BIBLIOGRAPHY - Shodhgangashodhganga.inflibnet.ac.in/bitstream/10603/4336/14/14... · 2015-12-04 · Fernandes L, Silva SP, Donadi EA, Hojo ETS, Passos GAS, Soares CMA, Brigido MM,

Chapter VI Bibliography

119

BIBLIOGRAPHY

Abdel HA, Khedr MAA, Amal A, Abdel W, Quick WP, Abogadallah GM (2003) Proline induces the expression of salt stress responsive proteins and may improve the adaptation of Pancratium maritimum L. to salt stress. J Exp Bot 54: 2553-2562. Abraham E, Rigo G, Szekely G, Nagy R, Koncz C, Szabados L (2003) Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. Plant Mol Biol 51: 363-372. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651-1666. Addy SK, Goodman RN (1972) Polyphenol oxidase and peroxidase in apple leaves inoculated with a virulent or an avirulent strain for Ervinia amylovora. Ind Phytopath 25: 575-579. Agarwal S, Pandey V (2004) Antioxidant enzyme responses to NaCl stress in Cassia

angustifolia. Biol Plant 48: 555-560. Agastian P, Kingsley SJ, Vivekanandan M (2000) Effect of salinity on photosynthesis and biochemical characteristics in mulberry genotypes. Photosynthetica 38: 287-290. Ahamed AM, Heikal MM, Shaddad MA (1978) Photosynthetic activity, pigment content and growth of Helianthus annus and Linum usitatissiumm plants as influenced by salinization treatments. Bull Fac Sci Assiut Univ 7: 49-56. Ahmad R, Kim YH, Kim MD, Kwon SY, Cho K, Lee HS, Kwak SS (2010) Simultaneous expression of choline oxidase, superoxide dismutase and ascorbate peroxidase in potato plant chloroplasts provides synergistically enhanced protection against various abiotic stresses. Physiologia Planta 138: 520-533. Ahmada P, Johnb R, Sarwatc M, Umard S (2008) Responses of proline, lipid peroxidation and antioxidative enzymes in two varieties of Pisum sativum L. under salt stress. Int J Plant Production 2: 353-366. Akashi K, Miyake C, Yokota A (2001) Citrulline, a novel compatible solute in drought-tolerant wild watermelon leaves, is an efficient hydroxyl radical scavenger. FEBS Lett 508: 438-442. Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA (2009) Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol 69: 179-194.


120

Aljanabi SM, Forget L, Dookun A (1999) An improved and rapid protocol for the isolation of polysaccharide- and polyphenols- free sugarcane DNA. Plant Mol Biol Rep 17: 1-8. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. Alwala S, Kimbeng CA, Veremis JC, Gravois KA (2008) Linkage mapping and genome analysis in Saccharum interspecific cross using AFLP, SRAP and TRAP markers. Euphytica 164: 37-51. Amtmann A, Bohnert HJ, Bressan RA (2005) Meeting report: Abiotic stress and plant genome evolution. Search for new models. Plant Physiol 138: 127-130. Andrade RV, Paes HC, Nicola AM, de Carvalho MJA, Fachin AL, Cardoso RS, Silva SS, Fernandes L, Silva SP, Donadi EA, Hojo ETS, Passos GAS, Soares CMA, Brigido MM, Felipe MSS (2006) Cell organisation, sulphur metabolism and ion transport-related genes are differentially expressed in Paracoccidioides brasiliensis mycelium and yeast cells. BMC Genome 7:1-13. Arceneaux G (1967) Cultivated sugarcanes of the world and their botanical derivation. Proc Int Soc Sugar Cane Technol 12: 844-845. Archana K, Rama N, Mamrutha HM, Nataraja KN (2009) Down regulation of an abiotic stress related Nicotiana benthamiana WRKY transcription factor induces physiological abnormalities. Indian J Biotechnol 8: 53-60. Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M et al., (2008) Towards the understanding of the cocoa transcriptome: production and analysis of an exhaustive dataset of ESTs of Theobroma

cacao generated from various tissues and under various conditions. BMC Genome 9: 512. Arnon DI (1949) Copper enzymes in isolated chloroplasts po1ypheno1oxidase in Beta

vulgaris. Plant Physiol 24: 1-15. Asharaf M, Harris PJC (2004) Potential biochemical indicators of salinity tolerance in plants. Plant Sci 166: 3-16. Ashraf M (1989) The effect of NaCl on water relations, chlorophyll and protein and proline contents of two cultivarsof blackgram (Vigna mungo L.). Plant Soil 119:205-210. Ashraf M (1994) Breeding for salinity tolerance in plants. Crit Rev Plant Sci 13: 17-42.


121

Ashraf M (2002) Salt tolerance of cotton: some new advances. Crit Rev Plant Sci 21: 1-30. Ashraf M (1997) Changes in soluble carbohydrates and soluble proteins in three arid-zone grass species under salt stress. Trop Agric 74: 234-237. Ashraf MY, Bhatti AS (2000) Effect of salinity on growth and chlorophyll content of rice. Pak J Sci Ind Res 43: 130-131. Aslam M, Sinha VB, Singh RK, Anandhan S, Pande V, Ahmed Z (2010) Isolation of cold stress-responsive genes from Lepidium latifolium by suppressive subtraction hybridization. Acta Physiol Plant 32: 205-210. Azooz MM (2009) Salt stress mitigation by seed priming with salicylic acid in two faba bean genotypes differing in salt tolerance. Int J Agric Biol 11: 343-350. Badawi GH, Yamauchi Y, Shimada E, Sasaki R, Kawano N, Tanaka K, Tanaka K (2004) Enhanced tolerance to salt stress and water deficit by overexpressing superoxide dismutase in tobacco (Nicotiana tabacum) chloroplasts. Plant Sci 166: 919-928. Bahn SC, Bae MS, Park YB, Oh SI, Jeung JU, Bae JM, Chung YS, Shin JS (2001) Molecular cloning and characterization of a novel low temperature-induced gene, blti2, from barley (Hordeum vulgare L.) Biochim Biophys Acta 1522: 134-137. Bai Y, Michaels TE, Pauls KP (1998) Determination of genetic relationships among Phaseolus vulgaris populations in a conical cross from RAPD marker analyses. Mol Breeding 4:395-406. Baisakh N, Subudhi PK, Parami NP (2006) cDNA-AFLP analysis reveals differential gene expression in response to salt stress in a halophyte Spartina alterniflora Loisel. Plant Sci 170: 1141-1149. Balibrea ME, Parra M, Bolarin M, Alfocea FP (1999) PEG-osmotic treatment in tomato seedlings induces salt-adaptation in adult plants. Aust J Plant Physiol 26: 781-786. Bartels D, Sunkar R (2005) Drought and Salt Tolerance in Plants. Crit Rev Plant Sci 24: 23-58. Bates LS (1973) Rapid determination of free proline for water stress studies. Plant Soil 39: 205-207. Bautz EK, Reilly E (1966) Gene-specific messenger RNA: isolation by the deletion method. Science 151: 328-330. Beckmann J, Soller M (1986) Restriction fragment length polymorphisms in plant genetic improvement. Oxford Surveys of Plant Mol Biol Cell Biol 3: 197-250.


122

Beers RF, Sizer IW (1952) A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase. J Biol Chem 195: 133-140. Bennetzen JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42: 251-269. Bolu WH, Polle A (2004) Growth and stress reactions in roots and shoots of a salt-sensitive poplar species (Populus x canescens) Trop Ecol 45: 161-171. Borges JC, Cagliari TC, Ramos CHI (2007) Expression and variability of molecular chaperones in the sugarcane expressome. J Plant Physiol 164: 505-513. Bradford M (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein binding. Analytical Biochem 72: 248-254. Brady NC and Weil RR (2001) The nature and properties of soils. Thirteenth edition, Prentice Hall, Upper Saddle River, New Jersey. Brands A and Ho TD (2002) Function of a plant stress-induced gene, HVA22 synthetic enhancement screen with its Yeast homolog reveals its role in vesicular traffic. Plant Physiol 130: 1121-1131. Bray EA, Bailey-Serres J, Weretilnyk E (2000) Responses to abiotic stresses. In: Biochemistry and molecular biology of plants, Buchanan BB, Gruissem W, Jones RL (Eds.). Am Soc Plant Physiologists, Rockville, Maryland, USA, pp: 1158-1203. Brendel C, Gelman L, Auwerx J (2002) Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism. Mol Endocrinol 16: 1367-1377. Breusegem FV, Vranova E, Dat JF, Inze D (2001) The role of active oxygen species in plant signal transduction. Plant Sci 161: 405-414. Burr K, Harper R, Linacre A (2001) One-step isolation of plant DNA suitable for PCR amplification. Plant Mol Biol Rep 19: 367-371. Busk PK, Pages M (1998) Regulation of abscisic acid-induced transcription. Plant Mol Biol 37: 425-435.

Butterfield MK, D'Hont A, Berding N (2001) The sugarcane genome: a synthesis of current understanding, and lessons for breeding and biotechnology. Proc S Afr Sug Technol Ass 75: 1-5.

Butruille DV, Guries RP, Osborn TC (1999) Linkage analysis of molecular markers and quantitative trait loci in populations of inbred backcross lines of Brassica napus L. Genetics 153: 949-964.


123

Candan N, Tarhan L (2003) The correlation between antioxidant enzyme activities and lipid peroxidation levels in Mentha pulegium organs grown in Ca2+, Mg2+, Cu2+, Zn2+ and Mn2+ stress conditions. Plant Sci 163: 769-779. Cavalcanti FR, Lima JP, Ferreira-Silva SL, Viégas RA, Silveira JA (2007) Roots and leaves display contrasting oxidative response during salt stress and recovery in cowpea. J Plant Physiol 164: 591-600. Cervilla LM, Blasco BA, Rios JJ, Romero L, Ruiz JM (2007) Oxidative stress and antioxidants in tomato (Solanum lycopersicum) plants subjected to boron toxicity. Ann Bot 100: 747-756. Chantha SC, Tebbji F, Matton DP (2007) From the notch signaling pathway to ribosome biogenesis. Plant Signal Behav 2: 168-170. Chaparzadeh N, Amico ML, Nejad RK, Izzo R, Izzo FN (2004) Antioxidative responses of Calendula officinalis under salinity conditions. Plant Physiol Biochem 42: 695-701. Chen THH, Murata N (2002) Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr Opin Plant Biol 5: 250-257. Chen XY, Kim JY (2009) Callose synthesis in higher plants. Plant Signal Behav 4: 489-492. Chen YH, Tsai YJ, Huang JZ, Chen FC (2005) Transcription analysis of peloric mutants of Phalaenopsis orchids derived from tissue culture. Cell Res 15: 639-657. Cherian S, Reddy MP (2003) Evaluation on NaCl tolerance in callus cultures of Suaeda

nudiflora. Moq Biol Plant 46: 193-198. Childs KL, Hamilton JP, Zhu W, Ly E, Cheung F, Wu H, Rabinowicz PD, Town CD, Buell CR, Chan AP (2007) Database issue: The TIGR plant transcript assemblies database. Nucleic Acids Res 35: D846-D851. Choi HI, Hong JH, Ha JO, Kang JY, Kim SY (2000) ABFs, a family of ABA-responsive element binding factors. J Biol Chem 275: 1723-1730. Colmenero-Flores JM, Campos F, Garciarrubio A, Covarrubias AA (1997) Characterization of Phaseolus vulgaris DNA clones responsive to water deficit: identification of a novel late embryogenesis abundant-like protein. Plant Mol Biol 35: 393-405. Condit CM, Meagher RB (1987) Expression of a gene encoding a glycine-rich protein in petunia. Mol Cell Biol 7: 4273-4279.

Cosgrove DJ (2005) Growth of the plant cell wall. Nature Rev Mol Cell Biol 6: 850-861.


124

Cram WJ (1976) Negative feedback regulation of transport in cells. The maintenance of turgor, volume and nutrient supply. In: Luttge U, Pitman MG (Eds.): Encyclopedia of plant physiology, New Series, Vol. 2. Springer-Verlag, Berlin. Creelman RA, Mullet JE (1995) Jasmonic acid distribution and action in plants: Regulation during development and response to biotic and abiotic stress. Proc Natl Acad Sci 92: 4114-4119. Creste S, Sansoli DM, Tardiani ACS, Silva DN, Gonçalves FK, Favero TM, Medeiros CNF, Festucci CS, Carlini-Garcia LA, Landell MGA, et al. Comparison of AFLP, TRAP and SSRs in the estimation of genetic relationships in sugarcane. Sugar tech 12: 150-154. D’Hont A (2005) Unraveling the genome structure of polyploids using FISH and GISH; examples of sugarcane and banana. Cytog Genome Res 109: 27-33. D’Hont A, Glaszman JC (2001) Sugarcane genome analysis with molecular markers, a first decade of research. Proc Int Soc Sugar Cane Technol 24: 556-559. da Silva JA, Ulian E and Barsalobres CF (2001) Development of EST-derived RFLP markers for sugarcane breeding. Proc Int Soc Sugar Cane Technol 24:318-322. Datta KK, Jong de C (2002) Adverse effect of waterlogging and soil salinity on crop land productivity in northwest region of Haryana, India. Agril Water Mgt 57: 223-238. Daugrois JH, Grivet L, Roques D, Hoarau JY, Lombard H, Glaszmann JC, D’Hont A (1996) A putative major gene for rust resistance linked with a RFLP marker in sugarcane cultivar ‘R570’. Theor Appl Genet 92: 1059-1064. Degenhardt J, Al-Masri AN, Kürkcüoglu S, Szankowski I, Gau AE (2005) Characterization by suppression subtractive hybridization of transcripts that are differentially expressed in leaves of apple scab-resistant and susceptible cultivars of Malus domestica. Mol Genet Genomics 273: 326-335. Delaplace P, Frettinger P, Ghanem ME, Blondiaux A, Bauwens J, Cotton S, Clerck CD, Dewalque A, Guy J, Heuze F, Massoz A, Tassignon T, van Aubel G, du Jardin P, Fauconnier ML (2009) Lipoxygenase pathway and antioxidant system in salt stressed tomato seedlings (Lycopersicon esculentum Mill.). Biotechnol Agron Soc Environ 13: 529-536. Dellagi A, Heilbronn J, Avrova AO, Montesano M, Palva ET, Stewart HE, Toth IK, Cooke DEL, Lyon GD, Birch PRJ (2000) A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp atroseptica

and Phytophthora infestans and is coregulated with class I endochitinase expression. Mol Plant Microbe Interact 13: 1092-1101.


125

Deutch RA, Winicov I (1995) Post-transcriptional regulation of a saltinducible alfalfa gene encoding a putative chimeric protein-rich cell wall protein. Plant Mol Biol 27: 411-418. Dhanapackiam S, Ilyas MHM (2010) Effect of salinity on chlorophyll and carbohydrate contents of Sesbania grandiflora seedlings. Indian J Sci Technol 3: 64-66. Diatchenko L, Lau YFC, Campbell AP, Chenchik A, Moqadam F, Huang B, Lukyanov S, Lukyanov K, Nadya Gurskaya N, Eugene DS, and Siebert PD (1996) Suppression subtractive hybridization: A method for generating differentially regulated or tissue specific cDNA probes and libraries. Proc Natl Acad Sci USA 93: 6025-6030.

Didierjean L, Frendo P, Nasser W, Genot G, Marivet J, Burkard G (1996) Heavy-metal-responsive genes in maize: identification and comparison of their expression upon various forms of abiotic stress. Planta 199: 1-8.

Dilworth E, Frey JE (2000) A rapid method for high throughput DNA extraction from plant material for PCR amplification. Plant Mol Biol Rep 18: 61-64. Dufour P, Deu M, Grivet L, D’Hont A, Paulet F, Bouet A, Lanaud C, Glaszmann JC, Hamon P (1997) Construction of a composite sorghum genome map and comparison with sugarcane, a related complex polyploidy. Theor Appl Genet 94: 409-418. Duguid JR, Dinauer MC (1990) Library subtraction of in vitro cDNA libraries to identify differentially expressed genes in scrapie infection. Nucleic Acids Res 18: 2789-2792. Edreva A, Velikova V, Tsonev T, Dagnon S, Gürel A, Aktaş L, Gesheva E (2008) Stress-protective role of secondary metabolites: diversity of functions and mechanisms. Gen Appl Plant Physiol 34: 67-78. Enan MR (2007) Assessment of genotoxic activity of Para-nitrophenol in higher plant using arbitrarily primed- polymerase chain reaction (AP-PCR). American J Biotech Biochem 3:103-109. Esfandiari E, Shekari F, Shekari F, Esfandiari M (2007b) The effect of salt stress on antioxidant enzymes activity and lipid peroxidation on the wheat seedling. Not Bot Hort Agrobot Cluj 35: 48-56. Esfandiari EO, Shakiba MR, Mahboob SA (2007a) Water stress, antioxidant enzyme activity and lipid peroxidation in wheat seedling. J Food Agric Environ 5: 149-153. Errabii T, Gandonou CB, Essalmani H, Abrini J, Idaomar M, Senhaji NS (2007) Effects of NaCl and mannitol induced stress on sugarcane (Saccharum sp.) callus cultures. Acta Physiol Plant 29: 95-102.


126

Eulgem T, Rushton PJ, Robatzek S, Somssich IE (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci 5: 199-206. Evans NH, McAinsh MR, Hetherington AM (2001) Calcium oscillations in higher plants. Curr Opin Plant Biol 4: 415-420. Faris JD, Li WL, Liu DJ, Chen PD, Gill BS (1999) Candidate gene analysis of quantitative disease resistance in wheat. Theor Appl Genet 98: 219-225. Felice BD, Wilson RR, Argenziano C, Kafantaris I, Conicella C (2009) A transcriptionally active copia -like retroelement in Citrus limon. Cell Mol Biol Lett 14: 289-304. Filho JTC, Seraphin ES (2001) Changes in osmotic potential and soluble carbohydrates levels in Solanum lycocarpum St.-Hil. in response to water stress. Rev Bras Bot 24: 199-204. Floris M, Mahgoub H, Lanet E, Robaglia C, Menand B (2009) Post-transcriptional regulation of gene expression in plants during abiotic stress: a review. Int J Mol Sci 10: 3168-3185. Foolad MR, Chen FQ (1998) RAPD markers associated with salt tolerance in an interspecific cross of tomato (Lycopersicon esculentum x L. pennelli). Plant Cell Rpt 17: 306-312. Foyer HC (2005) Redox homeostasis and antioxidant signaling: A metabolic interface between stress perception and physiological responses. Plant Cell 17: 1866-1875. Foyer HC, Noctor G (2003) Redox sensing and signalling associated with reactive oxygen in chloroplasts, peroxisomes and mitochondria. Physiol Plant 9: 355-364. Fu X, Huang Y, Deng S, Zhou R, Yang G, Ni X, Li W, Shi S (2005) Construction of a SSH library of Aegiceras corniculatum under salt stress and expression analysis of four transcripts. Plant Sci 169: 147-154. Fujita M, Fujita Y, Noutoshi Y, Takahashi F, Narusaka Y, Shinozaki KY, Shinozaki K (2006) Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr Opin Plant Biol 9: 436-442. Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J (2006) DRTF: a database of rice transcription factors. Bioinformatics 22: 1286-7. Gao J, Chao D and Lin H (2007) Understanding abiotic stress tolerance mechanisms: recent studies on stress response in rice. J of Int Plant Biol 49: 742-750.


127

Gao S, Ouyang C, Wang S, Xu Y, Tang L, Chen F (2008) Effects of salt stress on growth, antioxidant enzyme and phenylalanine ammonia-lyase activities in Jatropha

curcas L. seedlings. Plant Soil Environ 54: 374-381. Gara LD, Pinto MC, Tommasi F (2003) The antioxidant systems vis-á-vis reactive oxygen species during plant-pathogen interaction. Plant Physiol Biochem 41: 863-870. Gazzarrini S, Mccourt P (2003) Cross-talk in plant hormone signalling: what Arabidopsis

mutants are telling us? Ann Bot 91: 605-612. Genschik P, Durr A, Fleck J (1994) Differential expression of several E2-type ubiquitin carrier protein genes at different developmental stages in Arabidopsis thaliana and Nicotiana sylvestris. Mol Gen Genet 244: 548-556. Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100. Gonzalez-Guzman M, Apostolova N, Belles JM, Barrero JM, Piqueras P, Ponce MR, Micol JL, Serrano R, Rodriguez PL (2002) The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde. Plant Cell 14:1833-1846. Gonzalez-Martinez SC, Ersoz E, Brown GR, Wheeler NC, Neale DB (2006) DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L. Genetics 172: 1915-1926. Grandbastien MA, Audeon C, Bonnivard E, Casacuberta JM, Chalhoub B, Costa APP, Le QH, Melayah D, Petit M, Poncet C, Tam SM, van Sluys MA, Mhiri C (2005) Stress activation and genomic impact of Tnt1 retrotransposons in solanaceae. Cytogenet Genome Res 110: 229-241. Grime JP (1979) Plant strategies and vegetation processes: book review. Wiley and Sons, Ltd., Chichester, New York, Brisbane, Toronto, pp 222. Grisel N, Zoller S, Gontarczyk MK, Lampart T, Munsterkotter M, Brunner I, Bovet L, Metraux JP, Sperisen C (2010) Transcriptome responses to aluminum stress in roots of aspen (Populus tremula). BMC Plant Biol 10: 185. Grover A, Kapoor A, Lakshmi OS, Agarwal S, Sahi C, Agarwal SK, Agarwal M, Dubey H (2001) Understanding molecular alphabets of the plant abiotic stress responses. Curr Sci 80: 206-216. Gupta V, Raghuvanshi S, Gupta A, Saini N, Gaur A, Khan MS, Gupta RS, Singh J, Duttamajumder SK, Srivastava S, Suman A, Khurana JP, Kapur R, Tyagi AK (2010)


128

The water-deficit stress- and red-rot-related genes in sugarcane. Funct Integr Genomics 10: 207-214. Ha YI, Lim JM, Ko SM, Liu JR, Choi DW (2007) A ginseng-specific abundant protein (GSAP) located on the cell wall is involved in abiotic stress tolerance. Gene 386: 115-122. Hajar AS, Heikal MM, Maghrabi YM, Abuzinadah RA (1993) Responses of Arachis

hypogaea (Peanut) to salinity stress. J King A Univ Sci 5: 5-13. Han GP, Wu QL (2004) Comparative properties of sugarcane rind and wood strands for structural composite manufacturing. For Prod J 54: 283-288. Hara E, Kato T, Nakada S, Sekiya S, Oda K (1991) Subtractive cDNA cloning using oligo(dT) 30-latex and PCR: isolation of cDNA clones specific to undifferentiated human embryonal carcinoma cells. Nucleic Acids Res 19: 7097-7104. Harmon AC, Gribskov M, Gubrium E, Harper JF (2001) The CDPK superfamily of protein kinase. New Phytol 151: 175-183. Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ (2000) Plant cellular and molecular responses to high salinity. Annu Rev Plant Mol Plant Physiol 51: 463-499. Heath RL, Parker L (1968) Photoperoxidation in isolated chloroplasts. Kinetics and stoichiometry of fatty acid peroxidation. Arch Biochem Biophys 125: 189-198. Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC (2003) The basic helix–loop–helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol 20: 735-747. Hoarau JY, Offmann B, D’Hont A, Risterucci AM, Roques D, Glaszmann JC, Grivet L (2001) Genetic dissection of a modern sugarcane cultivar (Saccharum spp) I genome mapping with AFLP markers. Theor Appl Genet 103: 84-97. Hoekstra FA, Golovina EA, Buitink J (2001) Mechanisms of plant desiccation tolerance. Trends in Plant Sci 6: 431-438. Hogarth DM (1987) Genetics of sugarcane. In: Heinz DJ (Ed.) Sugarcane improvement through breeding. Amsterdam, Elsevier, pp. 255-271. Holmberg N, Bulow L (1998) Improving stress tolerance in plants by gene transfer. Trends Plant Sci. 3: 61-66. Hong Z, Lakkineni K, Zhang Z, Verma DPS (2000) Removal of feedback inhibition of 1-pyrroline-5-carboxylate synthetase results in increased proline accumulation and protection of plants from osmotic stress. Plant Physiol 122: 1129-1136.


129

Honeycutt RJ, Sobral BWS, Kiem P, Irvine J (1992) A rapid DNA extraction method for sugarcane and its relatives. Plant Mol Biol Rep 10: 66-72. Horemans N, Foyer C, Asard H (2000) Transport and action of ascorbate at the plant plasma membrane. Trends Plant Sci 5: 263-267. Houde M, Belcaid M, Ouellet F, Danyluk J, Monroy AF, Dryanova A, Gulick P, Bergeron A, Laroche A, Links MG et al (2006) Wheat EST resources for functional genomics of abiotic stress. BMC Genom 7:149. Hu J, Ochoa OE, Truco MJ, Vick BA (2005) Application of the TRAP technique to lettuce (Lactuca sativa L.) genotyping. Euphytica 144: 225-235. Hu J, Vick BA (2003) TRAP (target region amplification polymorphism), a novel marker technique for plant genotyping. Plant Mol Biol Reporter 21: 289-294. Huh J, Kang B, Nahm S, Kim S, Ha K, Lee MH, Kim BD (2001) A candidate gene approach identified phytoene synthase as the locus for mature fruit color in red pepper (Capsicum spp.). Theor Appl Genet 102: 524-530. Hussain A, Khan ZI, Ashraf M, Rashid MH, Akhtar M (2004) Effect of salt stress on some growth attributes of sugarcane cultivars CP-77-400 and COJ-84. Int J Agri Biol 6: 188-191. Hwang I, Sze H, Harper JF (2000) A calcium-dependent protein kinase can inhibit a calmodulin-stimulated Ca2+ pump (ACA2) located in the endoplasmic reticulum of Arabidopsis. Proc Natl Acad Sci 97: 6224-6229. Ichimura K, Shinozaki K, Tina G, Sheen J, Henry Y et al. (2002) Mitogen activated protein kinase cascades in plants: A new nomenclature. Trends Plant Sci 7: 301-308. Ito T, Tyler JK, Kadonaga JT (1997) Chromatin assembly factors: a dual function in nucleosome formation and mobilization? Genes Cells 2: 593-600. Jacobs AK, Lipka V, Burton RA, Panstruga R, Strizhov N, Lefert PS, Fincher GB (2003) An Arabidopsis callose synthase, GSL5, is required for wound and papillary callose formation. Plant Cell 15: 2503-2513. Jagendorf AT, Hibino T, Takabe T (2002) Effects of hydrogen peroxide and nitric oxide on both salt and heat stress tolerance in rice. Plant Sci 163: 515-523. Jain SK, Agarwal PK, Singh VP (2007) Hydrology and water resources of India, Springer, 918-925.


130

Jaleel CA, Sankar B, Sridharan R, Panneerselvam R (2008) Soil salinity alters growth, chlorophyll content, and secondary metabolite accumulation in Catharanthus roseus. Turk J Biol 32: 79-83. Ji W, Wright MB, Cai L, Flament A, Lindpaintner K (2002) Efficacy of SSH PCR in isolating differentially expressed genes BMC Genom 3: 12. Jiang MY (1999) Generation of hydroxyl radicals and its relation to cellular oxidative damage in plants subjected to water stress. Acta Bot Sin 41: 229-234. Jiang SY, Chen Q F, Fang XJ (1999) Identification of differentially expressed genes in photoperiod sensitive genic male sterile rice by randomly amplified cDNAs using RAPD primers, Chin Sci Bull 44: 348. Jiang XC, Guo XH, Pan XL, Song SQ (2004) Construction and differential screening of a cDNA library specific to osmotic stress of Haloxylon ammodendron seedlings. J Biochem Mol Biol 37: 527-532. Jiang Y and Huang B (2002) Protein alterations in tall fescue in response to drought stress and abscisic acid. Crop Sci 42: 202-207. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sale F, Van de Wiel C, Bredemeijer G, Buiatti M, Maestri E, Malcevshi A, et al. (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3: 381-390. Joshi GV, Naik GR (1981) Response of sugarcane to different types of salt stress. Plant Soil 56: 255-263. Joshi V, Joung JG, Fei Z, Jander G (2010) Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress. Amino Acids 1438-2199. Kader JC (1996) Lipid-transfer proteins in plants. Annu Rev Plant Physiol Plant Mol Biol 47: 627-654. Kamei A, Umezawa T, Motoaki S, Zhu JK, Shinozaki K (2003) Analysis of gene expression profile in vegetative tissue of Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1, Abstract of the poster submitted in the Annual Plant and Animal Genome Meeeting, San Diego, USA, p.163 Kang J, Xie W, Sun Y, Yang Q, Wu M (2010) Identification of genes induced by salt stress from Medicago truncatula L. seedlings. Afr J Biotechnol 9: 7589-7594. Karabal E, Yucel M, Oktem HA (2003) Antioxidant responses of tolerant and sensitive barley cultivars to boron toxicity Plant Sci 164: 925-933.


131

Kashkush K, Feldman M, Levy AA (2003) Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 33: 102-106. Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol 17: 287-292. Kawar, PG, Pagariya MC, Dixit GB, Theertha Prasad D (2010) Identification and Isolation of SCGS phytoplasma-specific fragments by riboprofiling and development of specific diagnostic tool@. J Plant Biochem Biotechnol 19: 185-194. Kawasaki S, Borchert C, Deyholos M, Wang H, Brazille S, Kawai K, Galbraith D, Bohnert H (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13: 889-905. Kazan K (2003) Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged. Trends Plant Sci 8: 468-471. Keramat B, Kalantari KM, Arvin MJ (2009) Effects of methyl jasmonate in regulating cadmium induced oxidative stress in soybean plant (Glycine max L.) Afr J Microbiol Res

3: 240-244. Khan MH, Panda SK (2008) Alterations in root lipid peroxidation and antioxidative responses in two rice cultivars under NaCl-salinity stress. Acta Physio Plant 30: 81-89. Kim HJ, Baek KH, Lee SW, Kim J, Lee BW, Cho HS, Kim WT, Choi D, Hur CG (2008) Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome. BMC Plant Biol 8: 101. Kim MC, Lee SH, Kim JK, Chun HJ, Choi MS, Chung WS, Moon BC, Kang CH, Park CY, Yoo JH, Kang YH, Koo SC, Koo YD, Jung JC, Kim ST, Schulze-Lefert P, Lee SY, Cho MJ (2002) Mlo a modulator of plant defense and cell death, is a novel calmodulin-binding protein: isolation and characterization of a rice Mlo homologue. J Biol Chem 277: 19304-19314. Kobe B, Kajava AV (2001) The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 11: 725-732. Koca H, Bor M, Ozdemir F, Turkan I (2007) The effect of salt stress on lipid peroxidation, antioxidative enzymes and proline content of sesame cultivars. Environ Exp Bot 60: 344-351. Kochert G (1994) RFLP technology in: Phillips RL, Vasil IK (Eds.), DNA-based Markers in Plants. Kluwer Academic Publishers, Dordrecht pp. 8-38.


132

Kloosterman B, Oortwijn M, Willigen J, America T, Vos R, Visser RGF, Bachem CWB (2010) From QTL to candidate gene: genetical genomics of simple and complex traits in potato using a pooling strategy. BMC Genomics 11: 158 Kong L, Anderson JM, Ohm HW (2005) Induction of wheat defense and stress-related genes in response to Fusarium graminearum. Genome 48: 29-40.

Krawczyk WS (1977) Heavy meromyosin binding microfilaments in epidermal cells during wound healing. 258: 63-68.

Kumar SG, Reddy AM, Sudhakar C (2003) NaCl effects of proline metabolism in two high yielding genotypes of mulberry (Morus alba L.) with contrasting salt tolerance. Plant Sci 165: 1245-1250. Laity JH, Lee BM, Wright PE (2001) Zinc finger proteins: new insights into structural and functional diversity. Curr Opin Struct Biol 11: 39-46. Laxalt AM, Cassia RO, Sanllorenti PM, Madrid EA, Andreu AB, Daleo GR, Conde RD, Lamattina L (1996) Accumulation of cytosolic glyceraldehyde-3-phosphate dehydrogenase RNA under biological stress conditions and elicitor treatments in potato. Plant Mol Biol 30: 961-972. Lee S, Lee J, Paek KH, Kwon SY, Cho HS, Kim SJ, Park JM (2010) A novel WD40 protein, BnSWD1, is involved in salt stress in Brassica napus. Plant Biotechnol Rep 4: 165-172. Lee SH, Lee KW, Kim KY, Choi GJ, Yoon SH, Ji HC, Seo S, Lim YC, Ahsan N (2009) Identification of salt-stress induced differentially expressed genes in barley leaves using the annealing control-primer-based gene fishing technique. Afr J Biotechnol 8: 1326-1331. Leung J, Giraudat J (1998) Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 49: 199-222. Li X, Manley JL (2005) Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122: 365-378. Li A, Wang X, Leseberg CH, Jia J, Mao L (2008) Biotic and abiotic stress responses through calcium-dependent protein kinase (CDPK) signaling in wheat (Triticum

aestivum L.) Plant Signal Behav 3: 654-656. Li LH, Qiu XH, Li XH, Wang SP, Zhang Q, Lian XM (2010) Transcriptomic analysis of rice responses to low phosphorus stress. Chinese Sci Bull 55: 251-258. Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science., 257: 967-971.


133

Lima-Costa ME, Ferreira S, Duarte A, Ferreira AL (2010) Alleviation of salt stress using exogenous proline on a citrus cell line. Acta Hort 868: 109-112. Lin C, Mueller LA, McCarthy J, Crouzillat D, Pétiard V, Tanksley SD (2005) Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts. Theor Appl Genet 112:114-130. Lingle SE, Weigand CL (1997) Soil salinity and sugarcane juice quality. Field Crop Res 54: 259-268. Liotenberg S, North H, Marion-Poll A (1999) Molecular biology and regulation of abscisic acid biosynthesis in plants. Plant Physiol Biochem 37: 341-350. Lisitsyn N, Wigler M (1993) Cloning the differences between two complete genomes. Science 259: 946-951. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406. Liu B, Wendel JF (2000) Retrotransposon activation followed by rapid repression in introgressed rice plants. Genome 43: 874-880. Liu QX, Jindra M, Ueda H, Hiromi Y, Hirose S (2003) Drosophila MBF1 is a co-activator for Tracheae defective and contributes to the formation of tracheal and nervous systems. Development 130: 719-728. Liu Z, Anderson JA, Hu J, Friesen TL, Rasmussen JB, Faris JD (2005) A wheat intervarietal linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci. Theor Appl Genet 111: 782-794. Liu J, Zeng H, Li X, Xu L, Wang Y, Tang W, Han L (2010) Isolation and characterization of the betaine aldehyde dehydrogenase gene in Ophiopogon japonicas. The Open Biotech J 4: 18-25. Lobato AKS, Oliveira Neto CF, Santos Filho BG, Costa RCL,Cruz FJR, Neves HKB, Lopes MJS (2008) Physiological and biochemical behavior in soybean (Glycine max cv. Sambaiba) plants under water deficit. Australian J Crop Sci 225-232. Lopez CG, Banowetz GM, Peterson CJ, Kronstad WE (2003) Dehydrin expression and drought tolerance in seven wheat cultivars. Crop Sci 43: 577-582.


134

Loponen J, Mikola M, Katina K, Sontag-Strohm T, Salovaara H (2004) Degradation of HMW glutenins during wheat sourdough fermentations. Cereal Chem 81:87-93.

Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the Folin-phenol reagent. J Biol Chem 193: 265-275. Ludwig AA, Saitoh H, Felix G, Freymark G, Miersch O, Wasternack C, Boller T, Jones JD, Romeis T (2005) Ethylene mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants. Proc National Acad Sci 102: 10736-10741. Lutts S, Kinet JM, Bouharmont J (1996) Effects of salt stress on growth mineral nutrition and proline accumulation in relation to osmotic adjustment in rice (Oryza sativa L) cultivars differing in salinity tolerance. Plant Growth Regul 19: 207-218. Ma HM, Schulze S, Lee S, Yang M, Mirkov E, Irvine J, Moore P, Paterson A (2004) An EST survey of the sugarcane transcriptome. Theor Appl Genet 108: 851-863. Maas EV (1990) Crop salt tolerance. In: Tanji KK (Ed.). Agricultural salinity and assessment management . Amer Soc Civil Eng, Manuals and Reports on Engineering No. 71. New York: ASCE, pp: 262-304. Maas EV (1993) Testing Crops for Salinity Tolerance. In: Maranville JW, BaIigar BV, Duncan RR, Yohe JM (Eds.) Proc. Workshop on adaptation of plants to soil stresses. Intsormil, Univ of Ne, Lincoln, NE, pp. 234-247. Maccarrone M, Melino G, Finazzi-Agro A (2001) Lipoxygenases and their involvement in programmed cell death. Cell Death Differ 8: 776-784. Maggio A, Miyazaki S, Veronese P, Fujita T, Ibeas JI, Damsz B, Narasimhan ML, Hasegawa PM, Joly RJ, Bressan RA (2002) Does proline accumulation play an active role in stress induced growth reduction? Plant J 31: 699-712. Manners J, McIntyre L, Casu R, Cordeiro G, Jackson M, Aitken K, Jackson P, Bonnett G, Lee S, Henry R (2004) Can genomics revolutionize genetics and breeding in sugarcane? http://www.regional.org.au/au/asa/2004/poster/3/1/1793_mannersj.htm. Mansour MMF (2000) Nitrogen containing compounds and adaptation of plants to salinity stress. Biol Plant 43: 491-500. Martin ML, Busconi L (2001) A rice membrane-bound calcium-dependent protein kinase is activated in response to low temperature. Plant Physiol 125: 1442-1449. Martinez JP, Lutts S, Schanck A, Bajji M, Kinet JM (2007) Is osmotic adjustment required for water stress resistance in the Mediterranean shrub Atriplex halimus L. J Plant Physiol 161: 1041-1051.


135

Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, Shimada Y, Yoshida S, Shinozaki K, Yamaguchi-Shinozaki K (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J 38: 982-993. Matysik J, Alia, Bhalu B, Mohanty P (2002) Molecular mechanisms of quenching of reactive oxygen species by proline under stress in plants. Curr Sci 82: 525-532. McClelland M, Welsh J (1994) RNA fingerprinting by arbitrarily primed PCR. Genome Res 4: S66-S81. McNeil SD, Nuccio ML, Hanson AD (1999) Betaines and related osmoprotectants: targets for metabolic engineering of stress resistance. Plant Physiol 120: 945-950. Menossi M, Silva-Filho MC, Vincentz M, Van-Sluys MA, Souza GM (2008) Sugarcane functional genomics: gene discovery for agronomic trait development. Int J Plant Genomics 1-11.

Ming R, Liu SC, Lin YR, da Silva J, Wilson W, Braga D, van Deynze A, Wenslaff TF, Wu KK, Moore PH, Burnquist W, Sorrells ME, Irvine JE, Paterson AH (1998) Detailed alignment of Saccharum and Sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes. Genetics 150: 1663-1682. Ming R, Liu SC, Moore PH, Irvine JE, Paterson AH (2001) QTL analysis in a complex autopolyploid, genetic control of sugar content in sugarcane. Genome Res 11: 2075-2084. Mishra SK, Tripp J, Winkelhaus S, Tschiersch B, Theres K, Nover L, Scharf KD (2002) In the complex family of heat stress transcription factors, HsfA1 has a unique role as master regulator of thermotolerance in tomato. Genes Dev 16: 1555-1567. Mittler R (2002) Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci 7: 405-410. Molinari HBC, Marur CJ, Daros E, de Campos MKF, de Carvalho JFRP, Filho J CB, Pereira LFP, Vieira LGE (2007) Evaluation of the stress-inducible production of proline in transgenic sugarcane (Saccharum spp.): osmotic adjustment, chlorophyll fluorescence and oxidative stress. Physiol Plantar 130: 218-229. Moody DE (2001) Genomics techniques: an overview of methods for the study of gene expression. J Anim Sci 79: E128-E135. Moore PH (1995) Temporal and spatial regulation of sucrose accumulation in the sugarcane stem. Aust J Plant Physiol 22: 661-679. Moore SH, Wolcott MC (2001) Mapping and interpreting electrical conductivity in Production Fields. La Agric 44: 25-27.


136

Mugford ST, Osbourn A (2010) Evolution of serine carboxy peptidase-like acyltransferases in the monocots. Plant Signal Behav 5:193-195. Munnik T, Meijer HJG, ter Riet B, Frank W, Bartels D, Musgrave A (2000) Hyperosmotic stress stimulates phospholipase D activity and elevates the levels of phosphatidic acid and diacylglycerol pyrophosphate. Plant J 22: 147-154. Munns R (1993) Physiological processes limiting plant growth in saline soils: some dogmas and hypotheses. Plant Cell Environ 16: 15-24. Munns R (2002) Comparative physiology of salt and water stress, Plant Cell Environ 25: 239-250. Munns R (2005) Genes and salt tolerance: bringing them together. New Phytol 167: 645-663. Munns RE (1993) Physiological processes limiting plant growth in saline soils: some dogmas and hypotheses. Plant Cell Environ 16: 15-24. Murakeozy EP, Nagy Z, Duhaze C, Bouchereau A, Tuba Z (2003) Seasonal changes in the levels of compatible osmolytes in three halophytic species of inland saline vegetation in Hungary. J Plant Physiol 160: 395-401. Naidoo S, van Antwerpen R, Pammenter NW (2004) Quantifying the effect of soil salinity on the physiology of three South African sugarcane varieties. Proc S Afr Sug Technol 78: 313-330. Nakagami H, Pitzschke A, Hirt H (2005) Emerging MAP kinase pathways in plant stress signalling. Trends Plant Sci 10: 339-346. Nanjo T, Fujita M, Seki M, Kato T, Tabata S, Shinozaki K (2003): Toxicity of free proline revealed in an Arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase. Plant Cell Physiol 44: 541-548. Naar, A. M., Lemon, B. D., and Tjian, R. (2001). Transcriptional coactivator complexes. Annu Rev Biochem 70: 475-501. Neto ADA, Prico JT, Filho JE, de Abreu CEB, Filho EG (2006) Effect of salt stress on antioxidative enzymes and lipid peroxidation in leaves and roots of salt-tolerant and salt-sensitive maize genotypes. Environ Exp Bot 56: 235-241. Neto CFO, Lobato AKS, Gonçalves-Vidigal MC, Costa RCL, Filho BGS, Alves GAR, Maia WJS, Cruz FJR, Neves HKB, Lopes MJS (2009) Carbon compounds and chlorophyll contents in sorghum submitted to water deficit during three growth stages. J Food Agr Environ 7: 588-593.


137

Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EH, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJ, Walton EF, Yauk YK (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141: 147-166. Niknam V, Razavi N, Ebrahimzadeh H, Sharifizadeh B (2006) Effect of NaCl on biomass, protein and proline contents, and antioxidant enzymes in seedlings and calli of two Trigonella species. Biologia Plantarum 50: 591-596. Nimbalkar JD (1973) Physiological studies in sugarcane (Var. Co 740). Ph.D. Thesis, Shivaji University, Kolhapur, India. Nimbalkar SB, Harsulkar AM, Giri AP, Sainani MN, Franceschib V, Gupta VS (2006) Differentially expressed gene transcripts in roots of resistant and susceptible chickpea plant (Cicer arietinum L.) upon Fusarium oxysporum infection. Physiol Mol Plant Pathol 68: 176-188. Nogueira FTS, de Rosa VE Jr, Menossi M, Ulian EC, Arruda P (2003) RNA expression profiles and data mining of sugarcane response to low temperature. Plant Physiol 132: 1811-1824. Nover L, Bharti K, Doring P, Mishra SK, Ganguli A, Scharf KD (2001) Arabidopsis and the heat stress transcription factor world: How many heat stress transcription factors do we need? Cell Stress Chaperones 6: 177-189. Okubo K, Hori N, Matoba R, Niyama T, Fukushima A, Kojima Y, Matsubara K (1992) Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat Genet 2:173-179. Ouyang B, Yang T, Li H, Zhang L, Zhang Y, Zhang J, Fei Z, Ye Z (2007) Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis. J Exp Bot 58: 507-520. Owens DK, Alerding AB, Crosby KC, Bandara AB, Westwood JH, Winkel BS (2008) Functional analysis of a predicted flavonol synthase gene family in Arabidopsis. Plant Physiol 147: 1046-1061. Pagariya MC, Kulkarnai PA, Prabu GR, Devarumath RM Kawar PG (2010) Transcriptomic identification of candidate genes involved in sugarcane responses to salt stress based on cDNA - SSH analysis, Abstract of the poster presented in the Plant and Animal Genome Conference XVIII, San Diego, USA, p.04.

Paiva JMF, Trindade WG, Frollini E, Pardini L (2004) Carbon fiber reinforced carbon composites from renewable sources. Polymer Plast Tech Eng 43: 1187-1211.


138

Pandey A, Soccol CR, Nigam P, Soccol VT (2000) Biotechnological potential of agro-industrial residues-I: sugarcane bagasse, Biores Technol 74: 69-80. Papini-Terzi FS, Riso RF, Zorzetto NVR, Oliveira KC, de Maria FJ, Vicentini R, de Souza Rocha C, Quirino SAC, Ulian EC, Zingaretti di Mauro SM et al (2005) Transcription profiling of signal transduction-related genes in sugarcane tissues. DNA Res 12: 27-38. Parida AK, Das AB, Das P (2002) NaCl stress causes changes in photosynthetic pigments, proteins and other metabolic components in the leaves of a true mangrove, Bruguiera parvif lora, in hydroponic cultures. J Plant Biol 45: 28-36. Parida AK, Das AB, Mohanty P (2004) Defense potentials to NaCl in a mangrove, Bruguiera parviflora: differential changes of isoforms of some antioxidative enzymes. J Plant Physiol 161: 531-542.

Parvaiz A, Satyawati S (2008) Salt stress and phyto-biochemical responses of plants: a review. Plant Soil Environ 54: 89-99. Passardi F, Cosio C, Penel C, Dunand C (2005) Peroxidases have more functions than a Swiss army knife. Plant Cell Rep 24: 255-265. Patade VY, Bhargava S, Suprasanna P (2009) Halopriming imparts tolerance to salt and PEG induced drought stress in sugarcane. Agr Ecosyst Environ 13: 424-428. Pei ZM, Ward JM, Harper JF, Schroeder JI (1996) A novel chloride channel in Vicia faba guard cell vacuoles activated by the serine/threonine kinase, CDPK. EMBO J 15: 6564-6574. Penner G (1996) RAPD analysis of plant genomes, In: Jauhar PP (Ed.), Methods of genome analysis in plants, CRC Press, Boca Raton pp. 251-268. Phillips JR, Oliver MJ, Bartels D (2002) Molecular genetics of desiccation-tolerant systems. In: Black M, Pritchard HW (Eds). Desiccation and survival in plants: drying without dying. CABI Publishing, Wallingford, Oxon, pp. 319-341. Pierzynski GM, Sims JT, Vance GF (2005) Soils and environmental quality. Third Edition, Taylor and Francis, New York, pp. 569. Pflieger S, Lefebvre V, Causse M (2001) The candidate genes approach in plants genetics: a review. Mol Breed 7: 275-291. Pnueli L, Hallak-Herr E, Rozenberg M, Cohen M, Goloubinoff P, Kaplan A, Mittler R (2002) Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. Plant J 31: 319-330.


139

Potters G, Pasternak TP, Guisez Y, Palme KJ, Jansen MA (2007) Stress induced morphogenic responses: growing out of trouble? Trends Plant Sci 12: 98-105. Prabu G, Kawar PG, Pagariya MC, Prasad DT (2010) Identification of water deficit stress upregulated genes in sugarcane. Plant Mol Biol Rep doi10.1007/s11105-010-0230-0. Price AH, Cairns JE, Horton P, Jones HG, Griffiths H (2002) Linking drought-resistance mechanisms to drought avoidance in upland rice using a QTL approach: progress and new opportunities to integrate stomatal and mesophyll responses. J Exp Bot 53: 989-1004. Price S (1965) Interspecific hybridization in sugarcane breeding. Proc Int Soc Sugar Cane Technol 12: 1021-1026. Qin GX, Zhi ZH, Bao LD (2006) Alternative splicing of pre-mRNA in plants. J Agril Biotech 14: 809-815. Quiles MJ, Lopez NI (2004) Photoinhibition of photosystems I and II induced by exposure to high light intensity during oat plant grown effects on the chloroplastic NADH dehydrogenase complex. Plant Sci 166: 815-823. Raboin LM, Oliveira KM, Lecunff L, Telismart H, Roques D, Butterfield M, Hoarau JY, D’Hont A (2006) Genetic mapping in sugarcane, a high polyploid, using bi-parental progeny: identification of a gene controlling stalk colour and a new rust resistance gene. Theor Appl Genet 112: 1382-1391. Radic S, Radic-Stojkovic M, Pevalek-Kozlina B (2006) Influence of NaCl and mannitol on peroxidase activity and lipid peroxidation in Centaurea ragusina L. roots and shoots. J Plant Physiol 163: 1284-1292. Raffaele S, Mongrand S, Gamas P, Niebel A, Ott T (2007) Genome-wide annotation of remorins, a plant-specific protein family: evolutionary and functional perspectives. Plant Physiol145: 593-600. Rahnama H, Ebrahimzadeh H (2005): The effect of NaCl on antioxidant enzyme activities in potato seedlings. Biol Plant 49: 93-97. Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, and Bohlmann J (2008) A conifer genomics resource of 200,000 spruce (Picea spp) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea

sitchensis). BMC Genom 9: 484. Ramagopal S (1990) Protein polymorphism in sugarcane revealed by two-dimensional gel. Theor Applied Genet 79: 297-304.


140

Ramalingam J, Vera Cruz CM, Kukreja K, Chittoor JM, Wu JL, Lee SW, Baraoidan M, George ML, Cohen MB, Hulbert SH, Leach JE, Leung H (2003) Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice. Am Phytopathol Soc 16:14-24. Ramamoorthy R, Jiang SY, Kumar N, Venkatesh PN, Ramachandran S (2008) A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant Cell Physiol 49: 865-879. Rayment GE, Higginson FR (1992) Australian laboratory handbook of soil and water chemical methods, Melbourne, Inkata Press. Australian soil and land survey handbooks,3. Reddy AS (2001) Calcium: silver bullet in signaling. Plant Sci 160: 381-404.

Redkar PJ, Lemke PA, Singh NK (1996) Isolation of differentially expressed cDNA clones from salt-adapted Aspergillus nidulans. Curr Genet 29: 130-135.

Redkar RJ, Herzog RW, Singh NK (1998) Transcriptional activation of the Aspergillus

nidulans gpdA promoter by osmotic signals. Appl Environ Microbial 64: 2229-2231.

Reezi S, Babalar M, Kalantari S (2009) Silicon alleviates salt stress, decreases malondialdehyde content and affects petal color of salt stressed cut rose (Rosa xhybrida

L.) ‘Hot Lady’. Afr J Biotechnol 8: 1502-1508. Rensink W, Hart A, Liu J, Ouyang S, Zismann V, Buell CR (2005) Analyzing the potato abiotic stress transcriptome using expressed sequence tags. Genome 48:598-605. Rhoades JD (1996) Salinity: electrical conductivity and total dissolved solids. In: Sparks DL (Ed.) Methods of soil analysis: Chemical methods. Part 3. Soil Sci Soc of Am, Madison WI. Ribaut JM, de Vicente MC, Delannay X (2010) Molecular breeding in developing countries: challenges and perspectives. Curr Opin Plant Biol 13: 1-6. Riccardi F, Gazeau P, de Vienne D, Zivy M (1998) Protein changes in response to progressive water deficit in maize. Quantitative variation and polypeptide identification. Plant Physiol 117: 1253-1263. Riechmann J, Heard G, Martin L, Reuber CZ, Jiang J, Keddie L, Adam O, Pineda OJ, Ratcliffe RR, Samaha R, Creelman M, Pilgrim P, Broun JZ, Zhang D, Ghandehari BK, Sherman G, Yu L (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110.


141

Rizhsky L, Liang H, Shuman J, Shulaev V, Davletova S, Mittler R (2004) When defense pathways collide: the response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 134: 1683-1696. Roach BT (1972) Nobilisation of sugarcane. Proc Int Soc Sugar Cane Technol 14: 206-216. Robertson MJ, Muchow RC, Wood AW, Campbell JA (1996) Accumulation of reducing sugars by sugarcane: effects of crop age, nitrogen supply and cultivar. Field Crops Res 49: 39-50. Rock CD (2000) Pathways to abscisic acid-regulated gene expression. New Phytol 148: 357-396. Rodriguez M, Canales E, Borras-Hidalgo O (2005) Molecular aspects of abiotic stress in plants. Biotecnologia Aplicada 22: 1-10. Roosens NHCJ, Thu TT, Iskandar HM, Jacobs M (1998) Isolation of the Ornithine-δ- aminotransferase cDNA and effect of salt stress on its expression in Arabidopsis

thaliana. Plant Physiol 117: 263-271. Rossi M, Araujo PG, Paulet F, Garsmeur O, Dias VM, Chen H, Van Sluys MA, D’Hont A (2003) Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Mol Gen Genomics 269: 406-419. Rothschild MF, Soller M (1997) Candidate gene analysis to detect traits of economic importance in domestic livestock. Probe 8: 13-22. Rout NP, Shaw BP (2001) Salt tolerance in aquatic macrophytes: possible involvement of the antioxidative enzymes. Plant Sci 160: 415-423. Roychoudhury A, Basu S, Sarkar SN, Sengupta DN (2008) Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars. Plant Cell Rep 27: 1395-1410. Saibo NJ, Lourenco T, Oliveira MM (2009) Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses. Annals of Bot 103: 609-623. Saidi MN, Ladouce N, Hadhri R, Pettenati JG, Drira N, Bouzid RG (2010) Identification and characterization of differentially expressed ESTs in date palm leaves affected by brittle leaf disease. Plant Sci 179: 325-332. Saijo Y, Hata S, Kyozuka J, Shimamoto K, Izui K (2000) Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J 23: 319-327.


142

Sairam RK, Tyagi A (2004) Physiology and molecular biology of salinity stress tolerance in plants. Curr Sci 86: 407-421. Sakamoto H, Matsuda O, Iba K (2008) ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana. Plant J 56: 411-422. Sambrook J, Fritsch E, Maniatis T (1989) In Molecular cloning: A laboratory manual, 2nd eds, Cold Spring Harbor press, New York. Sanchez-Barrena MJ, Martinez-Ripoll M, Zhu JK, Albert A (2005) The structure of the Arabidopsis thaliana SOS3: molecular mechanism of sensing calcium for salt stress response. J Mol Biol 345: 1253-1264. Sangnark A, Noomhorm A (2004) Effect of dietary fiber from sugarcane bagasse and sucrose ester on dough and bread properties, Lebensmittel-Wissenschaft und-Technologie 37: 697-704. Santos RF, Carlesso R (1998) Water deficit and morphologic and physiologic behavior of the plants. R Bras Eng Agric Ambiental 2: 287-294. Scandalios JG (1993) Oxygen stress and superoxide dismutase. Plant Physiol 101:712-726. Schlogl PS, Nogueira FT, Drummond R, Felix JM, De Rosa VE Jr, Vicentini R, Leite A, Ulian EC, Menossi M (2008) Identification of new ABA- and MEJA-activated sugarcane bZIP genes by data mining in the SUCEST database. Plant Cell Rep 27: 335-345. Schummer M, Ng W, Nelson PS, Bumgarner RE, Hood dL (1997) Inexpensive hand held device for the construction of high-density nucleic acid arrays. BioTechniques 23:1087-1092. Snedden WA, Fromm H (2001) Calmodulin as a versatile calcium signal transducer in plants. New Phytolo151: 35-66. Seong ES, Choi D, Cho HS, Lim CK, Cho HJ, Wang MH (2007) Characterization of a stress-responsive ankyrin repeat-containing zinc finger protein of Capsicum annuum

(CaKR1). J Biochem Mol Biol 40: 952-958. Serraj R, Sinclair TR (2002) Osmolyte accumulation: can it really help increase in crop yield under drought conditions? Plant Cell Environ 25: 333-341. Selvam JN, Kumaravadivel N, Gopikrishnan A

, Kumar BK, Ravikesavan R, Boopathi

MN (2009) International journal of the faculty of agriculture and biology, communications in biometry and crop science 4, pp. 9-13.


143

Semagn K, Bjornstad A, Ndjiondjop MN (2006) An overview of molecular marker methods for plants. Afr J Biotechnol 5: 2540-2568. Shannon MC (1998) Adaptation of plants to salinity. Adv Agron 60: 75-119. Sharma PK, Hall DO (1991) Interaction of salt stress and photoinhibition on photosynthesis in barley and sorghum. J Plant Physiol 138: 614-619. Shen B, Jensen RG, Bohnert HJ (1997a) Mannitol protects against oxidation by hyderoxyl radicals. Plant Physiol.115: 527-532. Shen B, Jensen RG, Bohnert HJ (1997b) Increased resistance to oxidative stress in transgenic plants by targeting mannitol biosynthesis to chloroplasts. Plant Physiol. 113: 1177-1183. Shinozaki K, Yamaguchi-Shinozaki K, SekiM (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6: 410-417. Showalter AM, Butt AD, Kim S (1992) Molecular details of tomato extension and glycine-rich protein gene expression. Plant Mol Biol 19: 205-215. Smart CC, Fleming AJ (1996) Hormonal and environmental regulation of a plant PDR5-like ABC transporter. J Biol Chem 271: 19351-19357. Sofrova D (1999) Concepts in photobiology: photosynthesis and photomorphogenesis. Singhal GS, Renger G, Sopory SK, Irrgang K, Govindjee D (Eds.). Narosa Publishing House, New Delhi, Photosynthetica 38: 520. Sreenivasan TV, Ahooliwalia BS, Heinz DJ (1987) Cytogenetic. In: Heinz DJ (Ed.) Sugarcane improvement through breeding. Amsterdam, Elsevier, pp. 211-253. Stracke R, Werber M, Weisshaar B (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol 4: 447-456. Stockinger EJ, Mao Y, Regier MK, Triezenberg SJ, Thomashow MF (2001) Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression. Nucl Acids Res 29:1524-1533. Sun GL, William M, Liu J, Kasha KJ, Pauls KP (2001) Microsatellite and RAPD polymorphism in Ontario corn hybrids are related to the commercial sources and maturing ratings. Mol Breeding 7: 13-24. Suprasanna P, Ganapathi TR, Ramaswamy NK, Surendranathan KK, Rao PS (1998) Aroma synthesis in cell and callus cultures of rice. Rice Genet News 15: B123-125.


144

Szabolcs I (1994) Soils and salinisation: In handbook of plant and crop stress. Pessarakali M, Dekker M (Eds.), New York, pp. 3-11. Tahtiharju S, Sangwan V, Monroy AF, Dhindsa RS, Borg M (1997) The induction of kin

genes in cold-acclimating Arabidopsis thaliana, evidence of a role for calcium. Planta 203: 442-447. Tanaka Y, Sano T, Tamaoki M, Nakajima N, Kondo N, Hasezawa S (2005) Ethylene inhibits abscisic acid-induced stomatal closure in Arabidopsis. Plant Physiol 138: 2337-2343. Tanksley SD, Young ND, Paterson AH, Bonierbale M (1989) RFLP mapping in plant breeding: new tools for an old science. Biotechnol 7: 257-264. Tapia G, Verdugo I, Yanez M, Ahumada I, Theoduloz C, Cordero C, Poblete F, Gonzalez E, Ruiz-Lara S (2005) Involvement of ethylene in stress-induced expression of the TLC1.1 retrotransposon from Lycopersicon chilense Dun. Plant Physiol 138: 2075-2086. Taylor IB, Burbidage A, Thompson AJ (2000) Control of abscisic acid synthesis. J Exp Bot 51:1563-1574. Tedder TF, Strueli M, Schlossman SF, Saito H (1988) Isolation and structure of a cDNA encoding b1 (CD20) cell-surface antigen of human B lymphocytes. Proc Natl Acad Sci 85: 208-212. Tester M, Bacic AA (2005) Abiotic stress tolerance in grasses. From model plants to crop plants. Plant Physiol 137: 791-793. Tester M, Davenport R (2003) Na+ tolerance and Na+ transport in higher plants. Ann Bot 91: 503-527. Thorup TA, Tanyolac B, Livingstone KD, Popovsky S, Paran I, Jahn M (2000) Candidate gene analysis of organ pigmentation loci in the Solanaceae. Proc Natl Acad Sci USA 97: 11192-11197. Tran LS, Mochida K (2010) Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean. Plant Signal Behav 5: 255-257. Tseng MJ, Liu CW, Yiu JC (2007) Enhanced tolerance to sulfur dioxide and salt stress of transgenic Chinese cabbage plants expressing both superoxide dismutase and catalase in chloroplasts. Plant Physiol Biochem 45: 822-833. Tsuda K, Yamazaki K (2004) Structure and expression analysis of three subtypes of Arabidopsis MBF1 genes. Biochim Biophys Acta 1680: 1-10.


145

Turan MA, Elkarim AHA, Taban N, Taban S (2009) Effect of salt stress on growth, stomatal resistance, proline and chlorophyll concentrations on maize plant. African J Agril Res 4: 893-897. Uchida A, Jagendorf AT, Hibino T, Takabe T, Takabe T (2002) Effects of hydrogen peroxide and nitric oxide on both salt and heat stress tolerance in rice. Plant Sci 163: 515-523.

Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata A, Akiyama K, Kurotani A, Yoshida T, Mochida K et al (2008) Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res 15: 333-346. Urao T, Yabukov B, Satoh R, Yamaguchi-Shinozaki K, Seki M, Hirayama T, Shinozaki K (1999) A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor. Plant Cell 11: 1743-1754. Vaidyanathan H, Sivakumar P, Chakrabarsty R, Thomas G (2003) Scavenging of reactive oxygen species in NaCl-stressed rice (Oryza sativa L.) differential response in salt-tolerant and sensitive varieties. Plant Sci 165: 1411-1418. Valko M, Rhodes CJ, Moncol J, Izakovic M, Mazur M (2006) Free radicals, metals and antioxidants in oxidative stress-induced cancer. Chem Biol Interact 16: 01-40. van den Berg N , Crampton BG, Hein I, Birch PRJ, Berger DK (2004) High-throughput screening of suppression subtractive hybridization cDNA libraries using DNA microarray analysis. BioTechniques 37: 818-824. van-Nocker S, Ludwig P (2003) The WD-repeat protein superfamily in Arabidopsis: Conservation and divergence in structure and function. BMC Genomics 4: 50-61. Vaze A, Nerkar G, Pagariya M, Devarumath RM, Prasad DT (2010) Isolation and PCR amplification of genomic DNA from dry leaf samples of sugarcane. Int J Pharm Sci Bio (Online ISSN 0975-6299). Velculescu VE, Zhang L, Vogelstein B, Kinzler KW (1995) Serial analysis of gene expression. Science 270: 484-487. Venstrand HS, Olofsson M, Samuelsson M (2004) Strid induction of early light-inducible protein gene expression in Pisum sativum after exposure to low levels of UV-B irradiation and other environmental stresses. Plant Cell Rep 22: 532-536. Verma D, Singla-Pareek SL, Rajagopal D, Reddy MK, Sopory SK (2007) Functional validation of a novel isoform of Na+/H+ antiporter from Pennisetum glaucum for enhancing salinity tolerance in rice. J Biosci 32: 621-628. Vettore AL, da Silva FR, Kemper EL, Arruda P (2001) The libraries that made SUCEST. Genet Mol Biol 24: 1-7.


146

Vettore AL, da Silva FR, Kemper EL, Souza GM, da Silva AM, Ferro MIT, Henrique-Silva F,Giglioti ÉA, Lemos MVF, Coutinho LL et al. (2003) Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane. Genome Res 13: 2725-2735. Vickers CE, Gershenzon J, Lerdau MT, Loreto F (2009) A unified mechanism of action for volatile isoprenoids in plant abiotic stress. Nature Chem Biol 5: 283-291. Vinod MS, Sharma N, Manjunatha K, Kanbar A, Prakash NB, Shashidhar HE (2006) Candidate genes for drought tolerance and improved productivity in rice (Oryza sativa L.). J Biosci 31: 69-74. Vogel JT, Zarka DG, van Buskirk HA, Fowler SG, Thomashow MF (2005) Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J 41: 195-211. Walia H, Wilson C, Wahid A, Condamine P, Cui X, Close TJ (2006) Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Funct Integr Genom 6: 143-156. Wan XY, Liu JY (2008) Comparative proteomics analysis reveals an intimate protein network provoked by hydrogen peroxide stress in rice seedling leaves. Mol Cell Proteomics 7: 1469-1488. Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance. Planta 218: 1-14. Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9: 244-252. Watt DA (2003) Aluminium-responsive genes in sugarcane: identification and analysis of expression under oxidative stress. J Exp Bot 54: 1163-1174. Wessler SR (1996) Plant retrotransposons: Turned on by stress. Curr Biol 6: 959-961. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18: 7213-7218. Wiegand CL, Escobar DE, Lingle SE (1996) Growth and yield responses of sugarcane to saline soils: I. Sensing and mapping using aerial videography. Proc Inter American Sugarcane Semi 15-17. Willekens H, Inze D, van Montagu M, van Camp W (1995) Catalases in plants. Mol Breed 1: 207-228.


147

Williams J, Kubelik A, Livak K, Rafalski J, Tingey S (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535. Woo HR, Chung KM, Park JH, SA Oh, T Taejin, Hong SH, Jang SK, Nam HG (2001) ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell 13: 1779-1790. Xie R, He Z, Liu F, Zou H, Zhu J, Yu G (2006) Identification of genes induced during Medicago sativa nodule development by using the cDNA-AFLP technique. Chin Sci Bull 51: 2087-2094. Xiong L, Schumaker KS, Zhu JK (2002) Cell signaling during cold, drought, and salt stress. Plant Cell 14: 165-183. Xiong L, Yang Y (2003) Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell 15: 745-759. Yan A, Zhang L, Zhang Y, Wang D (2009) Early stage SSH library construction of wheat near isogenic line TcLr19 under the stress of Puccinia recondita f. sp. tritici. Front Agric China 3: 146-151. Yanagisawa S (1998) Transcription factors in plants: Physiological functions and regulation of expression. J Plant Res 111: 363-371. Yancey PH, Clark ME, Hand SC, Bowlus RD, Somero GN (1982) Living with water stress: evolution of osmolyte systems. Science 217: 1214-1222. Yao Y, Ni Z, Du J, Wang X, Wu H, Sun Q (2006) Isolation and characterization of 15 genes encoding ribosomal proteins in wheat (Triticum aestivum L.). Plant Sci 170: 579-586. Yazaki K (2006) ABC transporters involved in the transport of plant secondary metabolites. FEBS Lett 580: 1183-1191. Yen SK, Chung MC, Chen PC, Yen HE (2001) Environmental and developmental regulation of the wound-induced cell wall protein WI12 in the halophyte ice plant. Plant Physiol 127: 517-528. Yeo AR (1994) Physiological criteria in screening and breeding. In: Yeo AR, Flowers TJ (Eds.) Soil mineral stresses, approaches to crop improvement, Springer-Verlag, Berlin, pp. 37-60.


148

Yildirim E, Turan M, Donmez MF (2008) Mitigation of salt stress in radish (Raphanus

sativus L.) by plant growth promoting rhizobacteria. Roum Biotechnol Lett 13: 3933-3943. Yiu JC, Tseng MJ (2005) Manipulation of superoxide dismutase and catalase exhibit enhanced sulfur dioxide tolerance in transgenic Chinese cabbage. Acta Hortic 692: 91-99. Yoshihashi T, Houng NTT, Kabaki N (2002) Quality evaluation of Khao Dawk Mali 105, an aromatic rice variety of Northeast Thailand. JIRCAS Work Rep 30: 151-160. Yoshimura K, Miyao K, Gaber A, Takeda T, Kanaboshi H, Miyasaka H, Shigeoka S (2004) Enhancement of stress tolerance in transgenic tobacco plants overexpressing Chlamydomonas glutathione peroxidase in chloroplasts or cytosol. Plant J 37: 21-33. Younis ME, El-Shahaby OA, Abo-Hamed SA, Ibrahim AH (2000) Effects of water stress on growth, pigments and 14CO2 assimilation in three sorghum cultivars. J Agron Crop Sci 185: 73-82. Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, et al. (2002) A draft sequence of the rice Genome (Oryza sativa L. ssp. indica). Science 296: 79-92. Zacchini M, Marotta A, de Agazio M (1997) Tolerance to salt stress in maize callus lines with different polyamine content. Plant Cell Rpt. 17: 119-122. Zang X, Komatsu S (2007) A proteomics approach for identifying osmotic-stress-related proteins in rice. Phytochem 68: 426-437. Zeng Q, Chen X, Wood AJ (2002) Two early light-inducible protein (ELIP) cDNAs from the resurrection plant Tortula ruralis are differentially expressed in response to desiccation, rehydration, salinity, and high light. J Exp Bot 53: 1197-1205. Zeng YL, Zhang DQ, Ming FH, Song ZD, Han X, Jiang P (2010) Key differentially expressed cDNAs in cold-stressed SSH library of Ceratoides lanata - This paper appears in: Bioinformatics and biomedical engineering (iCBBE), 4th International Conference pp.1-3. Zhang L, Ma XL, Zhang Q, Ma CL, Wang PP, Sun YF, Zhao YX, Zhang H (2001) Expressed sequence tags from a NaCl-treated Suaeda salsa cDNA library. Gene 267: 193-200. Zhang XN, Qu ZC, Wan YZ, Zhang HW, Shen DL (2002) Application of suppression subtractive hybridization (SSH) to cloning differentially expressed cDNA in Dunaliella salina (chlorophyta) under hyperosmotic shock. Plant Mol Biol Reporter 20: 49-57.


149

Zhao J, Liu Y, Wei X, Yuan C, Yuan X, Xiao X (2009) A novel WD-40 repeat protein WDR26 suppresses H2O2-induced cell death in neural cells. Neurosci Lett 460: 66-71.

Zheng BS, Yang L, Zhang WP, Mao CZ, Wu YR, Yi KK, Liu FY, Wu P (2003) Mapping QTLs and candidate genes for rice root traits under different water-supply conditions and comparative analysis across three populations. Theor Appl Genet 107: 1505-1515. Zhou J, Li F, Wang JL, Ma Y, Chong K, Xu YY (2009) Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis. J Plant Physiol 166: 1296-1306. Zhu JK (2001) Plant salt tolerance. Trends Plant Sci 6: 66-71.

Zhu J, Shi H, Lee B, Damsz B, Cheng S, Stirm V, Zhu JK, Hasegawa PM, Bressan RA (2004) An Arabidopsis homeo domain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. PNAS 101: 9873-9878.

Zhu P, Hasegawa M, Bressan RA (2005) HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants. 102: 9966-9971. Zielinski RE (1998) Calmodulin and calmodulin-binding proteins in plants. Annu Rev Plant Physiol Plant Mol Biol 49: 697-725. Zwenger S, Basu C (2007) In silico analysis of terpene synthase genes in Arabidopsis

thaliana. EXCLI Journal 6: 203-211.

Documents

BIBLIOGRAPHY - Shodhgangashodhganga.inflibnet.ac.in/bitstream/10603/4336/14/14... · 2015-12-04 · Fernandes L, Silva SP, Donadi EA, Hojo ETS, Passos GAS, Soares CMA, Brigido MM,