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Membrane composition changes under salt stress. Genomic synteny of CcI3 to CcI6, Thr , and BMG5.23. RNA sequencing based differential gene expression analysis in CcI3 exposed to salt and osmotic stress . Trehalose biosynthesis is involved in the early response to salinity . Results. - PowerPoint PPT Presentation
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RESEARCH POSTER PRESENTATION DESIGN © 2012
www.PosterPresentations.com
A 24-well growth assay was used to determine salt tolerance levels for Frankia strains.
Introduction
References Material and Methods
Results Results
ConclusionThese preliminary results are uncovering the mechanisms of salt stress tolerance in Frankia
Acknowledgement
Ornithine Biosynthesis is up regulated under salt stress
Salinization of soils and groundwater is a serious problem causing drastic reduction in agricultural production. Actinorhizal plants form a symbiotic association with the actinobacteria, Frankia, and are able to tolerate a variety of abiotic stresses including salt stress. Among the actinorhizal plants, some trees of the genus Casuarina have been shown to grow well under these conditions. The bacterial partner, Frankia, of the actinorhizal symbiosis plays a role in the ability of these plants to survive under harsh conditions. The aim of this study was to identify salt-tolerant Frankia strains and to determine the genes responsible for the molecular mechanisms of salt stress tolerance.
Rediet OSHONE1, Mariama NGOM2,3,5, Nathalie DIAGNE3,5, Diegane DIOUF3,5, Valérie HOCHER4,5, Mame Oureye SY2,5, Laurent LAPLAZE4,5, Antony CHAMPION3,4,5, and Louis S. TISA1
1. University of New Hampshire, USA 2. Laboratoire Campus de Biotechnologie Végétale, Faculté des Sciences & Techniques, Université Cheikh Anta Diop (UCAD), Dakar, Sénégal 3. Laboratoire Commun de Microbiologie IRD/ISRA/UCAD, Dakar, Sénégal 4. Equipe Rhizogenèse, UMR DIADE, IRD, Montpellier, France 5. Laboratoire mixte international Adaptation des Plantes et microorganismes associés aux Stress Environnementaux (LAPSE), Dakar, Sénégal
Identification and Molecular Characterization of Salt Stress Tolerance in Frankia Isolates from Casuarina Plants
COG category CcI6 CcI3 BMG5.23 Thr
Amino acid transport and metabolism 219 218 215 218
Carbohydrate transport and metabolism 133 132 130 135
Cell cycle control, cell division, chromosome partitioning 33 30 34 34
Cell motility 1 1 1 1
Cell wall/membrane/envelope biogenesis 142 139 143 134
Chromatin structure and dynamics 1 1 1 1
Coenzyme transport and metabolism 146 150 141 150
Defense mechanisms 41 39 35 39
Energy production and conversion 201 203 197 204
Function unknown 186 177 188 185
General function prediction only 378 369 365 366
Inorganic ion transport and metabolism 116 118 111 117
Intracellular trafficking, secretion, and vesicular transport 27 28 26 30
Lipid transport and metabolism 159 157 153 166
Nucleotide transport and metabolism 82 85 78 83
Posttranslational modification, protein turnover, chaperones 102 94 98 99
Replication, recombination and repair 180 212 183 169
RNA processing and modification 1 1 1 1
Secondary metabolites biosynthesis, transport and catabolism 113 105 112 116
Signal transduction mechanisms 147 145 147 147
Transcription 240 227 236 234
Translation, ribosomal structure and biogenesis 156 150 151 152
Not in COGs 2483 2183 2379 2406
Membrane composition changes under salt stress
RNA sequencing based differential gene expression analysis in CcI3 exposed to salt and
osmotic stress
Genomic synteny of CcI3 to CcI6, Thr, and BMG5.23CcI3 identified as the most salt sensitive strain, while Allo2, BMG5.23, CcI6, and CeD are salt tolerant
Trehalose biosynthesis is involved in the early response to salinity
Aldehyde detoxification is important in salt stress tolerance
RNA sequencing was performed in triplicate for cells under salt and osmotic stress.
The genomes of salt tolerant strains were sequenced and compared to the genome of the salt sensitive strain.
Quantitative PCR was performed on a sub set of the genes to confirm results of the RNA seq analysis.
Amino acid analysis was used to determine changes in the amino acid profile under salt stress.
A 24 well plate growth assay 2
Analysis of homologous coding sequences
Functional category comparison
Salt sensitive strain shows drastic change in amino acid profile under
stress
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pH homeostasis and Phospohate uptake are
important under salt stress
1. Benson DR and Silvester WB 1993 Biology of Frankia strains,actinomycete symbionts of actinorhizal plants
2. Furnholm T et al. 2012. Development of a semi-high-throughput growth assay for filamentous actinobacteria Frankia. Arch. Microbiol. 194 13–20
3. Hurst et al. 2014. Draft genome sequence of Frankia sp. Strain Thr. genomeA
4. Ghodhbane-Gtari F. et al. 2013 Draft Genome Sequence of Frankia sp. strain BMG5.23 genomeA
5. Mansour et al.2014. Draft genome sequence of Frankia sp. Strain CcI6. 2(1): e01205-13
6. Oshone R et al. 2013. Effect of salt stress on the physiology of Frankia sp. strain CcI6. J. Biosci. 38:699–702
7. Rengasamy P 2006 World salinization with emphasis on Australia. J. Exp. Bot. 57 1017–1023
This research is supported in part by Hatch NH585, JGI 2012 CSP585, and by the College of Life Sciences and Agriculture at the University of New Hampshire, Durham. Travel support was obtained from the MCBS department, Graduate School, and the Zsigray Fund.