Clustering and Probability (Chap 7)

Review from Last Lecture

Defined the K-means problem for formalizing the notion of clustering.

Discussed the K-means algorithm.

Noted that the K-means algorithm was “quite good” in discovering “concepts” from data (based on features).

Noted the important distinction between “attributes” and “features”.

Example of K-means -1

Measure 1 Measure 2

Patient 1 1 1

Patient 2 2 1

Patient 3 3 4

Patient 4 4 5

Let initial centroids be C1 = (1,1) and C2 = (2,1)

Example of K-means-2

Measure 1

Measure 2

Dist to C1 (1,1)

Dist to C2 (2,1)

nearest

Patient 1 1 1 0 1 C1

Patient 2 2 1 1 0 C2

Patient 3 3 4 3.6 3.16 C2

Patient 4 4 5 5 4.47 C2

C1: = (1,1); C2 = ((2+3+4)/3, (1+4+5)/3)) = (3,3.33)

Example of K-means-3

Measure1

Measure2

Dist to C1 (1,1)

Dist to C2 (3,3.33)

nearest

Patient 1

1 1 0 3.07 C1

Patient 2

2 1 1 2.54 C1

Patient 3

3 4 3.6 0.67 C2

Patient 4

4 5 5 2.10 C2

C1: = ((1+2)/2, (1+1)/2) = (1.5,1); C2 = ((3 +4)/2), (4+5)/2) = (3.5, 4.5)

Example of K-means-4

Measure1

Measure2

Dist to C1 (1.5,1)

Dist to C2 (3.5.4.5)

nearest

Patient 1

1 1 0.5 4.3 C1

Patient 2

2 1 0.5 3.8 C1

Patient 3

3 4 3.35 0.70 C2

Patient 4

4 5 4.61 1.59 C2

C1: = ((1+2)/2, (1+1)/2) = (1.5,1); C2 = ((3 +4)/2), (4+5)/2) = (3.5, 4.5)

Example: 2 Clusters

c

c

c

c

A(-1,2) B(1,2)

C(-1,-2) D(1,-2)(0,0)

K-means Problem: Solution is (0,2) and (0,-2) and the clusters are {A,B} and{C,D}

K-means Algorithm: Suppose the initial centroids are (-1,0) and (1,0) then{A,C} and {B,D} end up as the two clusters.

4

2

Several other issues regarding clustering

How do you select the initial centroids?

How do you select the right number of clusters ?

How do you deal with non-Euclidean distance/similarity measures ?

Other approaches (like hierarchical, spectral etc.)

Curse of high-dimensionality.

Question

S-Length S-Width P-Length P-Width Flower

Small Medium Small Medium A (SetosA)

Medium Medium Large Large O(Versicolor)

Medium Small Small Large I (Virginica)

Large Large Medium Small A

Large Small Medium Small ?

What should the “prediction” be for the flower ?

Prediction and Probability

When we make predictions we should assign “probabilities” with the prediction.

Examples: 20% chance it will rain tomorrow. 50% chance that the tumor is malignant. 60% chance that the stock market will fall by the end of

the week. 30% that the next president of the United States will be a

Democrat. 0.1% chance that the user will click on a banner-ad.

How do we assign probabilities to complex events.. using smart data algorithms…and counting.

Probability Basics

Probability is a deep topic…..but for most cases the rules are straightforward to apply..

Terminology Experiment Sample Space Events Probability Rules of probability Conditional Probability Bayes Rule

Probability: Sample Space

Consider an experiment and let S be the space of possible outcomes.

Example: Experiment is tossing a coin; S={h,t}

Experiment is rolling a pair of dice: S={(1,1),(1,2),…(6,6)}

Experiment is a race consisting of three cars: 1,2 and 3. The sample space is {(1,2,3),(1,3,2),(2,1,3),(2,3,1),(3,1,2),(3,2,1)}

Probabilities

Let Sample Space S = {1,2,…m}

Consider numbers

pi is the probability that the outcome of the experiment is i.

Suppose we toss a fair coin. Sample space is S={h,t}. Then ph = 0.5 and pt = 0.5.

Probability

Experiment: Will it rain or not in Sydney : S = {rain, no-rain} Prain = 138/365 =0.38; Pno-rain = 227/365

Assigning (or rather how to) probabilities is a deep philosophical problem. What is the probability that the “green object standing

outside my house is a burglar dressed in green.”

Probability

An Event A is a set of possible outcomes of the experiment. Thus A is a subset of S.

Let A be the event of getting a seven when we roll a pair of dice. A = {(1,6),(6,1),(2,5),(5,2),(4,3),(3,4) }

P(A) = 6/36 = 1/6

In general

Probability

The sample space S and events are “sets”.

P(S) = 1;

P(Φ) = 0

Addition:

Often

Complement:

Example

Suppose the probability of raining today is 0.4 and tomorrow is also 0.4 and on both days is 0.1. What is the probability it does not rain on either day.

S={(R,N), (R,R),(N,N),(N,R)}Let A be the event that it will rain today and

B it will rain tomorrow. Then A ={(R,N), (R,R)} ; B={(N,R),(R,R)}

Rain at least today or tomorrow:Will not rain on either day: 1 – 0.7 = 0.3

Conditional Probability

One of the most important concepts in all of Data Mining and Machine Learning

P(A|B) = P(AB)/P(B) ..assuming P(B) not equal 0. Conditional probability of A given B has occurred.

Probability it will rain tomorrow given it has rained today. P(A|B) = P(AB)/(B) = 0.1/0.4 = ¼ = 0.25 In general P(A|B) is not equal to P(B|A)

We need conditional probability to answer….

S-Length S-Width P-Length P-Width Flower

Small Medium Small Medium A (SetosA)

Medium Medium Large Large O(Versicolor)

Medium Small Small Large I (Virginica)

Large Large Medium Small A

Large Small Medium Small ?

What should the “prediction” be for the flower ?

Bayes Rule

P(A|B) = P(AB)/P(B); P(B|A) = P(BA)|P(A)

Now P(AB) = P(BA)

Thus P(A|B)P(B) = P(B|A)P(A)

Thus P(A|B) = [P(B|A)P(A)]/[P(B)] This is called Bayes Rule Basis of almost all prediction Latest theories hypothesize that human memory and

action is Bayes rule in action.

Bayes Rule

PriorPosterior

Bayes Rule: Example

The ASX market goes up 60% of the days of a year. 40% of the time it stays the same or goes down. The day the ASX is up, there is a 50% chance that the Shanghai Index is up. On other days there is 30% chance that Shanghai goes up. Suppose The Shanghai market is up. What is the probability that ASX was up.

Define A1 as “ASX is up”; A2 is “ASX is not up”Define S1 as “Shanghai is up”; S2 is “Shanghai is not up”

We want to calculate P(A1|S1) ?

P(A1) = 0.6; P(A2) = 0.4; P(S1|A1) = 0.5; P(S1|A2) = 0.3

P(S2|A1) = 1 – P(S1|A1) = 0.5; P(S2|A2) = 1 –P(S1|A2) = 0.7;

Bayes Rule: Example

We want to calculate P(A1|S1) ? P(A1) = 0.6; P(A2) = 0.4; P(S1|A1) = 0.5; P(S1|A2) = 0.3P(S2|A1) = 1 – P(S1|A1) = 0.5; P(S2|A2) = 1 –P(S1|A2) = 0.7;

P(A1|S1) = P(S1|A1)P(A1)/(P(S1))

How do we calculate P(S1) ?

Bayes Rule: Example

P(S1) = P(S1,A1) + P(S1,A2) [Key Step] = P(S1|A1)P(A1) + P(S1|A2)P(A2) = 0.5 x 0.6 + 0.3 x 0.4 = 0.42

Finally,

P(A1|S1) = P(S1|A1)P(A1)/P(S1) = (0.5 x 0.6)/0.42 = 0.71

Example: Iris Flower

F=Flower; SL=Sepal Length; SW = Sepal Width; PL=Petal Length; PW =Petal Width Data

Large Small Medium

Small ?

choose themaximum

Example: Iris Flower

So how do we compute: P(Data|F=A) ?

This is a a non-trivial question…[subject to much research]

How many times does “Data” appear in the “database” when F=A.

In this case “Data” is a 4-dimensional “data vector.” Each component takes 3 values (small, medium, large). Thus number of combinations 3^4 = 81.

Example: Iris Flower

Conditional Independence

P(Data|F=A) = P(SL=Large,SW=Small,PL=Medium,PW=Small|F=A) ~= P(SL=Large|F=A)P(SW=Small|F=A)P(PL=Medium|

A)P(PW=Small|A)

The above is an assumption to make the “computation easier.” Surprisingly evidence suggest that it works reasonably well in

practice.

This prediction method (which exploits conditional independence) is called “Naïve Bayes Classifier.”