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Journal of Applied Bacteriology 1982, 52, 201-207
Glutamate as a differential nitrogen source for thecharacterization of acetylene-reducing Rhizobium strains
500 6
904/06/81
T. KANESHIRO & M.A. KURTZMAN Northern Regional Research Center,Agricultural Research, Science and Education Administration, US Department oj Agriculture,1815 North University Street, Peoria, Illinois 61604, USA
Received 8 January 1981 and accepted 1 June 1981
KA ESHIRO, T. & KURTZMAN, M.A. 1982. Glutamate as a differential nitrogen sourcefor the characterization of acetylene-reducing Rhizobium strains. Journal of AppliedBacteriology 52,201-207.
A majority (36 of 44) of Rhizobium japonicum strains tested reduced acetyleneasymbiotically when grown on an agar medium containing 0'1% (w/v) L-glutamateas a sole nitrogen (N) source. Glutamate as N source led to pinpoint colonies anduniform glutamine synthetase activity of three selected, slow-growing acetylenereducing strains (R. japonicum L-259 and 110 and a cowpea-type Rhizobium 32H 1).The three test strains were characterized further by antibiotic resistance, colony type,cellular morphology, and differential growth on different sources. The evidencesuggests that, in an agar medium, glutamate creates a growth condition leading toacetylene reduction activity, pinpoint colonies and pleomorphism.
Dinitrogen (N 2) fixation by slow-growingrhizobia in liquid (Evans & Keister 1976) andagar-surface (Kaneshiro et ai. 1980) cultures ismeasured conveniently by means of the acetylenereduction assay. Many slow-growing rhizobia,however, do not reduce acetylene (Kaneshiroet at. 1978); therefore, existing taxonomic criteriaare not adequate to distinguish acetylene-reducing (AR ) and non-reducing (AR -) strains.Rhizobium strains are generally identified by theirintrinsic resistance to specific antibiotics (Elkan1971; Josey et at. 1979; Pain 1979).
In contrast to fast-growing rhizobia (Werner& Berghauser 1976), glutamate is taken uprapidly and efficiently by slow-growingRhizobium japonicum strains (USDA-BeltsvilleStrains 83 and 85). Consequently, glutamate hasbeen evaluated as a N source capable of elicitingAR + activity in 46 slow-growing rhizobia. Inliquid cultures, AR + strains appear to growunder micro-aerophilic conditions and to reduceacetylene in the presence of L-glutamate (Keister& Ranga Rao 1977). A preliminary study of AR +
0021-8847/82/04OO-D20 1 $02.00© 1982 The Society for Applied Bacteriology
strains (NRRL L-22, L259, L-302, L-311, andNitragin 32H1) further indicated that aerobicgrowth as measured by turbidity could be morereadily limited by L-glutamate as a N sourcerather than by either gluconate as a carbon (C)source or yeast extract as a vitamin source.
Pankhurst & Craig (1978) have shown thatcells of the cowpea-type strain, 32H 1, grown ina soft layer of agar containing glutamine, reduceacetylene and display pleomorphism similar tothat of symbiotic bacteroid-cells. The authorshave found that surface-grown cultures expressAR + activity more consistently than do liquidcultures. In addition, surface growth permitsobservation of colony morphology and simultaneous performance of physiological and taxonomic tests. Accordingly, this report describes analternative procedure to characterize AR + agarcultures and a comparison of 32H 1 with R.japonicum strains. In place of glutamine,glutamate is shown to be a stable, effective Nsource for the agar-surface growth of AR +
rhizobia. The AR and AR - test strains havebeen further characterized by their antibioticresistance and asymbiotic growth on three different N sources to ascertain any correlation amongAR + strains.
Purchased by U. . Dept.Agriculture for Official U
202
Materials and Methods
T. Kaneshiro and M. A. Kurtzman
CHARACTERIZATION OF STRAINS
STRAINS
NRRL strains designated by the prefix L(Kaneshiro et al. 1978) were obtained from L. K.Nakamura (Agricultural Research ServiceCulture Collection, Peoria, Illinois 61604). Acowpea-type strain, Nitragin 32H 1, was kindlyprovided by J. C. Burton (Nitragin Co.,Milwaukee, Wisconsin 53209). The USDABeltsville strain 110 (Keyser & Weber 1979) wasprovided by D.F. Weber (Beltsville AgriculturalResearch Center, USDA-Beltsville CultureCollection, Beltsville, Maryland 20705).
GL UT AMATE-MAN NITOL-GL UCON ATE(GMG) MEDIUM
The GMG growth medium, adjusted to pH6,65, consisted of (g/l): L-glutamic acid (neutralized with NaOH after weighing) 1; potassium Dgluconate 10; D-mannitol 3; KH 2P04 6;MgS04 "7H 2 0 0·2; CaCI2 "2H 20 0·08; agar 15;and 20 ml of (Fe-Mo) citrate solution. The(Fe-Mo) citrate solution contained 33·5 mgFeC6 H s0 7 " 5H 20and 7 mg Na 2 Mo04 " 2H 20/20 ml and was adjusted to a slighty acidic pHwith citric acid for adequate refrigerated storage.For assay of acetylene reduction, the GMGmedium contained 11 g agar/I.
OTHER MEDIA
Agar slant cultures of rhizobia were maintainedon a modified (Evans & Keister 1976) yeastextract-mannitol-soil extract (YMS) medium atpH 6·7 containing (g/l): yeast extract 1; mannitol5; potassium gluconate 5; agar 16; and a 20%(v/v) soil extract solution (YMGS). Generally,mannitol and gluconate are considered effectiveC substrates for the multiple, degradative metabolism and growth displayed by many types ofrhizobia (Arias et at. 1979; Keele et at. 1970;Kuykendall & Elkan 1976).
Maintenance cultures were transferred to aliquid medium (Kaneshiro et at. 1978) containing(g/l): L-glutamic acid 1; mannitol 5; potassiumgluconate 5; KH 2 P04 3; and yeast extract 0·3.Minor mineral salts were added in amountssimilar to the GMG medium. The liquid cultureswere incubated aerobically for 2-5 d at 25°C ona rotary shaker (approximately 200 rev/min) andwere subsequently left unshaken for up to 3 days.
Static liquid cultures of three AR + test strainsand eight AR - strains were diluted serially in0'85% (w/v) NaCI to yield about 50-700 colonyforming units (cfu counted by a Biotran IIautomated colony counter, New BrunswickScientific Co.) per YMGS plate and spread overagar media containing various Nand C combinations. The final concentrations (g/l) of the variousNand C sources for the detection of agar-surfacegrowth were: glutamic acid 1; mannitol 3;potassium gluconate 10; casamino acids 1·5; andyeast extract 0·3. With the exception of YMGS,the mineral salts for all media were the same asin the GMG medium. After 5-10 d incubationat 28°C, colony characteristics, cellular morphology, and cfu were tabulated to assessphenotypes.
Antibiotic sensitivity of cultures (estimated tocontain 1-3 x 105 cfu on each plate) wasmeasured on YMGS medium by using 7-mmdiameter antibiotic discs (Difco, Detroit,Michigan). Concentrations per disc were:kanamycin 10 j1g; neomycin 10 j1g; penicillin G10 units; polymyxin B 100 units; streptomycin10 j1g; and tetracycline 10 j1g. After 4-8 d incubation, the lethal or inhibited growth diameters(minus the 7 mm discs) were measured (mm), butare tabulated here as either sensitive (s) orresistant (r) to the specific antibiotic.
GLUTAMINE SY THETASE (EC 6.3.1.2)ASSAY
Agar-surface cultures, grown aerobically in flatbottles on either VMS or GMG medium for 4 dat 28°C, were suspended in 1% (w/v) KCI solutionand centrifuged at 4°C. The packed cells weresuspended in a pH 7·0 buffered mixture (15%cellular matter by wet weight) at 4°C containing10 mmoljl imidazolechloride, 1 mmoljl MnCI 2 ,
and 1 mmol/l mercaptoethanol (Shapiro & Stadtman 1970). Cell extracts (1-2'5 ml) were preparedby ultrasonic disruption (Branson, model S-llO)for a total of 4 min in 30-s bursts. Cellular debriswas then removed by centrifugation for 8 min at12000g, and protein in cell extracts was determined colorimetrically by the method of Lowryet at. (1951). The forward, biosynthetic activityof glutamine synthetase was measured byhydroxamate produced from glutamate andhydroxylamine in the presence of adenosine
Glutamate for rhizobial growth 203
Table 1. Growth media and antibiotic resistance of 11 Rhizobium strains in comparison to their acetylenereducing activity
RRL strain number {USDA- Growth on medium* Antibiotic resistance (r)tBeltsville synonym; Rhizobiumsp. or original host-plant) YMGSt CA GMG Km m Pen G Pm B Str Tet
AR + strains§(32H 1; Crotalaria paulina )** + pp*L-259 (26; R. japonicum) ac pp pp(11 0; R. japonicum) + pp
AR - strainsL-21 (3037; Crotalaria striata) ac pp pp sL-238 (3; R. japonicum) + rL-242 (7; R. japonicum) + sL-245 (10; R.japonicum) + sL-246 (11; R. japonicum) pp pp pp sL-281 (51; R.japonicum) + rL-335 (3275; Vigna sinensis) + rL-341 (3298; Vigna
sesquipedalis) ac pp pp
* Growth characteristics expressed as positive (+); sparse (_); negative (- ); positive with slight acid formationto bromothymol blue indicator (ac); or positive but pinpoint colonies (pp).
t Abbreviations for media: yeast extract-mannitol-gluconate-soil extract (YMGS); casamino acids minimal(CA); glutamate-mannitol-giuconate medium (GMG).
t Sensitive (s) strains gave 5-35-mm inhibition zone. Abbreviations for antibiotics: kanamycin (Km); neomycinm); penicillin G (Pen G); polymyxin B (Pm B); streptomycin (Str); tetracycline (Tet).§ Acetylene-reducing (AR +) and non-reducing (AR -) strains after aerobic growth on both CA and GMG media... itragin Co. strain.
triphosphate at pH 7·15 and 3rC (Bender et ai.1977; Bergersen & Turner 1978; Ludwig 1978).Reverse y-glutamyl transferase activity of cellextracts was measured at pH 7·0 (Ludwig 1978)and 37°C as described by Shapiro & Stadtman(1970); relative adenylylation was estimated fromthe ratio of y-glutamyl transferase activities inthe absence and presence of 60 mmoljl Mg2 +.
ACETYLE E REDUCTIO ASSA Y A D
TOTAL CELLULAR PROTEI
Surface cultures were grown aerobically (5'5 mlof agar media inoculated with 0·3 ml of liquidcultures) inside cotton plugged serum vials of20·5 ml total capacity. After 3 d incubation at28°C, the vials were sealed with silicone rubbercaps, flushed with argon, and then filled with 0·1atm acetylene-0'9 atm argon. After further microaerobic incubation for 4 d, ethylene formed inthe 15 ml gas phase was measured by gaschromatography over a Poropak R column(Burris 1974). This procedure (Kaneshiro et at.1980) allowed analysis of AR + cultures within7 d and without disturbing surface growth. Themicro-aerobic cultures produced ethylene at alinear rate for approximately 3-4 d, after an
initial lag period of about 1 d. The rhizobialcells were then washed off the agar surface with0'85% NaCI and collected by centrifugation todetermine the amount of total cellular proteinper vial. The cellular protein fraction wasmeasured colorimetrically after digestion with1 mol/l NaOH (Kaneshiro ef al. J978).
Results
GLUTAMATE AS SOURCE FOR
DIFFERE TIAL GROWTH
Glutamate or aspartate, which can serve as solesources for three AR Rhizobium strains
(32H 1, L-259 and 110), led to similar numbersof cfu as observed on YMGS plates after 5-10 dof incubation at 28°C (Table 1). Casamino acids,which might also serve as a N source, did notconsistently produce cfu. Supplementation ofcasamino acids with yeast extract (300 mg/l)failed to enhance the growth of strains 32H 1 and110. Even though only three (L-21, L-246 andL-341) of the eight AR - strains grew on theGMG medium, both AR - and AR + strains wereslow growing as pinpoint and discretely roundcolonies. Therefore, all eight AR - strains had to
204 T. Kaneshiro and M. A. Kurtzman
Table 2. Acetylene-reducing activity of 44 Rhizobium japonicum strains onGMG medium
RRL strain
L-243, L-255, L-256, L-259,L-273, L-279, L-287, L-298,L-299, L-302, L-307, L-308
L-241, L-248, L-250, L-251,L-252, L-262, L-264, L-265,L-271, L-272, L-276, L-277,L-278, L-284, L-285, L-286,L-288, L-290, L-291, L-292,L-294, L-297, L-301, L-306
L-238, L-246, L-253, L-281,L-289, L-295, L-296, L-303
USDA-Beltsvillesynonym·
8,20,21,26,41,47, 58, 74, 83,94,115,116
6,13,15,16,17,29, 31, 33, 39,40, 44, 45, 46,54, 55, 56, 59,61,62,63,67,71, 85a, 114
3, 11, 18, 51,60,68,70,111
Acetylene reductionper vial
AR+ (>0'15 Jimol)
AR- (no reduction)
• USDA-Beltsville strains are listed in the same respective order as theNRRL strains.
be identified by their specific failure to reduceacetylene.
A previous survey of 44 R. japonicum strainsgrown on a casamino acids minimal medium(Kaneshiro et al. 1978) indicated that 32 wereAR . On the GMG agar medium, 36 of the 44strains reduced acetylene (Table 2). Strains L-252,L-273, L-285, L-287 and L-291 gave acetylenereducing activities when glutamate, instead ofcasamino acids, was the N source for growth.Strain L-303, which reduced acetylene whengrown on casamino acids, was exceptional inthat it did not reduce acetylene after growth onGMG medium. Thus, the GMG medium appearsto provide better growth conditions prior to assayfor acetylene reduction.
Using strain 32H 1, which grew particularlywell with glutamate as a source (Ludwig 1978),a level of 1-2 gil of glutamate was found to beoptimal (Fig. 1)for the production of both cellularprotein and ethylene (1'6Iimoljmg protein in 4 d).Glutamate concentrations > 2 gil appeared toinhibit ethylene production without inhibitingsignificant growth.
CHARACTERIZATION OF THREE AR +
RHIZOBIA
Morphology
Besides pinpoint colony formation, the threeAR + strains grown on GMG agar showed atendency toward pleomorphism, yielding abundant V-, Y-, and other odd-shaped cells. Pleo-
morphic cells, which grew under microaerophilicconditions in a soft-agar layer (Pankhurst &Craig 1978), displayed acetylene-reducingactivity. It was observed that aerobically growncells of pinpoint colonies were also morphologically variable (Fig. 2b) when examinedby phase-contrast microscopy, in contrast to theuniform rods observed in YMGS cultures (Fig.2a). Because AR - and AR + strains were bothpleomorphic in either GMG or other nutrientdeficient media, pleomorphism derived fromaerobic cultures, by itself, could not differentiatethe two types.
Utilization of C and N sources
Because glutamate promoted aerobic growth(Table 1) and subsequent acetylene reduction,its effect when mixed with gluconate-mannitolC sources was re-evaluated (Table 3). Withoutany source in the medium, a gluconatemannitol combination led to minimal, visiblegrowth and no AR + activity. Glutamate plusone other C source stimulated cellular proteinsynthesis (1'7-2'5 mg per vial) but did not produceconsistently high AR + activity. A combinationof glutamate-mannitol-gluconate gave consistent AR + activity (0'2-1'9 limol ethylenelmgprotein) for all AR strains tested. In anothertrial using 0'1% (wIv) aspartate instead ofglutamate, similar amounts of acetylene werereduced. Casamino acids and yeast extract as Nsources, however, gave cultures with different
Glutamate for rhizobial growth 205
Table 3. Acetylene reduction and total cellular proteinof strains 32H 1, L-259 and 110 after aerobic growth
....J 3·0 3'0 0> on various nitrogen (N) and carbon (C) source0 E combinationsE~
c(I)
Strain(I) 0c ;X-.... 5.- Nand C sourcesCl> ">. 2'0 X ........ 2·a 0 combined in 32HI L-259 110.J::.
'X~xQ; ::> growth medium· [Jimol C 2 H 4 and (mg cellular'0 ~ protein) per vial]c '0::>
C (0'2) (0'1) (0'2)0 I·a Gin-man 0 0 0E ::><t 0 Glu-gln 1·2 (1'7) 0·2 (2-4) 0·5 (2'3)E
<t Glu-man 0·01 (1'9) 0·8 (2'5) 0·1 (2'5)Glu-man-gln 3·1 (1,6) 2·3 (2'0) 0·3 (1-8)
0 CA-man-gln 0·1 (1'5) 3·7 (4'8) 0·1 (l'0)a I-a 2·a 3·a 4'0 5·0 6·a Y-man-gln 0·3 (0'9) 2·1 (2'0) 0·1 (1'0)
Glutamic acid (giL)
Fig. 1. Glutamic acid concentration (wjv, neutralizedwith NaOH) required for strain 32Hl growth (X, mgtotal cellular protein per vial) and acetylene-reducingactivity (0, Jimol ethylene per vial) in a glutamatemannitol-gluconate (GMG) medium.
reducing activities than those from glutamategrown cultures. For example, growth on 0'1%(w/v) yeast extract medium led to decreasedacetylene reduction (0'1-0'3 jlmol/mg protein) bystrains 32H1 and 110, but not by L-259. At ahigher 0'3% yeast extract concentration, strains32H1 and 110 showed no detectable growth in3-4 d, whereas strain L-259 still grew vigorouslyand reduced 2 jlmol acetylene per vial. Apparently, strain L-259 can grow and reduces acety-
• Abbreviation and final concentration (wjv): CA(casamino acids 0'15%); gin (potassium gluconate1%); glu (glutamic acid 0'1%); man (mannitol 0'3%);Y (yeast extract 0'1%).
lene when cultivated on media containing eitherglutamate or the mixed amino acids present incasamino acids. However, there is no explanationfor the low acetylene-reducing activities (maximum of0·5 jlmol per vial) displayed by such AR +
strains of R. japonicum as 110 and L-241 in theGMG medium (Table 2).
Antibiotic resistance
None of the six antibiotics assayed (Table 1)selectively restricted growth of the three AR +
10 pm
Fig. 2. Phase-contrast photomicrographs of aerobic strain 32Hl: (a) rod-shaped cells grown on yeast extractmannitol-gluconate-soil extract agar for 4 d; and (b) pleomorphic cells grown on GMG agar after 18 days. A dropof liquid-suspended cells was solidified on a glass-slide with a melted drop of 2% (w/v) Difco purified agar.
206 T. Kaneshiro and M. A. Kurtzman
strains. The AR + strains and a majority of theeight AR - strains were sensitive to kanamycin,penicillin G and streptomycin; they were resistantto neomycin, polymyxin B and tetracycline.Although an intrinsic resistance to specific antibiotics (e.g. L-246 to streptomycin) might becharacteristic of each strain (Elkan 1971; Joseyet al. 1979), there was no detectable relationshipof resistance to either AR + activity or glutamaterequirement.
Glutamine synthetase activity
Because glutamine synthetase is a crucial enzymefor AR + activity and ammonium ion assimilationby cowpea-type rhizobia (Bergersen & Turner1978), the enzyme levels were also measured incellular extracts of the three strains (Table 4). Incontrast to cells grown on a YMS medium, theGMG-grown strains, 32H1 and 110, containedmore extractable protein per unit wet weightand higher: specific activities (j1mol glutamylhydroxamate/min/mg protein). As expected,glutamine synthetase of strain L-259 was activein both GMG and YMS cultures. In short,glutamate appears to stimulate aerobic AR +
cultures evenly when measured by their glutaminesynthetase activity.
Discussion
The well-known ability of slow-growing rhizobiato form pinpoint colonies was used by Trinick(1980) to distinguish between slow- and fastgrowing strains. In a glutamate medium (GMG),
agar-surface cultures were also slow-growi~g,
produced pinpoint colonies and were active inacetylene reduction (AR +). More AR + cultureswere obtained on GMG (36 of 44 R. japonicumstrains) than on a casamino acids medium;whereas some AR - strains (e.g. L-238, L-242,L-245, L-281 and L-335) failed to grow on GMG.Consequently, it appears that the GMG agarmedium is partly selective for AR + strains.
The GMG agar medium elicited AR growthof R. japonicum (L-259 and 110) cells that weredistinctly pleomorphic, similar to pleomorphic32H 1 cells that were AR + in a soft-agar layer(Pankhurst & Craig 1978). In agreement withKeister & Ranga Rao (1977) and Scott et al.(1979), glutamate-N and gluconate-C in the agarmedium were conducive to AR + activity. Thus,a N-C mixture ofglutamate-mannitol-gluconatecompounds favoured both growth and AR +
activity of the slow growers.Although glutamate inhibits assimilation of
ammonium ions (O'Gara & Shanmugam 1976)by slow-growing rhizobia, there is evidence thatexogenous glutamate inhibits neither AR +
(Keister & Ranga Rao 1977) nor glutaminesynthetase (Brown & Dilworth 1975) activities.Instead, glutamate appears to be a preferred Nsource for growth of 32H1 (Ludwig 1978), andthe formation of biosynthetic glutamine synthetase activity appears to be correlated withnitrogenase activity (Bergersen & Turner 1978).Thepresent study also indicates high biosyntheticglutamine synthetase activity (0'1-0'15 j1moljmin/mg protein) of strains 32H 1, L-259 and 110grown aerobically on agar with exogenous
Table 4. Glutamine synthetase activity of three AR + strains compared after growthon VMS and GMG agar media
Protein Biosyntheticcontent of y-Glutamyl glutamine
Growth cellular extract· transferase synthetase Relativemedium Strain (mg/ml) (Jimoljmin/mg protein) adenylylationt
GMG 32H1 2·8 8·2 0·14 1·7VMS 32H1 0·7 2·1 0·01 2·9GMG L-259 1·8 5·3 0·15 1·8VMS L-259 0·7 4·1 0·13 1·7GMG 110 1·8 7·0 0·10 1·8VMS 110 0·2· 0·8 0·01 1·9
• Cellular extract after sonic disruption and centrifugation. Strain 110 grown onVMS formed a slimy emulsion upon centrifugation, but its cellular debris was separablefrom the extract after sonic disruption.
:.. Ratio of transferase activity in the absence/presence of 60 mmol/l Mg 2 + by aprocedure similar to Bergersen & Turner (1978).
Glutamate for rhizobial growth 207
glutamate. Brown & Dilworth (1975) havesuggested that either glutamine or glutamatesupplied by the plant is assimilated by symbioticrhizobia to allow growth and development ofN 2-fixing capacity in root nodules. Such a systemwould seem amenable to analysis with free-livingAR + cultures on a GMG-type agar medium.
The mention of firms' names or trade productsdoes not imply that they are endorsed orrecommended by the US Department of Agriculture over other firms or similar products notmentioned.
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