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Comparison between old generation and new generation of
sequencing machines
Review over the sequencing process
Genome sequencing projectHuman genome
Genome sequencing project
•Shot gun method
•DNA library
•Sequencing
•Assembly
Efficiency of old generation of DNA sequencer
•How many bases it can sequence and how long it takes?
Now with new generation
•You can sequence bacterial genome in less than a day
•Arabidopsis genome in days
•Human genome in less than 3 weeks
Prepare the library
Nebulizing the DNA
Nebulizing the DNA
•DNA is fragmented into small sizes
•50 bp-1Kbp
•Is it a wide range??????
How to select a narrower DNA size?
DNA size selection
Select from 500-800 bp
Repair purified nebulized DNAby end polishing
Three enzymes are used :
Extend by..………………
Remove by………………
Capping by.………………
Adaptor ligation
A : Green
B: Red and biotinylated
After Adaptor ligation
•4 products are produced
DNA immobilization
•Biotin::striptavidin interaction•Which product will be washed away ?•Which product
Will be sequenced
or non sequenced
ss DNA library formation
Predict what will happen if we add NaOH soln ? .
What you will have in the supernatant?
The final ssDNA library
PCR of DNA
Mixing the beads and DNA
•Beads contains on their surface…………
•The beads and ssDNA are mixed in
…………………PCR reaction results in
..……………Microreactors contain
………………………. Mix .
PCR preparation
4 Of 96 wells micro titter plate
DNA amplification
DNA orientation on the beads
•The beads contain DNA coplementary to …………………. Side .
•The B adaptor will be ……….., the A adaptor will be……………
Isolation of the positive amplified DNA
Separation of amplified DNA
•Magnetic particle concentrator
Sequencing reaction Another PCR
After this sequencing the beads will be added onto the slide
Titanium slide
One bead goes in one well on the titanium slide and then this slide will
be placed for sequencing