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11/7/2013 CONFIDENTIAL 1
Mitchell Jones MD, PhD, MEng,
McGill University and
Micropharma Limited
The Human Body is a Community of Microbes
• Only 10% cells actually human in origin
• Remaining 90% are microorganisms
• > 1014 microbial cells and > 1015 viruses
• “Microbiota”
• Full complement of microbes in and on our bodies
• “Microbiome”
• Ecological community of microorganisms that share our body space and includes collective genomes
90of cells in the human body are
%our body space and includes collective genomes
• “Great plate count anomaly”
• In 1985 researchers demonstrated that cultivated bacteria represent small fraction of the microbes present in the environment
• Culture-independent high-throughput sequencing
• Greatly expanded repertoire of known microbes
• This has allowed for study of microbial:
• Structure and dynamics
• Relationships
• Substances produced and consumed
• Interaction with host
• Differences in health and disease
90of cells in the human body are
microorganisms
The Microbiome and Human Health
• “Forgotten organ”
• Microbiome plays major role in health
• Exposed surfaces are colonized
• skin
• respiratory system
• urogenital tract
• gastrointestinal tract
• Majority of microbes in the gut• Majority of microbes in the gut
• The known roles of gastrointestinal microbiome include:
• Metabolic• Absorbing indigestible carbohydrates, metabolizing
bile
• Synthesis• Production of vitamins K and B
• Immune• Promotion, maturation and development of innate
and cell mediated immune functions
• Maintenance of appropriate immune response to pathogens
• Maintenance of the intestinal barrier function
Microbiome Effects Our Metabolic Health“A disrupted microbiome has been associated
with a lengthening list of problems: obesity and
its opposite, malnutrition; diabetes (both type-1
and type-2); atherosclerosis and heart disease…”
- The Economist
“Scientists say a recent study suggests infants
treated with antibiotics in the first 6 months of
their life may predispose them to be overweight
11/7/2013 CONFIDENTIAL 4
their life may predispose them to be overweight
by the age of three… the earlier the exposure to
antibiotics, the more permanent the effect on
microbes in the intestine.”
- CTV News re: International Journal of Obesity
publication
“Oddly enough, the whole community starts to
resemble the microbes of someone with
metabolic syndrome – a collection of symptoms
that increase the risk of diabetes and heart
disease…”
- Discover Magazine re: Cell publication
Atherosclerosis and the Microbiome
• Oral and gut bacteria contribute to development of atherosclerosis and CVD
• Atherosclerotic plaque:
• Distinct microbiome
• “Core” signature species
• Chryseomonas (P. luteola) identified in all plaques
• Veillonella and Streptococcus in majority
• Bacterial DNA
• Correlated with leukocytes
Suggests plaque bacterial load determines • Suggests plaque bacterial load determines inflammatory status and stability
• Mechanism:
• Phagocytosis by macrophages at epithelial linings
• Reach activated endothelium of atheroma
• Leave blood stream to enter atheroma
• Transform into cholesterol-laden foam cell
• Evidence:
• Atherosclerosis-prone mice deficient in TLR2, TLR4 or MyD88 are resistant to dev. of atherosclerosis
• Gut microbiota also contributes to atherosclerotic disease through host lipid metabolism involving:
• Cholesterol catabolism and excretion
• Cholesterol absorption
• Bile metabolite associated inflammation
11/7/2013 CONFIDENTIAL 5
Microbiome, Cholesterol and Bile Acids
• Germfree animals
• Catabolize cholesterol more slowly
• Accumulate cholesterol in greater quantities,
faster rate
• Intestinal microflora responsible for accelerating
cholesterol catabolism
• Elevated levels of conjugated BA throughout • Elevated levels of conjugated BA throughout
intestine
• Significantly reduced fecal excretion
• Elevated serum cholesterol
• Mice treated with oral Abx show:
• Increased biliary BA output
• Decreased fecal bile output
• Increased serum cholesterol
• Thus, the deconjugation function of the
intestinal microbiome, results in
• Increased levels of circulating unconjugated bile
• Maintenance of normal levels of cholesterol
11/7/2013 CONFIDENTIAL 6
Microbiome Regulates Bile Metabolism
• Bile acid synthesis under negative control through bile acid nuclear receptor (FXR)
• Germ free (GF) animals have:
• Lower unconjugated and total BA
• Lower fecal excretion of bile
Reduced BA diversity• Reduced BA diversity
• BA diversity is lower in GF and antibiotic-treated tissues compared with conventional animals
• Bile acid receptors (TGR5, FXR, VDR, PXR) activation by:
• Unconjugated BA (CDCA, CA)
• Secondary BAs (DCA, LCA)
• Thus GF animals have little bile acid receptor agonist activity
11/7/2013 CONFIDENTIAL 7
Bile Acid Dysmetabolism and Heart Disease
• Cholesterol eliminated from the body by hepatic catabolism of cholesterol into bile acids
• Coronary Artery Disease (CAD) patients:• Significantly decreased bile
acid excretion levels than non-acid excretion levels than non-CAD patients
• Additional risk factor for CAD development
• Interestingly, studies of responders and non-responders to statin therapy have shown:• Metabolism of BAs by the gut
microbiome is associated with a response to statin therapy
11/7/2013 CONFIDENTIAL 8
Design of First Randomized Controlled Trial
Objective: To evaluate the cholesterol lowering efficacy and safety of a L. reuteri NCIMB 30242 yogurt formulation in mildly hypercholesterolemic adults.
Design: Randomized, double blind, placebo controlled, parallel arm, multi-center trial
Investigational Product: 1 x 1010 CFU BID in yogurt format
Duration: 6 week interventionDuration: 6 week intervention
ITT: N 114 subjects (n 58 placebo, n 56 treatment)
Primary endpoint: LDL-C at 6 week endpoint relative to placebo
Secondary endpoints: LDL-C, TC, apoB-100, non-HDL-C, HDL-C, TG, biochemistry, hematology, fecal microflora, fecal deconjugated bile
Additional endpoints: Demographic data, diet journal data, GI questionnaire data
ClinicalTrials.gov Identifier: NCT01185795
11/7/2013 CONFIDENTIAL 9
Jones et al. Br J Nutr. 2012
L. reuteri NCIMB 30242 Lowers LDL-C 8.9%
Over 6 Weeks• LDL-C: -8.92% (P=0.02)*
• TC: -4.81% (P=0.03)*
• apoB-100: -6.81% (P=0.046)*
• non-HDL-C: -6.01% (P=0.025)*
• No change in TG and HDL-C*
• Balanced diet income between
11/7/2013 CONFIDENTIAL 10
• Balanced diet income between treatment groups**
• No change in fecal bile acids*
• No adverse events
• No change in safety parameters that considered associated with treatment or clinically significant
*ANCOVA/Kruskal-Wallis
**ANOVA/Kruskal-Wallis
Jones et al. Br J Nutr. 2012
Design of Second Randomized Controlled Trial
Objective: To evaluate the cholesterol lowering efficacy and safety of a L. reuteri NCIMB 30242 capsule formulation in mildly hypercholesterolemic adults over 9 weeks.
Design: Randomized, double blind, placebo controlled, parallel arm, multi-center trial
Investigational Product: 2.9 x 109 CFU (100mg) BID in capsule formatBID in capsule format
Duration: 9 week intervention
ITT: N 127 subjects
Primary endpoint: LDL-C at 9 week endpoint relative to placebo
Secondary endpoints: LDL-C, TC, apoB100, apoA1, non-HDL-C, HDL-C, TG, hs-CRP, fibrinogen, free and esterified cholesterol, bile acid profile, plant sterols, biochemistry, hematology
Additional endpoints:
Demographic data, diet journal data, GI questionnaire data
ClinicalTrials.gov Identifier: NCT01341613
11/7/2013 CONFIDENTIAL11
Jones et al. Eur J of Clin Nut. 2012
L. reuteri NCIMB 30242 Lowers LDL-C 11.6%
Over 9 Weeks
• L. reuteri NCIMB 30242
resulted in significant
reductions in LDL-C of
11.64%, TC of 9.14%,
non-HDL-C of 11.30%
11/7/2013 CONFIDENTIAL12
non-HDL-C of 11.30%
and ApoB-100 of
8.41% at the 9 week
endpoint compared to
placebo.
• Results were significant
even at 6 weeks when
compared to placebo .
Jones et al. Eur J of Clin Nut. 2012
ANCOVA or Mann Whitney U; *P<0.05, **P<0.01, ***P<0.001
L. reuteri NCIMB 30242 Improves CVD Risk
• L. reuteri NCIMB
30242 resulted in
significantly improved
lipid ratios at the 6
week point and 9
week endpoint and
significantly reduced
Placebo (n 61) L. reuteri (n 66)
Mean (SD) Mean (SD) P
LDL-C/HDL-C
AbsΔ 0.21 (1.16) -0.22 (0.88) 0.005b
RelΔ (%) 8.91 (33.37) -4.48 (21.24) 0.006b
apoB-100/apoA-1
AbsΔ -0.02 (0.19) -0.09 (0.20) 0.034b
RelΔ (%) -0.74 (22.82) -9.74 (17.75) 0.026a
Fibrinogen
Table. Changes in lipid and apolipoprotein ratios and cardiovascular risk parameters
11/7/2013 CONFIDENTIAL 13
significantly reduced
CVD risk factors
including hs-CRP and
fibrinogen compared
to placebo at the 9
week endpoint.
Fibrinogen
AbsΔ (g/l) 0.48 (0.87) -0.09 (0.96) 0.004b
RelΔ (%) 17.19 (35.67) 2.95 (26.71) 0.004b
hs-CRP (mg/l) *
Week 0 1.63 (0.90-3.25) 2.00 (0.80-4.43)0.005c
Week 9 2.55 (1.50-5.40) 1.87 (0.75-5.10)* Geometric mean (IQR)a ANCOVA b Mann-Whitney Wilcoxon testc Two-factor repeated measures ANOVA
AbsΔ, Absolute change; RelΔ, Relative change; LDL-C, LDL-cholesterol;
HDL-C, HDL-cholesterol; apoB-100, apolipoproteinB-100; apoA-1,
apolipoproteinA-1
Jones et al. Eur J of Clin Nut. 2012
***
L. reuteri NCIMB 30242 Improves CVD Risk Profile
hs-CRP CVD Risk Profile Fibrinogen CVD Risk Profile
**• L. reuteri NCIMB
30242 capsules
resulted in a
greater
percentage of
*
14%
19%
10%
12%
14%
16%
18%
20%
% o
f p
ati
en
ts
Placebo
L. reuteri
NCIMB 3024222%
27%
15%
20%
25%
30%
% o
f p
ati
en
ts
Placebo
L. reuteri
NCIMB 30242
Figure: % of patients lowering hs-CRP risk profile after
taking placebo or L. reuteri NCIMB 30242 over 9 weeks.
Criteria for hs-CRP levels and associated CVD risk: low
risk < 1mg/l; average risk 1-3 mg/l; high risk > 3mg/l.
Figure: % of patients lowering fibrinogen risk profile
after taking placebo or L. reuteri NCIMB 30242 over
9 weeks. Criteria for fibrinogen levels and
associated CVD risk: low risk < 2.36 g/l; average risk
2.36 - 2.77 g/l; high risk > 2.77 g/l.
percentage of
patients reducing
hs-CRP and
fibrinogen CVD
risk profile at the
9 week endpoint
when compared
to placebo.
2%
4%
5%5%
0%
2%
4%
6%
8%
10%
Risk profile
decreased by 2
risk groups
Risk profile
decreased by 1
risk group
Risk profile
decreased by
at least 1 risk
group
% o
f p
ati
en
ts
0%
2% 2%
5%
0%
5%
10%
15%
Risk profile
decreased by 2
risk groups
Risk profile
decreased by 1
risk group
Risk profile
decreased by at
least 1 risk
group
% o
f p
ati
en
ts
L. reuteri NCIMB 30242 Increases Gut BSH
Activity
• L. reuteri NCIMB 30242
resulted in a significant
increase of 1.00 µmol/l,
when compared to
placebo, in circulating
11/7/2013 CONFIDENTIAL15
placebo, in circulating
deconjugated bile acids
at the 9 week endpoint.
• This suggests bile salt
hydrolysis in the GI
lumen and supports the
MOA.Placebo (n 61) L. reuteri (n 66)
Mean (SD) Mean (SD) P*
Conjugated Bile Acids (µmol/l)
Week 0 2.33 (3.05) 2.43 (2.85)0.738
Week 9 2.22 (2.08) 2.49 (3.20)
Deconjugated Bile Acids (µmol/l)
Week 0 1.81 (2.79) 1.82 (2.48)0.025
Week 9 1.62 (2.02) 2.64 (3.64)
* Two-factor repeated measures ANOVA
Table. Conjugated and deconjugated bile acid concentrations at baseline and
endpoint
Jones et al. Eur J of Clin Nut. 2012
Reduced Sterol Absorption Responsible for
Cholesterol Reduction• L. reuteri NCIMB 30242
capsules resulted in
significant reductions in
campesterol of 41.5%,
sitosterol of 34.2%,
stigmasterol of 40.7% and
Placebo (n 61) L. reuteri (n 66)
Mean (SD) Mean (SD) P*
Campesterol (ng/mL)
Week 0 2840.8 (1471.0) 3064.2 (1860.9)0.025
Week 9 3438.3 (2041.2) 2805.0 (1649.8)
Table. Plant sterols concentrations at baseline and endpoint
11/7/2013 CONFIDENTIAL16
stigmasterol of 40.7% and
total plant sterols of
38.9%, when compared
to placebo, at the 9 week
endpoint.
• This suggests reduced
absorption of cholesterol
as PS are surrogate
markers for cholesterol
absorption.
0.025Week 9 3438.3 (2041.2) 2805.0 (1649.8)
Sitosterol (ng/mL)
Week 0 1368.9 (682.1) 1520.1 (891.1)0.031
Week 9 1636.8 (945.3) 1428.9 (868.5)
Stigmasterol (ng/mL)
Week 0 68.3 (51.3) 68.4 (49.4)0.042
Week 9 81.2 (78.7) 62.0 (54.2)
Total PS (ng/mL)
Week 0 4278.0 (2156.1) 4652.7 (2756.9)0.027
Week 9 5156.4 (3008.7) 4295.9 (2524.6)* Two-factor repeated measures ANOVA on log transformed values
PS, Plant sterols.
Jones et al. Eur J of Clin Nut. 2012
2
6
10
Ch
an
ge
in
DB
A (
nm
ol/
l)
Placebo
L. reuteri
NCIMB 30242
Bile Deconjugation Correlated to Reductions
in LDL-C• A significant association
was observed in subjects
taking L. reuteri NCIMB
30242 (Spearman
correlation, r=-0.369,
P=0.003) while no
association was
observed in subjects
-10
-6
-2-2 -1 0 1 2
Ch
an
ge
in
DB
A (
nm
ol/
l)
Change in LDL-C (mmol/l)
11/7/2013 CONFIDENTIAL 17
Figure: Individual changes in plasma deconjugated bile acids (DBA) and
serum LDL-cholesterol (LDL-C) over the intervention period.
observed in subjects
taking Placebo
(Spearman correlation,
r=0.086, P=0.516).
• It was also noted that
the regression
coefficients of the
Placebo and L. reuteri
NCIMB 30242 groups
were significantly
different (P=0.012).
Jones et al. Eur J of Clin Nut. 2012
0
1
2
3
3 5
Ba
seli
ne
DB
A (
µm
ol/
l)
Baseline LDL-C (mmol/l)
-8
-3
2
7
12
Re
lati
ve
ch
an
ge
ov
er
inte
rve
nti
on
pe
rio
d (
%)
Placebo
Cardioviva
L. reuteri NCIMB 30242 Reduces Cholesterol
Esters Assoc. with CVD• L. reuteri NCIMB 30242
capsules reduced total
cholesteryl esters by
6.3% (P=0.015)
compared to placebo.
• Cholesteryl ester
saturated fatty acids by
8.8% (P=0.002) -13
Total cholesteryl
esters
Total saturated
cholesteryl esters
Palmitic acid
(16:0)
Stearic acid (18:0) Total saturated
cholesteryl esters
+ Oleic acid (18:1)
Re
lati
ve
ch
an
ge
ov
er
inte
rve
nti
on
* ***** **
• Over 80% of circulating cholesterol is bound as a CE
• Epidemiologic studies show that CE are most closely associated
with CVD (Gertler et al.; Circulation)
• Lower levels of cholesterol esters have been associated with
reduced CVD risk.
• In patients with hypercholesterolemia, CEs are highly saturated
• Saturated + oleic CEs are found in atherosclerotic plaques
8.8% (P=0.002)
compared to placebo.
• Of the saturated fatty
acids, palmitic acid and
stearic acid were
reduced by 8.8%
(P=0.001) and 16.8%
(P=0.003) respectively
as compared to placebo.
• Cholesteryl ester
saturated fatty acids +
oleic acid were reduced
by 5.2% (P=0.039) as
compared to placebo.Jones et al. Heart and Stroke Sci Sessions. 2012
L. reuteri NCIMB 30242 increases circulating
25-hydroxyvitamin D
• No significant differences between
capsule groups in serum vitamin A,
vitamin E, or β-carotene or dietary
intake over the intervention period
(P<0.05)
11/7/2013 CONFIDENTIAL 19
(P<0.05)
• L. reuteri NCIMB 30242 increased
serum 25-hydroxyvitamin D by 14.9
nmol/L, or 25.5%, over the
intervention period, which was a
significant mean change relative to
placebo of 17.1 nmol/L, or 22.4%,
respectively (P<0.003)
Jones et al. J Clin Endocrinol Metab. 2013
Serum bile acids contribute to improved
glucose and lipid metabolism
• Improved lipid and glucose
metabolism may be
mediated by bile acids
through TGR5 mechanismthrough TGR5 mechanism
• Total BA increased following
gastric bypass surgery
• Total BA inversely correlated
with 2h post meal glucose
and fasting triglycerides and
positively correlated with
adiponectin and peak GLP-1
11/7/2013 CONFIDENTIAL 21Patti et al. Obesity 2009
Dysbiosis is a pathophysiologic cause of IBD
• IBD is caused by an
abnormal immune
response to the gut
bacteria in people
who are genetically
11/7/2013 CONFIDENTIAL 22
who are genetically
predisposed.
• Reduced bile acid
hydrolysis (BSH)
activity a significant
factor in the onset
and progression of
IBD as immune
response
Duboc et al. Gut. 2012.
bsh gene reduced in Microbiome of IBD
patients
• Crohn’s patients have
reduced BSH gene
abundance.
• Significant depletion in
BSH gene in the
11/7/2013 CONFIDENTIAL 23
Ogilvie et al. Gut. 2012.
BSH gene in the
Firmicutes phylogenic
division containing
Lactobacilli.
• UC patients may have
increased BSH activity
in the Actinobacteria
division
BSH activity reduced in IBD and improved in
remission
• IBD patients have
significantly reduced
fecal BSH activity which
is improved during
remission.
• Both the conjugation of
11/7/2013 CONFIDENTIAL 24Duboc et al. Gut. 2012.
• Both the conjugation of
bile acids and the
presence of appropriate
quantities of secondary
bile acids appear to play
a role.
• FXR and TGR5 are
sensors for the products
of appropriate bile acid
metabolism.
Bile acid Regulation of Immune cells
• Bile acids are the primary ligands for bile acid receptors:
• FXR (nuclear)
• TGR5 (cell surface)
• FXR and TGR5 are highly expressed
• GI and liver tissues
• Immune monocytes and macrophages• Immune monocytes and macrophages
• Metabolic products of deconjugation (BSH) and dehydroxylation (7αDH) are the most potent ligands
• LCA>CDCA>DCA>CA
• Bile acid signaling in macrophages and monocytes
• Inhibition of NF-κB, Il-6, Il-1β and TNFα
• Patients with IBD (Crohn’s and UC)
• Alterations in commensal bacteria
• Diminished concentration of bile acids
11/7/2013 CONFIDENTIAL 25
Brestoff et al. Nat Immuno. 2013.