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111
Chapter – IV
RESULTS
112
4.1 Nitrogen mineralization potentials of Rhizospheric, Non-Rhizospheric soils
and Vermicompost:
4.1a. Chemical characterization of Rhizospheric, Non-Rhizospheric soils and
Vermicompost
The percent macronutrient analysis indicated that vermicompost consisted of
1.30 % N; 1.0 % P; 1.5 % K; 6.2 % Ca and 3.4 % Mg. These values are higher than
rhizospheric and non- rhizospheric soils. On the other hand non – rhizospheric soil
consisted of 54.2 % organic matter and 36.6% organic carbon. These values are
higher than that of rhizospheric soil and vermicompost respectively. Further
vermicompost showed a narrow range of C:N ratio (22:1) and C:P ratio (33:2) to
rhizospheric and non-rhizospheric soils (Table 1).
Table 1: Chemical characterization of Rhizospheric, Non-Rhizospheric soils and
Vermicompost
Parameter Non Rhizospheric soil Rhizospheric soil Vermicompost
pH 6.4 6.4 7.4
Organic matter (%) 54.2 24 37.8
Organic Carbon (%) 36.6 10.2 31.4
TKN (%) 1.02 0.48 1.30
Total Nitrogen (%) 0.075 0.043 0.102
NH4+ - N (µg) 223 110 164
NO3- - N (µg) 125 95 170
C:N ratio 31:1 37:1 22:1
C:P ratio 39:1 48:1 33:2
P (%) 0.68 0.80 1.0
K (%) 0.43 0.60 1.5
Ca (%) 3.3 4.3 6.2
Mg (%) 1.9 2.5 3.4
Fe (ppm) 1100 1200 1700
Mn (ppm) 373 380 475
Cu (ppm) 74 79 110
Zn (ppm) 341 345 450
B (ppm) 62 69 84
Values are the mean of three observations.
113
4.2. Collection of Earthworm gut homogenate:
Earthworms (Eisenia foetida) were collected from vermicompost pits of
S.V.Agricultural University, Tirupati and subjected to starvation for 24 hrs to exclude
the microbes associated with soil and other organic waste of the gut. After starvation
the earthworms were dissected out and used for isolation of indigenous gut
microflora.
4.2.1 Isolation of bacteria from earthworm gut homogenate by dilution plate
method:
Serially diluted gut homogenate was plated on Nutrient Agar (NA) and
incubated at 370C for 24 hrs for the isolation of bacteria. A total of ten distinctly
variable colonies based on their morphology were sub cultured and preserved for
further studies.
4.2.2. Primary screening of the isolates for the ability of nitrification:
All the ten bacterial isolates were subjected to primary screening and tested for
the production of nitrites and nitrates.
4.2.2a. Determination of Nitrite production:
After 3 weeks of incubation, the inoculated broth was tested for the presence
of nitrite using Trommsdorf‟s reagent and sulfuric acid. Among the ten isolates six
isolates had shown positive reaction with the appearance of blue-black colour
indicating the presence of nitrite in the medium.
114
4.2.2b. Determination of Nitrate production:
After 3 weeks of incubation, the inoculated broth was tested for the presence
of nitrate using Diphenylamine reagent and sulfuric acid. Among the ten isolates five
isolates had shown positive reaction with the appearance of deep blue colour
indicating the presence of nitrate in the medium.
Out of the ten isolates, four isolates were in common showing a positive
reaction for the both nitrite and nitrate and selected for the secondary screening.
4.2.3 Secondary screening of the isolates for the ability of nitrification:
The four isolates (1- 4) selected through the primary screening were subjected
to secondary screening to determine the best isolate based on its ability to nitrification
through microtiter plate method. Ammonium – calcium carbonate medium was placed
into each of the 8 by 12 wells of a sterile microplate. Aliquots of the four test isolates
of the earthworm gut (0.05ml) were pipetted into each of the first eight wells. Serial
dilutions were then performed by using sterile micropipettes calibrated to deliver
0.05ml and were rotated rapidly. Then the dilutions were further moved to the next
eight wells where they were again rapidly rotated. This process was continued until
serial dilutions have been carried out across the plate. The result obtained was 12 two
fold serial dilutions, with eight replicates at each dilution.
After inoculation and the performance of serial dilutions, the plates were
covered with polypropylene tape and incubated for 3 weeks. Three replicates were
maintained in order to note the weekly reports, because conflicting reports existed
concerning the optimum incubation time for ammonia and nitrite oxidizing
microorganisms [Curtis, et al., (1975), Matulewich, et al., (1975) ].
115
At the end of the incubation period each plate was scored by adding an
indicator (0.2gm of diphenyl amine in 100ml of concentrated H2SO4) to test for the
presence of nitrate and/or nitrite at room temperature (Morgan, 1930).
A blue color reaction indicated that these end products had been formed and
the well was scored as positive and all the four isolates had shown a positive result.
The absence of a blue color was scored as negative. The MPN values were calculated
according to the table provided by de Man (1975) and Parnow (1972) where the table
represents MPN values and standard errors, for a two fold dilution series with eight
tubes per dilution.
The codes P1, P2, P3 represents the number of positive wells in three
successive dilutions, where P1 corresponds to the highest dilution at which all wells
gave positive readings or to the dilution showing the highest number of positive wells
and results were mentioned in table 2 (Fig 3).
Table 2: Ability of nitrification by the four (1, 2, 3, 4) isolates of Earthworm gut:
Sample
Incubation
time
(in weeks)
No.of positive wells in
each dilution
MPN value
MPN
value in
the
original
inoculum
*P1
(32)**
*P2
(64)**
*P3
(128)**
Isolate 1 After 2 weeks 8 7 7 2.921 3738.88
Isolate 2 After 2 weeks 8 4 7 1.607 2056.96
Isolate 3 After 3 weeks 7 6 5 1.376 1761.28
Isolate 4 After 3 weeks 8 4 3 1.054 1349.20
*Dilution code **Dilution factor
116
Earthworm gut isolate 1 was positive within 2 weeks of incubation period as
indicated by the results shown in P1, P2, P3 dilutions the number of positive wells
according to the MPN table were 8, 7, 7 respectively and the value obtained was
2.921.
The MPN value was then multiplied by the dilution factor for P2, in this case
dilution factor of P2 is 64 hence a value of 186.944 was obtained. To calculate the
MPN in 1 ml of the original inoculum, this number is multiplied by 20 (i.e., 20 x
186.944 = 3738.880). Hence, the MPN for 1 ml of the original inoculum (isolate 1)
was 3738.880.
4.3. Identification of bacterial isolate:
Morphological, Cultural and Biochemical characterization of the selected
bacterial isolate was carried out according to the guidelines of Bergey‟s Manual of
Systemic Bacteriology (Volume II) and Manual of Medical Microbiology (Mackie
MacCartney, 1989).
Morphological studies had revealed that the isolate 1 was aerobic endospore
forming, non pigmented and wrinkled colony with concentric rings. The organism
was positive for growth also, under anaerobic conditions. The growing cells were
Gram positive, motile with rod shape. It is positive for Catalase, Methyl red, Voges
proskauer, Citrate utilization, Urease, Nitrate reduction, H2S production, Casein
hydrolysis, Starch hydrolysis; Degradation of Tyrosine, Lecithinase, Gelatin
liquefaction, Arginine dihydrolysis, Lipase, Chitinase and Phosphate solubilisation
reactions. The isolate 1 was also positive for the utilization of sugars like, glucose,
glycerol, maltose and starch. Negative towards oxidase, indole, utilization of
arabinose, xylose, lactose and mannitol (Fig. 4). The isolate grew well in nutrient
117
broth at pH range of 5.7 to 8.0 and showed salt tolerance at NaCl concentration upto
8% (w/v). Bacterial growth was observed in the temperature ranging from 100C -
450C with an optimum growth around 37
0C.
Table 3: Morphological and biochemical tests for identification of bacterial
isolate:
Identification tests Results of the Bacterial isolate
Colony morphology
Configuration
Margins
Surface
Pigmentation
Turbidity
Opacity
Gram‟s reaction
Cell shape
Size(μm)
Spores
Motility
Physiological tests
Growth at temperatures
50C
100C
300C
370C
400C
450C
500C
Growth in NaCl (%) concentration
2
5
7
Wrinkled, cream, round , concentric
Smooth
Butyraceous
-
+
Translucent
Positive
Rods
3-5μm in length, 1.0 -1.2 μm in width
+
+
-
+
+
+
+
+/W
-
+
118
10
Growth at pH
4
5
6
7
8
Growth under anaerobic condition
Biochemical tests
Indole test
Methyl red test
Voges proskauer test
Citrate utilization test
H2S production
Gelatin hydrolysis
Urea hydrolysis
Starch hydrolysis
Lectinase
Lipase (Tween 80 hydrolysis)
Catalase test
Oxidase test
Denitrification
Arginine dihydrolase
Phosphate solubilization
Chitinase
Casein hydrolysis
Degradation of Tyrosine
Nutritional characteristics
Starch
Maltose
Glucose
Glycerol
+
+
-
W
+
+
+
+
+
-
+
+
+
+
+
+
+
+
+
+
-
+
+
+
+
+
+
+
+
119
Succinate
β-alanine
L-histidine
L-lucine
D-alanine
Antibiotic resistance
Penicillin G
Ampicillin
Chloramphenicol
Erythromycin
Streptomycin
Tetracycline
Gentamycin
Tobramycin
Rifampicin
Polymyxin
+
+
-
-
-
-
-
-
+
+
+
-
-
+
+
+
+
4.4. Molecular Characterization of the isolate:
Based on the morphological, biochemical and physiological tests performed
for the isolate 1, it was identified as Bacillus sps., which was further confirmed at
species level by the molecular characterization.
4.4.1. PCR amplification of 16S rRNA
PCR amplification of 16S rRNA was carried out for the isolate 1 using
universal primers as described in the methods. A product of 495 bp was obtained from
the isolate. The optimum temperature for amplification of the gene was 55°C and
maximum product was 30 μg/ml. PCR product was purified and sequenced by using
DNA sequencer as already described. The BLAST search analysis of the 16S rRNA
120
gene sequence of the isolate was done against the Bacillus sps. The BLAST results
revealed 99.77 % homologous with Bacillus cereus.
Multiple sequence alignment of the isolate with closely related homologous
species was done with CLUSTAL W. Phylogenetic tree (Figure 1) was constructed
using Neighbour Joining Method. The 16S rRNA sequence of the isolate was
genotypically similar to Bacillus cereus.
Table 4: BLAST search results of the 16S rRNA sequence of Bacillus cereus
Fig 5 : Phylogenetic tree of isolate 1 ( Using Neighbour joining method).
4.5 Physiological conditions, Carbon and Nitrogen sources and C/N ratio
influencing the growth of the isolate:
Influence of physiological conditions like Temperature, pH, NaCl conc.,
Carbon and Nitrogen sources and C/N ratio were studied for the optimum growth of
the organism. A temperature of 370C, pH 7, NaCl 2%, Glucose as carbon source,
Peptone as nitrogen source and C/N ratio of 0.5% of Glucose: 1 % of peptone were
found optimum for the growth of B. cereus. The growth was measured by taking O.D
values at 600 nm for turbidity.
4.5.1. Effect of temperature on growth
Incubation temperature had influenced the metabolic reactions through
enzymatic activities which effected the growth of organism. B. cereus had produced
maximum growth when incubated at 370C and weak growth at 50
0C (Fig 6)
121
Figure 6: Effect of temperature on growth of B. cereus
0
0.5
1
1.5
2
2.5
3
25 30 35 37 40 45 50
Temperature (°C)
OD
at
600 n
m
4.5.2. Effect of pH on growth
The pH of the medium played an important role in the growth and metabolism
of the organism. B. cereus produced maximum growth at pH 7 and least growth at pH
10 (Fig 7)
Fig 7: Effect of pH on growth of B. cereus
0
0.2
0.4
0.6
0.8
1
1.2
1.4
4.5 5 5.5 6 6.5 7 7.5 8 8.5 9 9.5 10
pH
OD
at
600 n
m
122
4.5.3. Effect of NaCl concentration on growth
Growth of the B. cereus was studied in Nutrient broth with 2 to 10% NaCl
concentration (Fig 8). NaCl concentration of 2% was found to be the optimum for
growth and decreased growth was observed from 4 % NaCl concentration.
Fig 8: Effect of NaCl concentration on growth of B. cereus
0
0.5
1
1.5
2
2.5
Control 2 4 6 8
NaCl Concentration (%)
OD
at
600 n
m
4.5.4. Effect of different carbon sources on growth of B. cereus
Eight different carbon sources, like – glucose, starch, sucrose, maltose,
lactose, raffinose, D-mannitol and arabinose were amended in NB medium to find out
suitable carbon source for optimum growth of B. cereus (Fig 9). Glucose was found to
be the best carbon source for the maximum growth of B. cereus isolate followed by
Starch, Maltose, Sucrose and Raffinose when compared to the rest of the carbon
sources.
123
Fig 9: Effect of carbon sources on growth of B. cereus
0
0.4
0.8
1.2
1.6
Gluco
se
Sta
rch
Suc
rose
Malto
se
Lactos
e
Raffi
nose
D- M
annito
l
Ara
binos
e
Cont
rol
Carbon sources
OD
at
600 n
m
4.5.5. Effect of nitrogen sources on growth of B. cereus
Provision of utilizable nitrogen source to organisms was the basic requirement
for the optimum growth; hence the NB medium was supplemented with different
nitrogen sources namely L-aspargine, L-alanine, L-arginine, L-proline, KNO3,
CaNO3, peptone and yeast extract. Among the nitrogen sources tested in the present
study, Peptone had shown high influence on the growth of B. cereus followed by
CaNO3 and Yeast extract when compared with the rest of nitrogen sources (Fig 10).
Fig 10: Effect of nitrogen sources on growth of B. cereus
0
0.4
0.8
1.2
1.6
L-Asp
argine
L-A
lanine
L-Histid
ine
L-Pro
line
L-Arg
inine
Soy
a bea
n m
eal
KNO3
CaN
O3
Pep
tone
Yea
st e
xtra
ct
Nitrogen sources
OD
at
600 n
m
124
4.5.6 Effect of different C/N ratios on growth
Different carbon and nitrogen sources were amended to find out suitable C/N
ratio for the optimum growth of B. cereus. Among the different ratios 0.5% of glucose
along with 1% of peptone had shown as the best ratio for the growth of B. cereus
(Fig 11).
Fig 11: Effect of different C/N ratio on growth of B. cereus
0
0.5
1
1.5
2
2.5
3
0.5:0.5 0.5:1 01:01 01:00.5 control
C:N ratio on growth
OD
at
600 n
m
4.6.1.1. Selection of suitable medium for ammonium oxidation by nitrifying B.
cereus
Nutrient availability was one of the major factors that influence the metabolic
activity of bacteria. Number of selective media have been developed and used for
studying the metabolic activities of nitrifying bacteria. In the present study five
different media like: the Modified Winogradsky‟s medium; medium recommended by
IMTECH; Stephenson‟s medium; Lewis and Pramer‟s medium and ACC medium,
were used for comparison of the growth and either ammonia oxidation by B.cereus
with incubation time.
125
Of the five media used for the metabolic activity of ammonium oxidizers the
ACC medium was found to be the best choice (Table 5.1). The nitrite released from
the added ammonium in different media was in the order ACC > Modified
Winogradsky‟s medium > IMTECH medium > Stephenson‟s medium > Lewis and
Pramer‟s medium (Fig 12).
Fig 12: Comparison of Different media for Ammonium oxidation
0
1000
2000
3000
4000
5000
6000
1 2 3 4 5 6
INCUBATION TIME (in Days)
Mic
rog
ram
s o
f N
O2-
- N
/ 50m
l
ACC Modified Winodradsky's medium
IMTECH Stephenson's medium
Lewis and Pramer's medium
Table 5: Results of Two Way ANOVA
Source of variation Sum of
Squares df Mean Square F-value p-value
Media 39366043.600 4 9841510.900 17.102*
* 0.000
Incubation Time 23594145.656 5 4718829.131 8.200** 0.000
Error 46036053.733 80 575450.672
Total 132772855.000 90
** Significant at 1% level
126
Table 5.1: Average Concentration of Nitrite in different media
Media Mean production of Nitrite
Lewis and Pramer's medium 51.78a
Stephenson's medium 56.89a
IMTECH 200.61a
Modified Winogradsky's medium 457.11a
ACC 1803.56b
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable medium for ammonia
oxidizer were tabulated. (Table 5). The results were showing a significant difference
at 1% level among the media since P value 0.000 < 0.01 for the corresponding F-
value (17.102).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of media with respect to the incubation time
and were found significant. The result suggested that the difference between any two
media with respect to the incubation time was significant which means the ammonium
oxidation levels were varying according to the medium (Table 5.1).
4.6.1.2. Selection of suitable medium for nitrite oxidation by B. cereus
In order to identify an enriched medium which would support high metabolic
activity of nitrite oxidizers, three media i.e., NCC, Modified Winogradsky‟s medium
and IMTECH medium were used for the metabolic activity of nitrite oxidizer. The
NCC medium was found to be the best choice (Table 6). The nitrate release from the
added nitrite in different media with time were in the order NCC > Modified
Winogrdsky‟s medium > IMTECH medium (Fig 13).
127
The decrease in the nitrite content from the initially available amounts in the
medium was taken as a measure for the increase in the metabolic activity of the
nitrifying bacteria (Fig 13). There was no trace of nitrite in Modified Winogradsky‟s
medium after 14 days of incubation and where as about 2% of initially added nitrite
remained after 14 days of incubation in the IMTECH medium. The results showed
that NCC medium was the best choice for nitrite oxidation since nitrite was oxidized
by 9th
day.
Fig 13: Comparison of different media for nitrite oxidation
Comparision of Different media for Nitrite Oxidizers
0
20
40
60
80
100
120
1 2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation period (in Days)
% o
f N
itri
te N
itro
gen
NCC Modified Winodradsky's medium IMTECH
Table 6: Results of Two Way ANOVA
Media Mean Std.
Deviation F-value
p-
value
NCC 100 0
374851.75** 0 Modified Winodradsky's medium 74.96 0.057
IMTECH 52.9 0.1
** Significant at 1% level
The results obtained for the selection of suitable medium for nitrite oxidation
were tabulated (Table 6). The results were showing a significant difference at 1%
128
level among the media since P value 0.000 < 0.01 for the corresponding F- Value
(374851.75).
4.6.2. Nitrogen mineralization by B. cereus :
Nitrogen mineralization was studied by estimating the initial ammonium
levels to the oxidised nitrite and nitrate levels.
4.6.2.1. Estimation of nitrite
Nitrite production by B. cereus increased with incubation time upto 9 days and
later there was a gradual decrease in the nitrite production (Fig 14) .
Fig 14: Nitrite production by B. cereus
0
20
40
60
80
100
2 3 4 5 6 7 8 9 10 11 12
Sampling period (In Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
4.6.2.2. Estimation of nitrate
Nitrate production by B. cereus gradually increased with incubation period
upto 12th
day after which there was a gradual decrease in nitrate production (Fig 15).
129
Fig 15: Nitrate production by B. cereus
0
40
80
120
160
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Sampling period (In Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
4.7. Factors effecting nitrification activity:
The influence of different physiological factors like carbon source, nitrogen
source, temperature, pH, metal ions, inhibitors, chealating agents and pesticides on
nitrification was observed.
4.7.1a. Effect of carbon sources on nitrite production:
Five carbon sources (1% w/v) like glucose, sodium acetate, L-lysine, malate
and citrate were amended in 250 ml of Basal mineral salts medium to find out
suitable carbon source for the production of nitrite. Sodium acetate was found to be
the best carbon source for the maximum production of nitrite followed by citrate and
glucose when compared to the other carbon sources (Fig 16).
130
Fig 16: Effect of Carbon sources on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
Glucose Sodium acetate L-lysine Malate Citrate
Table 7 : Results of Two Way ANOVA
Source of variation Sum of
Squares Df
Mean
Square F-value p-value
Carbon sources 5520.450 4 1380.113 91.289*
* 0.000
Incubation Time 38656.500 7 5522.357 365.282
** 0.000
Error 1632.750 108 15.118
Total 346410.00
0 120
** Significant at 1% level.
Table 7.1 : Average concentration of Nitrite with different carbon sources
Carbon source Mean production of Nitrite
L-lysine 40.50a
Malate 46.00b
Glucose 48.88c
Citrate 55.00d
Sodium acetate 59.88e
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable carbon source for the
production of nitrite was tabulated (Table 7). The results were showing a significant
131
difference at 1% level among the carbon sources since P value 0.000 < 0.01 for the
corresponding F- value (365.282).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of carbon sources with respect to the
incubation time and were found significant. The result suggested that the difference
between any two carbon sources with respect to the incubation time was significant
which means the nitrite production levels were varying according to the carbon source
(Table 7.1).
4.7.1b. Effect of carbon sources on nitrate production:
Five carbon sources (1% w/v) like glucose, sodium acetate, L-lysine, malate
and citrate were amended in 250 ml of Basal mineral salts medium to find out
suitable carbon source for the production of nitrate. Sodium acetate was found to be
the best carbon source for the maximum production of nitrate followed by citrate and
glucose when compared to the other carbon sources (Fig 17).
Fig 17: Effect of Carbon sources on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
Glucose Sodium acetate L-lysine Malate Citrate
132
Table 8 : Results of Two Way ANOVA
Source of
variation Sum of Squares Df
Mean
Square F-value p-value
Carbon
sources 159356.031 4 39839.008 316.160** 0.000
Incubation
Time 251124.738 12 20927.062 166.076** 0.000
Error 22429.569 178 126.009
Total 2425743.000 195
** Significant level at 1% level
Table 8.1: Average concentration of Nitrate with different carbon sources
Carbon Sources Mean production of Nitrate
L-lysine 59.08a
Malate 74.85b
Glucose 118.23c
Citrate 122.69c
Sodium acetate 130.62d
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable carbon source for the
production of nitrate was tabulated (Table 8). The results were showing a significant
difference at 1% level among the carbon sources since P value 0.000 < 0.01 for the
corresponding F- Value (316.160).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of carbon sources with respect to the
incubation time and were found significant. The result suggested that the difference
between any two carbon sources with respect to the incubation time was significant
which means the nitrate production levels were varying according to the carbon
source (Table 8.1).
133
4.7.2a. Effect of nitrogen sources on production of Nitrite:
The effect of various nitrogen sources (1% w/v) such as Tryptone, Beef
extract, Ammonium sulphate, Urea, Soya bean meal and Peptone were amended in
250 ml of Basal mineral salts medium to find out the suitable nitrogen source for the
production of nitrite was determined. Among the nitrogen sources tested in the
present study, Ammonium sulphate had shown high influence on the production of
nitrite followed by Urea, Tryptone and others (Fig 18).
Fig 18: Effect of Nitrogen sources on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
Tryptone Beef extract Ammonium sulphate Urea Soya bean meal Peptone Control
Table 9 : Results of Two Way ANOVA
:
Source of
variation Sum of Squares Df
Mean
Square F-value p-value
Nitrogen
sources 52548.321 6 8758.054 165.519** 0.000
Incubation
Time 37490.089 7 5355.727 101.218** 0.000
Error 8148.536 154 52.913
Total 380349.000 168
**Significant at 1% level
134
Table 9.1: Average concentration of Nitrite with different Nitrogen sources
Nitrogen sources Mean production of Nitrite
Control 0.00a
Beef extract 40.50b
Soya bean meal 42.38b
Peptone 46.00c
Tryptone 46.25c
Urea 53.50d
Ammonium sulphate 58.25e
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable nitrogen sources for the
production of nitrite was tabulated (Table 9). The results were showing a significant
difference at 1% level among the nitrogen sources since P value 0.000 < 0.01 for the
corresponding F- value (165.519).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of nitrogen sources with respect to the
incubation time and were found significant. The result suggested that the difference
between any two nitrogen sources with respect to the incubation time was significant
which means the nitrite production levels were varying according to the nitrogen
source (Table 9.1).
4.7.2b. Effect of different Nitrogen sources on production of Nitrate:
The effect of various nitrogen sources (1% w/v) such as Tryptone, Beef
extract, Ammonium sulphate, Ammonium chloride, Urea, Soya bean meal, Peptone,
Sodium nitrite, KN02, and CaN02, were amended in 250 ml of Basal mineral salts
medium to find out the suitable nitrogen source for the production of nitrate. Among
135
the nitrogen sources tested in the present study, Sodium nitrite had shown highest
influence on the production of nitrate followed by Calcium nitrite and Potassium
nitrite and other nitrogen sources (Fig 19).
Fig 19: Effect of Nitrogen sources on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rate
(Mic
rog
ram
s/G
ram
)
Tryptone Beef extract Ammonium sulphate Ammonium chloride
Urea Soya bean meal Peptone Potassium Nitrite
Sodium Nitrite Calcium Nitrite Control
Table 10 : Results of Two Way ANOVA
Source of
variation Sum of Squares Df
Mean
Square F-value p-value
Nitrogen
sources 579494.811 10 57949.481 293.020** 0.000
Incubation
Time 280978.993 12 23414.916 118.397** 0.000
Error 80293.007 406 197.766
Total 3180282.000 429
**Significant at 1% level
136
Table 10.1: Average concentration of Nitrate with different Nitrogen sources
Nitrogen sources Mean production of Nitrate
Control 0.00a
Beef extract 50.00b
Soya bean meal 54.46c
Peptone 56.23c
Tryptone 56.69c
Ammonium chloride 58.77c
Urea 69.69d
Ammonium sulphate 76.69e
Potassium Nitrite 119.31f
Calcium Nitrite 122.69f
Sodium Nitrite 130.23g
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable nitrogen source for the
production of nitrate was tabulated (Table 10). The results were showing a significant
difference at 1% level among the nitrogen sources since P value was 0.000 < 0.01 for
the corresponding F- value (293.020).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of nitrogen sources with respect to the
incubation time and were found significant. The result suggested that the difference
between any two nitrogen sources with respect to the incubation time was significant
which means the nitrate production levels were varying according to the nitrogen
source (Table 10.1).
137
4.7.3. Effect of pH on nitrification activity
The effect of pH on nitrification activity was determined by using (NH4)2SO4
and NaNO2 as substrates in the Basal mineral salts medium.
4.7.3a. Effect of pH on Nitrite production
The pH of the medium played an important role in the production of nitrite in
the medium. Maximum levels of nitrite was produced by B. cereus at pH 7 followed
by 8, 9 and least at pH 12 (Fig 20).
Fig 20: Effect of pH on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
6 5 8 7 9 10 11 12 Control
Table 11 : Results of Two Way ANOVA
Source of variation Sum of
Squares Df Mean Square F-value p-value
pH 8138.250 7 1162.607 90.943** 0.000
Incubation Time 53910.000 7 7701.429 602.432** 0.000
Error 2262.750 177 12.784
Total 468378.000 192
**Significant at 1% level
138
Table 11.1: Average concentration of Nitrite at different pH
pH Mean production of Nitrite
12 38.50a
11 40.38a
5 40.50a
10 42.38b
6 46.25c
9 47.25c
8 53.50d
7 58.25e
Note: Same letter indicates insignificant difference in any pair of Media for pH
according to Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of suitable pH for the production of
nitrite was tabulated (Table 11). The results were showing a significant difference at
1% level among the different pH since P value 0.000 < 0.01 for the corresponding F-
value (90.943).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of pH with respect to the incubation time and
were found significant. The result suggested that the difference between any two pH
ranges with respect to the incubation time was significant which means the nitrite
production levels were varying according to the pH range (Table 11.1).
4.7.3b. Effect of pH on Nitrate production
The pH of the medium played an important role in the production of nitrate
and B. cereus produced maximum levels of nitrate at pH 7 followed by 8, 6 and least
at pH 5. (Fig 21).
139
Fig 21: Effect of pH on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
5 6 8 7 9 10 11 12 Control
Table 12 : Results of Two Way ANOVA
Source of variation Sum of Squares Df Mean Square F-value p-value
pH 321661.356 7 45951.622 284.542** 0.000
Incubation Time 269407.212 12 22450.601 139.019** 0.000
Error 47156.019 292 161.493
Total 2830131.000 312
** Significant at 1% level
Table 12.1: Average concentration of Nitrate at different pH
pH Mean production of
Nitrate
5 50.00a
12 56.23b
11 57.54b
10 58.54b
9 75.92c
6 118.77d
8 122.31d
7 131.23e
Note: Same letter indicates insignificant difference in any pair of Media for pH
according to Duncan's Multiple Range Test (DMRT).
140
The results obtained for the selection of suitable pH for the production of
nitrate were tabulated (Table 12). The results were showing a significant difference at
1% level among the pH since P value 0.000 < 0.01 for the corresponding F- value
(284.542).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of pH with respect to the incubation time and
were found significant. The result suggested that the difference between any two pH
ranges with respect to the incubation time was significant which means the nitrate
production levels were varying according to the pH range (Table 12.1).
4.7.4. Effect of temperature on nitrification activity
The effect of Temperature on nitrification activity was determined by using
(NH4)2SO4 and NaNO2 as substrates in the Basal mineral salts medium.
4.7.4a. Effect of Temperature on Nitrite production
The production of nitrite at different temperatures played an important role
in the medium. B. cereus produced maximum levels of nitrite at 370C, followed by
400C and least at 60
0C (Fig 22).
Fig 22: Effect of Temperature on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
30 35 37 40 45 50 55 60 Control
141
Table 13 : Results of Two Way ANOVA
Source of variation Sum of
Squares Df Mean Square F-value p-value
Temperature 8138.250 7 1162.607 90.943** 0.000
Incubation Time 53910.000 7 7701.429 602.432** 0.000
Error 2262.750 177 12.784
Total 468378.000 192
** Significant at 1% level
Table 13.1: Average concentration of Nitrite at different temperatures
Temperature (0C) Mean production of Nitrite
60 38.50a
55 40.38a
35 40.50a
30 46.25b
45 47.25b
40 53.50c
37 58.25c
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of optimum temperature for the
production of nitrite was tabulated (Table 13). The results were showing a significant
difference at 1% level among the temperatures since P value 0.000 < 0.01 for the
corresponding F- value (90.943).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of temperatures with respect to the incubation
time and were found significant. The result suggested that the difference between any
two temperature ranges with respect to the incubation time was significant
which means the nitrite production levels were varying according to the temperature
(Table 13.1).
142
4.7.4b. Effect of Temperature on Nitrate production
The production of nitrate at different temperatures played an important role in
the medium. B. cereus produced maximum levels of nitrate at 370C followed by 40
0C,
350C and least at 60
0C (Fig 23).
Fig 23: Effect of Temperature on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation perid (in Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
30 35 37 40 45 50 55 60 Control
Table 14 : Results of Two Way ANOVA
Source of variation Sum of
Squares df Mean Square F-value p-value
Temperature 316916.740 7 45273.820 289.583** 0.000
Incubation Time 269338.212 12 22444.851 143.563** 0.000
Error 45651.635 292 156.341
Total 2823813.000 312
** Significant at 1% level
143
Table 14.1: Average concentration of Nitrate at different temperatures
Temperature (0C) Mean production of Nitrate
60 50.00a
55 57.23b
30 57.31b
50 58.69b
45 75.69c
35 119.23c
40 122.31c
37 130.08c
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the selection of optimum temperature for the
production of nitrate were tabulated (Table 14). The results were showing a
significant difference at 1% level among the temperature since P value 0.000 < 0.01
for the corresponding F- value (289.583).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of temperatures with respect to the incubation
time and were found significant. The result suggested that the difference between any
two temperatures with respect to the incubation time was significant which means the
nitrate production levels were varying according to the temperature (Table 14.1).
4.7.5. Effect of metal ions on nitrification activity
The effect of different metal ions on nitrification activity was determined by
using (NH4)2SO4 and NaNO2 as substrates in the Basal mineral salts medium.
144
4.7.5a. Effect of metal ions on Nitrite production
Supplementation of culture medium with metal cations improved substantially
the production of nitrite. This observation strongly suggested the requirement of some
metal ions for production of nitrite. The presence of Mg+2
, Ca+2
followed by Fe+3
and
Co+2
at 5.0 mM enhanced the production of nitrite compared with rest of the metal
ions (Fig 24).
Fig 24: Effect of Metal ions on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9
Incubation (in Days)
Co
ncen
trati
on
Nit
rite
(µ
g/g
)
Ca2+ Mg2+ Hg2+ Co+2 Cd+2 Fe+3 Cu2+ Zn2+ Control
Table 15 : Results of Two Way ANOVA
Source of variation Sum of
Squares Df Mean Square F-value p-value
Metal ions 10811.583 8 1351.448 111.794** 0.000
Incubation Time 60675.625 7 8667.946 717.026** 0.000
Error 2417.750 200 12.089
Total 535665.000 216
** Significant at 1% level
145
Table 15.1: Average concentration of Nitrite production in presence of different
Metal ions
Metal ions Mean production of
Nitrite
Zn2+
37.00a
Cd2+
39.75b
Cu2+
41.13b
Hg2+
43.00c
Control 44.25c
Co2+
46.25d
Fe3+
49.50e
Ca2+
55.13f
Mg2+
60.13g
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of metal ions on the production of nitrite
was tabulated (Table 15). The results were showing a significant difference at 1%
level among the metal ions since P value 0.000 < 0.01 for the corresponding F- value
(111.794).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference among the metal ions with respect to the
incubation time and were found significant. The result suggested that the difference
between any two metal ions with respect to the incubation time was significant which
means the nitrite production levels were varying according to the metal ion (Table
15.1).
146
4.7.5b. Effect of metal ions on Nitrate production
Supplementation of culture medium with metal cations improved substantially
the production of nitrate. This observation strongly suggested the requirement of some
metal ions for production of nitrate. The presence of Mg+2
, Ca+2
and Fe+3
at 5.0 mM
enhanced the production of nitrate compared with other metal ions (Fig 25).
Fig 25: Effect of Metal ions on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation (in Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
Ca2+ Mg2+ Hg2+ Co+2 Cd+2 Fe+3
Cu2+ Zn2+ Control
Table 16 : Results of Two Way ANOVA
Source of variation Sum of
Squares df Mean Square F-value p-value
Metal ions 318995.270 8 39874.409 282.458** 0.000
Incubation Time 328451.816 12 27370.985 193.887** 0.000
Error 46444.769 329 141.170
Total 3095736.000 350
** Significant at 1% level
147
Table 16.1: Average concentration of Nitrate production in presence of different
Metal ions
Metal ions Mean production of Nitrate
Zn2+
50.31a
Cd2+
57.31b
Cu2+
57.46b
Hg2+
58.54b
Control 74.23c
Co2+
75.71c
Fe3+
119.38d
Ca2+
122.69d
Mg2+
129.69e
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of metal ions on the production of nitrate
was tabulated (Table 16). The results were showing a significant difference at 1%
level among the metal ions since P value 0.000 < 0.01 for the corresponding F- value
(282.458).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of metal ions with respect to the incubation
time and were found significant. The result suggested that the difference between any
two metal ions with respect to the incubation time was significant which means the
nitrate production levels were varying according to the metal ion (Table 16.1).
148
4.7.6. Effect of Inhibitors and Chealating agents on nitrification activity
The effect of different Inhibitors and Chealating agents on nitrification activity
was determined by using (NH4)2SO4 and NaNO2 as substrates in the Basal mineral
salts medium.
4.7.6a. Effect of Inhibitors and Chealating agents on Nitrite production
The effect of various Inhibitors/ Chealating agents (5mM) such as Nitrapyrin,
Dicyanodiamide, Thiourea, Potassium cyanide, Sodium diethyl dithiocarbonate and
L- Histidine in the basal mineral salts medium on nitrite production was determined.
Out of all, Nitrapyrin had shown the profound effect on Nitrite production (Fig 26).
Fig 26: Effect of Inhibitors/Chealators on Nitrite production
0
10
20
30
40
50
60
70
80
90
2 3 4 5 6 7 8 9
Incubation time (in Days)
Co
ncen
trati
on
of
Nit
rite
(µ
g/g
)
Nitrapyrin Dicyanodiamide Thiourea
Potassium cyanide Sodium diethyldithiocarbonate L-Histidine
Control
Table 17 : Results of Two Way ANOVA
Source of variation Sum of Squares Df Mean
Square F-value p-value
Inhibitors/Chealators 50369.786 6 8394.964 109.668** 0.000
Incubation Time 474.375 7 67.768 0.885 0.520
Error 11788.500 154 76.549
Total 94809.000 168
**Significant at 1% level
149
Table 17.1: Average concentration of Nitrite production in presence of different
Inhibitors/Chealators
Inhibitors/Chealators Mean production of
Nitrite
Nitrapyrin 4.00a
Sodium diethyldithiocarbonate 5.38b
Thiourea 6.13b
Dicyanodiamide 6.50b
Potassium cyanide 8.88b
L-Histidine 10.00b
Control 56.00c
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of Inhibitors/Chealators on the production
of nitrite was tabulated (Table 17). The results were showing a significant difference
at 1% level among the Inhibitors/Chealators since P value 0.000 < 0.01 for the
corresponding F- value (109.668).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of Inhibitors/Chealators with respect to the
incubation time and were found significant. The result suggested that the difference
between any two Inhibitors/Chealators with respect to the incubation time was
significant which means the nitrite production levels were varying according to the
Inhibitors/Chealators (Table 17.1).
150
4.7.6b. Effect of different Inhibitors and Chealating agents on Nitrate production
The effect of various Inhibitors/ Chealating agents at 5mM such as Nitrapyrin,
Dicyanodiamide, Thiourea, Potassium cyanide, Sodium diethyl dithiocarbonate and
L- Histidine in the Basal mineral salts medium was determined. Out of all Nitrapyrin
had shown the profound effect on Nitrate production (Fig 27).
Fig 27: Effect of Inhibitors/Chealators on Nitrate production
0
20
40
60
80
100
120
140
160
180
2 3 4 5 6 7 8 9
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rate
(µ
g/g
)
Nitrapyrin Dicyanodiamide Thiourea
Potassium cyanide Sodium diethyldithiocarbonate L-Histidine
Control
Table 18 : Results of Two Way ANOVA
Source of variation Sum of
Squares df
Mean
Square F-value p-value
Inhibitros/Chealators 184815.321 6 30802.554 106.384** 0.000
Incubation Time 1976.089 7 282.298 0.975 0.452
Error 44589.536 154 289.542
Total 353691.000 168
**Significant at 1% level
151
Table 18.1: Average concentration of Nitrate production in presence of different
Inhibitors/Chealators
Inhibitros/Chealators Mean production of
Nitrate
Nitrapyrin 10.25a
Sodium diethyldithiocarbonate 11.25a
Thiourea 11.50a
Dicyanodiamide 14.75a
Potassium cyanide 15.38a
L-Histidine 17.75a
Control 108.00b
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of Inhibitors/ Chealators on the production
of nitrate were tabulated (Table 18). The results were showing a significant difference
at 1% level among the Inhibitors/ Chealators since P value 0.000 < 0.01 for the
corresponding F- value (106.384).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of Inhibitors/ Chealators with respect to the
incubation time and were found significant. The result suggested that the difference
between any two Inhibitors/ Chealators with respect to the incubation time was
significant which means the nitrate production levels were varying according to the
Inhibitors/ Chealators (Table 18.1).
152
4.7.7 Effect of pesticidies on nitrification activity
In order to determine the effect of pesticides on nitrification, Endosulfan, a
chlorinated organic insecticide; Dithane M-45 (Mancozeb), a contact fungicide and
Neem oil (Azadirachtin), a biological insecticide, were selected in the present study.
Stock solutions of pesticides were prepared by dissolving in distilled water.
4.7.7a. Effect of pesticides on nitrite production
ACC medium of 50 ml was dispensed in each of the 100 ml conical flasks and
sterilized. After cooling, 2 ml of 24 hrs culture was inoculated into the medium. The
known concentrations of pesticides 10 µg/ml were added to the flasks. The flask
containing medium and inoculum, but without a pesticide served as control. All the
flasks were incubated at 370C in an orbital shaker at 120 rpm. Nitrite levels were
estimated daily for a period 12 days (Fig 28).
Fig 28: Effect of pesticides on Nitrite production
0
10
20
30
40
50
60
70
80
90
100
2 3 4 5 6 7 8 9 10 11 12
Incubationperiod (in Days)
Co
ncen
trati
on
of
Nit
rite
(Mic
rog
ram
s/G
ram
)
Control (without Pesticide) Endosufan Mancozeb Neem oil
153
Table 19 : Results of Two Way ANOVA
Source of variation Sum of
Squares df
Mean
Square F-value p-value
Pesticide 49271.455 3 16423.818 207.007** 0.000
Incubation Time 10515.409 10 1051.541 13.254** 0.000
Error 9362.045 118 79.339
Total 188670.000 132
**Significant at 1% level
Table 19.1: Average concentration of Nitrite production in presence of different
pesticides
Pesticide Mean production of Nitrite
Endosulfan 16.18a
Mancozeb 18.82a
Neem oil 22.00b
Control (without Pesticide) 63.36c
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of pesticides on the production of nitrite
was tabulated (Table 19). The results were showing significant difference at 1% level
among the pesticides since P value 0.000 < 0.01 for the corresponding F- value
(207.007).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of pesticides with respect to the incubation
time and were found significant. The result suggested that the difference between any
two pesticides with respect to the incubation time was significant which means the
nitrite production levels were varying according to the pesticides (Table 19.1).
154
4.7.7b. Effect of pesticides on nitrate production
NCC medium of 50 ml was dispensed in each of the 100 ml conical flask and
sterilized. After cooling, 2 ml of 24 hrs culture was inoculated into the medium.
The known concentrations of pesticides at 10, 25, 50 µg/ml were added to the flasks.
The flask containing medium and inoculum, but without a pesticide served as control.
All the flasks were incubated at 370C in an orbital shaker at 120 rpm. Nitrate levels
were estimated daily for a period 14 days (Fig 29).
Fig 29: Effect of Pesticides on Nitrate production
0
20
40
60
80
100
120
140
160
180
200
2 3 4 5 6 7 8 9 10 11 12 13 14
Incubation period (in Days)
Co
ncen
trati
on
of
Nit
rate
(Mic
rog
ram
s/G
ram
)
Control (without Pesticide) Neem oil Endosufan Mancozeb
Table 20 : Results of Two Way ANOVA
Source of variation Sum of
Squares Df
Mean
Square F-value p-value
Pesticide 118032.818 3 39344.273 285.381** 0.000
Incubation Time 110650.909 10 11065.091 80.260** 0.000
Error 16268.182 118 137.866
Total 1019286.000 132
** Significant at 1% level
155
Table 20.1: Average concentration of Nitrate production in presence of different
pesticides
Pesticide Mean production of Nitrate
Endosulfan 48.55a
Mancozeb 55.27b
Neem oil 77.64c
Control
(without Pesticide) 124.91d
Note: Same letter indicates insignificant difference in any pair of Media according to
Duncan's Multiple Range Test (DMRT).
The results obtained for the effect of pesticides on the production of nitrate
was tabulated (Table 20). The results were showing a significant difference at 1%
level among the pesticides since P value 0.000 < 0.01 for the corresponding F- value
(285.381).
Further, Post hoc test i.e., Duncan‟s Multiple Range Test (DMRT) was carried
out to observe the pair wise difference of pesticides with respect to the incubation
time and were found significant. The result suggested that the difference between any
two pesticides with respect to the incubation time was significant which means the
nitrate production levels were varying according to the pesticides (Table 20.1).
4.8. Purification and Characterization of Nitrifying Enzymes:
4.8.1. Partial Purification and characterization of Ammonium Monooxygenase
enzyme:
4.8.1a. Purification:
The cell free culture filtrate obtained by sonication and was suspended in 10
mM Tris HCl was used as crude enzyme source. In the culture filtrate, total protein
content was determined by the methods described in section 3.9.1b. The supernatant
was fractionated by precipitation with ammonium sulphate at 80% saturation. The
156
precipitate was suspended in 20 mM Tris HCl buffer (pH 8.0) and dialyzed against
the same buffer. After dialysis, protein content was determined. Ammonium sulphate
fraction (40 ml) had total protein of 140 mg and specific activity of 3.9 EU/mg.
Fraction from ammonium sulphate precipitation was subjected to Ion-
exchange chromatography by means of a DEAE- Sepharose CL6B. Total activity and
protein content for the 14 ml fraction obtained from DEAE- Sepharose CL6B column
chromatography were showing a total activity of 400 EU and 29 mg of total protein
respectively. The specific activity calculated was 13.8 EU/mg for DEAE- Sepharose
CL6B fraction.
The fraction from DEAE- Sepharose CL6B chromatography was subjected to
gel filtration chromatography by using Sephadex G-75 column. Total activity and
protein content in 5 ml of Sephadex G-75 fraction were 250 EU and 5 mg
respectively. The purified enzyme eluted as a single peak on Sephadex G-75 column
had a specific activity of 50 EU/mg. An overall 71.37 % fold purification and specific
activity of 50.0 EU/mg protein was achieved with 35.71% recovery (Table 21). The
fraction from Sephadex G-75 column was subjected to SDS-PAGE to determine
purity of enzyme.
Table 21: Summary of purification of Ammonium monooxygenase enzyme
Purification Step Volume
(ml)
Total
Activity
(EU)
Total
Protein
(mg)
Specific
Activity
(EU/mg )
Recovery
(%)
Fold
Purification
Culture Filtrate 120 700 900 0.7 100 1
(NH4 )2SO4
Fraction
40 550 140 3.9 78.57 5.57
DEAE- Sepharose
CL6B Fraction
14 400 29 13.8 57.14 19.70
Sephadex
G-75 Fraction
5 250 5 50 35.71 71.37
Values represented in the table are means of three separately conducted experiments.
157
4.8.1b. Determination of molecular weight of Ammonium monooxygenase
(AMO) enzyme
The molecular mass of Ammonium monooxygenase enzyme of B.cereus
was determined by SDS-PAGE. The appearance of two seperated bands on SDS-
PAGE suggested that the enzyme was purified. The purified AMO contained two
polypeptides of molecular masses nearer to 36 and 42 kDa., when compared to the
standard molecular weights of electrophoresis by using SDS-PAGE (Fig 30).
4.8.2. Partial Purification and characterization of Nitrite oxidoreductase (NOR)
enzyme:
4.8.2a. Purification:
The cell free culture filtrate obtained by sonication which was suspended in
10mM Potassium Phosphate Buffer (KPB) was used as crude enzyme source. The
crude enzyme was first precipitated with 80% ammonium sulfate saturation and a
two-step chromatography was conducted to purify the NOR enzyme. DEAE-
cellulose column chromatography had purified the enzyme partially. The final
purification step i.e., Gel filtration chromatography (Sephadex-75) yielded pure NOR.
The results of purification were summarized (Table 22). In order to check
purification, aliquots of different fractions were located and run on SDS-PAGE. The
purification fold was 9.06 with an yield of 31.4%. Its specific activity was 3.1 EU/mg.
158
Table 22: Summary of purification of Nitrite oxidoreductase enzyme
Purification
Step
Total
Volume
(ml)
Total
Protein
(mg)
Activity
(n mole/min)
Specific
Activity(U/mg)
Yield
(100%)
Purification
fold
Crude Enzyme 10 2.6 0.89 0.342 100 1
Ammonium
Sulphate
precipitation
8 0.68 0.6 0.882 67.4 2.578
DEAE
Cellulose
6 0.59 0.39 0.661 43.8 1.932
Sephadex G-75 1 0.09 0.28 3.1 31.4 9.06
4.8.2b. Determination of molecular weight of Nitrite oxidoreductase enzyme:
The molecular mass of Nitrite oxidoreductase of B. cereus was determined by
SDS-PAGE. The appearance of a single band on SDS-PAGE suggested that the
enzyme was purified and monomeric. It revealed a single band with molecular weight
of approximately 63 kDa, when compared to the standard molecular weights of
electrophoresis by using SDS-PAGE (Fig 31).
4.9. Effect of Nitrifying Bacillus cereus on growth of groundnut variety JL-24
Plant growth promotion as influenced by inoculation with nitrifying bacteria
was measured for groundnut plants variety JL 24 during 15 and 40 days of growth
interms of shoot length, root length, no.of leaves and total dry mass over uninoculated
controls. The following treatments were set up with different variables to evaluate the
inoculation effect with seed treatment and NO3- - N availability.
T0: Water (negative control), T1: Nitrogen (positive control), T2: NPK
(Fertilizer control), T3: NPK ( N-0, P-65.5 mg, K- 167 mg) + Bacterial inoculum, T4:
NPK ( N- 180 mg, P-65.5 mg, K- 167 mg) + Bacterial inoculum and T5: NPK ( N-
360 mg, P-65.5 mg, K- 167 mg) + Bacterial inoculum.
159
The plant growth promotion in terms of shoot length, root length, no.of leaves
and total dry weight of plant were observed significantly high for the treatments T5,
T4, T3 compared to the controls both at 15th
and 40th
day of plant growth as
influenced by inoculation with nitrifying bacteria (Fig 32). Significant results were
obtained for plant growth with the treatment T5 (Table 23 & 24).
Table 23: Effect of Nitrifying bacteria on plant growth promotion of Groundnut
JL-24 on 15th
Day.
S.No Seed
Treatment
% Seed
germination
No.of
leaves
Root
length
(cm)
Shoot
length
(cm)
Height
Root +
Shoot
(cm)
Weight
(gms)
Seedling
index
1 T0 70 8 10 22 32 5.20 2240
2 T1 100 13 15 25 40 6.50 4000
3 T2 100 16 17 23 33 5.70 3300
4 T3 100 15 13 22 35 5.80 3500
5 T4 100 18 19 28 47 7.25 4700
6 T5 100 22 21 30 51 10.12 5100
Table 24: Effect of Nitrifying bacteria on plant growth promotion of Groundnut
JL-24 on 40th
Day.
S.No Seed
Treatment
% Seed
germination
No.of
leaves
Root
length
(cm)
Shoot
length
(cm)
Height
Root +
Shoot
(cm)
Weight
(gms)
Seedling
index
1 T0 70 16 12 27 39 9.10 2730
2 T1 100 21 18 29 47 11.25 4700
3 T2 100 26 21 31 52 13.78 5200
4 T3 100 25 20 31 51 13.30 5100
5 T4 100 28 24 34 58 17.28 5800
6 T5 100 31 26 37 63 24.22 6300
The results in tables 23 and 24 had clearly shown significant increase in the
shoot length (30, 37 cm); root length (21, 26 cm) and 10.12, 24.22 gms of dry weight
per plant respectively during 15 and 40th
day of plant growth with the treatment T5.