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Alzheimer’s disease: new approaches to drug discoveryMaria L Bolognesi, Riccardo Matera, Anna Minarini, Michela Rosini andCarlo Melchiorre
In this work, we review and comment upon the challenges and
the ‘quo vadis’ in Alzheimer’s disease drug discovery at the
beginning of the new millennium. We emphasize recent
approaches that, moving on from a target-centric approach,
have produced innovative molecular probes or drug
candidates. In particular, the discovery of endosome-targeted
BACE1 inhibitors and mitochondria-targeted antioxidants
represents a significant advance in Alzheimer’s research and
therapy. The case study of the development of rasagiline
provides an excellent example to support the validity of the
multitarget-designed ligand approach to the search for
effective medicines for combating Alzheimer’s disease.
Address
Department of Pharmaceutical Sciences, Alma Mater Studiorum,
University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy
Corresponding author: Melchiorre, Carlo ([email protected])
Current Opinion in Chemical Biology 2009, 13:303–308
This review comes from a themed issue on
Next-generation therapeutics
Edited by Karl-Heinz Altmann and Dario Neri
Available online 19th May 2009
1367-5931/$ – see front matter
# 2009 Elsevier Ltd. All rights reserved.
DOI 10.1016/j.cbpa.2009.04.619
IntroductionAlzheimer’s disease (AD) represents one of the most
formidable challenges to the drug discovery community
[1]. Although a breakthrough treatment has been
promised repeatedly in the last 30 years, an effective
drug for AD has yet to arrive. We are all aware of its
socioeconomic and clinical burden. In developed
countries, AD is the fourth cause of death, and on the
basis of constant increase in life expectancy in western
societies, it is estimated that AD cases will triple by
2050. On the clinical front, AD is the most common form
of dementia, characterized by memory loss and impair-
ment in reasoning, judgment, and language. More and
more of us are experiencing the devastating effects of
having a close friend or family member with the con-
dition [2].
Today, medicinal chemistry projects rely mostly on
target-driven high-throughput approaches. This is
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because, since the early 1990s, drug discovery has gradu-
ally moved from an entirely human phenotype-based
endeavor to the so-called ‘reductionist approach’ [3].
This strategy attempts to reduce drug action to the level
of individual genes, single proteins, and one potential
modulating molecule, following the ‘one gene, one tar-
get, one drug’ paradigm [4]. Drug discovery in AD has
followed the same trend. Over the last 30 years, different
targets have been advocated as central players in AD
pathogenesis. Firstly, following the cholinergic hypoth-
esis [5], acetylcholinesterase (AChE) inhibition was vali-
dated as a therapeutic strategy, and a new generation of
centrally active AChE inhibitors (AChEIs) were regis-
tered for the treatment of mild to moderate AD. Later,
efforts to develop NMDA receptor antagonists as AD
drugs were stimulated by evidence that NMDA receptor-
mediated excitotoxicity is a central pathogenic event in
AD. The introduction of memantine in 2003 provided
patients with moderate to severe AD with a new thera-
peutic option [6].
However, owing to disappointing clinical results, the
effectiveness of these tools has been questioned [7],
and the search for real disease-modifying agents has
begun [8]. Previously, the question was: ‘Which is the
best target for preventing or curing AD?’. The answer
was in part determined by whether scientists saw b-
amyloid peptide (Ab) (also called BAP, among its many
other names) or hyperphosphorylated tau as the prime
culprit of the pathogenesis cascade leading to AD. This
dichotomy has been caricatured in the field as a reli-
gious war between the ‘baptists’ and the ‘tauists’ [9].
But, once again, attention was paid for developing
single target-directed ligands. A major group of drug
candidates in the pipeline works by diminishing the
concentration of Ab, while the other chief approach has
produced compounds targeting the protein tau. But
neither approach has thus far led to new medicines
to combat AD [10].
The medicinal chemist viewpoint has been profoundly
influenced by the reductionist approach. But, by think-
ing about drug discovery in a very different way, embra-
cing a system approach, one can look at the big picture
and complexity typical of the disease. The early signs of
this paradigm shift are now being registered, as AD is
now increasingly studied at multiple levels, and new
scientific advancements are providing insights into the
functioning of interacting biomolecules within cells or
organisms [11]. In this review, we highlight recent
Current Opinion in Chemical Biology 2009, 13:303–308
304 Next-generation therapeutics
examples of innovative molecules and drug candidates
that have been developed following a more holistic
approach, rather than being exclusively focused on a
single protein target.
Zooming out: from target proteins to targetorganellesBecause the amyloid hypothesis has been the prevailing
model of molecular pathogenesis in AD [12], most drug
discovery efforts have been concentrated on reducing/
modulating Ab production. Several strategies, which tar-
get different steps of the amyloid cascades from its
production (from amyloid precursor protein, APP) to its
deposition (antichelation therapies, vaccine) and its
inflammatory effects (anti-inflammatory drugs), have
been pursued [13].
The generation of Ab from APP occurs by sequential
proteolysis by b-secretase and g-secretase enzymes. In
this regard, the aspartic protease b-secretase (BACE1)
plays a key role, as its cleavage of APP is the limiting step
in Ab production. Thus, BACE1 has been considered an
ideal target for the reduction of Ab, and detailed knowl-
Figure 1
Illustration of the transition-state inhibitor linked to a sterol moiety targeting
releases the soluble APP (sAPPb) fragment. This generates a membrane-te
secretase to afford Ab (in red).
Current Opinion in Chemical Biology 2009, 13:303–308
edge of its structure, localization, activity, and regulation
validated its role in the development of drugs for the
treatment of AD [14]. The crystal structure of BACE1 was
crucial for understanding the catalytic activity of the
enzyme and for structure-based design of inhibitors
[15]. Initially, several peptidic transition-state inhibitors
were designed, but they were too large to either penetrate
the blood–brain barrier or be useful as drug candidates.
Therefore, the late generation inhibitors are no longer
peptidic or peptidomimetic ligands, but relatively small
molecules [16–18]. For some of them, such as GRL-8234,
the ability to penetrate membranes and to inhibit Ab
production is well demonstrated in transgenic mice [19].
In 2007, a compound named CTS-21166, belonging to
small-molecule transition-state analog, began Phase I of
clinical trials (see CoMentis announcement at http://
www.athenagen.com/index.php?/athenagen/press_re-
leases/48). However, many of the BACE1 inhibitors
developed so far inhibit APP binding to the active site,
but underestimate the fact that the main location of
enzyme activity is in endosomes. This might explain
the poor results obtained with some inhibitors in cellular
assays [20].
the active BACE1 found in endosomes. Cleavage of APP by BACE1
thered C-terminal fragment (bCTF) that is subsequently cleaved by g-
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Anti-Alzheimer leads and drug candidates Bolognesi et al. 305
Figure 2
Illustration of MitoQ targeting mitochondrion.
In fact, although ubiquitously expressed, BACE1 mRNA
has the highest expression levels in the mammalian brain,
and is found in acidic organelles of the endosomes and
trans-Golgi network [21]. This is consistent with the
discovery that BACE1 cleavage of APP occurs predomi-
nantly in endosomes, and that endocytosis of APP and
BACE1 is essential for Ab production. BACE1 activity
and access to substrates are regulated by the composition
of lipid raft domains in the membrane bilayer. Endo-
somes have high lipid raft and cholesterol content, critical
in regulating APP endocytosis with increased amyloido-
genic processing. In order to overcome this crucial issue,
an innovative approach was recently reported, consisting
of targeting inhibition to the subcellular compartment
where the enzyme is active. A membrane-anchored b-
secretase transition-state inhibitor was synthesized by
coupling via a poly(ethylene glycol) linker the inhibitor
to a sterol moiety (Figure 1) [22��]. This inhibitor effi-
ciently targeted b-secretase in endosomes via endocyto-
sis, significantly enhancing the inhibitor efficacy, both in
cell culture and in fly and mouse models of AD. Although
it is too early to say whether this approach will lead to a
functional drug therapy, the authors postulate that this
membrane-tethering strategy might also be useful for
designing inhibitors against other disease-associated
membrane proteins.
Another emerging player in AD pathogenesis is the
organelle mitochondrion [23��,24]. Multiple lines of evi-
dence suggest that mitochondrial dysfunction plays a
crucial role in the pathogenesis of AD [25]. This evidence
comes from impaired activities of the three key enzymes
of the respiratory chain complexes I, III, and IV found in
AD patients and postmortem in AD brain tissues. In
addition to a direct mitochondrial respiratory chain
defect, increased autophagic degradation of mitochondria
has also been detected in AD [26]. Moreover, mitochon-
dria are among the major intracellular targets of soluble
Ab oligomers [27]. The accumulation of Ab in mitochon-
dria precedes extracellular amyloid deposition and
increases with age. Soluble Ab localizes to mitochondria
and interferes with their normal functioning, disrupting
the electron-transport chain, causing ROS overproduc-
tion, and contributing to synaptic damage [28]. The
increased oxidative stress exhibited by synaptic mito-
chondria might damage several biomolecules, including
lipids, proteins, and nucleic acids, and, in a vicious
manner, reinforces Ab production [29].
On the basis of the consideration that mitochondria are a
major source of ROS and are particularly vulnerable to
oxidative stress, one would predict that antioxidants that
alleviate mitochondrial dysfunction could be beneficial in
AD. This prompted researchers to deliver the antioxidant
therapy to this organelle specifically, through the devel-
opment of purposely designed mitochondria-targeted
antioxidants [26,30]. This might overcome the apparent
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clinical inefficiency of antioxidants that do not target
oxidative stress in this organelle specifically [31]. At
the forefront of this approach, MitoQ is an orally active
antioxidant currently in development by Antipodean
Pharmaceuticals Inc, now undergoing Phase II clinical
trials for the potential treatment of several diseases in
which mitochondrial oxidative damage is implicated,
including neurodegenerative diseases [32].
MitoQ comprises a ubiquinone moiety, the antioxidant
component of the respiratory chain constituent coenzyme
Q10 (CoQ10), covalently linked by an aliphatic 10-carbon
chain to the lipophilic cation triphenylphosphonium, that
drives its selective uptake into mitochondria in a mem-
brane potential-dependent manner (Figure 2). Once
internalized by mitochondria, it adsorbs in the phospho-
lipid bilayers, where it is readily reduced to the active
ubiquinol form MitoQH2, which exerts its antioxidant
properties [33].
MitoQ is a promising antioxidant candidate for treating
AD patients [31]. Penetrating into mitochondria several
hundred-fold more than natural antioxidants do, it rapidly
neutralizes free radicals at their source and before they
reach their targets, with an improved therapeutic poten-
tial [34].
Multiple targets are better than one: the casestudy of ladostigilAD is currently recognized as a complex neurodegenera-
tive disorder with a multifaceted pathogenesis. This may
explain why the currently available drugs, developed
according to the reductionist paradigm of ‘one-mol-
Current Opinion in Chemical Biology 2009, 13:303–308
306 Next-generation therapeutics
Figure 3
Pathways leading to the discovery of new medications: (a) target-driven drug discovery approach, that is, the application of the current one-molecule-
one-target paradigm. Although this approach has led to many effective drugs able to hit a single target, it is now well-documented that these drugs
may represent the exception rather than the rule. (b) MTDLs approach to drug discovery. A drug could recognize (in principle, with comparable
affinities) different targets involved in the cascade of pathological events leading to a given disease. Thus, such a medication would be highly effective
for treating multifactorial diseases, such as AD. The design of such a drug may not be easy because it could also bind targets that are not involved with
the disease and could be responsible (although not necessarily) for side effects. Adapted from Ref. [36].
Figure 4
The design strategy leading to the anti-Alzheimer MTDL ladostigil.
ecule-one-target,’ have turned out to be palliative rather
than curative. In light of this, drug combinations that can
act at different levels of the neurotoxic cascade offer new
hopes toward curing AD and other neurodegenerative
diseases [35]. In parallel, a new strategy is emerging —
that is the development of single chemical entities able to
modulate multiple targets simultaneously, with superior
efficacy and safety profiles. This approach has led to a
new paradigm in medicinal chemistry, the ‘multitarget-
directed ligand’ (MTDL) design strategy (Figure 3),
which has been successfully exploited at both academic
and industrial levels in the fields of AD [36,37] and
similarly complex diseases [38�,39�]. The main criticism
is that this approach is resource hungry, because the
rational design of MTDLs has to deal with the critical
issues of affinity balancing and pharmacokinetics. How-
ever, as proof of principle, and to support the view that
MTDLs are destined to become the mainstream of AD
therapeutics in the years to come, we briefly discuss the
biological profile of ladostigil (TV-3326), an MTDL
developed by Youdim [40], which is currently in Phase
II clinical trials for AD.
The design of MTDLs is based on the combination of
two or more pharmacophores acting on different AD
targets. In particular, ladostigil was designed by merging
the structures of rivastigmine, an AChEI, and rasagiline,
a selective MAO-B inhibitor (Figure 4). Thanks to these
chemical features, ladostigil showed the ability to inhi-
bit both cholinesterases (AChE and butyrylcholinester-
ase) and brain monoamine oxidases (MAO-A and MAO-
B). The block of MAOs avoids hydrogen peroxide
generation, thus preventing the Fenton reaction and
Current Opinion in Chemical Biology 2009, 13:303–308
the formation of neurotoxic free radical species. In
addition, MAOs’ inhibition confers potential anti-
depressant activity by increasing the levels of dopamine,
noradrenaline, and serotonin in the central nervous
system [41��]. Interestingly, in addition to its ability
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Anti-Alzheimer leads and drug candidates Bolognesi et al. 307
to inhibit MAOs and AChE, ladostigil also showed other
supplementary neuroprotective actions, such as APP
processing regulation via mitogen-activated protein
kinase-signaling pathways, and mitochondrial mem-
brane potential stabilization [42,43]. Furthermore,
ladostigil was a protective agent against oxidative
stress-induced neuronal apoptosis, increasing the anti-
oxidant enzymes’ expression and catalase activity [44].
Ladostigil increased the brain-derived nerve factor
(BDNF) mRNA expression, leading to an improved
the production of BDNF and to a consequent enhanced
neuroprotective activity [45]. Thanks to this wide
MTDL profile, ladostigil can be considered a very
promising drug for the treatment of AD.
ConclusionsThe classical physics reductionist approach in drug dis-
covery aims to examine the smallest units to gain insight
into the larger ones. This has resulted in target-centric
efforts and a recent generation of single-targeted drugs
that have not delivered the promised efficiencies. This is
because, in contrast to physics, the path from biological
particles to functional biology is often highly nonlinear
and nonpredictable, because of the many post-targeted
complex interactions that occur at the level of genes,
proteins, organelles, cells, organs, and whole bodies.
From animal models to protein models via cellular
models, there has been a decrease in complexity and a
concomitant decrease of relevance to human conditions
[46]. Conversely, many of the most severe pathologies
afflicting mankind, such as neurodegenerative diseases,
are multifactorial, where the disease phenotype arises
from the dysregulation of multiple genes, pathways,
and proteins. This complexity allows us to describe them
as ‘network diseases’ [47]. Therefore, it is conceivable
that the classical biological approaches have only enabled
us to achieve a partial understanding of their etiopatho-
genic complexities.
Currently, AD is best characterized as a multidysfunc-
tional molecular condition, where interrelated molecular
events result in amyloid formation, tau abnormalities,
amyloid accumulations, and loss of acetylcholine modu-
lation of cortical neuro-transmission [48]. Currently avail-
able drugs and most of the drugs under development for
AD treatment target one of these mechanisms, suggesting
that an MTDL is a more adequate therapeutic tool to
confront this complexity [49,50].
It is only with the new millennium that drug designers are
moving away from target-centric strategies. A system
biology approach offers an integrated and deeper inves-
tigation into the functioning of organelle and cellular
structures in a network context. These investigations,
coupled with the advancement already made in the
molecular pathways involved, may help medicinal che-
mists to design new chemical entities able to understand,
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and hopefully modify, the disease course for this devas-
tating neurodegenerative disorder.
Conflict of interestThe authors declare no financial or other potential con-
flicts of interest.
AcknowledgementsThe authors would like to thank Prof V Tumiatti for useful discussions andto apologize for not mentioning some important publications because ofspace limits. This work was supported by a grant from MIUR (PRIN n.20073EWPF9_003) and the University of Bologna.
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