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Announcements Discussion sections start next week. You will take a short pre- concept test-bring a pencil (it will not influence your grade in the course). First Faculty Fellows Dining with Students lunch next Tuesday, Sept. 10, Noon, Jester City Limits.

BIO311Dlecture4

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Page 1: BIO311Dlecture4

Announcements

• Discussion sections start next week. You will take a short pre-concept test-bring a pencil (it will not influence your grade in the course).

• First Faculty Fellows Dining with Students lunch next Tuesday, Sept. 10, Noon, Jester City Limits.

Page 2: BIO311Dlecture4

Many human traits follow Mendelian patterns of

inheritance

• Humans are not good subjects for genetic research:

– Generation time is too long– Parents produce relatively few offspring– Breeding experiments are unacceptable

• However, basic Mendelian genetics endures as the foundation of human genetics.

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Pedigree Analysis

• A pedigree is a family tree that describes the interrelationships of parents and children across generations.

• Inheritance patterns of particular traits can be traced and described using pedigrees.

• Pedigrees can also be used to make predictions about future offspring.

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Key

Male Female Affectedmale

Affected female

Mating Offspring

1stgeneration

2ndgeneration

3rdgeneration

1stgeneration

2ndgeneration

3rdgeneration

Is a widow’s peak a dominant orrecessive trait?

(a) Is an attached earlobe a dominantor recessive trait?

b)

Widow’speak

No widow’speak

Attachedearlobe

Freeearlobe

FForFfWW

orWw

Ww ww ww Ww

Ww Ww Wwww ww ww

ww

Ff Ff Ff

Ff Ff

ff

ffffffFF or Ff

ff

Page 5: BIO311Dlecture4

Recessively Inherited Disorders

• Many genetic disorders are inherited in a recessive manner.

• These range from relatively mild to life-threatening.

Page 6: BIO311Dlecture4

The Behavior of Recessive Alleles

• Recessively inherited disorders show up only in individuals homozygous for the allele.

• Carriers are heterozygous individuals who carry the recessive allele but are phenotypically normal; most individuals with recessive disorders are born to carrier parents.

• Albinism is a recessive condition characterized by a lack of pigmentation in skin and hair.

Page 7: BIO311Dlecture4

Parents

NormalAa

Sperm

Eggs

NormalAa

AANormal

AaNormal(carrier)

AaNormal(carrier)

aaAlbino

A

A

a

a

Page 8: BIO311Dlecture4

• If a recessive allele that causes a disease is rare, then the chance of two carriers meeting and mating is low.

• However, matings between close relatives increase the chance of mating between two carriers of the same rare allele.

• Most societies and cultures have laws or taboos against marriages between close relatives.

Page 9: BIO311Dlecture4

Cystic Fibrosis

• Cystic fibrosis is the most common lethal genetic disease in the United States, striking one out of every 2,500 people of European descent.

• The cystic fibrosis allele results in defective or absent chloride transport channels in plasma membranes leading to a buildup of chloride ions outside the cell.

• Symptoms include mucus buildup in some internal organs and abnormal absorption of nutrients in the small intestine.

Page 10: BIO311Dlecture4

Sickle-Cell Disease: A Genetic Disorder with Evolutionary

Implications

• Sickle-cell disease affects one out of 400 African-Americans.

• The disease is caused by the substitution of a single amino acid in the hemoglobin protein in red blood cells.

• In homozygous individuals, all hemoglobin is abnormal (sickle-cell).

• Symptoms include physical weakness, pain, organ damage, and even paralysis.

Page 11: BIO311Dlecture4

Fig. 14-UN1

• Heterozygotes (said to have sickle-cell trait) are usually healthy but may suffer some symptoms.

• About one out of ten African Americans has sickle cell trait, an unusually high frequency of an allele with detrimental effects in homozygotes.

• Heterozygotes are less susceptible to the malaria parasite, so there is an obvious advantage to being heterozygous in some environments. This is the reason that the allele remains in the population.

Page 12: BIO311Dlecture4

Dominantly Inherited Disorders

• Some human disorders are caused by dominant alleles.

• Dominant alleles that cause a lethal disease are rare and arise by mutation.

• Achondroplasia is a form of dwarfism caused by a rare dominant allele.

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Parents

DwarfDd

Sperm

EggsDd

Dwarfdd

Normal

DdDwarf

ddNormal

D

d

d

d

Normaldd

Page 14: BIO311Dlecture4

• The timing of onset of a disease significantly affects its inheritance.

• Huntington’s disease is a degenerative disease of the nervous system.

• The disease has no obvious phenotypic effects until the individual is about 35 to 40 years of age.

• Once the deterioration of the nervous system begins the condition is irreversible and fatal.

Huntington’s Disease: A Late-Onset Lethal Disease

Page 15: BIO311Dlecture4

Multifactorial Disorders

• Many diseases, such as heart disease, diabetes, alcoholism, mental illnesses, and cancer have both genetic and environmental components.

• Little is understood about the genetic contribution to most multifactorial diseases.

Page 16: BIO311Dlecture4
Page 17: BIO311Dlecture4

Genetic Testing and Counseling

• Genetic counselors can provide information to prospective parents concerned about a family history for a specific disease.

• Using family histories, genetic counselors help couples determine the odds that their children will have genetic disorders.

• Probabilities are predicted on the most accurate information at the time; predicted probabilities may change as new information is available.

• For a growing number of diseases, tests are available that identify carriers and help define the odds more accurately.

Page 18: BIO311Dlecture4

Locating Genes Along Chromosomes

• Mendel’s “hereditary factors” were genes.

• Today we can show that genes are located on chromosomes.

• The location of a particular

gene can be seen by

tagging isolated

chromosomes with a

fluorescent dye that

highlights the gene.

Page 19: BIO311Dlecture4

Mendelian inheritance has its physical basis in the behavior of

chromosomes

• Mitosis and meiosis were first described in the late 1800s.

• The chromosome theory of inheritance states:– Mendelian genes have specific loci

(positions) on chromosomes.– Chromosomes undergo segregation and

independent assortment.• The behavior of chromosomes during meiosis

can account for Mendel’s laws of segregation and independent assortment.

Page 20: BIO311Dlecture4

P Generation

F1 Generation

Yellow-roundseeds (YYRR)

Green-wrinkledseeds (yyrr)

Meiosis

Fertilization

Gametes

Y

YR R

YR

y

yr

y r

All F1 plants produceyellow-round seeds (YyRr).

Meiosis

Metaphase I

Anaphase I

Metaphase II

R R

R R

R R

R R

R R R R

r r

r r

r r

r r

r r r r

Y Y

Y Y

Y Y

Y Y

Y Y Y Y

y y

y y

y y

y y

yy y y

Gametes

LAW OF SEGREGATIONThe two alleles for eachgene separate duringgamete formation.

LAW OF INDEPENDENTASSORTMENT Alleles of geneson nonhomologous chromosomesassort independently duringgamete formation.

1

2 2

1

1/41/4

1/41/4YR yr Yr yR

F2 Generation

3 3Fertilization recombinesthe R and r alleles at random.

Fertilization results in the 9:3:3:1 phenotypic ratioin the F2 generation.

An F1 F1 cross-fertilization

9 : 3 : 3 : 1

r

Page 21: BIO311Dlecture4

Morgan’s Experimental Evidence: Scientific Inquiry

• The first solid evidence associating a specific gene with a specific chromosome came from Thomas Hunt Morgan (1866-1945), an American embryologist.

• Morgan, in a series of experiments starting in about 1910 with fruit flies (Drosophila melanogaster), provided convincing evidence that chromosomes are the location of Mendel’s heritable factors.

Page 22: BIO311Dlecture4

Morgan’s Choice of Experimental Organism

• Several characteristics make fruit flies a convenient organism for genetic studies:

– They produce many offspring.

– A generation can be bred every two weeks.

– They have only four pairs of chromosomes.

Page 23: BIO311Dlecture4

• Morgan noted wild type, or normal, phenotypes that were common in the fly populations.

• Traits alternative to the wild type are called mutant phenotypes.

Page 24: BIO311Dlecture4

Correlating Behavior of a Gene’s Alleles with Behavior of a

Chromosome Pair• In one experiment, Morgan mated male flies with

white eyes (mutant) with female flies with red eyes (wild type):

– The F1 generation all had red eyes.

– The F2 generation showed the 3:1 red:white eye ratio, but only males had white eyes.

• Morgan determined that the white-eyed mutant allele must be located on the X chromosome.

• Morgan’s finding supported the chromosome theory of inheritance.

Page 25: BIO311Dlecture4

Figure 15.4

All offspringhad red eyes.

PGeneration

F1

Generation

F2

Generation

F2

Generation

F1

Generation

PGeneration

Eggs

Eggs

Sperm

Sperm

XX

XY

w

w

ww w

w

ww w

w

w

w

w

w

ww w

RESULTS

EXPERIMENT

CONCLUSION

Page 26: BIO311Dlecture4

Sex-linked genes exhibit unique patterns of inheritance

• In humans and some other animals, there is a chromosomal basis of sex determination.

X

Y

Page 27: BIO311Dlecture4

The Chromosomal Basis of Sex

• In humans and other mammals, there are two varieties of sex chromosomes: a larger X chromosome and a smaller Y chromosome.

• Only the ends of the Y chromosome have regions that are homologous with corresponding regions of the X chromosome.

• The SRY gene on the Y chromosome codes for a protein that directs the development of male anatomical features.

Page 28: BIO311Dlecture4

• Females are XX, and males are XY.

• Each ovum contains an X chromosome, while a sperm may contain either an X or a Y chromosome.

• Other animals have different methods of sex determination.

Page 29: BIO311Dlecture4

Figure 15.6

Parents

orSperm

or

Egg

Zygotes (offspring)

44 XY

44 XX

22 X

22 Y

22 X

44 XX

44 XY

22 XX

22 X

76 ZW

76 ZZ

32 (Diploid)

16 (Haploid)

(a) The X-Y system

(b) The X-0 system

(c) The Z-W system

(d) The haplo-diploid system

Page 30: BIO311Dlecture4

• A gene that is located on either sex chromosome is called a sex-linked gene.

• Genes on the Y chromosome are called Y-linked genes; there are few of these.

• Genes on the X chromosome are called X-linked genes.

• X chromosomes have genes for many characters unrelated to sex, whereas the Y chromosome mainly encodes genes related to sex determination.

Inheritance of X-Linked Genes

Page 31: BIO311Dlecture4

• X-linked genes follow specific patterns of inheritance.

• For a recessive X-linked trait to be expressed:

– A female needs two copies of the allele (homozygous).

– A male needs only one copy of the allele (hemizygous).

• Therefore, X-linked recessive disorders are much more common in males than in females.

Page 32: BIO311Dlecture4

Eggs Eggs Eggs

Sperm Sperm Sperm

(a) (b) (c)

XNXN XnY XNXn XNY XNXn XnY

Xn Y XN Y YXn

Xn Xn

XN

XN

XN XNXNXn XNY

XNY

XNY XNY

XnY XnYXNXn XNXn

XNXnXNXN

XnXn

Page 33: BIO311Dlecture4

• Some disorders caused by recessive alleles on the X chromosome in humans:

– Color blindness (mostly X-linked)

– Duchenne muscular dystrophy

– Hemophilia

Page 34: BIO311Dlecture4

X Inactivation in Female Mammals

• In mammalian females, one of the two X chromosomes in each cell is randomly inactivated during embryonic development.

• The inactive X condenses into a Barr body.

• If a female is heterozygous for a particular gene located on the X chromosome, she will be a mosaic for that character.

Page 35: BIO311Dlecture4

Figure 15.8

Early embryo:

X chromosomesAllele fororange fur

Allele forblack fur

Two cellpopulationsin adult cat:

Cell division andX chromosomeinactivation

Active XInactive X

Active X

Black fur Orange fur

Page 36: BIO311Dlecture4

• Each chromosome has hundreds or thousands of genes (except the Y chromosome).

• Genes located on the same chromosome that tend to be inherited together are called linked genes.

• This is because they are located near each other on the same chromosome.

Linked Genes

Page 37: BIO311Dlecture4

How Linkage Affects Inheritance

• Morgan did other experiments with fruit flies to see how linkage affects inheritance of two characters.

• Morgan crossed flies that differed in traits of body color and wing size.

Page 38: BIO311Dlecture4

Figure 15.9-1P Generation (homozygous)

Wild type(gray body, normal wings)

b b vg vg b b vg vg

Double mutant(black body,vestigial wings)

EXPERIMENT

Page 39: BIO311Dlecture4

Figure 15.9-2P Generation (homozygous)

Wild type(gray body, normal wings)

F1 dihybrid(wild type)

TESTCROSS

b b vg vg

b b vg vg

b b vg vg

b b vg vg

Double mutant(black body,vestigial wings)

Double mutant

EXPERIMENT

Page 40: BIO311Dlecture4

Figure 15.9-4P Generation (homozygous)

Wild type(gray body, normal wings)

F1 dihybrid(wild type)

Testcrossoffspring

TESTCROSS

b b vg vg

b b vg vg

b b vg vg

b b vg vg

Double mutant(black body,vestigial wings)

Double mutant

Eggs

Sperm

EXPERIMENT

RESULTS

PREDICTED RATIOS

Wild type(gray-normal)

Black-vestigial

Gray-vestigial

Black-normal

b vg b vg b vg b vg

b b vg vg b b vg vg b b vg vg b b vg vg

965 944 206 185

1

1

1

1

1

0

1

0

If genes are located on different chromosomes:

If genes are located on the same chromosome andparental alleles are always inherited together:

:

:

:

:

:

:

:

:

:

b vg

Page 41: BIO311Dlecture4

• Morgan found that body color and wing size are usually inherited together in specific combinations (parental phenotypes).

• He noted that these genes do not assort independently, and reasoned that they were on the same chromosome.

• However, nonparental phenotypes were also produced.

• Understanding this result involves exploring genetic recombination, the production of offspring with combinations of traits differing from either parent. And thus also relate to the chromosomal basis of recombination.

Page 42: BIO311Dlecture4

Recombination of Linked Genes: Crossing Over

• Morgan discovered that genes can be linked, but the linkage was incomplete, because some recombinant phenotypes were observed.

• He proposed that some process must occasionally break the physical connection between genes on the same chromosome.

• That mechanism was the crossing over of homologous chromosomes.

Page 43: BIO311Dlecture4

Testcrossparents

Replicationof chromosomes

Gray body, normal wings(F1 dihybrid)

Black body, vestigial wings(double mutant)

Replicationof chromosomes

Meiosis I

Meiosis II

Meiosis I and II

Recombinantchromosomes

Eggs

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

b vg

bvg b vgb vg b vg

Testcrossoffspring

965Wild type

(gray-normal)

944Black-

vestigial

206Gray-

vestigial

185Black-normal

Sperm

Parental-type offspringRecombinant offspring

Recombinationfrequency

391 recombinants2,300 total offspring

100 17%

b vg b vgb vgb vg

b vg b vg b vg b vg

b vg

Page 44: BIO311Dlecture4

Mapping the Distance Between Genes Using Recombination Data

• Alfred Sturtevant, one of Morgan’s students, constructed a genetic map, an ordered list of the genetic loci along a particular chromosome.

• Sturtevant predicted that the farther apart two genes are, the higher the probability that a crossover will occur between them and therefore the higher the recombination frequency.

Page 45: BIO311Dlecture4

• A linkage map is a genetic map of a chromosome based on recombination frequencies.

• Distances between genes can be expressed as map units; one map unit, or centimorgan, represents a 1% recombination frequency.

• Map units indicate relative distance and order, not precise locations of genes.

Linkage maps

Page 46: BIO311Dlecture4

Chromosome

Recombinationfrequencies

9% 9.5%

17%

b cn vg

RESULTS

Page 47: BIO311Dlecture4

• Genes that are far apart on the same chromosome can have a recombination frequency near 50%.

• Such genes are physically linked, but genetically unlinked, and behave as if found on different chromosomes.

Page 48: BIO311Dlecture4

• Sturtevant used recombination frequencies to make linkage maps of fruit fly genes.

• Using methods like chromosomal banding, geneticists can develop cytogenetic maps of chromosomes.

• Cytogenetic maps indicate the positions of genes with respect to chromosomal features.

Page 49: BIO311Dlecture4

Mutant phenotypes

Shortaristae

Blackbody

Cinnabareyes

Vestigialwings

Browneyes

Long aristae(appendageson head)

Gray body

Red eyes

Normalwings

Redeyes

Wild-type phenotypes

104.567.057.548.50

Page 50: BIO311Dlecture4

Changes in chromosome number or structure cause some genetic disorders

• Large-scale chromosomal alterations in humans and other mammals often lead to spontaneous abortions (miscarriages) or cause a variety of developmental disorders.

• Plants tolerate such genetic changes better than animals do.

Page 51: BIO311Dlecture4

Abnormal Chromosome Number

• In nondisjunction, pairs of homologous chromosomes do not separate normally during meiosis.

• As a result, one gamete receives two of the same type of chromosome, and another gamete receives no copy.

Page 52: BIO311Dlecture4

Meiosis I

Nondisjunction

Page 53: BIO311Dlecture4

Meiosis I

Meiosis II

Nondisjunction

Non-disjunction

Page 54: BIO311Dlecture4

Meiosis I

Meiosis II

Nondisjunction

Non-disjunction

Gametes

Number of chromosomes

Nondisjunction of homo-logous chromosomes inmeiosis I

(a) Nondisjunction of sisterchromatids in meiosis II

(b)

n 1 n 1n 1 n 1 n 1n 1 n n

Page 55: BIO311Dlecture4

• Aneuploidy results from the fertilization of gametes in which nondisjunction occurred.

• Offspring with this condition have an abnormal number of a particular chromosome.

• A monosomic zygote has only one copy of a particular chromosome.

• A trisomic zygote has three copies of a particular chromosome.

Page 56: BIO311Dlecture4

• Polyploidy is a condition in which an organism has more than two complete sets of chromosomes:

– Triploidy (3n) is three sets of chromosomes– Tetraploidy (4n) is four sets of

chromosomes

• Polyploidy is common in plants, but not animals.

• Polyploids are more normal in appearance than aneuploids.

Page 57: BIO311Dlecture4

Alterations of Chromosome Structure

• Breakage of a chromosome can lead to four types of changes in chromosome structure:

– Deletion removes a chromosomal segment– Duplication repeats a segment– Inversion reverses orientation of a segment

within a chromosome– Translocation moves a segment from one

chromosome to another

Page 58: BIO311Dlecture4

(a) Deletion

(b) Duplication

(c) Inversion

(d) Translocation

A deletion removes a chromosomal segment.

A duplication repeats a segment.

An inversion reverses a segment within a chromosome.

A translocation moves a segment from onechromosome to a nonhomologous chromosome.

A B C D E F G H

A B C E F G H

A B C D E F G H

A B C D E F G H B C

A B C D E F G H

A D C B E F G H

A B C D E F G H M N O P Q R

GM N O C H FED A B P Q R

Page 59: BIO311Dlecture4

Human Disorders Due to Chromosomal Alterations

• Alterations of chromosome number and structure are associated with some serious disorders.

• Some types of aneuploidy appear to upset the genetic balance less than others, resulting in individuals surviving to birth and beyond.

• These surviving individuals have a set of symptoms, or syndrome, characteristic of the type of aneuploidy.

Page 60: BIO311Dlecture4

Down Syndrome (Trisomy 21)

• Down syndrome is an aneuploid condition that results from three copies of chromosome 21.

• It affects about one out of every 700 children born in the United States.

• The frequency of Down syndrome increases with the age of the mother, a correlation that has not been explained.

Page 61: BIO311Dlecture4

Aneuploidy of Sex Chromosomes

• Nondisjunction of sex chromosomes produces a variety of aneuploid conditions.

• Klinefelter syndrome is the result of an extra chromosome in a male, producing XXY individuals.

• Monosomy X, called Turner syndrome, produces X0 females, who are sterile; it is the only known viable monosomy in humans.

Page 62: BIO311Dlecture4

There are additional exceptions to standard Mendelian

inheritance• One exception involves genes located in

the nucleus, and the other exception involves genes located outside the nucleus.

• In both cases, the sex of the parent contributing an allele is a factor in the pattern of inheritance.

Page 63: BIO311Dlecture4

Genomic Imprinting

• For a few mammalian traits, the phenotype depends on which parent passed along the alleles for those traits.

• Such variation in phenotype is called genomic imprinting.

• Genomic imprinting involves the silencing of certain genes that are “stamped” with an imprint during gamete production.

Page 64: BIO311Dlecture4

(a) Homozygote

Paternalchromosome

Maternalchromosome

Normal Igf2 alleleis expressed.

Normal Igf2 alleleis not expressed.

Normal-sized mouse(wild type)

Mutant Igf2 alleleinherited from mother

Mutant Igf2 alleleinherited from father

Normal-sized mouse (wild type)Dwarf mouse (mutant)

Normal Igf2 alleleis expressed.

Mutant Igf2 alleleis expressed.

Mutant Igf2 alleleis not expressed.

Normal Igf2 alleleis not expressed.

(b) Heterozygotes

Page 65: BIO311Dlecture4

• It appears that imprinting is the result of the methylation (addition of —CH3) of cysteine nucleotides.

• Genomic imprinting is thought to affect only a small fraction of mammalian genes.

• Most imprinted genes are critical for embryonic development.

Page 66: BIO311Dlecture4

Inheritance of Organelle Genes

• Extranuclear genes (or cytoplasmic genes) are found in organelles in the cytoplasm.

• Mitochondria, chloroplasts, and other plant plastids carry small circular DNA molecules.

• Extranuclear genes are inherited maternally because the zygote’s cytoplasm comes from the egg.

• The first evidence of

extranuclear genes came from

studies on the inheritance of

yellow or white patches on

leaves of an otherwise green plant.

Page 67: BIO311Dlecture4

• Some defects in mitochondrial genes prevent cells from making enough ATP and result in diseases that affect the muscular and nervous systems:

– For example, mitochondrial myopathy and Leber’s hereditary optic neuropathy

Page 68: BIO311Dlecture4

For next lecture

• If you want more practice problems for genetic crosses, see the problems at the end of the chapter (or use the text study guide or access the online “Mastering Biology” with new texts).

• Read Chap. 22 and answer:- What exactly is natural selection?- What is adaptation?- How are the sources of genetic variation and

principles of inheritance we already discussed essential to the process of evolution?