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Chapter 14. Translation. 16 and 18 October, 2006. Overview. Translation uses the nucleotide sequence of mRNA to specify protein sequence. Each ORF specifies a polypeptide. - PowerPoint PPT Presentation
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16 and 18 October, 2006
Chapter 14
Translation
Overview• Translation uses the nucleotide sequence of mRNA to specify protein sequence.• Each ORF specifies a polypeptide.• Ribosome components and / or tRNAs recognize structures and sequences near the
5’ end of the transcript to identify the correct start codon.• tRNAs are highly modified short RNAs that are the adaptors between codons and
amino acids.• Amino acyl tRNA synthetases recognize structural features of tRNAs and charge
only the correct tRNA with the correct amino acid.• The large and small ribosomal subunits are extremely complex ribonucleoprotein
structures that dissociate and reassociate in each round of translation.• Peptide synthesis is catalyzed by a ribozyme, and proceeds in the N-to-C terminal
direction.• The ribosome uses three tRNA binding sites: A, P, and E.• tRNAs are delivered to the ribosome by EF-Tu.• EF-G GTP hydrolysis along with peptide bond formation drive ribosomal
translocation.• Translation termination involves release factors and GTP hydrolysis.• Translation-dependent RNA stability assures the degradation of damaged
messages.
Three possible open reading frames.
Shine-Dalgarno and Kozak Sequences
Kozak: Identification of Consensus
Kozak: Correct context makes a better barrier to downstream initiation.
tRNA Structures
Two-step charging of tRNA
Two-step charging of tRNA
tRNA Structural Elements Recognized by Aminoacyl-tRNA Synthetase
Synthetase-tRNA cocrystal
The Problem Solved by Editing Pockets
The ribosome cannot distinguish incorrectly charged tRNAs
There are twenty-one amino acids.
Prokaryotic transcription and translation are linked.
Composition of Ribosomes
Translation Overview
The Peptidyl Transferase Reaction
The Ribosome
Ribosome - tRNA
interactions
tRNA Interactions Within the Ribosome
Ribosome Channels
Initiation in Prokaryotes
Initiation in Prokaryotes
Initiation in Prokaryotes
Initiation in Eukaryotes
Start Codon Identification
Interactions between PABP and eIF4F circularize the transcript.
uORFs
IRES
Aminoacyl-tRNAs bind to the ribosome in a complex with EF-Tu. Ef-Tu
release requires correct base
pairing.
The ribosome also uses minor-groove interactions between the 16S rRNA and the codon-anticodon to
drive correct base pairing
Accommodation (rotation) of the tRNA strains the codon-anticodon
interaction causing
incorrectly paired tRNAs to
dissociate.
Peptidyl Transferase Ribozyme
Peptide bond formation and EF-G GTP hydrolysis drive translocation.
EF-G is a structural homolog of EF-Tu-tRNA
GTP hydrolysis drives conformational change.
Peptide anticodons allow release factors to recognize the stop codon.
GGQ on the RF-I
stimulates peptidyl
transfer to water.
RRF and EF-G stimulate dissociation
of the terminated ribosome.
tmRNA and SsrA rescue stalled complexes
Normal translation displaces exon-junction complexes.
Nonsense-mediated decay is caused by undisplaced exon-junction complexes.
In eukaryotes, abnormal termination causes message degradation.
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