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DANIEL R. ROGERS, PH.D. Assistant Professor Shields Science Center, Rm. 302 Department of Chemistry 320 Washington St. Stonehill College Easton, MA 02357 EMAIL: [email protected] PHONE: 508-565-1589 Education and Experience

Assistant Professor of Chemistry Stonehill College 2015-present Department of Chemistry Easton, MA Guest Investigator Woods Hole Oceanographic Institution 2015-present Department of Geology and Geophysics Woods Hole, MA Visiting Assistant Professor Stonehill College 2014-2015 Department of Chemistry Easton, MA Research Associate Harvard University 2013-2014 Department of Earth and Planetary Sciences Department of Organismic and Evolutionary Biology Cambridge, MA Postdoctoral Fellow Woods Hole Oceanographic Institution 2014-2015

Advisor: Dr. Virginia Edgcomb Department of Geology and Geophysics Woods Hole, MA Postdoctoral Fellow Harvard University 2010-2013

Advisor: Dr. Peter R. Girguis Department of Earth and Planetary Sciences Department of Organismic and Evolutionary Biology Cambridge, MA Ph.D., Chemical Oceanography Massachusetts Institute of Technology 2004-2010 Advisor: Dr. Karen L. Casciotti Cambridge, MA & Woods Hole Oceanographic Institution Woods Hole, MA

Dissertation: Geomicrobiology of Nitrogen in a Coastal Aquifer: Isotopic and Molecular Methods to Examine Nitrification and Denitrification in Groundwater.

International Geobiology Course Agouron

Institute 2005

Troodos Ophiolite Field School Ridge2000-National Science Foundation

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2005 Research Associate II Woods Hole Oceanographic Institution 2001-2004

Supervisor: Dr. Katrina Edwards Department of Marine Chemistry and Geochemistry Woods Hole, MA

M.S., Oceanography University of Connecticut 2001 Advisor: Dr. Pieter T. Visscher Department of Marine Sciences Groton, CT

B.S., Environmental Science University of Connecticut 1998 & Marine Science Storrs, CT

Awards and Grants NSF-Chemical Oceanography (M.K. Tivey, C. Hansel (WHOI) and Rogers, $130,287 to DR) 2017-2020 Collaborative Research: Identifying Controls on Weathering of Seafloor Massive Sulfides

NOAA Sea Grant Omnibus ($104,346, Rogers and V. Edgcomb, WHOI) 2016-2018 Understanding the impact of floating oyster aquaculture on the carbon and nitrogen flux to the sediments using natural abundance isotopic surveys and metagenomic approaches. Coastal Ocean Institute ($30k, V. Edgcomb PI, Rogers Postdoc, WHOI.) 2014-2015

Coastal Ocean Institute Graduate Fellowship - Competitive fellowship. 2007 Coastal Ocean Institute ($30k Rogers and Casciotti)- Competitive research grant. 2007 Ocean Venture Fund - Competitive research grant. 2007 Whelan Award - Competitive technology grant. 2003 Green Technology Innovation Award - Competitive technology grant. 2003 Connecticut Space Grant Consortium Travel Grant. 1999 University of Connecticut Research Foundation - Competitive research grant. 1999

Courses Taught Stonehill College, Easton, MA Spring 2017 Analytical Chemistry (CHM331) and Lab (2 sections) General Chemistry II Lab (CHM232L)

Independent Research (CHM496), Claire Farnan – Comparing UV-Vis spectrophotometry and UPLC-PDA measurements of estradiol.

Dan Stone – Calibrating the membrane inlet mass spectrometer and analyzing environmental samples. Joshua Hubbel – Quantifying functional gene expression in sediments underlying oyster aquaculture. Fall 2016

General Chemistry – Environmental Theme (CHM113), 2-sections lecture/lab Chemistry Seminar (CHM447/449) Independent Research (CHM496),

Claire Farnan – Comparing UV-Vis spectrophotometry and UPLC-PDA measurements of estradiol. Parker Dunn – Analyzing particulate nitrogen and carbon content in marine sediments. Dan Stone – Constructing a membrane inlet mass spectrometer.

Summer 2016 Stonehill Undergraduate Research Experience Daniel Stone – Quantifying anaerobic ammonium oxidation in sediments underlying oyster aquaculture.

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Janelle Shea – Developing a method for hormone quantification applicable to coastal waters. Spring 2016 Analytical Chemistry (CHM331) Advanced Chemistry Lab (CHM442)

Chemistry Seminar – (CHM447/449) Independent Research (CHM496, BIO496),

Claire Farnan – (1 credits) Developing a UPLC method for quantifying 17b-estradiol in natural waters. Janelle Shea – (1 credits) Developing a UPLC method for quantifying cortisol in natural waters. Amanda Pepe-(3 credits) Geochemical analysis of sediments collected summer of 2015.

Fall 2015 Advanced Topics in Analytical Chemistry (CHM432) General Chemistry – Environmental Theme (CHM113) Chemistry Seminar – (CHM447/449)

Independent Research (BCM496, BIO496), Alex Piscoya – (3 credits) Measuring nutrient and carbon concentration in coastal sediments. Janelle Shea – (1 credits) Developing a UPLC method for quantifying hormones in natural waters. Amanda Pepe – (3 credits) Gene expression study of nitrate reductase genes isolated from coastal

sediments. Summer 2015

Independent Research, Amanda Pepe-Field sampling, nutrient measurement and gene expression analyses. Spring 2015

Analytical Chemistry (CHM331) Analytical Chemistry Lab (CHM331) Advanced Chemistry Lab (CHM442) Chemistry Seminar – (CHM447/449) Independent Research (CHM496, BCM496, BIO496),

Alex Piscoya – (3 credits) Measuring nutrient concentration in coastal waters. Adam Amatucci – (3 credits) Electrochemical measurement of As, spectrophotometric measurement of

H2O2. Amanda Pepe – (1 credits) Gene expression study of nitrate reductase genes isolated from coastal

sediments. Fall 2014

General Chemistry – Environmental Theme (CHM113), 2-sections lecture/lab Chemistry Seminar (CHM447/449)

Invited Presentations - Teaching

Rogers, D.R. (2016) The nitrogen cycle. Guest Lecturer, Tidal Quest Summer Science School (high-school level), Waquoit Bay National Estuarine Research Reserve, Falmouth, MA.

Rogers, D.R. (2014) General Chemistry – An introduction to stoichiometry including a laboratory exercise. Teaching demonstration, Stonehill College, Easton, MA.

Rogers, D.R. (2014) The biogeochemical cycling of nitrogen. Guest Lecturer, Biogeochemistry, Boston College, Chestnut Hill, MA.

Rogers, D.R. (2013) Balanced reactions: oxidation and reduction half reactions. Guest Lecturer, Chemistry, Falmouth Academy, Falmouth, MA.

Rogers, D.R. (2012) The nitrogen cycle. Guest Lecturer, Global Biogeochemistry, Harvard University Extension School, Cambridge, MA.

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Rogers, D.R. (2011) You, Me and Nitrogen Makes Three: Bringing a current environmental issue into the classroom. Guest Instructor, Teachers on the Estuary, Waquoit Bay National Estuarine Research Reserve, Waquoit Bay, MA.

Rogers, D.R. (2005) The energy behind ecology. Guest Lecturer, Biology, Falmouth Academy, Falmouth, MA.

Rogers, D.R. (2003) Microbe-mineral interactions. Guest Instructor, Living in a Microbial World, Marine Biological Laboratory, Woods Hole, MA.

Rogers, D.R. (2002) Bacteria that breathe metals. Guest Instructor, Living in a Microbial World, Marine Biological Laboratory, Woods Hole, MA.

Invited Presentations - Research

Rogers, D.R. (2016) Is nitrogen a shell (or shellfish) game? Research Night at the Reserve, Waquoit Bay National Estuarine Research Reserve, Falmouth, MA.

Rogers, D.R. (2014) Adapting techniques and instrumentation to the field studies yields new insights into biogeochemical processes. Amherst College, Amherst, MA.

Rogers, D.R. (2014) We’re gonna need a bigger boat…or will we: How adapting techniques and instrumentation to the field can yield new insights into environmental processes. Stonehill College, Easton MA.

Rogers, D.R. (2014) Biogeochemical insights gained from linking isotope geochemistry and microbiology. University of Rhode Island, Narragansett, RI.

Rogers, D.R. (2014) Integrating high-resolution isotope geochemistry and modern microbiological techniques to quantify the linkages between, and drivers of biogeochemical cycles. Wright State University, Dayton, OH.

Rogers, D.R. (2014) Quantifying biogeochemical cycles using geochemical and microbiological matrices. University of Massachusetts, Boston, MA.

Rogers, D.R. (2012) Bust to bloom; Why nitrogen transformations are important considerations in coastal management. Cleaning Up Our Coastal Waters. Coastal Training Program, The Waquoit Bay National Estuarine Research Reserve, Waquoit, MA.

Rogers, D.R. (2011) Microbes on the frontlines: How and where microorganisms may help remove nitrogen from a coastal groundwater. The Waquoit Bay National Estuarine Research Reserve’s Science Forum, Woods Hole Oceanographic Institution, Woods Hole, MA.

Rogers, D.R. (2011) Microbial activity, physiology, and metabolism. Session Leader. Sediment Microbiology, Center for Dark Energy Biosphere Investigations, Chapel Hill, NC.

Rogers, D.R. (2003) New insights in Fe-oxidation at the seafloor. Woods Hole Oceanographic Institution, Woods Hole, MA.

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Rogers, D.R. (2001) Using electrochemical methods to monitor microbial ecology. Microbial Diversity Course, Marine Biological Laboratory.

Contributed Presentations - First Author

1. The impact of floating bag oyster aquaculture on bacterial metabolic gene expression and 2015 the rate of nitrogen removal in underlying sediments. D.R. Rogers, A. Cobban, C.

Mazur, A. Pepe and V. Edgcomb. Gordon Research Conference, Applied and Environmental Microbiology. July 12-17th Mt. Holyoke College. Poster Presentation.

2. Key Factors Influencing Rates of Heterotrophic Sulfate Reduction in Hydrothermal Massive 2015 Sulfide Deposits. D. Rogers, K. Frank, K. Rogers, J. Delaney, R. Lee, P. Girguis. Gordon

Research Conference, Chemical Oceanography. July 26-31th Holderness School, NH. Poster Presentation.

3. Ethane, Propane and Butane oxidation at a marine hydrocarbon seep: using isotopic and 2014 molecular techniques to decipher rates and pathways of microbial activity. Gordon Conference – Marine Microbes; Small Microbes Big Data, Bentley University, Waltham, MA: Poster Presentation.

4. The distribution of active carbon-fixation pathways within the dissolved and 2014 particulate-fractions at and near a deep-sea, diffuse-flow, hydrothermal vent. American Society for Microbiology General Meeting (ASM), Boston, MA: Oral Presentation.

5. Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction 2014 rates in seep sediments. American Society for Limnology and Oceanography (ASLO) Ocean Sciences Meeting, Honolulu, HI: Poster.

6. Active, thermophilic, sulfate-reducing communities on deep-sea hydrothermal deposits. 2012 Center for Dark Energy Biosphere Investigations (C-DEBI) All Hands Meeting, Marina,

CA: Poster 7. Sulfate reduction rates from communities hosted within and on massive sulfide deposits. 2012

ASLO Ocean Sciences Meeting, Salt Lake City, UT: Poster. 8. Functional roles of Archaea and Bacteria in a subterranean estuary as suggested by chemical 2009 and molecular markers. ASLO Aquatic Sciences Meeting, Nice, France: Oral presentation. 9. Microbial shifts along chemical gradients in the Waquoit Bay subterranean estuary. 2008 Marine Chemistry and Geochemistry Department Seminar (WHOI), Woods Hole, MA:

Oral presentation. 10. Denitrification RCN, Horn Point Laboratory, University of Maryland. Poster. 2008 11. Differential protein expression in Fe-amended cultures of Marinobacter aquaeolei: a view into 2005

deep-sea metabolism. NASA Astrobiology Institute, Boulder, CO: Poster. 12. The unseen iron pool: Is there a biogeochemical iron cycle in the ocean crust? 2004

ASLO Ocean Research Conference, Honolulu, HI: Oral presentation. 13. Microbial diversity and putative metabolic guilds of bare-rock communities. 2004 Dark Energy Workshop, WHOI, Woods Hole, MA: Poster. 14. Geomicrobiology of basalt weathering: The iron story. 2003

ASLO Aquatic Sciences Meeting, Salt Lake City, UT: Oral presentation. 15. A biogenic mechanism for the precipitation of CaCO3 in modern marine stromatolites. 2001

ASLO Aquatic Sciences Meeting, Albuquerque, NM: Oral presentation. 16. Feng Colloquim, University of Connecticut, Groton, CT: Oral presentation. 2000 17. Connecticut Space Grant Consortium. Poster. 2000 18. Long Island Sound Research Conference. Poster. 2000

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19. NASA Pale Blue Dot II workshop. Ames Research Center, Moffett Field, CA. Poster. 1999 Student Advisees - Research

1. Joshua Hubbel, Biochemistry, Stonehill College 2017-present 2. Parker Dunn, Chemistry, Stonehill College 2016-present 3. Dan Stone, Environmental Sci. and Engineering, Stonehill College 2016-present 4. Claire Farnan, Chemistry, Stonehill College. 2016-present 5. Janelle Shea, Biology, Stonehill College. 2015-present 6. Rebecka Bense, Geology, WHOI Summer Student Fellow (Western Washington Univ.). 2016 7. Amanda Pepe, Biology, Stonehill College. 2014-2016 8. Claudia Mazur, Geology, WHOI Summer Student Fellow (Mt Holyoke College). 2015 9. Alexandra Piscoya, Biochemistry/Neuroscience, Stonehill College. 2014-2015 10. Adam Amatucci, Chemsitry, Stonehill College. 2014-2015 11. Alec Cobban, Falmouth Academy (High school), Woods Hole Oceanographic Inst. 2014-2015 12. Heather Olins, Graduate Student, Organismic & Evolutionary Biol., Harvard University. 2010-2014 13. Melissa Adams, Graduate Student, Organismic & Evolutionary Biol., Harvard University. 2010-2014 14. Amy Lorber, Undergraduate, Harvard University. 2012-2013 15. Kiana Frank, Graduate Student, Molecular and Cell Biology, Harvard University. 2010-2013 16. Alexandra Thomsen, Cambridge Ridge and Latin High School. 2011-2012 17. Tom Wu, Undergraduate, Harvard University. 2010-2011 18. Cara Santelli, Graduate Student, MIT-WHOI Joint Program. 2001-2004 19. Sheri Simmons, Graduate Student, MIT-WHOI Joint Program. 2001-2004 20. Erin Banning, Graduate Student, MIT-WHOI Joint Program. 2004 21. Peter Canovas, Graduate Student, MIT-WHOI Joint Program. 2003-2004 22. Ronnie Yoo, Undergraduate Summer Student, Smith College. 2003 23. Brad Bailey, Guest Graduate Student, Scripps Institute of Oceanography. 2002 24. Chanathip Pharino, Guest Graduate Student, MIT Civil Engineering. 2002 25. Nicholas Pinel, Graduate Student, University of Washington. 2002 26. Jesse Gunnard, Graduate Student, University of Massachusetts. 2002 27. Sara Selgrade, Undergraduate Summer Fellow. Smith College. 2002 28. Lindsay Hurt, High School Summer Student. 2002

Cruise and Field Experience

1. Little Pond, Falmouth, MA, Sediment coring, Electrochemistry, isotope pairing, 2014-present

molecular biology. 2. Mediterranean Sea, RV Oceanus. Electrochemistry, multi- and box-coring. 2009 3. Santa Barbara Basin, RV R.G. Sproul. Electrochemistry, multi- and box-coring.

2007 4. Waquoit Bay National Estuarine Reserve, MA. Coring and Groundwater sampling. 2004-

2009 5. 9°N East Pacific Rise, RV Atlantis AT11-20, Alvin Dive 4059.

2004 6. Yellowstone National Park. Microbiology of sulfur intermediates in hot springs.

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2004 7. Sea Education Association Cruise 193A SSV Corwith Cramer.

2004 8. Loihi Seamount, HI. RV KOK and DSV Pisces V. Microbial Fe-oxidation. 2003 9. Loihi Seamount, HI. RV KOK and DSV Pisces IV and V. 2002 10. Clay City, KY. Terrestrial drilling. 2001 11. Coastal Margin, Atlantic Ocean, RV Oceanus. Scientific diver.

2001 12. Mid-Atlantic Bight, RV Connecticut. ROV and electronics deployments.

2000 13. Guerrerro Negro, Baja California Sur, Mexico. Microbiology.

1999 14. Santa Barbara Basin, RV Robert Gordon Sproul. Electrochemistry and coring.

1999 15. Environmental Consultant, Shennecossett Marina. Benthic surveys. 1999 16. Scientific diver. Equipment deployment and recovery. 1999-2001

Professional Activities and Collaborations

Earth and Planetary Sciences Steering Committee, Stonehill College. 2015-present

Environmental Studies Steering Committee, Stonehill College. 2015-present

Search Committee for Assist. Professor in Environmental Science, Stonehill College. 2015

Peer-reviewer: Limnology and Oceanography, Geobiology, Environmental Microbiology, Applied and Environmental Microbiology, Frontiers in Microbiology and Water Research.

Memberships: American Society for Limnology and Oceanography (ASLO), American Chemical Society (ACS), American Society for Microbiology (ASM), International Society for Microbial Ecology (ISME).

One Cape Summit, Hyannis, MA, Participant 2016

Cape Coastal Conference, Hyannis, MA, Participant 2016

Climate Change Communication Training, Falmouth, MA, Participant 2016

EarthCube Workshop, University of Rhode Island, Participant. 2013

Center for Dark Energy Biosphere Investigations (C-DEBI) RCN, Deep Biosphere Sediment 2011 Microbiology, University of North Carolina, Chapel Hill, NC. Microbial activity, physiology, and metabolism. Session Leader.

ASLO Ocean Sciences Meeting, Honolulu, HI. (SS4.10) Geomicrobiology of Hydrothermal Vents. 2003 Session Co-Chair.

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Outreach Guest Lecturer for Summer School of Science, grades 9-12. Falmouth, MA. 2016 Guest Lecturer for College Academy-Marine Biology Course, grades 3-8. Easton, MA. 2015 Classroom presentations KC Coombs/Quashnet Elementary School. Mashpee, MA 2011-present Science Fair Judge, Falmouth Academy (grades 8-12), Falmouth, MA. 2007-2010, 2012, 2013 School Board (Chair 2008-10), Heritage Christian Academy, Falmouth, MA. 2006-2012 Science Fair Judge, Heritage Christian Academy (grades 6 - 8). 2003-2010 Guest Lecturer, Heritage Christian Academy. 2003, 2006, 2008 and 2010 Volunteer SCUBA diver, Mystic Marine Life Aquarium, Mystic CT. 2000-2001 Teaching Assistant (Marine Microbiology), University of Connecticut, Storrs, CT. 2000 Director, Taste Touch and Smell of Science, Director (k-12 outreach), Groton, CT. 2000 Co-organizer, Christmas Food and Clothing Drive, Groton, CT. 1999 Teacher, Eastern Point Science Club (k-12 outreach), Groton, CT. 1998, 1999 Teacher, Kids Are Scientists Too (elementary school outreach), Storrs, CT. 1997

Collaborators within the past 48 months Joan Bernhard (Woods Hole Oceanographic Institution, WHOI), Arpita Bose (Washington University, St. Louis), Virginia Edgcomb (WHOI), Kiana Frank (University of Hawaii), Collen Hansel (WHOI), Julie Huber (Marine Biological Laboratory, MBL), David Johnston (Harvard University, HU), Scott Lindell (MBL), Julie Meyer (MBL), Ann Pearson (HU), Christina Preston (Monterey Bay Aquarium Reseach Institution, MBARI), Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences), Karyn Rogers (Rochester Polytechnical Institute), Meg Tivey (WHOI).

Publications - Peer Reviewed (* denotes equal contribution) Tang, T., Mohr, W., Sattin, S.R., Rogers, D.R., Girguis, P.R. and A. Pearson (2016). Geochemically-distinct

carbon isotope distributions in Allochromatium vinosum DSM 180T grown photoautotrophically and photoheterotrophically. Geobiology.

Frank, K.L., Rogers, K.L., Rogers, D.R., Johnston, D.T., and P.R. Girguis (2015). Key factor influencing rates

of heterotrophic sulfate reduction in hydrothermal massive sulfide deposits. Frontiers in Microbiology. 6:1449.

Orcutt, B.N., Sylvan, J.B., Rogers, D.R., Delaney, J, Lee, R.W. and P.R. Girguis (2015). Carbon fixation by

basalt-hosted microbial communities. Frontiers in Microbiology. 6:1-14. Rogers, D.R.*, Bose, A.*, Adams, M.M., Joye, S.B. and Girguis, P.R. (2013). Geomicrobiological linkages

between short-chain alkane consumption and sulfate reduction rates in seep sediments. Frontiers in Aquatic Microbiology. DOI=10.3389/fmicb.2013.00386.

Olins, H.C., Rogers, D.R., Frank, K.L., Vidoudez, C., and Girguis, P.R. (2013). Assessing the influence of physical, geochemical, and biological factors on anaerobic microbial primary productivity within hydrothermal vent chimneys. Geobiology 11(3):279-293.

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Frank, K.L., Rogers, D.R., Olins, H.C., Vidoudez, C., and Girguis, P.R. (2013). Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents, Juan de Fuca Ridge. The ISME Journal 7(7):1391-1401.

Sáenz, J.P., Hopmans, E.C., Rogers, D., Henderson, P.B., Charette, M.A., Schouten, S., Casciotti, K.L., Sinninghe Damsté, J.S. and Eglinton, T.I. (2012). Distribution of anaerobic ammonia-oxidizing bacteria in a subterranean estuary. Marine Chemistry 136–137(0):7-13.

Rogers, D.R. and Casciotti, K.L. (2010) Quantitative and phylogenetic examination of the ammonia-oxidizing community within a subterranean estuary. Applied and Environmental Microbiology 76(24):7938-7948.

Edwards, K.J., Bach, W., McCollom, T.M. and Rogers, D.R. (2004) Neutrophilic iron-oxidizing bacteria in the ocean: Habitats, diversity, and roles in mineral deposition, rock alteration, and biomass production in the deep-sea. Geomicrobiology Journal 21:393-404.

Rogers, D.R., Santelli, C.M. and Edwards, K.J. (2003) Geomicrobiology of deep-sea deposits: Estimating community diversity from low-temperature seafloor rocks and minerals. Geobiology 1:109-117.

Edwards, K.J., Rogers, D.R., Wirsen, C.O. and McCollom, T.M. (2003) Isolation and Characterization of Novel Psychrophilic, Neutrophilic, Fe-Oxidizing, Chemolithoautotrophic {alpha}- and {gamma}-Proteobacteria from the Deep Sea. Applied and Environmental Microbiology 69:2906-2913.

Edwards, K.J., Bach, W. and Rogers, D.R. (2003) Geomicrobiology of the Ocean Crust: A Role for Chemoautotrophic Fe-Bacteria. Biological Bulletin 204:180-185.

Visscher, P.T., Baumgartner, L.K., Buckley, D.H., Rogers, D.R., Hogan, M.E., Raleigh, C.D., Turk, K.S. and Des Marais, D.J (2003) Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures. Environmental Microbiology 5(4):296-308.

Thor, P., Dam, H.G. and Rogers, D.R. (2003) Fate of organic carbon released from decomposing copepod fecal pellets in relation to bacterial production and ectoenzymatic activity. Aquatic Microbial Ecology 33:279-288.

Visscher, P., Hoeft, S., Surgeon, T., Rogers, D.R., Bebout, B., Thompson, J.J. and Reid, R. (2002) Microelectrode measurements in stromatolites: Unraveling the Earth's past? in Taillefert, M., and Rozan, T., eds., Environmental Electrochemistry: Analyses of Trace Element Biogeochemistry.: ACS Symposium Series: Washington, DC, Oxford University Press.

Hoeft, S.E.; Rogers, D.R. and Visscher, P.T. (2000) Metabolism of methyl bromide and dimethyl sulfide by marine bacteria isolated from coastal and open waters. Aquatic Microbial Ecology 21:221-230.

Tang, K.W., Rogers, D.R., Dam, H.G. and Visscher, P.T. (2000) Seasonal distribution of DMSP among seston, dissolved matter and zooplankton along a transect in the Long Island Sound estuary. Marine Ecology Progress Series 206:1-11.