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CORONAVIRUS Preexisting and de novo humoral immunity to SARS-CoV-2 in humans Kevin W. Ng 1 * , Nikhil Faulkner 1 * , Georgina H. Cornish 1 * , Annachiara Rosa 2 * , Ruth Harvey 3 , Saira Hussain 3 , Rachel Ulferts 9 , Christopher Earl 4 , Antoni G. Wrobel 5 , Donald J. Benton 5 , Chloe Roustan 6 , William Bolland 1 , Rachael Thompson 1 , Ana Agua-Doce 7 , Philip Hobson 7 , Judith Heaney 13 , Hannah Rickman 13 , Stavroula Paraskevopoulou 13 , Catherine F. Houlihan 13,14 , Kirsty Thomson 13 , Emilie Sanchez 13 , Gee Yen Shin 13 , Moira J. Spyer 13,15 , Dhira Joshi 8 , Nicola OReilly 8 , Philip A. Walker 6 , Svend Kjaer 6 , Andrew Riddell 7 , Catherine Moore 16 , Bethany R. Jebson 17,19 , Meredyth Wilkinson 17,19 , Lucy R. Marshall 17,19 , Elizabeth C. Rosser 17,18 , Anna Radziszewska 17,18 , Hannah Peckham 17,18 , Coziana Ciurtin 17,18 , Lucy R. Wedderburn 17,19 , Rupert Beale 9 , Charles Swanton 10 , Sonia Gandhi 11 , Brigitta Stockinger 12 , John McCauley 3 , Steve J. Gamblin 5 , Laura E. McCoy 14 , Peter Cherepanov 2 , Eleni Nastouli 13,15 , George Kassiotis 1,20 Zoonotic introduction of novel coronaviruses may encounter preexisting immunity in humans. Using diverse assays for antibodies recognizing SARS-CoV-2 proteins, we detected preexisting humoral immunity. SARS-CoV-2 spike glycoprotein (S)reactive antibodies were detectable using a flow cytometrybased method in SARS-CoV-2uninfected individuals and were particularly prevalent in children and adolescents. They were predominantly of the immunoglobulin G (IgG) class and targeted the S2 subunit. By contrast, SARS-CoV-2 infection induced higher titers of SARS-CoV-2 Sreactive IgG antibodies targeting both the S1 and S2 subunits, and concomitant IgM and IgA antibodies, lasting throughout the observation period. SARS-CoV-2uninfected donor sera exhibited specific neutralizing activity against SARS-CoV-2 and SARS-CoV-2 S pseudotypes. Distinguishing preexisting and de novo immunity will be critical for our understanding of susceptibility to and the natural course of SARS-CoV-2 infection. I mmune cross-reactivity among seasonally spreading human coronaviruses (HCoVs) has long been hypothesized to provide ef- fective but transient cross-protection against distinct HCoVs ( 1, 2). To determine the de- gree of cross-reactivity between HCoVs and SARS-CoV-2, we developed a flow cytometrybased assay for SARS-CoV-2binding anti- bodies. The main target for such antibodies is the spike glycoprotein (S), which is proteolyti- cally processed into the S1 and S2 subunits, mediating target cell attachment and entry, respectively. The S1-specific CR3022 antibody stained a smaller percentage of SARS-CoV-2 Sexpressing human embryonic kidney (HEK) 293T cells and with lower intensity than COVID-19 con- valescent sera (fig. S1), indicating that polyclo- nal immunoglobulin G (IgG) antibodies targeted a wider range of epitopes naturally processed and displayed on these cells. This assay also detected SARS-CoV-2 Sreactive IgM and IgA antibodies in COVID-19 convalescent sera (fig. S2). Indeed, the presence of SARS-CoV-2 Sreactive antibodies of all three Ig classes (IgG + IgM + IgA + ) distinguished COVID-19 sera from control sera with a high degree of sen- sitivity and specificity (Fig. 1A and fig. S3). All 156 seroconverted COVID-19 patients had con- temporaneous IgG, IgM, and IgA responses to SARS-CoV-2 S throughout the observation period, with the exception of two patients who only had IgG antibodies (figs. S4 and S5). One of these patients was a bone marrow trans- plantation recipient who experienced HCoV infection 1 month before SARS-CoV-2 infec- tion (fig. S6). Unexpectedly, a small proportion of SARS-CoV-2uninfected patients sampled before or during the early spread of SARS- CoV-2 in the United Kingdom (table S1) also had SARS-CoV-2 Sbinding IgG antibodies, but not IgM or IgA antibodies (Fig. 1A), sug- gesting the presence of cross-reactive immu- nological memory. The S2 subunit exhibits a higher degree of homology among coronaviruses than S1 (fig. S7) and was likely the main target of cross- reactive antibodies. Competition with re- combinant soluble S1 or S2 at doses that blocked binding of specific monoclonal anti- bodies (fig. S8) did not affect the frequency of cells stained with COVID-19 patient sera, although the intensity of staining was re- duced by 31 and 37%, respectively (Fig. 1, B to D), indicating recognition of both S1 and S2. By contrast, soluble S2 completely abol- ished staining with SARS-CoV-2uninfected patient sera, whereas soluble S1 had no effect (Fig. 1, B to D). Thus, SARS-CoV-2uninfected patient sera cross-react with SARS-CoV-2 S2, and COVID-19 patient sera additionally recognize S1. SARS-CoV-2 Sreactive IgG antibodies were detected by flow cytometry in five of 34 SARS- CoV-2uninfected individuals with HCoV infection confirmed by reverse transcriptionquantitative polymerase chain reaction, as well as in one of 31 individuals without re- cent HCoV infection (Fig. 2A and fig. S4A). This suggested that cross-reactivity may have persisted from earlier HCoV infections rather than having been induced by the most re- cent one. To confirm antibody cross-reactivity using an independent assay, we developed enzyme- linked immunosorbent assays (ELISAs) using recombinant SARS-CoV-2stabilized trimeric S ectodomain, S1, receptor-binding domain (RBD), or nucleoprotein (N). Rates of IgG sero- positivity by SARS-CoV-2 S1coated ELISA were congruent with, but generally lower than, those by flow cytometry (fig. S9). The three SARS-CoV-2uninfected individuals with the highest cross-recognition of S by flow cytometry, plus an additional four in- dividuals, had ELISA-detectable IgG anti- bodies against the SARS-CoV-2 S ectodomain, as well as N (Fig. 2A and fig. S4, B to D). By contrast, none of the control samples had ELISA-detectable IgG antibodies against the less-conserved SARS-CoV-2 S1 or RBD (Fig. 2A and fig. S4, B to D). The prevalence of such cross-reactive anti- bodies was further examined in additional healthy donor cohorts (table S1). Among 50 SARS-CoV-2uninfected pregnant women sampled in May of 2018, five showed evidence for SARS-CoV-2 Sreactive IgG antibodies, but not IgM or IgA antibodies (Fig. 2B and fig. RESEARCH Ng et al., Science 370, 13391343 (2020) 11 December 2020 1 of 5 1 Retroviral Immunology, The Francis Crick Institute, London NW1 1AT, UK. 2 Chromatin Structure and Mobile DNA Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 3 Worldwide Influenza Centre, The Francis Crick Institute, London NW1 1AT, UK. 4 Signalling and Structural Biology Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 5 Structural Biology of Disease Processes Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 6 Structural Biology STP, The Francis Crick Institute, London NW1 1AT, UK. 7 Flow Cytometry STP, The Francis Crick Institute, London NW1 1AT, UK. 8 Peptide Chemistry, The Francis Crick Institute, London NW1 1AT, UK. 9 Cell Biology of Infection Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 10 Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 11 Neurodegeneration Biology Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 12 AhRimmunity Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 13 University College London Hospitals (UCLH) NHS Trust, London NW1 2BU, UK. 14 Division of Infection and Immunity, University College London (UCL), London WC1E 6BT, UK. 15 Department of Population, Policy and Practice, Great Ormond Street Institute for Child Health (ICH), UCL, London WC1N 1EH, UK. 16 Public Health Wales, University Hospital of Wales, Cardiff CF14 4XW, UK. 17 Centre for Adolescent Rheumatology Versus Arthritis at UCL, UCLH, Great Ormond Street Hospital (GOSH), London WC1N 3JH, UK. 18 Centre for Rheumatology Research, Division of Medicine, UCL, London, WC1E 6BT, UK. 19 UCL Great Ormond Street Institute for Child Health (ICH), UCL, London WC1N 1EH, UK. 20 Department of Medicine, Faculty of Medicine, Imperial College London, London W2 1PG, UK. *These authors contributed equally to this work. Corresponding author. Email: [email protected] (G.K.); [email protected] (E.N.); [email protected] (P.C.); [email protected] (L.E.M.) on August 17, 2021 http://science.sciencemag.org/ Downloaded from

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Page 1: CORONAVIRUS Preexisting and de novo humoral immunity ......CORONAVIRUS Preexisting and de novo humoral immunity to SARS-CoV-2 in humans Kevin W. Ng 1*, Nikhil Faulkner1*, Georgina

CORONAVIRUS

Preexisting and de novo humoral immunityto SARS-CoV-2 in humansKevin W. Ng1*, Nikhil Faulkner1*, Georgina H. Cornish1*, Annachiara Rosa2*, Ruth Harvey3,Saira Hussain3, Rachel Ulferts9, Christopher Earl4, Antoni G. Wrobel5, Donald J. Benton5,Chloe Roustan6, William Bolland1, Rachael Thompson1, Ana Agua-Doce7, Philip Hobson7,Judith Heaney13, Hannah Rickman13, Stavroula Paraskevopoulou13, Catherine F. Houlihan13,14,Kirsty Thomson13, Emilie Sanchez13, Gee Yen Shin13, Moira J. Spyer13,15, Dhira Joshi8, Nicola O’Reilly8,Philip A. Walker6, Svend Kjaer6, Andrew Riddell7, Catherine Moore16, Bethany R. Jebson17,19,Meredyth Wilkinson17,19, Lucy R. Marshall17,19, Elizabeth C. Rosser17,18, Anna Radziszewska17,18,Hannah Peckham17,18, Coziana Ciurtin17,18, Lucy R. Wedderburn17,19, Rupert Beale9, Charles Swanton10,Sonia Gandhi11, Brigitta Stockinger12, John McCauley3, Steve J. Gamblin5, Laura E. McCoy14†,Peter Cherepanov2†, Eleni Nastouli13,15†, George Kassiotis1,20†

Zoonotic introduction of novel coronaviruses may encounter preexisting immunity in humans. Usingdiverse assays for antibodies recognizing SARS-CoV-2 proteins, we detected preexisting humoralimmunity. SARS-CoV-2 spike glycoprotein (S)–reactive antibodies were detectable using a flowcytometry–based method in SARS-CoV-2–uninfected individuals and were particularly prevalent inchildren and adolescents. They were predominantly of the immunoglobulin G (IgG) class and targetedthe S2 subunit. By contrast, SARS-CoV-2 infection induced higher titers of SARS-CoV-2 S–reactiveIgG antibodies targeting both the S1 and S2 subunits, and concomitant IgM and IgA antibodies,lasting throughout the observation period. SARS-CoV-2–uninfected donor sera exhibited specificneutralizing activity against SARS-CoV-2 and SARS-CoV-2 S pseudotypes. Distinguishing preexistingand de novo immunity will be critical for our understanding of susceptibility to and the naturalcourse of SARS-CoV-2 infection.

Immune cross-reactivity among seasonallyspreading human coronaviruses (HCoVs)has long been hypothesized to provide ef-fective but transient cross-protection againstdistinct HCoVs (1, 2). To determine the de-

gree of cross-reactivity between HCoVs andSARS-CoV-2, we developed a flow cytometry–based assay for SARS-CoV-2–binding anti-bodies. The main target for such antibodies isthe spike glycoprotein (S), which is proteolyti-cally processed into the S1 and S2 subunits,mediating target cell attachment and entry,respectively.The S1-specific CR3022 antibody stained a

smaller percentage of SARS-CoV-2 S–expressinghuman embryonic kidney (HEK) 293T cellsand with lower intensity than COVID-19 con-valescent sera (fig. S1), indicating that polyclo-nal immunoglobulinG (IgG) antibodies targeteda wider range of epitopes naturally processedand displayed on these cells. This assay alsodetected SARS-CoV-2 S–reactive IgM and IgAantibodies in COVID-19 convalescent sera

(fig. S2). Indeed, the presence of SARS-CoV-2S–reactive antibodies of all three Ig classes(IgG+IgM+IgA+) distinguished COVID-19 serafrom control sera with a high degree of sen-sitivity and specificity (Fig. 1A and fig. S3). All156 seroconverted COVID-19 patients had con-temporaneous IgG, IgM, and IgA responsesto SARS-CoV-2 S throughout the observationperiod, with the exception of two patients whoonly had IgG antibodies (figs. S4 and S5). Oneof these patients was a bone marrow trans-plantation recipient who experienced HCoVinfection 1 month before SARS-CoV-2 infec-tion (fig. S6). Unexpectedly, a small proportionof SARS-CoV-2–uninfected patients sampledbefore or during the early spread of SARS-CoV-2 in the United Kingdom (table S1) alsohad SARS-CoV-2 S–binding IgG antibodies,but not IgM or IgA antibodies (Fig. 1A), sug-gesting the presence of cross-reactive immu-nological memory.The S2 subunit exhibits a higher degree of

homology among coronaviruses than S1 (fig.

S7) and was likely the main target of cross-reactive antibodies. Competition with re-combinant soluble S1 or S2 at doses thatblocked binding of specific monoclonal anti-bodies (fig. S8) did not affect the frequencyof cells stained with COVID-19 patient sera,although the intensity of staining was re-duced by 31 and 37%, respectively (Fig. 1, Bto D), indicating recognition of both S1 andS2. By contrast, soluble S2 completely abol-ished staining with SARS-CoV-2–uninfectedpatient sera, whereas soluble S1 had no effect(Fig. 1, B to D). Thus, SARS-CoV-2–uninfectedpatient sera cross-react with SARS-CoV-2S2, and COVID-19 patient sera additionallyrecognize S1.SARS-CoV-2 S–reactive IgG antibodies were

detected by flow cytometry in five of 34 SARS-CoV-2–uninfected individuals with HCoVinfection confirmed by reverse transcription–quantitative polymerase chain reaction, aswell as in one of 31 individuals without re-cent HCoV infection (Fig. 2A and fig. S4A).This suggested that cross-reactivity may havepersisted from earlier HCoV infections ratherthan having been induced by the most re-cent one.To confirm antibody cross-reactivity using

an independent assay, we developed enzyme-linked immunosorbent assays (ELISAs) usingrecombinant SARS-CoV-2–stabilized trimericS ectodomain, S1, receptor-binding domain(RBD), or nucleoprotein (N). Rates of IgG sero-positivity by SARS-CoV-2 S1–coated ELISAwere congruent with, but generally lowerthan, those by flow cytometry (fig. S9). Thethree SARS-CoV-2–uninfected individualswith the highest cross-recognition of S byflow cytometry, plus an additional four in-dividuals, had ELISA-detectable IgG anti-bodies against the SARS-CoV-2 S ectodomain,as well as N (Fig. 2A and fig. S4, B to D). Bycontrast, none of the control samples hadELISA-detectable IgG antibodies against theless-conserved SARS-CoV-2 S1 or RBD (Fig. 2Aand fig. S4, B to D).The prevalence of such cross-reactive anti-

bodies was further examined in additionalhealthy donor cohorts (table S1). Among 50SARS-CoV-2–uninfected pregnant womensampled in May of 2018, five showed evidencefor SARS-CoV-2 S–reactive IgG antibodies, butnot IgM or IgA antibodies (Fig. 2B and fig.

RESEARCH

Ng et al., Science 370, 1339–1343 (2020) 11 December 2020 1 of 5

1Retroviral Immunology, The Francis Crick Institute, London NW1 1AT, UK. 2Chromatin Structure and Mobile DNA Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 3WorldwideInfluenza Centre, The Francis Crick Institute, London NW1 1AT, UK. 4Signalling and Structural Biology Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 5Structural Biology of DiseaseProcesses Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 6Structural Biology STP, The Francis Crick Institute, London NW1 1AT, UK. 7Flow Cytometry STP, The Francis CrickInstitute, London NW1 1AT, UK. 8Peptide Chemistry, The Francis Crick Institute, London NW1 1AT, UK. 9Cell Biology of Infection Laboratory, The Francis Crick Institute, London NW1 1AT, UK.10Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 11Neurodegeneration Biology Laboratory, The Francis Crick Institute, London NW11AT, UK. 12AhRimmunity Laboratory, The Francis Crick Institute, London NW1 1AT, UK. 13University College London Hospitals (UCLH) NHS Trust, London NW1 2BU, UK. 14Division of Infectionand Immunity, University College London (UCL), London WC1E 6BT, UK. 15Department of Population, Policy and Practice, Great Ormond Street Institute for Child Health (ICH), UCL, LondonWC1N 1EH, UK. 16Public Health Wales, University Hospital of Wales, Cardiff CF14 4XW, UK. 17Centre for Adolescent Rheumatology Versus Arthritis at UCL, UCLH, Great Ormond StreetHospital (GOSH), London WC1N 3JH, UK. 18Centre for Rheumatology Research, Division of Medicine, UCL, London, WC1E 6BT, UK. 19UCL Great Ormond Street Institute for Child Health (ICH),UCL, London WC1N 1EH, UK. 20Department of Medicine, Faculty of Medicine, Imperial College London, London W2 1PG, UK.*These authors contributed equally to this work.†Corresponding author. Email: [email protected] (G.K.); [email protected] (E.N.); [email protected] (P.C.); [email protected] (L.E.M.)

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Ng et al., Science 370, 1339–1343 (2020) 11 December 2020 2 of 5

Fig. 1. Flow cytometric detection and specificity of antibodies reactive with SARS-CoV-2 S. (A) Detection ofIgG, IgA, and IgM in five individuals from each indicated group. IgM levels are indicated by a heatmap. (B to D) Inhibitionof SARS-CoV-2 S binding of sera from SARS-CoV-2–infected (SARS-CoV-2+, n = 10) or SARS-CoV-2–uninfected(SARS-CoV-2− HCoV+, n = 6) patients by soluble S1 or S2. (B) Flow cytometry profile of one representative patientper group. (C) Mean frequency of positive cells. *P = 0.015; **P = 0.006, one-way analysis of variance (ANOVA)on ranks. (D) Mean staining intensity [mean fluorescence intensity (MFI) of sample as a percentage of negativecontrol MFI]. In (C) and (D), dots represent individual samples from one of three similar experiments.

Fig. 2. Prevalence ofSARS-CoV-2 S–cross-reactive antibodiesdetected by differentmethods. (A) Flowcytometry and ELISAresults for each sample incohorts A and C to E listedin table S1. (B) Flowcytometry and ELISAresults for serum samplesfrom SARS-CoV-2–uninfected pregnantwomen. (C to E) SARS-CoV-2 S–cross-reactiveantibodies in healthy chil-dren and adolescents.(C) Representative flowcytometry profiles of sero-negative donors (Negative)or COVID-19 patients(Positive) and of SARS-CoV-2–uninfected adoles-cents with SARS-CoV-2cross-reactive antibodies.(D) Frequency of cellsstained with all three anti-body classes (IgG+IgM+IgA+)or only with IgG (IgG+)ranked by their IgG+IgM+IgA+

frequency. The dashedline denotes the assaysensitivity cutoff. (E) Flowcytometry and ELISAresults for each sample. (F) Prevalence of SARS-CoV-2 S–cross-reactive antibodies in the indicated age groups (line) and frequency of cells that stained only with IgG(dots) in all samples for which the date of birth was known. The heatmaps in (A), (B), and (E) represent the quartile values above each assay’s technical cutoff.

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S10). In a separate cohort of 101 SARS-CoV-2–uninfected donors sampled in May of 2019,three had SARS-CoV-2 S–reactive IgG anti-bodies (fig. S11) that did not correlate withantibodies to the diverse viruses and bacte-ria also present in several of these samples.

SARS-CoV-2 S–reactive IgM and IgA werealso detected in two of these donors, albeit atconsiderably lower levels than in COVID-19patients (fig. S11), suggestive of recent or on-going response. In an additional cohort of 13donors recently infectedwithHCoVs, only one

had SARS-CoV-2 S–reactive IgG antibodies,and these were at very low levels (fig. S12).This suggested that their emergence was notsimply a common transient event after eachHCoV infection in this age group (median age51 years; table S1). Instead, given that HCoV-reactive antibodies are present in virtually alladults (3–5), the rarity of SARS-CoV-2 S cross-reactivity (16 of 302; 5.29%) indicates addi-tional requirements such as random B cellreceptor repertoire focusing or frequency ofHCoV infection rather than time since the lastHCoV infection. Indeed, the frequency of HCoVinfection displays a characteristic age dis-tribution, being the highest in children andadolescents (1, 4–8). We therefore examineda cohort of younger SARS-CoV-2–uninfectedhealthy donors (age 1 to 16 years; table S1)sampled between 2011 and 2018. At least 21of these 48 donors had detectable levels ofSARS-CoV-2 S–reactive IgG antibodies (Fig. 2,C to E), whereas only one of an additional co-hort of 43 young adults (age 17 to 25 years; tableS1) had such antibodies (Fig. 2F). Staining withsera from SARS-CoV-2–uninfected childrenand adolescents was specific to HEK293T cellsexpressing SARS-CoV-2 S, but not the unre-lated HERV-K113 envelope glycoprotein, andwas outcompeted by soluble SARS-CoV-2 S2(fig. S13). The prevalence of SARS-CoV-2 S–reactive IgG antibodies peaked at 62% be-tween 6 and 16 years of age (Fig. 2F), whenHCoV seroconversion in this age group alsopeaks (3, 4, 6, 7), and was significantly higherthan in adults (P < 0.00001, Fisher’s exact test).To determine the potential consequences

of antibody cross-reactivity, we examinedthe ability of preexisting antibodies to inhibitSARS-CoV-2 entry intoHEK293T cells (fig. S14and supplementary text). Although not ex-pected to directly inhibit RBD-mediated cellattachment, S2-targeting antibodies that canneutralize SARS-CoV-2 have recently beendiscovered (9, 10). HEK293T cell infectionwith SARS-CoV-2 S pseudotypes was efficientlyinhibited by sera from seroconverted (Ab+)COVID-19 patients, but not from those whohad not yet seroconverted (Ab−) (Fig. 3A). SerafromSARS-CoV-2–uninfecteddonorswith SARS-CoV-2 S–reactive antibodies also neutralizedthese pseudotypes, whereas none of the seraneutralized vesicular stomatitis virus (VSV)glycoprotein pseudotypes (Fig. 3A). Comparableneutralization of SARS-CoV-2 S pseudotypeswas also observed with sera from SARS-CoV-2–uninfected adolescents (Fig. 3A). Moreover,most of the sera from SARS-CoV-2–uninfecteddonors with flow cytometry–detectable cross-reactive antibodies also neutralized authen-tic SARS-CoV-2 infection of Vero E6 cells,albeit on average less potently than COVID-19 patient sera (Fig. 3B). By contrast, serafrom SARS-CoV-2–uninfected patients with-out cross-reactive antibodies exhibited no

Ng et al., Science 370, 1339–1343 (2020) 11 December 2020 3 of 5

Fig. 3. Neutralization of SARS-CoV-2 S pseudotypes and authentic SARS-CoV-2 by SARS-CoV-2–infected and –uninfected patient sera. (A) Inhibition of transduction efficiency of SARS-CoV-2 S or VSVgpseudotypes by adult COVID-19 patients who seroconverted (SARS-CoV-2+ Adults Ab+) or not (SARS-CoV-2+

Adults Ab−) and SARS-CoV-2–uninfected adult donors (SARS-CoV-2− Adults Ab+) or children and adolescentdonors (SARS-CoV-2− Children/Adolescents Ab+) with SARS-CoV-2 S–binding antibodies. Each line isan individual serum sample. (B) Authentic SARS-CoV-2 neutralization titers of sera from the same donors asin (A), as well as SARS-CoV-2–uninfected donors without SARS-CoV-2 S–binding antibodies (Ab−). Dotsrepresent individual samples. *P = 0.037; **P = 0.014; ns, not significant by one-way ANOVA on ranks.

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neutralizing activity (Fig. 3B). Antiviral anti-bodies may also enhance viral entry by Fcreceptor–mediated antibody-dependent en-hancement. However, entry of SARS-CoV-2 Spseudotypes was not enhanced by eitherCOVID-19 patient sera or SARS-CoV-2–uninfected patient sera in FcgRIIA-expressingK-562 cells (fig. S15).Collectively, these findings highlight func-

tionally relevant antigenic epitopes conservedwithin the S2 subunit. Over its entire length,SARS-CoV-2 S exhibits marginally closer ho-mology with the S proteins of the betacorona-viruses HCoV-OC43 and HCoV-HKU1 thanwith the alphacoronavirusesHCoV-NL63 andHCoV-229E (fig. S16A). To probe shared epi-topes, we constructed overlapping peptidearrays spanning the last 743 amino acids ofSARS-CoV-2 S (fig. S16B). Multiple putativeepitopes were differentially recognized by serawith cross-reactive antibodies (Ab+), were rea-sonably conserved, and most mapped to thesurface of S2 (Fig. 4, A and B, and table S2). Anepitope overlapping the S2 fusion peptide wasalso recently identified as being cross-reactive

with the corresponding peptides from HCoV-OC43 and HCoV-229E (11). Cross-reactivitywith the identified epitopes was further sup-ported by ELISAs coated with synthetic pep-tides (fig. S17).As expected (3–5), reactivity with one or

moreHCoVs was detectable by flow cytometryin all sera (Fig. 4D and fig. S18). However, IgGand IgA reactivity against HCoVs was higherin SARS-CoV-2–uninfected adults with SARS-CoV-2–reactive IgG compared with those with-out (P = 1.4 × 10–6 for IgG and P = 0.017 for IgA,Student’s t test) and in SARS-CoV-2–uninfectedchildren or adolescents with SARS-CoV-2–reactive IgG comparedwith thosewithout (P=0.010 for IgG and P = 0.021 for IgA, Student’st test) (Fig. 4D), supporting a direct link be-tween the two. Accordingly, IgG reactivityagainst each HCoV type was independentlycorrelated with the presence of SARS-CoV-2–reactive antibodies (Fig. 4D).Our results from multiple independent as-

says demonstrate the presence of preexistingantibodies recognizing SARS-CoV-2 in unin-fected individuals. Identification of conserved

epitopes in S2 targeted by neutralizing anti-bodies may hold promise for a universal vac-cine protecting against current as well as futureCoVs. Together with preexisting T cell (12–14)and B cell (10, 15) memory, antibody cross-reactivity between seasonal HCoVs and SARS-CoV-2 may have important ramificationsfor natural infection. Epidemiological studiesof HCoV transmission suggest that cross-protective immunity is unlikely to be steriliz-ing or long-lasting (8), which is also supportedby repeated reinfection (2, 16). Nevertheless,prior immunity induced by one HCoV can re-duce the transmission of homologous andheterologousHCoVs and ameliorate the symp-toms when transmission is not prevented(1, 2). A possible modification of COVID-19severity by prior HCoV infection may accountfor the age distribution of COVID-19 suscepti-bility, in which higher HCoV infection ratesin children than in adults (4, 6) correlate withrelative protection from COVID-19 (17) andmay also shape seasonal and geographicalpatterns of transmission. It is imperative thatany effect, positive or negative, of preexisting

Ng et al., Science 370, 1339–1343 (2020) 11 December 2020 4 of 5

Fig. 4. Mapping of cross-reactive epitopes inSARS-CoV-2 S. (A) Signalintensity for each over-lapping peptide along thelength of SARS-CoV-2S covered in the peptidearrays using pooled serawith (Ab+) or without (Ab−)flow cytometry–detectableSARS-CoV-2 S–reactiveantibodies. Differentiallyrecognized peaks areboxed. (B) Alignment of theamino acid sequences ofSARS-CoV-2 and HCoVS glycoproteins. Boxes indi-cate predicted core epi-topes. (C) Mapping ofpredicted epitopes targetedon the trimeric SARS-CoV-2spike. The S1 (blue) andS2 (pink) subunits of onemonomer are colored. Epi-topes are shown for onemonomer; the circleddashed line represent themembrane proximal regionnot present in the structure.(D) Left: Reactivity withthe S glycoproteins of eachHCoV of the indicatedsera with (Ab+) or without(Ab−) flow cytometry–detectable SARS-CoV-2S–reactive antibodies as determined by flow cytometry. Each column is an individual sample. Rows depict the staining for each antibody class. Right: Correlationcoefficients between percentages of IgG staining for SARS-CoV-2 S and IgG, IgM, and IgA staining for each HCoV S glycoprotein.

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HCoV-elicited immunity on the natural courseof SARS-CoV-2 infection be fully delineated.

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ACKNOWLEDGMENTS

We thank L. James and J. Luptak for the SARV CoV2 N expressionconstruct and M. Pizzato for the SARS CoV2 S cDNA; theentire CRICK COVID-19 Consortium; the Cell Services and HighThroughput Screening facilities at the Francis Crick Institute andUCLH Biochemistry (A. Goyale and C. Wilson); and M. Bennetand S. Caidan for training and support in the high-containmentlaboratory. Funding: This work was supported by the Centreof Excellence Centre for Adolescent Rheumatology VersusArthritis (grant no. 2159), the Great Ormond Street Children’sCharity, CureJM Foundation, the NIHR Biomedical ResearchCentres at GOSH and UCLH, and by the Francis Crick Institute,which receives its core funding from Cancer Research UK, the UKMedical Research Council, and the Wellcome Trust. Authorcontributions: C.C., L.R.W., R.B., C.S., S.G., B.S., J.M., S.J.G.,L.E.M., P.C., E.N., and G.K. designed the experiment. K.W.N., N.F.,G.H.C., A.Ro., R.H., S.H., R.U., C.E., A.G.W., D.J.B., C.R., W.B.,R.T., A.A.-D., P.H., and D.J. performed the investigations. J.H., H.R.,S.P., C.F.H., K.T., E.S., G.Y.S., M.J.S., P.A.W., C.M., B.R.J., M.W.,L.R.M., E.C.R., A.Ra., and H.P. provided reagents and samples.L.E.M., P.C., E.N., and G.K. wrote the manuscript with contributionsfrom K.W.N., N.F., G.H.C., C.C., and L.R.W. N.O., S.K., A.Ri.,C.C., L.R.W., R.B., C.S., S.G., B.S., J.M., S.J.G., L.E.M., P.C., E.N.,and G.K. supervised the project. Competing interests: Theauthors declare no competing interests. Data and materials

availability: All data are available in the main text or thesupplementary materials. This work is licensed under a CreativeCommons Attribution 4.0 International (CC BY 4.0) license, whichpermits unrestricted use, distribution, and reproduction in anymedium, provided the original work is properly cited. To view acopy of this license, visit https://creativecommons.org/licenses/by/4.0/. This license does not apply to figures/photos/artworkor other content included in the article that is credited to athird party; obtain authorization from the rights holder beforeusing such material.

SUPPLEMENTARY MATERIALS

science.sciencemag.org/content/370/6522/1339/suppl/DC1Materials and MethodsSupplementary TextFigs. S1 to S18Tables S1 and S2References (18–40)MDAR Reproducibility Checklist

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31 July 2020; accepted 29 October 2020Published online 6 November 202010.1126/science.abe1107

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Preexisting and de novo humoral immunity to SARS-CoV-2 in humans

McCauley, Steve J. Gamblin, Laura E. McCoy, Peter Cherepanov, Eleni Nastouli and George KassiotisPeckham, Coziana Ciurtin, Lucy R. Wedderburn, Rupert Beale, Charles Swanton, Sonia Gandhi, Brigitta Stockinger, JohnMoore, Bethany R. Jebson, Meredyth Wilkinson, Lucy R. Marshall, Elizabeth C. Rosser, Anna Radziszewska, Hannah

CatherineSanchez, Gee Yen Shin, Moira J. Spyer, Dhira Joshi, Nicola O'Reilly, Philip A. Walker, Svend Kjaer, Andrew Riddell, Hobson, Judith Heaney, Hannah Rickman, Stavroula Paraskevopoulou, Catherine F. Houlihan, Kirsty Thomson, EmilieEarl, Antoni G. Wrobel, Donald J. Benton, Chloe Roustan, William Bolland, Rachael Thompson, Ana Agua-Doce, Philip Kevin W. Ng, Nikhil Faulkner, Georgina H. Cornish, Annachiara Rosa, Ruth Harvey, Saira Hussain, Rachel Ulferts, Christopher

originally published online November 6, 2020DOI: 10.1126/science.abe1107 (6522), 1339-1343.370Science 

, this issue p. 1339; see also p. 1272Sciencethe age distribution of COVID-19 susceptibility.and adolescents generally have higher hCoV infection rates and a more diverse antibody repertoire, which may explainadolescents were positive for these antibodies compared with adults. This pattern may be due to the fact that children

uninfected children and−SARS-CoV-2 and SARS-CoV-2 S pseudotypes. A much higher percentage of SARS-CoV-2uninfected patients showed specific neutralizing activity against both−subunits. The anti-S2 antibodies from SARS-CoV-2

Wilson). By contrast, COVID-19 patients generated IgA, IgG, and IgM antibodies that recognized both the S1 and S2 that could cross-react with the S2 subunit of the SARS-CoV-2 spike protein (see the Perspective by Guthmiller and

uninfected individuals, a small proportion had circulating immunoglobulin G (IgG) antibodies−cohort of 350 SARS-CoV-2 report that in a et al.cross-protection against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Ng

Immunological memory after infection with seasonal human coronaviruses (hCoVs) may potentially contribute toAntibodies predating infection

ARTICLE TOOLS http://science.sciencemag.org/content/370/6522/1339

MATERIALSSUPPLEMENTARY http://science.sciencemag.org/content/suppl/2020/11/05/science.abe1107.DC1

CONTENTRELATED

http://science.sciencemag.org/content/sci/370/6522/1272.fullhttp://stm.sciencemag.org/content/scitransmed/12/557/eabc5332.fullhttp://stm.sciencemag.org/content/scitransmed/12/555/eabc9396.fullhttp://stm.sciencemag.org/content/scitransmed/12/564/eabd5487.fullhttp://stm.sciencemag.org/content/scitransmed/12/550/eabc3539.full

REFERENCES

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