez A, Murphy CL. Type II collagen expression is regulated by tissue-specific miR-675 in human articular chondrocytes. J Biol Chem. 2010 Aug 6;285(32):24381-7. siRNA

Hong SP, Oh Y, Jung M, Lee S, Jeon H, Cho MY, Lee SH, Choi EH Topical calcitriol restores the impairment of epidermal permeability and antimicrobial barriers induced by corticosteroids. Br J Dermatol. 2010 Jun;162(6):1251-60. doi: 10.1111/j.1365-2133.2010.09760.x. MODS

Kessler J, Hahnel A, Wichmann H, Rot S, Kappler M, Bache M, Vordermark D. HIF-1α inhibition by siRNA or chetomin in human malignant glioma cells: effects on hypoxic radioresistance and monitoring via CA9 expression. BMC Cancer. 2010 Nov 4;10:605. siRNA

Kim M, Jung M, Hong SP, Jeon H, Kim MJ, Cho MY, Lee SH, Man MQ, Elias PM, Choi EH. Topical calcineurin inhibitors compromise stratum corneum integrity, epidermal permeability and antimicrobial barrier function. Exp Dermatol. 2010 Jun;19(6):501-10. MODS

Kwon HJ, Hong YK, Park C, Choi YH, Yun HJ, Lee EW, Kim BW. Widdrol induces cell cycle arrest, associated with MCM down-regulation, in human colon adenocarcinoma cells. Cancer Lett. 2010 Apr 1;290(1):96-103. OpArray

Laub LB, Jones BD, Powell WH. Responsiveness of a Xenopus laevis cell line to the aryl hydrocarbon receptor

ligands 6-formylindolo[3,2-b]carbazole (FICZ) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Chemico-Biological Interactions 2010 Jan;183(1), :202-11. OLIGOS

Liang X, Moseman EA, Farrar MA, Bachanova V, Weisdorf DJ, Blazar BR, Chen W. Toll-like receptor 9 signaling by CpG-B oligodeoxynucleotides induces an apoptotic pathway in human chronic lymphocytic leukemia B cells. Blood. 2010 Jun 17;115(24):5041-52. OLIGOS

López-Vinyallonga S, Arakaki M, Garcia-Jacas N, Susanna A, Gitzendanner MA, Soltis DE, Soltis PS. Isolation and characterization of novel microsatellite markers for Arctium minus (Compositae). Am J Bot. 2010 Feb;97(2):e4-6. OLIGOS

Lunde ML, Warnakulasuriya S, Sand L, Hirsch JM, Vasstrand EN, Ibrahim SO. Gene expression analysis by cDNA microarray in oral cancers from two Western populations. Anticancer Res. 2010 Apr;30(4):1083-91. AROS

Mazaud-Guittot S, Meugnier E, Pesenti S, Wu X, Vidal H, Gow A, Le Magueresse-Battistoni B. Claudin 11 deficiency in mice results in loss of the Sertoli cell epithelial phenotype in the testis. Biol Reprod. 2010 Jan;82(1):202-13. OpArray

Montero-Moran G, Caviglia JM, McMahon D, Rothenberg A, Subramanian V, Xu Z, Lara-Gonzalez S, Storch J, Carman GM, Brasaemle DL CGI-58/ABHD5 is a coenzyme A-dependent lysophosphatidic acid acyltransferase. J Lipid Res. 2010 Apr;51(4):709-19. OLIGOS

Eurofins Genomics

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Morbach H, Dick A, Beck C, Stenzel M, Müller-Hermelink HK, Raab P, Girschick HJ. Association of chronic non-bacterial osteomyelitis with Crohn's disease but not with CARD15 gene variants. Rheumatol Int. 2010 Mar;30(5):617-21. SEQ

Mujaju C, Sehic J, Werlemark G, Garkava-Gustavsson L, Fatih M, Nybom H. Genetic diversity in watermelon (Citrullus lanatus) landraces from Zimbabwe revealed by RAPD and SSR markers. Hereditas. 2010 Aug;147(4):142-53. RAPD

Ni L, Gayet I, Zurawski S, Duluc D, Flamar AL, Li XH, O'Bar A, Clayton S, Palucka AK, Zurawski G, Banchereau J, Oh S. Concomitant activation and antigen uptake via human dectin-1 results in potent antigen-specific CD8+ T cell responses. J Immunol. 2010 Sep 15;185(6):3504-13.

Ogihara T, Chuang JC, Vestermark GL, Garmey JC, Ketchum RJ, Huang X, Brayman KL, Thorner MO, Repa JJ, Mirmira RG, Evans-Molina Liver X receptor agonists augment human islet function through activation of anaplerotic pathways and glycerolipid/free fatty acid cycling. J Biol Chem. 2010 Feb 19;285(8):5392-404.

Oyesanya RA, Greenbaum S, Dang D, Lee Z, Mukherjee A, Wu J, Dent P, Fang X. Differential requirement of the epidermal growth factor receptor for G protein-mediated activation of transcription factors by lysophosphatidic acid. Mol Cancer. 2010 Jan 14;9:8. Piersanti S, Remoli C, Saggio I, Funari A, Michienzi S, Sacchetti B, Robey PG, Riminucci M, Bianco P. Transfer, analysis, and reversion of the fibrous dysplasia cellular phenotype in human skeletal progenitors. J Bone Miner Res. 2010 May;25(5):1103-16. Pobeheim H, Munk B, Müller H, Berg G, Guebitz GM. Characterization of an anaerobic population digesting a model substrate for maize in the presence of trace metals. Chemosphere. 2010 Aug;80(8):829-36. Prosdocimo DA, Wyler SC, Romani AM, O'Neill WC, Dubyak GR. Regulation of vascular smooth muscle cell calcification by extracellular pyrophosphate homeostasis: synergistic modulation by cyclic AMP and hyperphosphatemia. Am J Physiol Cell Physiol. 2010 Mar;298(3):C702-13. Rouillon C, White MF. The XBP-Bax1 helicase-nuclease complex unwinds and cleaves DNA: implications for eukaryal and archaeal nucleotide excision repair. J Biol Chem. 2010 Apr 2;285(14):11013-22. Rudolf J, Rouillon C, Schwarz-Linek U, White MF. The helicase XPD unwinds bubble structures and is not stalled by DNA lesions removed by the nucleotide excision repair pathway. Nucleic Acids Res. 2010 Jan;38(3):931-41. Sakai T, Aoyama M, Kusakabe T, Tsuda M, Satake H. Functional diversity of signaling pathways through G protein-coupled receptor heterodimerization with a species-specific orphan receptor subtype. Mol Biol Evol. 2010 May;27(5):1097-106. Schlangen K, Miosic S, Halbwirth H. Allelic variants from Dahlia variabilis encode flavonoid 3'-hydroxylases with functional differences in chalcone 3-hydroxylase activity. Arch Biochem Biophys. 2010 Feb 1;494(1):40-5. Scruten E, Kovacs-Nolan J, Griebel PJ, Latimer L, Kindrachuk J, Potter A, Babiuk LA, Littel-van den Hurk SD, Napper S Retro-inversion enhances the adjuvant and CpG co-adjuvant activity of host defence peptide Bac2A. Vaccine. 2010 Apr 9;28(17):2945-56. Souli M, Galani I, Antoniadou A, Papadomichelakis E, Poulakou G, Panagea T, Vourli S, Zerva L, Armaganidis A, Kanellakopoulou K, Giamarellou H. An outbreak of infection due to beta-Lactamase Klebsiella pneumoniae Carbapenemase 2-producing K. pneumoniae in a Greek University Hospital: molecular characterization, epidemiology, and outcomes. Clin Infect Dis. 2010 Feb 1;50(3):364-73. Sucic S, Dallinger S, Zdrazil B, Weissensteiner R, Jørgensen TN, Holy M, Kudlacek O, Seidel S, Cha JH, Gether U, Newman AH, Ecker GF, Freissmuth M, Sitte HH. The N terminus of monoamine transporters is a lever required for the action of amphetamines. J Biol Chem. 2010 Apr 2;285(14):10924-38.

Eurofins Genomics

Phone: 1-800-688-2248 E-mail:oligo-us@eurofins.com 2211 Seminole Drive, Huntsville, AL 35805

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Sullivan CP, Seidl SE, Rich CB, Raymondjean M, Schreiber BM. Secretory phospholipase A2, group IIA is a novel serum amyloid A target gene: activation of smooth muscle cell expression by an interleukin-1 receptor-independent mechanism. J Biol Chem. 2010 Jan 1;285(1):565-75. Vasilaki E, Papadimitriou E, Tajadura V, Ridley AJ, Stournaras C, Kardassis D. Transcriptional regulation of the small GTPase RhoB gene by TGF{beta}-induced signaling pathways. FASEB J. 2010 Mar;24(3):891-905. Veale EL, Rees KA, Mathie A, Trapp S. Dominant negative effects of a non-conducting TREK1 splice variant expressed in brain. J Biol Chem. 2010 Sep 17;285(38):29295-304. Wahab T, Edvinsson B, Palm D, Lindh J. Comparison of the AF146527 and B1 repeated elements, two real-time PCR targets used for detection of Toxoplasma gondii. J Clin Microbiol. 2010 Feb;48(2):591-2. Weisse K, Brandsch C, Hirche F, Eder K, Stangl GI. Lupin protein isolate and cysteine-supplemented casein reduce calcification of atherosclerotic lesions in apoE-deficient mice. Br J Nutr. 2010 Jan;103(2):180-8. Woodward SD, Urbanova I, Nurok D, Svec F. Separation of peptides and oligonucleotides using a monolithic polymer layer and pressurized planar electrophoresis and electrochromatography. Anal Chem. 2010 May 1;82(9):3445-8. Xu J, De Jong AT, Chen G, Chow HK, Damaso CO, Schwartz Mittelman A, Shin JA. Reengineering natural design by rational design and in vivo library selection: the HLH subdomain in bHLHZ proteins is a unique requirement for DNA-binding function. Protein Eng Des Sel. 2010 May;23(5):337-46. Yang M, Chisholm JW, Soelaiman S, Shryock JC. Sulfonylureas uncouple glucose-dependence for GPR40-mediated enhancement of insulin secretion from INS-1E cells. Mol Cell Endocrinol. 2010 Feb 5;315(1-2):308-13. OLIGOS

Young ND, Campbell BE, Hall RS, Jex AR, Cantacessi C, Laha T, Sohn WM, Sripa B, Loukas A, Brindley PJ, Gasser RB. Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini. PLoS Negl Trop Dis. 2010 Jun 22;4(6):e719. NEXT GEN

Young ND, Hall RS, Jex AR, Cantacessi C, Gasser RB. Elucidating the transcriptome of Fasciola hepatica - a key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnol Adv. 2010 Mar-Apr;28(2):222-31. BIOINFORMATICS

Yu M, Bell RH, Ross EK, Lo BK, Isaac-Renton M, Martinka M, Haegert A, Shapiro J, McElwee KJ. Lichen planopilaris and pseudopelade of Brocq involve distinct disease associated gene expression patterns by microarray. J Dermatol Sci. 2010 Jan;57(1):27-36. LONG OLIGOS

Zhurina D, Zomer A, Gleinser M, Brancaccio VF, Auchter M, Waidmann MS, Westermann C, van Sinderen D, Riedel CU. Complete genome sequence of Bifidobacterium bifidum S17. J Bacteriol. 2011 Jan;193(1):301-2. NEXT GEN