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1 Climate change impacts on groundwater storage in the Central Valley, California 1 Sarfaraz Alam 1* , Mekonnen Gebremichael 1 , Ruopu Li 2 , Jeff Dozier 3 , Dennis P. Lettenmaier 4 2 Authors Affiliation: 3 1 Department of Civil and Environmental Engineering, University of California, Los Angeles, 4 California, USA 5 2 Department of Geography and Environmental Resources, Southern Illinois University- 6 Carbondale, Illinois, USA 7 3 Bren School of Environmental Science & Management, University of California, Santa Barbara, 8 California, USA 9 4 Department of Geography, University of California, Los Angeles, California, USA 10 Emails: [email protected] (S. Alam), [email protected] (M. Gebremichael), 11 [email protected] (R. Li), [email protected] (J. Dozier), [email protected] (D. P. 12 Lettenmaier) 13 ORCID: S. Alam 0000-0002-9592-2782; M. Gebremichael 0000-0002-6216-9966; R. Li 14 0000-0003-3500-0273; J. Dozier 0000-0001-8542-431X; D.P. Lettenmaier 0000-0002- 15 0914-0726 16 *Corresponding author: Sarfaraz Alam ([email protected]) 17 18 19 20 21 22 23

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Page 1: 1 Climate change impacts on groundwater storage in the ... · 1 1 Climate change impacts on groundwater storage in the Central Valley, California 2 Sarfaraz Alam1*, Mekonnen Gebremichael1,

1

Climate change impacts on groundwater storage in the Central Valley, California 1

Sarfaraz Alam1*, Mekonnen Gebremichael1, Ruopu Li2, Jeff Dozier3, Dennis P. Lettenmaier4 2

Authors Affiliation: 3

1Department of Civil and Environmental Engineering, University of California, Los Angeles, 4

California, USA 5

2Department of Geography and Environmental Resources, Southern Illinois University-6

Carbondale, Illinois, USA 7

3Bren School of Environmental Science & Management, University of California, Santa Barbara, 8

California, USA 9

4Department of Geography, University of California, Los Angeles, California, USA 10

Emails: [email protected] (S. Alam), [email protected] (M. Gebremichael), 11

[email protected] (R. Li), [email protected] (J. Dozier), [email protected] (D. P. 12

Lettenmaier) 13

ORCID: S. Alam 0000-0002-9592-2782; M. Gebremichael 0000-0002-6216-9966; R. Li 14

0000-0003-3500-0273; J. Dozier 0000-0001-8542-431X; D.P. Lettenmaier 0000-0002-15

0914-0726 16

*Corresponding author: Sarfaraz Alam ([email protected]) 17

18

19

20

21

22

23

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Abstract 24

Groundwater plays a critical supporting role in agricultural production in the California Central 25

Valley (CV). Recent prolonged droughts (notably 2007-2009 and 2012-2016) caused dramatic 26

depletion of groundwater, indicating the susceptibility of the CV’s water supply to climate 27

change. To assess the impact of climate change on groundwater storage in the CV, we combine 28

integrated surface water and groundwater models with climate projections from 20 global 29

climate models and thereby explore the vulnerability of CV groundwater for climate scenarios 30

RCP4.5 and RCP8.5. We find that groundwater has been declining over the past decades (3 31

km3/yr on average during 1950-2009). In the absence of future mitigating measures, this decline 32

will continue, but at higher rate due to climate change (31% and 39% increase in loss rate under 33

RCP4.5 and RCP8.5). The highest loss, more than 80% of the total loss, will occur in the semi-34

arid southern Tulare region. We perform computational experiments to quantify the relative 35

contribution of future crop-water use and headwater inflows to total storage change. Our results 36

show that, absent management changes, continuing declines in future groundwater storage are 37

mainly attributed to ongoing over-use of groundwater. However, changes in the seasonality of 38

streamflow into the CV, as well as (small) changes in annual inflows and increased crop water 39

use in a warmer climate, will add 40-70% to the current average annual groundwater losses, 40

bringing them to about 5 km3/yr. 41

Keywords: groundwater; Central Valley; integrated modeling; water management 42

43

1 Introduction 44

Global warming poses serious threats to water resources, particularly in the Western U.S (Bates 45

et al. 2008; Cohen et al. 2000; Gleick et al. 2000). Climate change can directly or indirectly 46

affect different components of the hydrological cycle; precipitation, snowmelt, and 47

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evapotranspiration are linked to agricultural water supply and demand (Garrote et al. 2015; 48

García-Garizábal et al. 2014). Increases in water demand and decreases in surface water supply 49

caused by a warming climate can negatively affect groundwater storage through increased 50

groundwater exploitation, especially in regions like the Central Valley of California where 51

groundwater is already stressed. 52

The Central Valley (CV) of California is one of the most productive agricultural regions in the 53

world. On average, sources of irrigation water are about equally divided between surface water 54

and groundwater (Li et al. 2018), but during droughts surface water availability is reduced, and 55

the difference is mostly made up by groundwater, along with some reduction in irrigated area to 56

reduce demand. Throughout the CV, groundwater sources relative to surface water sources vary, 57

partially due to the natural north-south precipitation gradients, with groundwater relatively more 58

important to the south. Surface water comes mostly from streams that head in the Sierra Nevada 59

(hereafter referred to as headwater watersheds). Precipitation is highly seasonal, mostly 60

occurring from October through March. Pronounced spatial differences in the amount and timing 61

of surface water supplied from the headwater watersheds arise from generally higher total 62

precipitation to the north and greater winter snowpack storage to the south. To address these 63

differences and the overall semi-arid climate, the CV relies on a complex network of reservoirs 64

and manmade canals to store, import and transfer water, especially to its driest southern portions. 65

In recent decades, a gap has developed between water demand and surface water supply. This 66

gap has been caused by reductions in water available from the Colorado River Basin, a shift from 67

row crops to tree crops with higher water demands, and pervasive drought over much of the last 68

decade. This gap has been met during the 2012-2016 drought mostly by extraction of 69

groundwater, along with some reduction in irrigated area (Xiao et al. 2017). Overexploitation of 70

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groundwater was especially pervasive. Posing a serious threat to the long-term viability of 71

agriculture in the CV, the dropping water tables motivated the California legislature to enact the 72

Sustainable Groundwater Management Act (SGMA), which requires that groundwater use in the 73

CV be brought into balance with recharge (California State Legislature 2014). 74

75

Historically, the area devoted to irrigated agriculture in the CV expanded over the 100-year 76

period from the 1870s to the 1970s, at which point the area under irrigation became roughly 77

stable (Olmstead and Rhode, 2017). However, aside from exceptionally high runoff years, the 78

water balance of the CV has been in deficit (Xiao et al. 2017; Famiglietti 2014; Scanlon et al. 79

2012b), effectively meaning that groundwater is being mined. This situation worsened during 80

two drought periods during the past decade (2007-09 and 2012-16). Using satellite data from the 81

Gravity Recovery and Climate Experiment (GRACE), Famiglietti et al. (2011) estimated that the 82

CV experienced net groundwater depletion during 2003-2010 of about 20 km3. Xiao et al. (2017) 83

estimated cumulative groundwater storage change (ΔGW) using multiple data sources including 84

GRACE data and in situ records and model estimates of the CV’s water balance and estimated a 85

depletion rate of 7.2 ± 1.0 km3/yr from April 2006 to March 2010 and 11.2 km3/yr for the 2012-86

2016 drought. Other relevant studies support similar findings that CV groundwater has been in 87

decline for at least the past 50 years (e.g., Famiglietti et al. 2011; Scanlon et al. 2012a; Chen et 88

al. 2016), with most finding that the imbalance has accelerated over the last decade or so. The 89

loss of groundwater in recent droughts is a key indicator of the susceptibility of the CV 90

groundwater system to climate variability and change, to an extent that has not previously been 91

estimated. 92

93

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We address the question of how the CV groundwater system is likely to respond to climate 94

change over the next century, and how the effect of additional stress that is likely to be placed on 95

the system by warmer climate will compare with the ongoing effects of transitioning crop types, 96

primarily from row to tree crops. Essentially, a warming climate changes the timing and amount 97

of streamflow into the CV, and increased crop-water use results directly and indirectly from 98

warmer temperatures. 99

100

To address these issues, we utilize a suite of global climate model output archived for the Fifth 101

Assessment Report of the Intergovernmental Panel on Climate Change (IPCC) to represent 102

uncertainty in patterns of future climate that will affect both runoff and crop water use. We test 103

projections both for modest global emissions increases (RCP4.5) and a more draconian scenario 104

(RCP 8.5). Compared to previous efforts (e.g. Massoud et al. 2018; Hanson et al. 2012), we use a 105

full suite of climate models and scenarios to better represent current understanding of future 106

uncertainties in the factors that will affect CV groundwater in the coming decades. Starting with 107

climate scenarios from Global Climate Models (GCMs), we downscale to 6 km resolution, and 108

then we use a hydrology model to represent the effects of headwater watersheds in producing 109

streamflow into downstream reservoirs and subsequent releases from reservoirs that produce 110

surface flows into the CV. Finally, we represent the implications of future surface runoff into the 111

CV on groundwater use. In contrast to many past studies, our domain is the entire Sacramento-112

San Joaquin-Tulare lowland and upland domain (SSJT), as described in the next section. 113

114

2 Study area 115

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The study area consists of the entire CV from north of Redding south to the Tulare River basin 116

lowlands, and all the drainages that flow to the CV so defined (see Fig. 1). In total, the study area 117

(160,000 km2) constitutes about one third of the area of California. The CV portion of the 118

domain is nearly flat, contrasting with the high elevation headwater watersheds which are the 119

source of most of the surface water that flows to the CV. Strong elevational precipitation 120

gradients characterize the transition from the valley floor to the mountains, and a subtler 121

precipitation gradient exists from the humid north to the semi-arid south (Bales et al. 2006). 122

Averaged over the domain, more than 85% of the average annual precipitation occurs between 123

October and March. Notwithstanding that headwater basins to the south are more snow-124

dominated than those to the north, northern watersheds generate more than two-thirds of the total 125

annual inflow to the CV. This imbalance has motivated the construction of dams and conveyance 126

structures that transfer water from the north to the south. This complex network of surface 127

storage and conveyance structures (most of the former are in the uplands, and the latter in the 128

CV) control the distribution of surface water throughout domain and throughout the year. The 129

reservoirs store high winter and spring flows and release them during the high-demand summer 130

season, while providing flood protection and environmental services (mostly supplementing 131

summer low flows) as well. There are around 18 major reservoirs located in headwater 132

watersheds (shown in Fig. 1) that regulate flows to the CV. There are five major hydrologic 133

regions (HR) in CV (Brush and Dogrul 2013), specifically Sacramento (SC), San Joaquin (SJ), 134

Tulare (TL), Delta and East-Delta. In this study, we compare groundwater storage changes in 135

three major hydrologic regions, the Sacramento, San Joaquin and Tulare. 136

3 Approach and data 137

3.1 Modeling approach 138

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We used a range of climate model projections and hydrologic and water resources management 139

models to evaluate groundwater storage changes in major hydrologic regions. In general, our 140

headwaters to groundwater modeling framework can be divided into three major components, 141

which include models representing the headwater watershed, headwater reservoir regulation, and 142

valley integrated surface-groundwater. We linked each of the components modeled 143

unidirectionally and forced with different climate projections and scenarios. Such integration of 144

systems of models can effectively estimate potential changes in groundwater due to climate 145

change over the CV (Hanson et al. 2012). The sequence of steps we followed are to (1) identify 146

representative climate models and extract downscaled climate variables; (2) simulate headwater 147

watershed runoff using the Variable Infiltration Capacity (VIC) model (Liang et al. 1994); (3) 148

model headwater reservoir storage and releases using the Central Valley model (CVmod: Van 149

Rheenen et al. 2004); (4) model the integrated surface-groundwater system using the California 150

Central Valley Groundwater-Surface Water Simulation Model (C2VSIM: Brush et al. 2013a); 151

and (5) assess future trends and variability of groundwater for multiple climate scenarios (Fig. 2). 152

153

3.2 Headwaters to groundwater modeling framework 154

The headwater watersheds in our modeling framework are represented by the VIC model - a 155

physically based semi-distributed hydrological model that solves the land surface water and 156

energy budgets and provide outputs at a grid cell level (Liang et al. 1994). VIC has a long history 157

of development and successful application in numerous studies, including previous applications 158

over part or all of the CV system by Van Rheenen et al. (2004), Xiao et al. (2017), and others. 159

For the current study, we use VIC simulations by Pierce et al. (2018) that are available at daily 160

timestep and 1/16th degree spatial resolution for both a historical period (driven by the Livneh et 161

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al. (2015) gridded historical data set) and future period (driven by LOCA downscaled climate 162

projection for 32 climate models by Pierce et al. 2014). We obtained the VIC simulation data 163

from the Cal-Adapt online portal managed by the Geospatial Innovation Facility at University of 164

California, Berkeley. We aggregated VIC-simulated daily runoff to monthly to generate inflows 165

to reservoirs and other CV inflow points. To check that VIC simulated headwater watershed 166

flows with reasonable accuracy we compared annual flow from major watersheds with available 167

unimpaired flow estimates (CDWR 2016). The simulated flow from the model and unimpaired 168

flow are generally in agreement (see Table S1 and Fig. S1 in supplementary information). We 169

then used the headwater inflows as input to the headwater reservoir model (where reservoirs 170

exist) and surface-groundwater model (in headwater watersheds without reservoirs). 171

172

We simulated headwater reservoir operation using the reservoir simulation model CVmod (Van 173

Rheenen et al. 2004). The original version of CVmod simulated reservoir storage in the 174

Sacramento and San Joaquin basins. CVmod operates at a monthly time step. The model takes 175

natural inflows from surrounding headwater basins (observed or simulated by a hydrological 176

model such as VIC) as input and simulates reservoir storage and releases based on operations 177

related to flood control, hydropower production, navigation, instream flow requirement for fish, 178

and water supply demands. We updated the model’s parameters to better match historical storage 179

and release observations. We also extended the model to represent four additional reservoirs in 180

the Tulare basin (Pine Flat, Isabella, Success, and Kaweah Lake), calibrated with historical flows 181

and evaluated performance relative to observed reservoir storage and releases. We ran CVmod 182

using VIC simulated headwater inflows to obtain reservoir release and storage for both historical 183

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and future climate simulations (Fig.1 shows reservoirs considered in this study). Details of model 184

performance are given in Text S2, Table S2 and Fig. S2 of supplementary information. 185

186

We used C2VSIM to simulate CV surface water and groundwater dynamics. C2VSIM was 187

originally developed by CDWR and has a long history of development and applications 188

including use with climate change studies (Brush et al. 2013a; Brush and Dogrul 2013; Dogrul et 189

al. 2016). The model simulates groundwater flow in three layers on finite element grids and 190

dynamically couples with a one-dimensional simulation of land surface hydrologic processes, 191

streamflow, vertical movement in the vadose zone, lake, and flow from adjacent ungauged 192

watersheds (Brush and Dogrul, 2013). The groundwater flow equations are solved at 1392 finite 193

element grids (51,000 km2) and land surface hydrologic processes are computed at 21 water 194

balance subregions - CDWR and the US Bureau of Reclamation have subdivided the CV for 195

purpose of estimating surface water delivery and groundwater use. We used a coarse grid version 196

of the model with element sizes ranging from 5.4 km2 to 87 km2 (average 37 km2). The model 197

estimates water demand given irrigated land use as determined by agricultural management 198

parameters, crop types, water supply from surface water diversions groundwater pumping, and 199

climatic forcing (Dogrul et al. 2016). Brush et.al. (2013b) calibrated C2VSIM for the period 200

1975-2003 to produce a good match between simulated and observed streamflow, groundwater 201

heads, and head differences between wells. C2VSIM as we implemented it runs for the period 202

October 1921 to September 2009 at a monthly time step (see Brush et al. 2013a for details). 203

204

The inputs to C2VSIM include precipitation, crop evapotranspiration (ETc), crop types, surface 205

water diversions, urban water demand and, inflow from surrounding watersheds. To demonstrate 206

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the direct impact of climate change on agriculture and groundwater resources, we set urban and 207

agricultural land use patterns, and irrigation efficiency to 2003 values. However, given that urban 208

water demand is anticipated to increase in the future (Johnson 2009), we applied a 1.2% annual 209

rate of increase in urban water demand, similar to Hanson et al. (2012), from year 2000 through 210

2098. We computed ETc as the product of the crop coefficient (Kc) and reference crop 211

evapotranspiration following Allen et al. (1998). The mean values and seasonal variations in Kc 212

are obtained from Brush et al. (2004) and ITRC (2003). We estimated reference crop 213

evapotranspiration (ETo) using the Penman-Monteith equation applied following Allen et.al. 214

(1998) at 1/16-degree spatial resolution for the study region. This ETo calculation requires air 215

temperature, vapor pressure deficit, relative humidity, solar radiation, and wind speed (Eq 1). We 216

extracted all the required variables from VIC (driven by Livneh et al, 2015 data for the historical 217

period and LOCA climate projections from Pierce et al. 2014) for the future. We temporally 218

aggregated ETo to obtain monthly data from daily time series and extracted the subregion-219

averaged ETo. Twelve major crop types are used by C2VSIM including virtual crops that 220

aggregate multiple actual crops (e.g. grains, orchard, field crops, truck crops). To verify that 221

C2VSIM performed well during the historical simulation driven by the Livneh et al. (2015) data, 222

we compared our groundwater storage change results with previous studies (shown in section 4). 223

𝐸𝑇0 =0.408∆(Rn − G) + 𝛾

900T + 273 𝑒2(𝑒𝑠 − 𝑒𝑎)

∆ + 𝛾(1 + 0.34𝑢2) (1) 224

In equation 1, Rn is net radiation, G is ground heat flux (assumed zero), T is mean daily air 225

temperature at 2 m height (℃), 𝑢2 is wind speed at 2 m height, 𝑒𝑠 is saturation vapor pressure, 𝑒𝑎 226

is actual vapor pressure, Δ is the slope of the saturation vapor pressure curve, and 𝛾 is the 227

psychrometric constant. 228

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Additionally, C2VSIM requires user-defined surface water diversion information along the 229

stream network (shown in Fig. 1). Previous studies of the CV and its contributing watersheds 230

used relatively simple methods to estimate surface water deliveries. For instance, Hanson et al. 231

(2012 and 2005) estimated future diversions based historical analogs (partitioning years into wet 232

and dry periods), Miller et al. (2009) used historic diversion statistics (mean, median). We 233

developed a simple linear programming (LP) model with surface water networks similar to 234

C2VSIM to estimate surface water diversions (Fig. 1 shows the network and diversion locations; 235

a more detailed description of the diversion locations is provided by Brush and Dogrul, 2013). 236

The objective of the LP model is to maximize the surface water delivery under constraints like 237

mass balance, and maximum/minimum instream flow (see Text S3 of supplementary 238

information). We used upstream headwater watershed flows as the upstream boundary to the LP 239

model. We first ran the LP model at a monthly time step for the projection period and then 240

applied the surface water diversion output to C2VSIM. In C2VSIM, surface water deliveries are 241

used first to meet demand; any deficit in surface water supply is then met by pumping 242

groundwater, which implies that maximizing diversions reduces groundwater pumping. 243

244

3.3 Climate models, and crop and hydrologic scenarios 245

To account for the uncertainty associated with future projections from different GCMs, we 246

performed a preliminary analysis to select suitable climate models for this study. We compared 247

the empirical cumulative distribution functions (ECDFs) of mean annual runoff (VIC-simulated 248

annual total runoff averaged over 2006-2099 for the Sacramento, San Joaquin, and Kings Rivers 249

for RCP 8.5) among different combinations of GCMs (for more information refer to Text S4 and 250

Fig. S3 of supplementary information). Based on our comparison we selected 20 GCMs that 251

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capture a range of variability out of the 32 GCMs and archived in the Coupled Model 252

Intercomparison Project phase 5 (CMIP5; the selected GCMs are shown in Table S3 of 253

supplementary information). We considered both RCP 4.5 and RCP 8.5 global emissions 254

scenarios. We first ran integrated chain of models for the historical period (1950-2009), where 255

land use and cropping patterns vary annually (referred to as “Hist” hereafter). Next, we ran the 256

models with historical climate (1950-2009) and assumed fixed (to 2003 levels) agricultural 257

practices and cropping patterns (referred to as “Baseline”). To assess the impact of climate 258

change, we ran the models with future climate (2010-2098) forcing based on projections for 259

RCP4.5 and RCP8.5 (we refer to this simulation as ‘CCR’ hereafter), where we assume fixed (at 260

2003 levels) agricultural practices and cropping pattern. We also conducted scenario analyses to 261

better understand the underlying causes of future climate impact on groundwater storage. We 262

analyzed the simulation results for three future periods: beginning of century (BOC; years 2010-263

2039), mid-century (MOC; years 2040-2069) and end of century (EOC; years 2070-2098). The 264

formulation of scenarios is detailed in sections 3.3.1 and 3.3.2 as well as in Table 1. 265

266

3.3.1 Future crop-water use and headwater inflow change scenarios 267

The amount of groundwater being pumped to meet agricultural demands in CV is essentially a 268

balance between the crop water demand, precipitation and surface water supply from headwater 269

watersheds. Crop evaporative demand increases with temperature, or precisely, with 270

temperature-dependent variables such as the vapor pressure deficit, net radiation, and the slope 271

of the vapor pressure relationship with temperature). Historically, most of the total crop-water 272

demand in the northern part of the CV has been satisfied by precipitation (52.7%) and surface 273

water supply (25.3%), whereas lower precipitation (18.6%) and surface water (24.6%) 274

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availability in the southern part of the domain has resulted in higher groundwater pumping (Li et 275

al. 2018). As the climate continues to change, both demand and supply are expected to change, 276

and the magnitudes of which will vary over regions within the CV depending on climate. To 277

better understand the effect of climate change on groundwater storage, we explored a range of 278

scenarios that quantify ΔGW associated with crop-water use (which is a balance between crop 279

evaporative demand and precipitation) in the CV and surface water supply from headwater 280

watersheds (headwater inflow hereafter). As a proxy for current crop-water use and headwater 281

inflow, we randomly sampled the baseline (1950-2009) historical analysis to generate a set of 282

synthetic time series of monthly data for 30 years. We repeated the random sampling two more 283

times to create 90 years of data (we used same 30 years data for each future period to be 284

consistent in comparing the outputs between the periods). We implemented those 90 years with 285

baseline agricultural management (at 2003 levels). To identify the ΔGW resulting from crop-286

water use versus headwater inflow, we performed two scenario analyses: (1) current crop-water 287

use and future inflows (FI), and (2) current inflows and future crop water use (FC). 288

289

3.3.2 Future headwater inflow volume and seasonality change scenarios 290

Both the volume (of annual inflow to the CV) and inflow timing (seasonality) of headwater 291

inflows are expected to change in the future. The effect of these projected changes on 292

groundwater storage is not well known. To better understand the ΔGW that are likely to be 293

associated with future headwater inflow volume vs seasonality, we conducted two scenario 294

analyses by adjusting the projected inflows. We multiplied the projected headwater inflows 295

(2010-2098) by perturbation ratios between projected inflows and historical inflows following 296

Wang et al. (2011) and Miller et al. (2003). The scenarios are described as follows: 297

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Annual inflow volume adjustment 298

We determined annual perturbation ratios (𝐴𝑐) from the 30-year (1971-2000) historical mean 299

annual inflows (𝑅) and 30-year projected mean annual inflows (𝑅′𝑐) for three future periods 300

(2010-2039, 2040-2069 and 2070-2099). We then multiplied the projected inflows (𝑅′𝑐𝑖𝑗, 𝑐 = 301

2010-2039, 2040-2069 and 2070-2099, i = 1, . . . ,12 for each month, j = 1, . . ,90 years) by these 302

ratios. The future time series (𝑇𝑐𝑖𝑗) are modified to have the same annual means as the historical 303

inflows (1971-2000), but their seasonality is unchanged. 304

𝐴𝑐 =

𝑅

𝑅′𝑐

(2)

𝑇𝑐𝑖𝑗 = 𝐴𝑐 × 𝑅′𝑐𝑖𝑗 (3) 305

The modified inflows corresponding to each GCM were used as input to the integrated chain of 306

models. We refer to this scenario as future seasonality change only or I_SC hereafter. The 307

difference in groundwater estimation relative to the CCR simulation shows the effect of future 308

annual volume (changes) of future inflows. 309

310

Monthly inflow perturbation 311

We also generated headwater inflow time series that keep the projected annual inflow volumes 312

unchanged in the future, with monthly (mean) fractions of mean annual inflows the same as in 313

the historical (1971-2000) period. We determined the mean monthly fractions of annual flows 314

from the 30-year historical period (𝐵𝑖, 𝑖 = 1, … ,12 for each month). We then multiplied the 315

projected annual flows (𝑅′𝑗) by the fractions (𝐵𝑖) to obtain inflow time series (𝐺𝑖𝑗) with the 316

historical seasonality. Accordingly, the projected annual volumes were unchanged. 317

𝐺𝑖𝑗 = 𝐵𝑖 × 𝑅′𝑗 𝑖 = 1, . . ,12; 𝑗 = 1, . . ,90 (4) 318

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The modified inflows were then used as input to the integrated chain of models. This scenario is 319

referred to as annual volume change only or I_AC hereafter. The difference in groundwater 320

estimation relative to the CCR simulation shows the effect of timing (changes) of future inflows. 321

322

3.4 Cropping pattern scenario 323

We quantify the ΔGW that would occur due to a shift from mostly row crops to tree crops 324

(together with future climate). C2VSIM, which is the core of this analysis, has 12 crop categories 325

(pasture, alfalfa, sugar beet, field crop, rice, truck crop, tomato, orchard, grains, vineyard, cotton, 326

citrus-olives). For the scenario analysis, we specified 40% and 60% row crops (classification of 327

row and tree crops obtained from Xiao et al. 2017) to high water consumptive tree crops 328

(orchard). One motivation behind choosing 40% change is from Xiao et al. (2017), who showed 329

that between 2007-2016 there was an average 40% shift from row crops to tree crops, suggesting 330

that much of the change we “project” has already occurred. In our case, we applied the shift 331

relative to the baseline cropping pattern (2003). We ran the models with 40% and 60% crop 332

shifts for all (20) future GCM climate scenarios (referred to hereafter as CS). The difference 333

between the CS and CCR scenarios (ΔGW) is due to a shift from row to tree crops. We use the 334

additional ΔGW estimates from crop-shift scenarios (40% and 60%) to identify percent shift 335

(row to tree crops) at which groundwater change due to crop-shift and climate change (RCP8.5) 336

are equal. 337

338

4 Results 339

4.1 Changes in hydrology 340

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Fig. 3 shows mean annual changes (%) in precipitation (P), headwater inflows (I) and reference 341

evapotranspiration (ETo) for all 20 climate models and scenarios during three future periods 342

(BOC, MOC, and EOC representing beginning, middle, and end of century) compared to the 343

historic climate reference period (1971-2000). Multi-model precipitation estimates over CV have 344

a median annual decrease of -2.2% and -4.4% for RCP4.5 and RCP8.5 respectively near EOC, 345

however the variability of the multi-model estimates is quite high (standard deviations of 8.9% 346

and 15.2% for RCP4.5 and RCP8.5 respectively). On the other hand, temperature increases in the 347

future will increase crop evaporative demands (here we show ETo change as proxy). Climate 348

change will cause ETo over the CV to increase by 6.6 ± 1.5% and 10.5 ± 1.8% over the CV near 349

the end of the century (EOC) for RCP4.5 and RCP8.5 respectively. The rate of ETo increase is 350

higher in RCP8.5 due to continuing increase in temperature, whereas, the rate of increase 351

decreases slightly after mid-century (MOC) in RCP4.5. Additionally, projected changes in 352

temperature and precipitation over the headwater watersheds results in varying impacts on 353

headwater inflows (I). Mean annual inflows have negative trends but high variability especially 354

towards the end of the century, with changes of -4.20% ± 12% and -4.37% ± 19% at MOC; -355

3.59% ±16% and -8.19% ± 23% at EOC for RCP4.5 and RCP8.5 respectively (changes of 356

hydrologic variables shown in Table S4 of supplementary information). 357

358

Headwater inflow changes can be both positive and negative (in contrast to ETo which increases 359

in all models). The variability (standard deviation) of future inflow changes is higher than the 360

median in all cases; the headwater runoff projections range from negative to positive depending 361

on the GCM. Moreover, there is a contrasting trend in the cool season (October through March) 362

versus the warm season (April through September) flows where cool season flows are expected 363

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(in the median) to increase, and warm season flows are expected to decrease. The variability in 364

multi-model estimates increases towards the end of century (percentage changes in seasonal 365

inflows are shown in Fig. 3). The median changes in annual inflows is negative, this is 366

dominated by warm season decreases vs. cool season increases (volumetric changes in inflow are 367

shown in Fig. S4 of supplementary information). To get an idea of multi-model agreement as to 368

the sign of the median change- we calculated the number of concordant minus discordant pairs, 369

divided by the numbers of pairs for annual precipitation, annual and seasonal inflows (shown in 370

Fig. S5 and Fig. S6 of supplementary information). We find that there is little agreement in the 371

annual estimates of inflows (concordance 0.1-0.3) and precipitation (concordance 0.1-0.6, lowest 372

during EOC) among models over the CV. There is, however, greater agreement at the seasonal 373

level of inflow changes (concordance in warm season 0.9-1 and cool season 0.4-0.9). On 374

average, concordance for decreases in inflow during the warm season is higher than for increases 375

in inflow during the cool season. 376

377

At the regional level, changes in precipitation are smaller (in absolute value) in the Sacramento 378

than in the San Joaquin and Tulare, where across-GCM variability is also larger (Fig. 3). 379

Similarly, mean annual runoff decreases in SJ and TL, whereas there is no clear trend in the 380

multi-model median for SC (percent changes in annual volume are higher in TL and SJ than in 381

SC). However, the multi-model median of headwater inflows in all the regions increases during 382

the cool season and decrease during the warm season, with a high degree of concordance in both 383

measures. 384

385

4.2 Historical changes in groundwater storage 386

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Fig. 4 shows the historical (1950-2009) changes in precipitation, headwater inflows, agricultural 387

demand and cumulative simulated changes in groundwater storage (ΔGW hereafter). 388

groundwater storage decreased monotonically during the first half of our historical record (1950-389

1979) with a depletion rate of 4.1 km3/yr. During the latter half (1980-2009), the interannual 390

variability in ΔGW increased due to intermittent wet and dry years (as seen in the precipitation 391

and inflow time series shown in Fig. 3). The long term (1950-2009) historical groundwater 392

depletion rate is around 3.0 km3/yr. For the Baseline scenario (2003 cropping patterns), the 393

simulated cumulative ΔGW rate is -3.1 km3/yr (time series ΔGW shown in Fig. S7 of 394

supplementary information). The Baseline groundwater depletion rate is slightly higher than the 395

historical rate, mainly due to difference in the historical evolution of land-use and cropping 396

patterns; the historical run considers changes (i.e. agricultural area increased monotonically 397

between 1950 through 1975, then became relatively stable) while the Baseline run considers 398

land-use and cropping patterns to be fixed at 2003 levels. 399

400

We compared the simulated ΔGW from C2VSIM with other available estimates. The simulated 401

changes (mean trend) in ΔGW for April 2006 to September 2009 from C2VSIM is -8 km3/yr, 402

compared to -7.9 ± 1.3 km3/yr by Xiao et al. (2017) and -7.8 km3/yr by Scanlon et al. (2012a). 403

GRACE-based estimates include -7.2 ± 1 km3/yr by Xiao et al (2017) and -6.0 km3/yr by 404

Famiglietti et al. (2011) for the period April 2006 to March 2010 which is also close to our 405

simulated estimate of ΔGW. Fig. 4e compares monthly GRACE ΔGW from Xiao et al. (2017) 406

and C2VSIM; it is visually evident that C2VSIM reasonably captures the increasing/decreasing 407

trends. 408

409

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4.3 Climate change impacts on groundwater storage 410

We quantify ΔGW for the projection period (2010-2098) where the forcing comes from 20 411

climate models and 2 RCP scenarios. Fig. 5a shows ΔGW for the entire CV and its major 412

hydrologic regions (ΔGW time-series for each climate model are shown in Fig. S8 of 413

supplementary information). It is visually evident that in both RCP scenarios, the CV is expected 414

to go through a continuous groundwater depletion with higher multi-model variability towards 415

the end of the century. Median ΔGW at the end of the century (2098) is expected to be -373 ± 88 416

km3 for RCP4.5 and -406 ± 116 km3 for RCP8.5. Furthermore, we fit linear regressions and 417

estimated trends in ΔGW over the future periods (Fig. 5b). The long-term (2010-2098) median 418

(over GCMs) trend in ΔGW is -4.1±1.1 km3/yr for RCP4.5 and -4.4±1.4 km3/yr for RCP8.5 419

respectively. These represent median trend increases of 31% and 39% compared to the baseline 420

trend (2003 cropping patterns) for RCP4.5 and RCP8.5 respectively. The rate of depletion and 421

uncertainty is higher during EOC, with a median rate ΔGW of -4.4±1.1 km3/yr (RCP4.5) and -422

4.9±1.4 (RCP8.5) km3/yr, which is equivalent to increases by 40% and 56% increase in ΔGW 423

depletion rate compared to the baseline trends (2003 cropping patterns), respectively. Overall, 424

there will be 40-70% increase (interquartile range of all percent changes) in GW depletion over 425

the entire CV. 426

427

The rate of groundwater decline under future climate change scenarios is not uniform across the 428

CV. The southernmost part (the TL region) will experience higher groundwater declines 429

compared to the central and northern parts (SJ and SC). On average, due to future climate 430

conditions, TL will experience 88% more groundwater decline than either SJ and SC. Separating 431

the results according to the major hydrologic regions of CV, median rates of change in ΔGW in 432

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TL during the projection period are -2.5 ± 0.7 km3/yr (RCP4.5) and -2.5 ± 0.9 km3/yr (RCP8.5), 433

which is equivalent to 26% and 28% increases in ΔGW depletion rate compared to the baseline 434

trends (-2.0 km3/yr) for RCP4.5 and RCP8.5 respectively in TL. The second highest depletion is 435

expected in SJ where long-term rate of ΔGW change are -0.78±0.2 km3/yr (RCP4.5) and -436

0.86±0.3 km3/yr (RCP8.5), which is equivalent to 49% and 65.7% increases in ΔGW depletion 437

rate compared to Baseline (-0.52 km3/yr) for RCP4.5 and RCP8.5 respectively. ΔGW in SC is 438

even smaller, with rate of change in ΔGW is expected to be -0.38±0.11 km3/yr (RCP4.5) and -439

0.48 ± 0.14 km3/yr (RCP8.5), which is an increase in ΔGW depletion rate by 31.3% and 63.5% 440

compared to Baseline (-0.29 km3/yr) for RCP4.5 and RCP8.5 respectively. Groundwater losses 441

(in absolute value) are higher for all regions at the end of century (2070-2098) and higher for 442

RCP8.5 than for RCP4.5. In particular, the median (over GCMs) ΔGW rates will increase by 443

44.4%, 47.1% and 33.3% respectively under RCP4.5, and 80.9%, 53.9% and 47.5% for SC, SJ, 444

and TL, respectively under RCP8.5 at the end of century (regional time series of ΔGW are 445

shown in Fig. S9 of supplementary information). 446

447

4.4 Crop-shift scenario 448

We computed the ΔGW associated with a 40% and 60% shift towards tree crops (see section 3.4) 449

for all climate models (RCP8.5 scenario only). In general, a shift towards tree crops is expected 450

to increase water use requirements, but some of the increased water demand is due to climate 451

change, so we partitioned the climate- and crop change-related components. We found that a 452

40% shift towards tree crops (compared to 2003) causes an additional 0.91 km3/yr groundwater 453

loss, which is equivalent to a 29% increase ΔGW depletion rate compared to the baseline ΔGW 454

rate. Groundwater depletion from the combination of future climate (RCP8.5) and crop-shift 455

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(40%) shows that the relative contributions of climate and crop-shift are about 58% and 42% 456

respectively. However, it is important to note that the 40% shift we considered is with respect to 457

the 2003 cropping pattern. As noted above much of this shift is already in place as of 2018 (see 458

Xiao et al. 2017). For this reason, we also tested a scenario with 60% crop-shift (row to tree), the 459

results of which are that groundwater declines at a rate of (increase relative to baseline) 1.39 460

km3/yr (equivalent to 44% increase in groundwater depletion rate relative to the baseline). We 461

find that a shift of about 56% (compared to year-2003 and without climate change) results in 462

about the same groundwater depletion as does the climate change (RCP 8.5 and baseline 463

cropping pattern-2003) over the entire 2010-2098 period. While the shift towards trees from row 464

crops causes increased groundwater loss in all the major regions, the percentage changes are 465

greatest in SJ (46% and 70% increase for two crop-shift scenarios), and the absolute changes are 466

(by far) the largest in TL (0.55 km3/yr and 0.83 km3/yr for 40% and 60% shifts respectively). 467

468

5 Interpretations and discussions 469

In section 4, we partitioned groundwater change into a climate change contribution and a crop 470

shift contribution. However, there are three main elements of the climate change contribution: 471

1) changes (increases) in crop water demand due to warmer temperatures, 2) the effect (mostly 472

negative) of changes in annual mean inflows to the groundwater, and 3) changes in the 473

seasonality (generally, more flow in winter and less in spring and summer) of the inflows. 474

475

5.1 Role of future crop-water use versus headwater inflow 476

Here, we analyze the effect of changes in the demand (crop-water use) versus supply (surface 477

water inflows) component of the CV water budget. Fig. 6 shows the annual average ΔGW 478

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(additional) between FC (future crop-water use) and FI (future inflow) scenarios for three future 479

periods. We calculate the change associated with future crop-water use (FC) from the difference 480

in CCR (climate change run, which includes the effect of future inflow and crop-water use 481

changes) and FI, whereas the changes due to future inflow are obtained from the difference 482

between the CCR and FC scenarios. Here, we first calculate the difference in groundwater 483

anomalies (between CCR and FI or FC) and determine the median of the multi-model ensembles, 484

then we take the mean of the annual changes for each future period (example shown in Fig. S10 485

of supplementary information). 486

487

In all cases, climate change is expected to increase the groundwater depletion. We find that 488

future crop-water use (change) will have a greater (negative) impact on total groundwater storage 489

in the CV than inflow changes (FI) (predominantly during mid to end of century under RCP8.5); 490

the relative contribution attributable to FC and FI are around 60% and 40% respectively. At a 491

regional level, future crop-water use will have greater (negative) impact in SC (on average 60% 492

of ΔGW), whereas future inflow will have almost equal or greater (on average 50-60% of 493

change) impact (negative) in SJ (except RCP8.5 during EOC), indicating that the SJ is 494

susceptible to both inflow changes and increased crop-water use. However, the changes in 495

groundwater in TL due to future inflow and crop-water use are almost the same at BOC and 496

MOC, and changes (negative) due to crop-water use is higher at EOC (on average the relative 497

contribution is 50%). We find similarities in the relative effect of FI and FC in snow dominated 498

regions (SJ and TL) as opposed to the rain dominated region (SC). Our results also indicate that 499

the interannual variability (hence uncertainty) in all cases is higher for FI, which is due to higher 500

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uncertainty in inflows (as shown in Fig. 3) and relatively less uncertain future increase in crop-501

water use (because temperature 502

rises in all cases). 503

504

5.2 Role of headwater inflow volume and seasonality shifts under future climate 505

Fig. 6 shows the effect of FI and FC, where FI is made up of a combination of changes in annual 506

inflow volumes, and changes in seasonality (Stewart et al. 2004; Regonda et al. 2005). Both 507

effects contribute to ΔGW. To determine the relative magnitude of these effects, we conducted 508

an experiment in which we partitioned the future inflows into seasonal and annual changes 509

(I_SC: seasonality changes in the future, and I_AC: annual volume changes in the future). We 510

then identified the relative differences of I_SC and I_AC from the CCR simulation. Fig. 7 shows 511

the changes in annual average groundwater storage (additional) due to future inflow seasonality 512

(I_SC) and annual volume (I_AC) (higher negative ΔGW means greater groundwater loss) 513

changes. The changes associated with future seasonality are calculated from the difference 514

between CCR and I_AC, whereas the changes due to future volume change are calculated from 515

the difference between CCR and I_SC scenarios. We followed the same process discussed in the 516

previous section (but between CCR and I_SC or I_AC) and compared the changes, shown in Fig. 517

7. We find that ΔGW change attributable to FI is about 80% from future headwater seasonality 518

change and 20% from future annual volume changes. The highest effect of seasonality changes 519

is in SC and SJ. On the other hand, inflow volume change has almost equal effect as seasonality 520

change in the TL region. We note that the effect of changes in natural inflow are mediated to 521

varying degrees by headwater regulation (regulated inflows under different scenarios are shown 522

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in Fig. S11 of supplementary information); this mediation is much greater for seasonality as 523

contrasted with volume changes. 524

525

6 Summary and Conclusions 526

Groundwater plays a critical role in the Central Valley’s agricultural production. The 527

vulnerability of groundwater to climate in the Central Valley is evident from the drastic decline 528

of this resource over the past few decades (Xiao et al. 2017), during which average annual 529

groundwater loss has exceeded 3.0 km3/yr. Given this backdrop, our objective was to assess the 530

impact of future climate change on Central Valley (CV) groundwater storage. Our methodology 531

involves (1) simulation of surface and groundwater in the region using chain of integrated 532

models (C2VSIM, CVmod and VIC), (2) forcing the models with climate model projections 533

under different climate change scenarios (RCP4.5 and RCP8.5), and (3) simulation experiments 534

for cropping pattern change scenario. Based on our results, we conclude that: 535

• Groundwater storage in CV has been declining in recent decades (1950-2009) at an average 536

rate of about 3 km3/yr. This decline in groundwater has resulted from crop water use 537

exceeding natural inflows and groundwater recharge, which has been exacerbated by a 538

combination of a gradually warming climate, and from progressive shifts in crop types that 539

have led higher crop water use. 540

• In the absence of mitigation measures, over the future period (2010-2098), groundwater 541

loss is likely to continue, but at an increased rate. Assuming no (further) change in crop 542

types (relative to 2003), the long-term (2010-2098) rate of groundwater decline in CV 543

under future climate will increase from about 3.0 km3/yr to 4.1 ± 1.1 km3/yr (RCP4.5; 544

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modest greenhouse emission scenario) and 4.4 ± 1.4 km3/yr for RCP8.5 (worst scenario), 545

or 31-39% higher than our base case with 2003 crop patterns. 546

• Groundwater declines are associated both with (1) more groundwater pumping due to 547

increased crop-water demands associated with rising temperatures (and to a lesser extent, 548

reduced precipitation), and (2) reduced surface water supply to CV from headwater 549

watersheds. We find that, absent mitigating measures, the dominant cause of future 550

groundwater declines will be increases in future crop-water (~60% of total change). We 551

note that the projections of headwater inflow changes are much more uncertain (hence 552

projections variable) as they are dominantly associated with precipitation changes, whereas 553

projections of crop water use, which are dominated by temperature changes, are less 554

uncertain. 555

• Groundwater declines, both in the past and projected for the future, are dominated by the 556

Tulare (TL) region, which has accounted for roughly 80 percent of the historical decline. 557

However, the sensitivities of future groundwater loss to climate-related crop water use and 558

inflow changes are not necessarily greatest in the TL basin. 559

California’s new Sustainable Groundwater Management Act (SGMA) mandates that 560

groundwater depletions be brought into balance. Increases in crop water use, and reduced 561

surface water availability associated with climate warming constitute an additional stress on 562

the system; depending on specifics, these additional stresses will increase the current 563

imbalance by one-third to one-half. 564

565

Acknowledgements 566

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The University of California Research Initiatives Award LFR-18-548316 supported this work. 567

We are grateful to Dr. Tariq Kadir and Dr. Emin Dogrul from California’s Department of Water 568

Resources for technical assistance in the use of C2VSIM. We are also grateful to the kind help of 569

Dr. Alan Hamlet of University of Notre Dame for his assistance with CVmod. 570

571

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North America under abusiness as usual'climate change scenario. Climatic Change, 62(1-3):217-661

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VanRheenen NT, Wood AW, Palmer RN, Lettenmaier DP (2004) Potential implications of PCM 663

climate change scenarios for Sacramento–San Joaquin River Basin hydrology and water 664

resources. Climatic change, 62(1-3):257-81. 665

Wang J, Yin H, Chung F (2011) Isolated and integrated effects of sea level rise, seasonal runoff 666

shifts, and annual runoff volume on California’s largest water supply. Journal of hydrology, 667

405(1-2):83-92. 668

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Xiao M, Koppa A, Mekonnen Z, Pagán BR, Zhan S, Cao Q, Aierken A, Lee H, Lettenmaier DP 669

(2017) How much groundwater did California's Central Valley lose during the 2012–2016 670

drought?. Geophysical Research Letters, 44(10):4872-9. 671

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Table 692

Table 1: Summary of the scenarios considered in this study 693

Scenario Description Period

Hist Historical climate and cropping pattern 1950-2009

Baseline Historical climate and cropping pattern for 2003 1950-2009

CCR Climate change run (future forcing + 2003 cropping pattern) for RCP 4.5 and RCP 8.5 2010-2098

FC Future crop-water use (CCR forcing over CV + headwater inflows as Hist + 2003

cropping pattern)

2010-2098

FI Future inflows (Hist forcing over CV + headwater inflows as CCR + 2003 cropping

pattern)

2010-2098

I_SC Headwater inflows seasonality change (seasonality as CCR + mean annual volume as

Hist) + 2003 cropping pattern

2010-2098

I_AC Headwater inflows annual volume change (mean annual volume as CCR + seasonality as

Hist) + 2003 cropping pattern

2010-2098

CS Cropping shift (future forcing + 40% and 60% shift from row to tree crops) 2010-2098

694

695

696

697

698

699

700

701

702

703

704

705

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Figures 706

707

Fig. 1. Map showing Central Valley and its surrounding watersheds (headwater watersheds). The 708

five major hydrologic regions and rivers flowing through them are shown in the map to the right. 709

Headwater watersheds and major reservoirs we represent in the study region are also shown 710

(right). Blue shades indicate elevations of headwater watersheds. 711

712

713

714

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715

Fig. 2. Connectivity and flow of data in our integrated modeling system. Items in the dashed box 716

are the key analysis and outputs. 717

718

719

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721

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723

724

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728

729

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730

Fig. 3. Changes in annual precipitation (Pann), ETo and headwater inflow (Iann) in CV and major 731

regions for three future periods relative to 1971-2000. Seasonal variation in inflows are shown in 732

bottom two rows. (sky-blue: RCP4.5, brown: RCP8.5). Horizontal axis represents three future 733

periods - beginning of century (BOC; 2010-2039); middle of century (MOC; 2040-2069); end of 734

century (EOC; 2070-98). 735

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736

737

Fig. 4. Historical estimate of (a) annual precipitation, (b) annual inflows, (c) agricultural 738

demand, (d) annual cumulative groundwater storage changes (ΔGW). (e) ΔGW comparison 739

between C2VSIM simulation and GRACE estimate at monthly timestep. 740

741

742

743

744

745

746

747

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748

Fig. 5. (a) ΔGW (relative to 2010) in CV and major regions for RCP4.5 (sky-blue) and RCP8.5 749

(brown). The boxplots represent ΔGW obtained by forcing the chain of models with forcing from 750

20 climate models (ΔGW till 2040, 2070 and 2098 reported in the plot). (b) ΔGW rate during 751

three future period. Whiskers represent min (max) value or 1.5 times interquartile range from 752

first (third) quartile, whichever is bigger (smaller). 753

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760

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761

Fig. 6. Additional changes in groundwater storage (annual) due to future crop-water use and 762

inflow under RCP4.5 (a) and RCP8.5 (b) compared to historical (averaged over three future 763

periods). The barplot represent average changes, and the whiskers show the interannual 764

variability (one standard deviation). 765

766

767

768

769

770

771

772

773

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774

Fig. 7. Additional changes in groundwater storage (annual) due to future inflow volume and 775

seasonality changes for RCP4.5 (a) and RCP8.5 (b) compared to historical (averaged over three 776

future periods). The barplot represents average changes, and the whiskers show the interannual 777

variability (standard deviation). 778