croFGD manual for users

Homepage

update news

visitor tracking

Search one gene for detailed information

Gene detail information

functional annotation and data source

top three hits in Arabidopsis

top300 PCC genelist, PPI, miRNA-target and link to

correspoding network

functional module including the query gene

location information

Gbrowser and UCSC visulization

DNA, cds, transcript and protein sequence

gene ontology

gene family and subfamily

Gene detail information

KEGG pathway predicted by GhostKOALA

plantCyc pathway

Pfam domain

bar chart according to FPKM in all samples

Network input one gene or genelist

global network tissue-preferential analysis treat-response analysis

further analysis

Network compare

Network comparsion results

two network member expression profiles

Module search

Functional module search results

all functional module detailed information

Gene family

family

family members link to global network page

KEGG pathway

indole alkaloid biosynthesis

pathway member information

miRNA infor

miRNA expression profile

Gbrowser and UCSC visualization

miRNA target info

miRNA seq and struture info

miRNA location info

program select

submit sequence in fasta

parameter select

Tools: blast Blast results

Tools: motif analysis

sequence scan

motif analysis

input your interested motif

Tools: gene set enrichment analysis

choose geneset

input genelist

GSEA analysis result:

Tools: functional module enrichment analysis

module enrichment analysis result:

input genelist

parameter select

Download page

miRNA target functional modules

miRNA target network and the expression profiles of target genes