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1 INTERVERTEBRAL DISC DEVELOPMENT IN CHICKENS By YASMIN S. MOHIUDDIN A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2011

By YASMIN S. MOHIUDDIN

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Page 1: By YASMIN S. MOHIUDDIN

1

INTERVERTEBRAL DISC DEVELOPMENT IN CHICKENS

By

YASMIN S. MOHIUDDIN

A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE

OF MASTER OF SCIENCE

UNIVERSITY OF FLORIDA

2011

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© 2011 Yasmin S. Mohiuddin

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To my mom and dad

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ACKNOWLEDGEMENTS

I thank my mentor, Brian Harfe, and my other committee members for their

guidance. I also thank everyone in the Harfe and Cohn labs, for their help along the

way. I would like to specially thank Kyung-Suk Choi and Jen Maier, for their assistance

in obtaining mouse wild-type data. Lastly, I thank my family and friends, for their

constant support.

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TABLE OF CONTENTS

page

ACKNOWLEDGEMENTS ............................................................................................... 4

TABLE OF CONTENTS .................................................................................................. 5

LIST OF FIGURES .......................................................................................................... 7

ABSTRACT ..................................................................................................................... 8

CHAPTER

1 INTRODUCTION AND AIMS .................................................................................. 10

Development of the Intervertebral Disc in Vertebrates ........................................... 10 Cellular Origin of the Nucleus Pulposus.................................................................. 11

Avian Vertebral Development ................................................................................. 11 Composition of the Intervertebral Discs .................................................................. 12 Sonic Hedgehog ..................................................................................................... 12

Scleraxis ................................................................................................................. 13 Aims of Thesis ........................................................................................................ 13

2 METHODS .............................................................................................................. 16

Chicken Incubation and Harvest ............................................................................. 16

Paraffin Embedding ................................................................................................ 16 Cryo – Embedding .................................................................................................. 17

Histological Staining ............................................................................................... 17 Probe Preparation ................................................................................................... 17 Whole Mount In-situ Hybridization .......................................................................... 18

Section In situ Hybridization .................................................................................... 18

3 RESULTS ............................................................................................................... 19

Histological Analysis of intervertebral discs ............................................................ 19 Sonic Hedgehog Gene Expression ......................................................................... 20

Scleraxis Gene Expression ..................................................................................... 21

4 DISCUSSION ......................................................................................................... 26

Intervertebral Development Analysis Via Collagen Staining ................................... 26 Sonic Hedgehog Effect Pre and Postnatal .............................................................. 27 Scleraxis Effects and Continuation through Birth .................................................... 27

APPENDIX: LIST OF REAGENTS ................................................................................ 29

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LIST OF REFERENCES ............................................................................................... 31

BIOGRAPHICAL SKETCH ............................................................................................ 33

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LIST OF FIGURES

Figure page

1-1 4 Week old mouse intervertebral disc ................................................................. 15

1-2 Mouse and proposed chicken intervertebral disc model ..................................... 15

3-1 Histological Analysis of Early Chicken Development .......................................... 22

3-2 Histological Analysis of Late Chicken Development ........................................... 23

3-3 Serial Sections of HH35 Chick vertebral column ................................................ 23

3-4 Sonic Hedgehog Gene Expression in Early Chicken Development .................... 24

3-5 Sonic Hedgehog Gene Expression at HH35. ..................................................... 24

3-6 Sonic Hedgehog Gene Expression at HH44. ..................................................... 24

3-7 Scleraxis Gene Expression in HH19 and HH27 Chickens .................................. 25

3-8 Scleraxis Gene Expression in HH35 and HH44 Chickens. ................................. 25

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Abstract of Thesis Presented to the Graduate School of the University of Florida in Partial Fulfillment of the Requirements for the Degree of Master of Science

INTERVERTEBRAL DISC DEVELOPMENT IN

CHICKENS

By

Yasmin S. Mohiuddin

August 2011

Chair: Brian D. Harfe Major: Medical Sciences

Vertebrate vertebral columns are placed under large amounts of stress every day.

In order to help relieve this stress between vertebrae, intervertebral discs are present to

absorb shock and provide cushioning support; however over time these discs

deteriorate which can result in serious medical problems. The intervertebral disc is

composed of three parts: a jelly-like center called the nucleus pulposus that is

surrounded by the cartilaginous annulus fibrosis. These two structures are bordered by

anterior and posterior endplates. In order to obtain a more thorough understanding of

disc development, we have investigated the intervertebral region of chickens. With the

well-studied mouse model to serve as a comparison, we examined wild-type chicken

disc development to determine how disc formation varied throughout vertebrate

evolution beginning with chickens. Our initial examination of chickens revealed that

mouse and chicken disc development were vastly different. It appears that chicken

discs lack a nucleus pulposus. Currently, we are examining factors known to be

involved in the differentiation of the mouse nucleus pulposus to determine if these

factors play a similar role during chicken intervertebral development. One signaling

pathway that we are currently examining in detail is the Sonic Hedgehog (Shh) pathway.

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Shh is required for differentiation of multiple tissues including the limb, brain, and spinal

cord and we have shown that this signaling pathway plays an essential role in formation

of the mouse nucleus pulposus. The long-term goal of this project is to understand the

molecular mechanisms responsible for forming a normal intervertebral disc so that cell

or molecular-based therapies can be developed to relieve back pain.

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CHAPTER 1 INTRODUCTION AND AIMS

Development of the Intervertebral Disc in Vertebrates

Intervertebral disc are structures present in mammalian spinal columns. The role

of intervertebral discs is to help relieve stress between bony vertebrae. With age these

discs can deteriorate and lose their structural integrity causing severe pain. According to

the National Institutes of Health 8 out of 10 people will suffer from back pain at some

point during their lives (NIH, 2011). Some of these conditions affecting disc structure

include bulging, herniated, and thinning discs. In addition to these conditions disc

degeneration due to aging still remains one of the primary causes of back pain (Hunter

et al. 2003).

Development of intervertebral discs follows similar pathways in all mammals and

results in intervertebral discs that are composed of three parts (Alini, 2008). The center

of each disc is composed of jelly like material called the nucleus pulposus. Surrounding

this structure is the annulus fibrosis which is comprised primarily of cartilage. Finally on

both sides of the disc are the anterior and posterior endplates (Humzah and Soames,

1988). When examining a completely developed mammalian adult intervertebral disc

using collagen staining reagents, Picrosirius Red and Alcian Blue on 4 week old paraffin

embedded mice, the three components can be easily identified. (Figure 1-1)

In our laboratory we use the mouse model system to model human disc

development and disease. In mice, the embryonic notochord is present from E7.5 until

E12.5 (Choi, 2008). Previous work from our laboratory has demonstrated that the

embryonic notochord forms the middle part of the disc called the nucleus pulposus

(Choi et al, 2008). The nucleus pulposus persists throughout adult life in both mice and

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humans. Figure 1-1 shows the center nucleus pulposus (NP), surrounded by the

collagen rich annulus fibrosis (AF). In blue the anterior and posterior endplates can be

seen on their respective sides bordering the vertebral bone. As an organism ages, it is

the cells that compose the nucleus pulposus that have been proposed to be responsible

for maintaining disc structure. These cells, which originate from the notochord, may

serve as disc stem cells and may be able to replace damaged or diseased nuclei

pulposi throughout life (Hunter, 2003).

Cellular Origin of the Nucleus Pulposus

Using a previously created SHHcre allele (Harfe et al., 2004), all cells expressing

Sonic Hedgehog were made to express CRE protein, including those in the embryonic

notochord. These mice were crossed with the CRE reporter lines R26R or

ROSA26R:EYFP. Mice containing both the Shhcre and a reporter allele activated

reporter expression via CRE recombinase driven by the Shh promoter. All cells

expressing Shh and any of their cells descendants are labeled throughout the life of the

animal.

At E10.5, in embryos in which CRE expression was activated using the Shhcre

allele, a long rod-like notochord is visible. By E12.5 the notochord has begun to form

bulges and by E15.5 clearly observed nuclei pulposi have formed from the Shhcre

expressing cells (Choi et al., 2008).

Avian Vertebral Development

Intervertebral development in chickens has not been thoroughly documented in

the published literature. The current model suggests that the vertebral bodies arise from

the somites (Christ, 2000).

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Future vertebral tissue begins as a part of the paraxial mesoderm, in a portion

known as the segmental plate. Via epithelialization of this tissue, the first 28 pairs of

somites are formed by primary gastrulation (Christ, 2000). Avian somites are

surrounded by a basement membrane and connected to other structures via the

extracellular matrix, such as the notochord and neural tube. Between day 2 and 3 of

embryonic development, the early somites undergo an epithelial to mesenchymal

transition and begin to form the sclerotome. Each somite is split along the Ebner’s

fissure dividing each one into a cranial and a caudal half (Christ, 2000). When vertebrae

are forming, the cranial half of one somite fuses with the caudal half of an adjacent

somite and forms one vertebral body and the intervertebral tissue. In particular the

intervertebral discs are thought to arise from the somitocoele–derived cells, which are

cells located in the somitic core that retain their original mesenchymal organization.

(Christ et al., 2004).

Composition of the Intervertebral Discs

Figure 1-2 models the difference between the current mouse disc structure and

our proposed model of avian intervertebral structure. The mouse model is composed of

the three structures mentioned previously. Currently, in avians it is known this type of

disc is not present, but tissue of unknown origin and composition is present between

vertebrae. One of the goals of this thesis is to characterize this tissue, and determine if

there are any similarities to analogous mouse disc structures.

Sonic Hedgehog

Three homologues of the Hedgehog gene exist in vertebrates – Indian Hedgehog,

Desert Hedgehog, and the one in particular this study is investigating, Sonic Hedgehog

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(Shh). Shh plays an essential role as a morphogen in vertebrate development in the

limb, brain, spinal cord, and other areas (McMahon, 2003).

Excretion of Shh from Sonic Hedgehog producing cells activates the Shh pathway.

Extracellular Shh binds with Patched (Fuse, 1999), and activates the trans-membrane

protein Smoothened (Murone et al., 1999). In the presence of activated Smoothened,

Gli proteins enter the nucleus and act as transcriptional activators (Hooper and Scott,

2005).

Scleraxis

Scleraxis is a transcription factor that is expressed in developing tendons and the

annulus fibrosis (Deries et al., 2010). It is expressed in cells that develop into tendon

tissue and other muscle attachments. Additionally scleraxis plays a role in mesoderm

formation and is present in the embryonic mesenchymal tissue during somite and

vertebral development (Shukunami et al., 2006).

Aims of Thesis

The goal of this study is to characterize avian vertebral development utilizing the

chicken model to determine if formation of the intervertebral discs has been conserved

between mammals and birds. The instances of back pain due to problems with disc

maintenance are increasing rapidly in humans. Currently, there are very few therapies

to aid in disc repair. Most therapies are geared towards relieving pain associated with a

degenerating disc and not the underlying defect. In this work we performed experiments

designed to uncover molecules and genetic pathways that are required for formation of

the discs.

In Aim 1, I examined the developing chicken intervertebral disc at various stages

using histological stains to determine what tissues were present during these stages.

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Intervertebral disc development in mice was examined, and stages were chosen that

matched with comparable chicken stages. These comparisons were based on limb

development. Since the notochord forms nuclei pulposi between E11.0 and E16.0 in

mice, analogous chicken stages preceding, during, and after these time points were

chosen for analysis in chickens. The stages chosen were E8.5, E12.5, E14.5 and E18

for mice, which comprises of stages from pre-intervertebral disc formation through the

presence of fully formed discs in newborn. For our chicken samples, we chose Hamilton

and Hamburger (HH) stages 19, 27, 35, and 44 (Hamburger and Hamilton, 1951). By

histologically examining development of the discs at these stages we can determine

when structures are forming and there relative shape compared to the previously

characterized mouse model.

Our second aim is to determine Sonic Hedgehog expression in the notochord and

spinal column as the chicken develops. Since Shh is known to be expressed throughout

embryonic development in mice, and proposed to help maintain disc structure after they

form in adult mammals (Hunter, 2003), observing the duration and loaction of Shh

expression in chickens may explain the developmental difference between the mouse

and chicken vertebral structure.

The last aim is to monitor the expression patterns of scleraxis in developing

chicken embryos. Since scleraxis is expressed in the annulus fibrosis, monitoring the

different stages of chicken development will allow us to see if an annulus is present in

chickens. If present, expression patterns will also show annulus structural changes

throughout development, allowing for a better understanding of what takes place in the

chicken vertebral column during disc formation.

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Figure 1-1. 4 Week old mouse intervertebral disc, stained with picrosirus red (collagens) and alcian blue (Glycosaminoglycans, GAGs), NP = Nucleus Pulposus, AF = Annulus Fibrosis, V = Vertebrae

Figure 1-2. Mouse and proposed chicken intervertebral disc models. V = Vertebrae NP = Nucleus Pulposus, AF = Annulus Fibrosis.

V

V

AF

NP End Plates

AF End Plates Uncharacterized

“Intervertebral Disc”

Tissue

Mouse Chicken

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CHAPTER 2 METHODS

This chapter contains protocols including a list of solution and reagents used to

conduct the experiments for this study.

Chicken Incubation and Harvest

Fertilized chicken eggs were ordered from Charles River and are placed in an

incubator at 38°C. The eggs were incubated for the time it takes to reach each stage of

interest, according to the Hamburger and Hamilton developmental stages (Hamburger

and Hamilton, 1951). Upon reaching the correct incubation time, the chicken embryos

were harvested and fixed overnight in 4% PFA. The chicken samples used for these

experiments were harvested at HH 19, 27, 35, and 44. These stages were

representative of the overall chick growth cycle in an egg, including the time for potential

intervertebral disc development.

Paraffin Embedding

After fixing overnight in 4% PFA, samples were decalcified in CalEx (Fisher) if

necessary. For stage HH 35 and HH 44 samples, vertebral columns were dissected out

prior to decalcification in order to minimize excess tissue. Samples were washed three

times in PBS for 20 minutes each. Following the washes, samples were dehydrated in

an ethanol series starting with a 30 minute wash in 70% EtOH, followed by two, 30

minute washes in 95% EtOH, and finally completely dehydrated by three, 20 minute

washes in 100% EtOH. The samples then proceed through three, 10 minute washes in

xylenes to clear the tissue. Next the tissue was placed in an incubator and set in six, 20

minute rinses in blue ribbon embedding material. Finally the samples are embedded in

paraffin and stored at room temperature.

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Cryo – Embedding

Embryos were removed from overnight 4% PFA fix and washed in DEPC water

twice for five minutes each. Samples were then placed on a rocker in 15% sucrose at

room temperature until the embryos sunk, followed by a 30% sucrose solution overnight

at 4°C. The following day the embryos were placed in a 50/50 mixture of 30% sucrose

and Optimum Cutting Material (OCT) at room temperature approximately 23°C for 3-4

hours. The samples were then embedded in 100% OCT and stored at -80°C until

needed.

Histological Staining

Paraffin embedded samples were sectioned using a Leica microtome at 7µm

sections and floated onto slides. After drying, the slides are placed in a rack and taken

through the following series of solutions for the times given:

Xylenes – 10 minutes

100% Ethanol – 10 minutes

95% Ethanol – 10 minutes

70% Ethanol – 10 minutes

Distilled Water – 5 minutes

Alcian Blue (1.0g alcian blue 8GX + 97 ml water) – 15 minutes

Water – 10 minutes

Picrosirius Red– 45 minutes

0.5% Acidified Water – 5 minutes

95% Ethanol – 2 minutes

100% Ethanol – 2 minutes

Xylenes – 5 minutes

The slides where then spotted with permount and cover slipped. Slides were examined

using Leica DM2500 compound microscope.

Probe Preparation

Plasmids were taken from Harfe Lab stock and grown on LB – Ampicillin plates.

Colonies were picked and grown in LB media overnight at 37°C. Bacterial colonies were

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pelleted and DNA was extracted using Qiagen Miniprep Kit. After purification the DNA

was digested and mixed with reagents for probe assembly. Digested DNA was mixed

Roche 10x transcription buffer, DIG-labeled nucleotide mix, RNase inhibitor, RNA

polymerase and incubated for two hours. Probe was then purified through Roche mini

quick RNA spin columns and stored at -80°C until needed.

Whole Mount In situ Hybridization

Samples selected for whole mount In-Situ hybridization were dehydrated after

overnight fixation following harvest. Whole mount analysis was only done on HH 19 and

HH 27 embryos due to their young age and difficulty of isolating vertebral column. The

whole embryos were then dehydrated through a methanol series, permeabilized and

incubated with probe. After two days of washes the samples were put in a color solution

which produces a dark purple precipitate after reacting with the alkaline phosphatase

found in AP-DIG labeled antibody to bind to probe and antibody.

Section In situ Hybridization

OCT embedded samples were serially sectioned to 12µm, and lifted onto slides.

Sections were surrounded by a DAKO pen to build a hydrophobic barrier. The sections

are acid hydrolyzed with 0.2M HCl, washed with DEPC-PBS, permeabilized with

Proteinase K and then fixed in 4% PFA. Probe was applied overnight. The following day

the slides were passaged through a series of SSC washes, after which the slides were

blocked with 10% goat serum and KTBT solution. Antibody was applied overnight at

4°C. The last day the slides were placed in a color solution and developed at room

temperature.

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CHAPTER 3 RESULTS

Histological Analysis of intervertebral discs

In order to observe formation of chicken intervertebral discs during development

histological staining of embryos was conducted with picrosirius red and alcian blue.

These reagents stain red for collagen and blue for glycosaminoglycans respectively. In

the early stages, HH19 and HH27 of chick embryogenesis, the notochord running the

lateral length of the body was clearly visible (Figure 3-1). At our chosen comparable

mouse stage E12.5 which is equated to HH27, the notochord is observed in the same

form. This leads us to conclude that early development in both organisms is similar.

As the chicken embryo develops to stage HH27, the notochord is still distinctly

visible, while the vertebral body begins to undergo ossification. The two remaining

stages that were examined, HH35 and HH44 are two later stages which correspond to

mouse stages in which intervertebral discs have already developed. In chickens at

these stages the notochord still persisted (Figure 3-2). In contrast, no notochord was

observed in adult chickens. These data suggests that the notochord does not exist

throughout postnatal life. It is currently unclear the exact developmental stage when this

structure is no longer present in adult chickens.

Unlike the chicken, the mouse notochord does not progress in the same manner.

In Figure 3-2 mouse vertebral sections at E14.5 and at P0 clearly delineated nuclei

pulposi that arise from the notochord presumably through cell migration

In chickens, when we examined stage HH35 onward, there were noticeable

collagen rings that formed between vertebrae. Serial sections examined from entire

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vertebral columns showed the collagenous rings to have a central area, where the

notochord passed through to maintain its rod-like structure.

Sonic Hedgehog Gene Expression

The second aim of this project was to determine how the signaling protein, Sonic

Hedgehog, was expressed during chicken disc formation. It is known that SHH is

expressed by notochordal cells and the floor plate of the neural tube (Fan and Tessier,

1994). However it still remains unknown if these structures continue to produce this

developmental signal past HH29. In our experiment we monitored sonic expression

through development and expression was found in each stage examined.

Sonic Hedgehog expression was found in the notochord at HH19 and in both

notochord and floorplate in HH27. As the chick develops the expression persists in the

notochord and when sagittal sections are examined in both chick and mouse at

comparable growth stages of HH35 and E14.5 Shh expression was visible in the chick

notochord and mouse nuclei pulposi. These data suggest that both groups of cells had

similar cell origins and expressed at least one of the same genes.

As the chick develops, the notochord continues to be observed and maintained as

a rod like structure, whereas in the mouse at an equivalent developmental stage,

notochord cells were observed to form nuclei pulposi within the center of the discs.

Examining the notochord structure from HH35 and HH44 embryos, the notochord

remained the same. When compared with a P0 mouse, the Shh expression from E14.5

to P0 remains localized to the nuclei pulposi.

From these experiments we can conclude that Sonic Hedgehog expression

persists in the notochord throughout the entire embryonic development of the chicken.

As shown in figure 3-5 and figure 3-6, expression is present in the mouse at E14.5 and

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P0, However the cells that were found to express Shh in mice were also found to

condense into bulges and eventually form the disc center nuclei pulposi.

Scleraxis Gene Expression

In order to understand the function of the rod-like notochord that persists

throughout the chick’s developmental period, we conducted experiments to monitor

scleraxis expression. Scleraxis is a tendon marker that in mice is expressed in the

annulus fibrosis, the cartilaginous ring surrounding the nucleus pulposus (Deries et al,

2010). Using this marker, we examined early stages of disc formation, HH19 and HH27,

in chicken. At early stages, clear expression was observed in the anterior and posterior

borders of the somites. (Shukunami et al., 2006).

In the later stages, HH35, of chick development it has previously been shown that

scleraxis is expressed in the developing tendon at the anterior and posterior edges of

the developing vertebrae (Schweitzer et al, 2001). As seen in figure 6 whole mount RNA

in situ hybridization at HH19 there is expression in the tissue immediately surrounding

the notochord (arrow) As the embryo progresses up to the pre-disc (E12.5) equivalent

at HH27, scleraxis staining was found as published on the anterior and posterior

borders of the somites. (Figure 3-7 and 3-8)

In these later stages, expression can be seen in bordering the vertebrae. At the

final stage examined, HH44, scleraxis expression was difficult to interpret due to high

background levels. However, staining still persisted into this late stage. Additional

experiments are being conducted to verify its exact expression location at this late

stage.

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Figure 3-1. Histological analysis of early chicken development visualized with picrosirius red and alcian blue. A) The vertebral region of chick at HH19. B) The verterbral region of chick at HH27. C) The vertebral region of mouse at e12.5. The notochord is present in both organisms at HH19 and HH27 in chickens and E12.5 mouse.

Mouse E12.5

NC V

V

V

Chick Chick

C

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Figure 3-2: Histological analysis of late chicken development stained with picrosirius red (collagens) and alcian blue (GAGs). A) Chicken section at HH35. B) Chicken section at HH44. C) Adult chicken section. D) Mouse vertebral section at E14.5. E) Mouse vertebral section at P0. In chickens, the notochord (arrow) persists until birth but is not visible in adults. Rings of collagen (Red – labeled with *) were visible from HH35 till birth. NP = nucleus pulposus, V = vertebra

Figure 3-3. Serial sections of HH35 chick vertebral column stained with picrosirius red and alcian blue to visualize collagenous ring (arrow) present between vertebrae at HH35. A) Dorsal section from HH35 chick. B) Middle section from HH35 chick. C)Ventral section from HH35 chick. ~50 µm apart. NC = Notochord, V = Vertebrae

V

V

V

V

V

V

NC NC

E14.5 P0

NP V NP NP V NP

* *

A B C

D E

A B C

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Figure 3-4. Sonic hedgehog gene expression in early chicken development. Whole mount In situ hybridization with Sonic Hedgehog. Expression can clearly be seen in the notochord and floor plate. (NC = notochord)

Figure 3-5. Sonic hedgehog Gene Expression at HH35.Sagittal section in situ hybridization of Chick and Mouse at HH35 and E14.5 days of development respectively. NC = Notochord, NP = Nucleus Pulposus.

Figure 3-6. Sonic Hedgehog Gene Expression at HH44. Section In situ hybridization. Chick transverse section at HH44 shows notochord (NC) stained positive. P0 Mouse Betagal stained section shows notochord derived nuclei pulposi (NP).

Dorsal

HH19 HH27

Dorsal

Chick HH35 - Sagittal Mouse E14.5 - Sagittal

NP

HH44 Chick Transverse Mouse P0

NP

NP

V NC

NC NC

Dorsal

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Figure 3-7: Scleraxis Gene Expression in HH19 and HH27 Chickens, whole mount in situ hybridization, HH19 Scx expression surrounding notochord. HH27 Scx expression is observed between the somites. NC = notochord

Figure 3-8. Scleraxis Gene Expression in HH35 and HH44 Chickens. HH35 Sagittal and HH44 Transverse section in situ Hybridizations. In HH35 scleraxis staining was visible on vertebral borders and in near birth stage HH44, staining was difficult to interpret.

HH35 HH44-Transverse

V V NC

HH19 HH27

NC NC

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CHAPTER 4 DISCUSSION

Intervertebral Development Analysis Via Collagen Staining

Our experiments investigating intervertebral development in the chicken embryo

determined that differences exist between mammalian intervertebral disc development

and avian intervertebral development. In the chickens we found that the notochord

remained present at least until birth. Additionally, in histological sections it was

observed that cartilaginous tissue forms between the developing vertebrae. In the early

stages examined, it is difficult to see the developing collagen. However, upon looking at

HH35 and after, a ring structure of collagen in the region of the forming disc is evident

which may provide some type of cushioning. The notochord was found to persist

throughout the length of the vertebral column at these stages. As the embryo develops

and gains more mobility these collagen rings form to possibly cushion the vertebrae

from increased stress due to development and in particular while hatching. In contrast,

in the adult sample no presence of intervertebral rings or notochord was observed. It is

unclear what happens from the period of birth to an adult chicken but at some

developmental stage, the notochord deteriorates leaving bony vertebrae.

One explanation for the rings that are present between vertebrae is for stress

reduction as the chick develops into an adult. As seen in Figure 3B, there is a dark red

collagen staining between the bony protrusions. While examining the sample it can be

seen that the edges have more GAG (alcian blue) staining, however as the section

progresses in a ventral to dorsal fashion, there is a clear transition from GAG to a

collagen and then back to the GAG, suggesting that disc structure has a collagen

center, but on a much smaller scale than a mammalian disc center.

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This miniature disc could develop as a stress reducing mechanism, only

necessary as the chick ages and deteriorate when the chick matures. In contrast as the

chick matures into an adult, and the notochord deteriorates, the cells surrounding the

notochord may fill the void created by this structure. This causes the ring structures to

condense and flatten into the collagen rich tissue found between adult vertebrae. In the

future I would like to examine post birth samples and determine the composition of this

intervertebral tissue and how it develops post embryonically.

Sonic Hedgehog Effect Pre and Postnatal

As previously shown Sonic Hedgehog was found to be expressed for the first two

stages, HH19 and HH27 in the somites (Johnson, 1994). Additionally Shh expression

continues until birth throughout the notochord, similar to mouse models where

expression continues in the nucleus pulposus (DiPaola, 2005). As the chick grows,

persistent sonic hedgehog signal from the notochord might be a method for the renewal

of notochord cells that die from daily stress involving the vertebral column. Additionally it

seems that chicks have a slower developmental clock, and the persistence of the

notochord into late embryonic stages may correlate with this slower development. It will

be an interesting future experiment to see if sonic hedgehog expression continues into

adulthood and coincides with notochord disappearance.

Scleraxis Effects and Continuation through Birth

Scleraxis expression was previously shown in the literature to be expressed in the

somites in early stage chick embryos (Shukunami, 2006). In my experiments, those

results were confirmed and, the early stages of HH19 and HH27 showed clear evidence

of scleraxis expression. In the earliest stage the expression in the vertebral area was

limited to the cells surrounding the notochord. As the chicks developed scleraxis

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expression spread to the areas bordering each vertebra. Since scleraxis is a marker of

the annulus in the mouse model, and it remains surrounding the notochord the evidence

suggests that there is some structure similar to the annulus that runs the outside entire

length of the notochord and possibly behaves in a functionally similar manner. By

retaining a similar structure to an annulus fibrosis, chick vertebral columns may utilize it

to lighten the stress present on the rod-like notochord. As the chick develops, scleraxis

signaling decreases and it may be due to the developing vertebra reducing stress levels

enough to the point where an annulus fibrosis structure is no longer necessary. In

contrast chicks may also retain the annulus fibrosis but with the vertebrae and

collagenous rings helping to reduce stress levels, the annulus tissue plays a minimal

role.

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APPENDIX LIST OF REAGENTS

This list includes the reagents as they were used in experiments and the

companies from which they were bought.

Alcian Blue(Acros Organics) o 1.0g alcian blue o 97 ml distilled water o 3 ml glacial acetic acid

Ampicillen (Fisher)

Acetic Acid (Fisher)

Blue Ribbon Embedding Medium (Surgipath)

5 bromo-4 chloro-3 indolyl phosphate (BCIP) (ROCHE)

Dako pen (Super HT)

DEPC (Applichem)

Ethanol (Fisher)

Formamide (Fisher)

Gelatin (Fisher)

Gluteraldehyde (Sigma)

Goat Serum (Sigma)

Hydrochloric Acid (Fisher)

KTBT o Tris ph 7.5 50mM o NaCl o KCl o Tween

LB (Fisher)

Magnesium Chloride (MgCl2) (Fisher)

Methanol

Miniprep Kit (Qiagen)

Nitroblue Tetrazolium Chloride (NBT) (ROCHE)

NaCl (Fisher)

NTMT o Tris ph 9.5 50mM o MgCl2 50mM (Fisher) o NaCl 100 mM (Fisher) o Triton 1% (Sigma)

Optimal Cutting Temperature Compound (OCT) (Fisher)

Paraffin (Fisher)

Paraformaldehyde (Fisher)

Phosphate Buffered Saline (Fisher)

Picrosirius Red (Polyscientific)

Permount (Fisher)

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Proteinase K (Fisher)

Tween 20 (Fisher)

Xylenes (Fisher)

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BIOGRAPHICAL SKETCH

Yasmin Mohiuddin received a Bachelor of Science, majoring in microbiology and

cell science from the University of Florida in Gainesville, Florida, in 2009. Here, she was

the recipient of the HHMI Science of Life Award and accepted into the University

Scholars’ program. She received her Master of Science majoring in medical sciences in

2011.