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Alcohols Biological Activity Nomenclature Preparation Reactions

Alcohols Biological Activity Nomenclature Preparation Reactions

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Page 1: Alcohols Biological Activity Nomenclature Preparation Reactions

Alcohols

Biological Activity

Nomenclature

Preparation

Reactions

Page 2: Alcohols Biological Activity Nomenclature Preparation Reactions

Some Alcohols

CH3CH2OH HO

HO

CHCH2NH2

OH

adrenaline (epinephrine)

ethanol

CHCHNHCH3

OH

CH3

pseudephedrine

HO

H

H

H

cholesterol

HOCH2CHCH2OH

OH

glycerol

Page 3: Alcohols Biological Activity Nomenclature Preparation Reactions

Alcohols are Found in Many Natural Products

O

HO

HO

N CH3

H

Morphine

most abundant of opium's alkaloids

Page 4: Alcohols Biological Activity Nomenclature Preparation Reactions

Paralytic Shellfish Poisoning

N

N N

NOH

OH

H

HN

H

O

NH2O

NH

H

Saxitoxin (STX)LD50 = 2 g/kg

A possible chemical warfare agent

roughly 1000 times more toxic than saran gas or cyanide

The toxin blocks entry of sodium

required by cells to make "action potentials"

Page 5: Alcohols Biological Activity Nomenclature Preparation Reactions

N NHO

H

O

H

O

OH

OH OH

O

HO

OH

OH

OH

OHOH

OH

OHOO

OHOH

OH

HO

OH

OH OH

OH

HO

O

OH

OH

OH

HO

OH

OH

OH

OH

OH

OH

OH

OH

OH

HO

O

OH

OH

HO

OH

OH

O O

OH

H2N

PALYTOXIN

LD50 = 0.15 g/kg

Page 6: Alcohols Biological Activity Nomenclature Preparation Reactions

Ethanol: the Beverage

enz.

CH3CO2H + NADH + H+

NAD+

CH3CH2OH CH3CH

O

acetaldehydeLD50 = 1.9 g/Kg

ethanol

Ethanol is a central nervous system depressant - depresses brain areas responsible for judgement

(thus the illusion of stimulation)

alcohol dehydrogenase

NAD+ + NADH + H+

acetic acid

Page 7: Alcohols Biological Activity Nomenclature Preparation Reactions

Excess NADH can cause Metabolic Problems

(+) lactic acid

pyruvic acid is normally converted to

N

sugar

C

O

NH2

CH3CCOH

OO

CH3CHCO2H

OHH+

pyruvic acidNADH (+) lactic acid

results in: acidosis and hypoglycemia

N

sugar

C

O

NH2

CH3CCOH

OO

CH3CHCO2H

OHH+

pyruvic acidNADH

glucose (gluconeogenesis)

Page 8: Alcohols Biological Activity Nomenclature Preparation Reactions

Methanol: Not a Beverage

CH3OH

methanolHCH

O

formaldehydeLD50 = 0.07 g/Kg

NAD+ADH

+ NADH + H+

Page 9: Alcohols Biological Activity Nomenclature Preparation Reactions

Synergistic and Metabolic Effects

• In men, ethanol lowers levels of testosterone (and sperm count) due to lack of enzymes needed for the steroid biosynthesis.

• The enzyme CYP2E1, which is responsible for converting acetaminophen into liver toxins, is activated by ethanol.

• Ethanol has a caloric value of 7.1Cal/g (fat has a value of 9 Cal/g).

• Alcohol can cause a degenerative muscle disease called alcoholic myopathy (3 times more common than cirrhosis).

Page 10: Alcohols Biological Activity Nomenclature Preparation Reactions

Synergistic Effects

• Women will have higher BAL’s with the consumption of an equal number of drinks due to lower ADH activity and lower % H2O in blood.

• Estradiol levels increase in women (and men). This has been associated with higher incidences of heart disease and a change in bone density.

• A higher than normal concentration of Cytochrome P-450 enzymes (in the liver) are activated by ethanol creating a potential dependency.

Page 11: Alcohols Biological Activity Nomenclature Preparation Reactions

Antitumor Agents

• Often functionalized with alcohols

• Designed to fit into specific geometic sites on proteins

• Hydrogen bonding is crucial for binding

• Water solubility is crucial for cell membrane transport

Page 12: Alcohols Biological Activity Nomenclature Preparation Reactions

From the Bark of the Pacific Yew TreeTaxol (Paclitaxel)

O

NHO O

OH

O

O

O

OH O

O

OH

OO

O

Taxus brevifolia

Page 13: Alcohols Biological Activity Nomenclature Preparation Reactions

How Taxol Works

• A large number of microtubules are formed at the start of cell division, and as cell division comes to an end, these microtubules are normally broken down into tubulin – a protein responsible for the cell’s structural stability.

• Taxol promotes tubulin polymerization then binds to the microtubules and inhibits their depolymerization back into tubulin.

• The cell can't divide into daughter cells and therefore the cancer can’t spread.

Page 14: Alcohols Biological Activity Nomenclature Preparation Reactions

Tubulin with Taxol bound to one of the Functional Domains

CHIME diagram of tubulin

Page 15: Alcohols Biological Activity Nomenclature Preparation Reactions

Taxol Causes Cells’ Tubulin Skeleton to Aggregate in Spindles

Page 16: Alcohols Biological Activity Nomenclature Preparation Reactions

May be More Effective than Taxol

O

OH

OOHO

OS

NH

Epothilone Binhibits tubulin aggregation

Page 17: Alcohols Biological Activity Nomenclature Preparation Reactions

DNA Cross-linker

CH3

CH3OO

O O

O

NH N

O

O

HN

HO

AcO

OH

Azinomycin BStreptomyces sahachiroi

10

21

Page 18: Alcohols Biological Activity Nomenclature Preparation Reactions

Prevents DNA from Unraveling

O

O OH

OH

OCH3

OHO

OH

O

NH2OH

CH3

Doxorubicin (adriamycin)

Binds to DNA and inhibits the enzyme topoisomerase II

Page 19: Alcohols Biological Activity Nomenclature Preparation Reactions

Oxidation and Reduction3 hydrocarbon oxidation levels

CH3CH3 CH2=CH2 HC CH[O] [O]

oxidation # -3 -2 -1of carbon

Page 20: Alcohols Biological Activity Nomenclature Preparation Reactions

Oxidation levels of oxygen- halogen- and nitrogen-

containing molecules

Reduction

Oxidation

CH3CH3

CH2=CH2 HC CH

[O] [O]CH3CH2OH CH3CH=O CH3CO2H

CH3CH2Cl CH3CHCl2 CH3CCl3

CH3CH2NH2 CH3CH=NH CH3CN

[O]

Page 21: Alcohols Biological Activity Nomenclature Preparation Reactions
Page 22: Alcohols Biological Activity Nomenclature Preparation Reactions

Acidity of Alcohols

• Due to the electronegativity of the O atoms, alcohols are slightly acidic (pKa 16-18).

• The anion dervived by the deprotonation of an alcohol is the alkoxide.

• Alcohols also react with Na (or K) as water does to give the alkoxide (red-ox):

+ 1/2 H2NaCH3CH2O+ NaCH3CH2OH

Page 23: Alcohols Biological Activity Nomenclature Preparation Reactions

Withdrawing Groups Enhance Acidity

CF3 C

CF3

CF3

OCF3 C

CF3

CF3

OH + NaHCO3 Na + H2CO3

alcohol pKaCH3OH 15.54

CH3CH2OH 16.00

CF3CH2OH 12.43

(CH3)3COH 18.00

(CF3)3COH 5.4

Page 24: Alcohols Biological Activity Nomenclature Preparation Reactions

Physical Properties

CH3CH2CH3 -42 0.08 i

 

CH3OCH3 -25 1.3 ss

CH3CH2OH 78 1.7 vs

b.p. oC D sol. in H2O

Page 25: Alcohols Biological Activity Nomenclature Preparation Reactions

Intermolecular H-Bonding

O H

O H

O H

associated liquid

intermolecular H bonding

OHH

HO

HO

H

Page 26: Alcohols Biological Activity Nomenclature Preparation Reactions

Alcohol NomenclatureOH

3-heptanol OH5-methyl-6-hepten-2-ol

25

6

OH

CH3 CH3

3,3-dimethylcyclohexanol

OH

CH3 CH3

5,5-dimethylcyclohex-2-enol

1

2

5

1

3

3

Page 27: Alcohols Biological Activity Nomenclature Preparation Reactions

Nomenclature

OH

(S) 2-hexanolOH

(E) 3-methyl-3-penten-2-ol

OH

OH

OH

H

(R) 2-butyl-1,4-butanediol (R) 2-butylbutane-1,4-diol

trans 3-isopropylcyclopentanol

Page 28: Alcohols Biological Activity Nomenclature Preparation Reactions

Who am I?

HOH

Page 29: Alcohols Biological Activity Nomenclature Preparation Reactions

4-(R)-{1-(S)[cyclohexa-2,5-dienyl]ethyl}-2-methyl-6-(E)-octen-4-ol

HOH

1 2 3

45

6

78

# chain from end closestto alcohol group

1 2

12

5

Page 30: Alcohols Biological Activity Nomenclature Preparation Reactions

Preparation of Alcohols

• Reduction of ketones and aldehydes

• Reduction of esters and carboxylic acids

• Hydration of Alkenes

• Nucleophilic addition

– Grignard reaction

– Acetylide addition

• Substitution

• Epoxide opening

Page 31: Alcohols Biological Activity Nomenclature Preparation Reactions

NaBH4 Reduction

R R'

O 1) NaBH4, ethanol

2) H3O+R R'

OHH

H

R R'

OH

H3O+

Page 32: Alcohols Biological Activity Nomenclature Preparation Reactions

Some Examples

O

1) NaBH4, etherOH

CH

O

CH2OH

2) H3O+

"

Page 33: Alcohols Biological Activity Nomenclature Preparation Reactions

Two Alcohol Products Form in Lab

(CH3)3C

ONaBH4

H

(CH3)3C

ONaBH4

O

H

(CH3)3C

(CH3)3CH

O

H

Na

Na

trans

cis

axial approach

equatorial approach

Page 34: Alcohols Biological Activity Nomenclature Preparation Reactions

LiAlH4 Reductiona Stronger Reducing Agent

O

1) LiAlH4, THF

2) H3O+

OH

LiAlH4 will reduce: o

aldehydes to 1 alcoholso

carboxylic acids and esters to 1 alcoholso

ketones to 2 alcohols

Page 35: Alcohols Biological Activity Nomenclature Preparation Reactions

LiAlH4 is a much stronger reducing agent

O

O

1) LiAlH4

2) H3O+ OH

+ CH3OH

1) NaBH4no reaction

2) H3O+

Page 36: Alcohols Biological Activity Nomenclature Preparation Reactions

NaBH4 is More Selective

OH

O O1) NaBH4

2) H3O+

OH O

OH

1) LiAlH4

2) H3O+ OH

OH

Page 37: Alcohols Biological Activity Nomenclature Preparation Reactions

Oxymercuration HydrationMarkovnikov

OH

H2) NaBH4

THF/H2O1) Hg(OAc)2 in

Page 38: Alcohols Biological Activity Nomenclature Preparation Reactions

Hydroboration HydrationAnti-Markovnikov

3H OH

2) H2O2, NaOH

1) BH3-THF3

Page 39: Alcohols Biological Activity Nomenclature Preparation Reactions

Organometallic ChemistryGrignard Reaction

CH3 Br + Mg MgBrCH3

CH3 MgBr" "

Grignard Reagent

excellent nucleophilevery strong base

Page 40: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents React With Ketones to form tertiary alcohols

O

CH3MgBr in ether1)

2) H3O+

CH3HOCH3

CH3MgBrO

H3O+

+ MgBrOH

a 3 alcoholo

Page 41: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents React With Aldehydes to form secondary alcohols

O

H

1)MgBr

in ether

2) H3O+

OH

H

Page 42: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents React With Formaldehyde to form primary

alcohols

CH2Br

Mg, ether,

CH2 MgBr

C

O

HH

CH2CH2O MgBr

H3O+

CH2CH2OH

formaldehyde

Page 43: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents open Epoxides

+ enant.

RCO3HO

CH3MgBr

MgBrO

CH3H3O+

OH

CH3

Page 44: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents react (twice) with Esters to form 3o Alcohols

C

O

OCH3 1) 2 CH3MgBr

2) H3O+

C

OH

CH3CH3

C

O

CH3

OCH3

C

O

CH3

ketone

1) CH3MgBr

2) H3O+

CH3 2nd eq.

(more reactive than ester)

Page 45: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Summary

R MgXO R'

R''

+

epoxide

H3O+ workup

2 MgXR + C O

RO

R'H3O+ workup

R

OH

ester

C OH

R'

R

R + ROH

Page 46: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Summary

R MgX C O

H

H

+

+

H

R'

OCMgXR

+

R''

R'

OCMgXR

H3O+ workup

H3O+ workup

H3O+ workup

C OH

H

R

H

H

R

R'

OHC

R''

R

R'

OHC

formaldehyde

aldehyde

ketone

Page 47: Alcohols Biological Activity Nomenclature Preparation Reactions

Grignard Reagents are exceptionally strong bases

CH3CH2CH2MgBr +

H2O

CH3OH

CH3CO2H

HC CH

CH3NH2

CH3CH2CH3

Page 48: Alcohols Biological Activity Nomenclature Preparation Reactions

An Effective Use of the BasicityIsotopic Labeling

CH3

Br2, h

CH3 Br

Mg

ether

CH3

MgBr

D2O

CH3 D

+ MgBrOD

Page 49: Alcohols Biological Activity Nomenclature Preparation Reactions

Synthesis

OH

?

Page 50: Alcohols Biological Activity Nomenclature Preparation Reactions

Retrosynthetic AnalysisOH

?

MgBrBr

Page 51: Alcohols Biological Activity Nomenclature Preparation Reactions

4-Step Synthesis

OH

MgBrBr

Br2, h

Mg in ether

1) HCHO2) H3O+

Page 52: Alcohols Biological Activity Nomenclature Preparation Reactions

Base Catalyzed Ring-Opening of Epoxides

Page 53: Alcohols Biological Activity Nomenclature Preparation Reactions

Base Opens Ring from Unhindered Side

O

NaOCH3 in CH3OH

OH

OCH3

OCH3

O Na

OCH3H

regenerates base catalyst

Page 54: Alcohols Biological Activity Nomenclature Preparation Reactions

Acid Catalyzed Ring-OpeningAqueous and in Alcohol

Page 55: Alcohols Biological Activity Nomenclature Preparation Reactions

RegiochemistryRing Opens at More Hindered Site

O

H+, CH3OH

OH

OCH3

O

HCH3OH

OH

OCH3HCH3OH

Page 56: Alcohols Biological Activity Nomenclature Preparation Reactions

Different Regiosomers

Page 57: Alcohols Biological Activity Nomenclature Preparation Reactions

Propose a Mechanism

Br

O

1) NaOCH3

2) heat OCH3OCH2+ NaBr

Page 58: Alcohols Biological Activity Nomenclature Preparation Reactions

2 SN2 steps

Br

O

1) NaOCH3

2) heat OCH3OCH2+ NaBr

CH3O

Br

O

CH3O

Page 59: Alcohols Biological Activity Nomenclature Preparation Reactions

Propose a Mechanism

O

Br

H

(cat.)H3O+

Br

OH

Page 60: Alcohols Biological Activity Nomenclature Preparation Reactions

O

Br

H

(cat.)H3O+

Br

OH

H

Br

O

HH

HOBr

H

O

Br

H

H

H2O

Page 61: Alcohols Biological Activity Nomenclature Preparation Reactions

Ring-Opening is Sterically Controlled

O

CH31) CH3CH2MgBr

2) H3O+ CH3

OHCH2CH3

base opens epoxide at less hindered site

Page 62: Alcohols Biological Activity Nomenclature Preparation Reactions

Synthesize Using Only 1,2, or 3-Carbon Reagents

HC CH

OH

Page 63: Alcohols Biological Activity Nomenclature Preparation Reactions

Retrosynthesis

OHO

+

MgBr Br

HC CH

CH3X

CH3X reduce

HBr

Mg