1
Basic University Training in Biological & Biomedical Science Escherichia Genomics P.Ltd Mobile: 91+9716159717, 91+ 9560757331, 91+ 011-43090505 Email: , [email protected] [email protected] E scherichia G enomics Escherichia Genomics P.Ltd feels that the biotechnology, life science and biomedical sciences required customized, flexible, cost effective, and convenient education, training and consulting for organization. We make our biotechnology, life science and biomedical training courses to prepare and maintain the knowledge, skills and abilities of biotechnology, life sciences and biomedical professionals through trained quality individuals with diverse skills needs. The training programme includes changes in mindset and thinking patterns, eliminating fears and identifying strengths and talents. Strengthening the moving intelligence of a person is a fundamental part of this programme. We can help you: Stay competitive, upgrade skills, prepare to for start-up, increase productivity, promote continuous improvement, Apply online : www.escherichiagenomics.com MODULE: 1. HANDS ON: 15 DAYS Molecular Marker: (RAPD, ISSR) Gel Preparation Electrophoresis, Gel analysis, RAPD, ISSR, SSR, STR, AFLP, Etc DNA PCR Image: Image Preparation, Scoring of Amplicons / Binary Preparation, Allele, Data Analysis: A. Monomorphic Allele Frequency, Polymorphic Allele Frequency, B. Average Amplicons, Unique Allele, Private Allele, Fix Allele, C. Diversity Coefficient (Distance Matrix) D. Jaccard`S Diversity Coefficient E. UPGMA / SHAN Cluster F. Neighbor Joining Methods G. Dendrogram/phylogentic tree H. Principle coordinate analysis I. Banding Pattern, Application Of Banding Pattern, J. Primer Discriminatory Power, K. Polymorphic Information Content (PIC Value) L.Effective Multiplex Ratio (EMR) M. Marker Index / Multiplex Ratio (MR) N. Average Heterozygosity O. Resolving Power (Rp) P. Band Informativeness Software Analysis: A. NTsys PC program, B. FAMD, C. Darwin, D. Mega 5 E. POPgene G. Metapiga & other important software in use. MODULE: 2. HANDS ON: 5 DAYS Fundamental Principle of DNA Barcoding Barcode Data Standard Compliance A. Vouchering and archiving of vouchers B. Imaging and archival of e-vouchers C. Provenance data quality D. Sequence and trace file quality E. Acquisition and Handling of Specimens Field Collection A. Legal issues B. Logistics C. Data quality and acquisition D. Collection/preservation methods Museum Harvesting A. Deciding which collections to use B. Deciding which specimens/samples to use C. Destructive vs. non-destructive handling; D. Voucher recovery protocols E. Biological material transfer policies Laboratory Methods and Information Management DNA Extraction A. Equipment B. Methods/protocols C. Storage and shipment of DNA extracts PCR Amplification A. Equipment B. Methods/protocols C. PCR product verification D. Shipment of PCR products Taxon-specific aspects of the barcoding a. Plants b. Algae c. Fungi d. Marine invertebrates e. Terrestrial invertebrates and Vertebrate Protein Techniques (Principle, Methods and Protocols) 1.Protein Isolation: a.Protein Isolation Principle and Methods b.Bacterial Protein Isolation c.Plant Protein Isolation 2.Protein SDS-PAGE Electrophoresis a.Solution Preparation b.Resolving Gel Preparation c.Stacking Gel Preparation d.Sample Preparation e.Gel Casting f.Sample Loading g.Gel Staining h.Gel destaining i.Gel Documentation and Analysis. A.How To Write A Molecular Marker/SDS-Page/Barcoding And DNA Fingerprinting Research Paper. (Exercise) 1.How To Write Abstract 2.How To Write Introduction 3.How To Write Material And Method 4.How To Write Result And Discussion 5.How To Write Reference 6. How To Write Acknowledgment MODULE: 3. HANDS ON: 5 DAYS RAPD Profile Dendrogram Barcode of Binary Eligibility Professionals from Private/Govt./NGOs/University / Faculty, Research scholars,(Ph.D Student), and Student from B.Tech/ M.Sc/ M.Tech/ M.V.Sc in Biotechnology, Molecular & Human Genetics, Molecular Biology & Biotechnology, Neuro-Science, Biochemical Engineering & Biotechnology, Bio-process Technology, General/ Agricultural/ Industrial/ Marine/ Medical/ Pharmaceutical/Environmental/Plant/ Food/Animal Biotechnology Forensic life sciences and applied discipline are eligible to apply. Fee: 1. Indian Candidate: 2. Foreign Candidate: Escherichia Genomics P.Ltd INR 9500/per student and INR 10,000/per faculty. USD 1000/per student and USD 1200/per faculty. (Including Accommodation and Fooding) 3. Payment Option : Cheque / Online Transfer / DD in favour of Contact Person V.K. Singh Managing Director: Project and Training Escherichia Genomics P.Ltd Mobile: 91+9716159717, 91+ 9560757331, 91+ 011-43090505 Email: , [email protected] [email protected] Basic Molecular Biology Techniques Overview Introduction: Laboratory Etiquette, Molecular Biology Techniques, Laboratory Protocols, DNA Techniques (Principle, Methods and Protocols) 1.DNA Isolation from Different Cell and Tissue 2.DNA Purification Isolated from Different Cell and Tissue 3.DNA Quantification methods 4.DNA Agarose Electrophoresis 5.DNA Dilution for Restriction, PCR and Ligation Reactions 6.PCR Reaction Cocktail Preparation, PCR Program. 7.PCR product Electrophoresis, PCR Result Analysis Plasmid DNA Techniques (Principle, Methods and Protocols) 1.Plasmid DNA Isolation from Different Cell line 2.Plasmid DNA Purification Isolated from Different Cell line 3.Plasmid DNA Agarose Electrophoresis 4.Plasmid DNA Dilution for Restriction, PCR and Ligation reactions Organelles DNA Techniques (Principle, Methods and Protocols) 1.Chloroplast DNA Isolation from Different Cell and tissue 2.Mitochondrial DNA Isolation from Different Cell and tissue RNA Techniques (Principle, Methods and Protocols) 1.RNA Isolation from Different Cell and Tissue 2.RNA Purification Isolated from Different Cell and Tissue 3.RNA Quantification Methods 4.RNA Agarose Electrophoresis 5.RNA Dilution for PCR Reactions 6.RNA Reaction Cocktail Preparation, PCR Program. 7.PCR Product Electrophoresis , PCR Result analysis PCR Techniques (Principle, Methods and Protocols) 1.Type of PCR , Multiplex-PCR, Nested PCR, Quantitative PCR, Hot-start PCR, Touchdown PCR, Assembly PCR, Colony PCR, RT-PCR (or Reverse Transcription PCR), Ligation-mediated PCR, Methylation-specific PCR (MSP) etc 2.Primer Designing and Primer Modifications 3.Primer Annealing Temperature, GC Content , Gradient PCR 4.PCR optimization:(magnesium ion (Mg++), Denaturants (such as DMSO, glycerol) and Triton X-100) 5.PCR Reaction Cocktail Preparation, PCR Program. 6.PCR Result and Analysis Molecular Marker and DNA Fingerprinting (Software and Statistical Analysis) DNA BARCODING RESEARCH PAPER WRITING SDS-PAGE PROFILE 1 2 3 4 M Jaccard Coefficient PCA X Y Z -0.40 -0.40 -0.40 -0.30 -0.30 -0.30 -0.20 -0.20 -0.20 -0.10 -0.10 -0.10 0.00 0.00 0.00 0.10 0.10 0.10 0.20 0.20 0.20 0.30 0.30 0.30 0.40 0.40 0.40 Apis mellifera-Illustrative DNA Barcode Accommodation : manage by trainee, while our team will assist in getting the accommodation near laboratory premise ( p.g., hostel a/c or non a/c ) : 9716159717 28 S RNA 18 S RNA 5 S RNA RNA ELECTROPHORESIS PCR Machine Programming & Operation Start from 5th Oct. 2014 to 30th Oct. 2014 (Last Date to Apply 30th Sep. 2014)

Basic University Training in Biological & Biomedical Science · 2.Mitochondrial DNA Isolation from Different Cell and tissue RNA Techniques (Principle, Methods and Protocols) 1.RNA

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Page 1: Basic University Training in Biological & Biomedical Science · 2.Mitochondrial DNA Isolation from Different Cell and tissue RNA Techniques (Principle, Methods and Protocols) 1.RNA

Basic University Training in Biological & Biomedical Science Escherichia Genomics P.Ltd

Mobile: 91+9716159717, 91+ 9560757331, 91+ 011-43090505Email: , [email protected] [email protected]

Escherichia Genomics

Escherichia Genomics P.Ltd feels that the biotechnology, life science and biomedical sciences required customized, flexible, cost effective, and convenient education, training and consulting for organization. We make our biotechnology, life science and biomedical training courses to prepare and maintain the knowledge, skills and abilities of biotechnology, life sciences and biomedical professionals through trained quality individuals with diverse skills needs. The training programme includes changes in mindset and thinking patterns, eliminating fears and identifying strengths and talents. Strengthening the moving intelligence of a person is a fundamental part of this programme. We can help you: Stay competitive, upgrade skills, prepare to for start-up, increase productivity, promote continuous improvement,

Apply online : www.escherichiagenomics.com

MODULE: 1. HANDS ON: 15 DAYS

Molecular Marker: (RAPD, ISSR) Gel Preparation Electrophoresis, Gel analysis, RAPD, ISSR, SSR, STR, AFLP, EtcDNA PCR Image: Image Preparation, Scoring of Amplicons /Binary Preparation,

Allele,

Data Analysis: A. Monomorphic Allele Frequency, Polymorphic Allele Frequency, B. Average Amplicons, Unique Allele, Private Allele, Fix Allele, C. Diversity Coefficient (Distance Matrix) D. Jaccard`S Diversity CoefficientE. UPGMA / SHAN Cluster

F. Neighbor Joining MethodsG. Dendrogram/phylogentic treeH. Principle coordinate analysis

I. Banding Pattern, Application Of Banding Pattern, J. Primer Discriminatory Power, K. Polymorphic Information Content (PIC Value)L.Effective Multiplex Ratio (EMR) M. Marker Index / Multiplex Ratio (MR)N. Average HeterozygosityO. Resolving Power (Rp)P. Band Informativeness

Software Analysis:

A. NTsys PC program, B. FAMD, C. Darwin, D. Mega 5 E. POPgene G. Metapiga & other important software in use.

MODULE: 2. HANDS ON: 5 DAYS

Fundamental Principle of DNA Barcoding Barcode Data Standard Compliance A. Vouchering and archiving of vouchersB. Imaging and archival of e-vouchers C. Provenance data qualityD. Sequence and trace file qualityE. Acquisition and Handling of Specimens Field Collection A. Legal issuesB. Logistics C. Data quality and acquisition D. Collection/preservation methods Museum Harvesting A. Deciding which collections to useB. Deciding which specimens/samples to useC. Destructive vs. non-destructive handling; D. Voucher recovery protocols E. Biological material transfer policiesLaboratory Methods and Information Management DNA Extraction A. Equipment B. Methods/protocols C. Storage and shipment of DNA extracts PCR Amplification A. Equipment B. Methods/protocols C. PCR product verification D. Shipment of PCR products Taxon-specific aspects of the barcoding a. Plants b. Algae c. Fungi d. Marine invertebrates e. Terrestrial invertebrates and Vertebrate

Protein Techniques (Principle, Methods and Protocols)

1.Protein Isolation: a.Protein Isolation Principle and Methodsb.Bacterial Protein Isolationc.Plant Protein Isolation

2.Protein SDS-PAGE Electrophoresisa.Solution Preparation b.Resolving Gel Preparationc.Stacking Gel Preparationd.Sample Preparation

e.Gel Casting f.Sample Loading g.Gel Staining h.Gel destaining i.Gel Documentation and Analysis.

A.How To Write A Molecular Marker/SDS-Page/Barcoding And DNA Fingerprinting Research Paper. (Exercise)1.How To Write Abstract 2.How To Write Introduction 3.How To Write Material And Method 4.How To Write Result And Discussion5.How To Write Reference 6. How To Write Acknowledgment

MODULE: 3. HANDS ON: 5 DAYS

RAPD Profile

Dendrogram

Barcode of Binary

EligibilityProfessionals from Private/Govt./NGOs/University / Faculty, Research scholars,(Ph.D Student), and Student from B.Tech/

M.Sc/ M.Tech/ M.V.Sc in Biotechnology, Molecular & Human Genetics, Molecular Biology & Biotechnology, Neuro-Science,

Biochemical Engineering & Biotechnology, Bio-process Technology, General/ Agricultural/ Industrial/ Marine/ Medical/

Pharmaceutical/Environmental/Plant/ Food/Animal Biotechnology Forensic life sciences and applied discipline are eligible

to apply.

Fee:1. Indian Candidate:

2. Foreign Candidate:

Escherichia Genomics P.Ltd

INR 9500/per student and INR 10,000/per faculty.

USD 1000/per student and USD 1200/per faculty. (Including

Accommodation and Fooding)

3. Payment Option : Cheque / Online Transfer / DD in favour of

Contact PersonV.K. Singh

Managing Director: Project and Training Escherichia Genomics P.Ltd

Mobile: 91+9716159717, 91+ 9560757331, 91+ 011-43090505Email: , [email protected] [email protected]

Basic Molecular Biology Techniques

Overview Introduction: Laboratory Etiquette, Molecular Biology Techniques, Laboratory Protocols,

DNA Techniques (Principle, Methods and Protocols)1.DNA Isolation from Different Cell and Tissue2.DNA Purification Isolated from Different Cell and Tissue3.DNA Quantification methods 4.DNA Agarose Electrophoresis 5.DNA Dilution for Restriction, PCR and Ligation Reactions6.PCR Reaction Cocktail Preparation, PCR Program.7.PCR product Electrophoresis, PCR Result Analysis

Plasmid DNA Techniques (Principle, Methods and Protocols)1.Plasmid DNA Isolation from Different Cell line2.Plasmid DNA Purification Isolated from Different Cell line 3.Plasmid DNA Agarose Electrophoresis 4.Plasmid DNA Dilution for Restriction, PCR and Ligation reactions

Organelles DNA Techniques (Principle, Methods and Protocols)1.Chloroplast DNA Isolation from Different Cell and tissue2.Mitochondrial DNA Isolation from Different Cell and tissue

RNA Techniques (Principle, Methods and Protocols)1.RNA Isolation from Different Cell and Tissue2.RNA Purification Isolated from Different Cell and Tissue3.RNA Quantification Methods 4.RNA Agarose Electrophoresis 5.RNA Dilution for PCR Reactions6.RNA Reaction Cocktail Preparation, PCR Program.7.PCR Product Electrophoresis , PCR Result analysis

PCR Techniques (Principle, Methods and Protocols)1.Type of PCR , Multiplex-PCR, Nested PCR, Quantitative PCR, Hot-start PCR, Touchdown PCR, Assembly PCR, Colony PCR, RT-PCR (or Reverse Transcription PCR), Ligation-mediated PCR, Methylation-specific PCR (MSP) etc2.Primer Designing and Primer Modifications 3.Primer Annealing Temperature, GC Content , Gradient PCR 4.PCR optimization:(magnesium ion (Mg++), Denaturants (such as DMSO, glycerol) and Triton X-100) 5.PCR Reaction Cocktail Preparation, PCR Program.6.PCR Result and Analysis

Molecular Marker and DNA Fingerprinting (Software and Statistical Analysis)

DNA BARCODING

RESEARCH PAPER WRITING

SDS-PAGE PROFILE

1 2 3 4 M

Jaccard Coefficient

PCA

X

Y

Z-0.40

-0.40

-0.40-0.30

-0.30

-0.30-0.20

-0.20

-0.20-0.10

-0.10

-0.100.00

0.000.000.10

0.10

0.100.20

0.20

0.200.30

0.30

0.300.40

0.40

0.40 Apis mellifera-Illustrative DNA Barcode

Accommodation : manage by trainee, while our team will assist in getting the accommodation near laboratory premise ( p.g., hostel a/c or non a/c )

: 9716159717

28 S RNA 18 S RNA

5 S RNA

RNA ELECTROPHORESIS

PCR Machine Programming & Operation

Start from 5th Oct. 2014 to 30th Oct. 2014 (Last Date to Apply 30th Sep. 2014)