19
SUPPLEMENTARY MATERIAL S1 - Literature Search Strategy EMBASE Search Strategy (1980 – July 2011) – 216 results - 1 exp suicide/ or exp suicide gene/ or exp suicide attempt/ - 2 (5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or 5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=title, abstract, subject headings, heading word, drug trade name, original title, device manufacturer, drug manufacturer, device trade name, keyword] - 3 1 and 2 MEDLINE Search Strategy (1960 – July 2011) - 262 results - 1 exp Suicide/ or exp Genes, Transgenic, Suicide/ or exp Suicide, Attempted/ - 2 (5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or 5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=protocol supplementary concept, rare disease supplementary concept, title, original title, abstract, name of substance word, subject heading word, unique identifier] - 3 1 and 2 PsycINFO Search Strategy (1806 – July 2011) – 40 results - 1exp Attempted Suicide/ or exp Suicide/ - 2(5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or 5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=title, abstract, heading word, table of contents, key concepts, original title, tests & measures]

images.nature.com  · Web view[mp=title, abstract, heading word, table of contents, key concepts ... Ohara K, Nagai M, Tsukamoto T, Tani K, Suzuki Y. 5-HT2A receptor gene promoter

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SUPPLEMENTARY MATERIAL

S1 - Literature Search Strategy

EMBASE Search Strategy (1980 – July 2011) – 216 results- 1 exp suicide/ or exp suicide gene/ or exp suicide attempt/- 2 (5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or

5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=title, abstract, subject headings, heading word, drug trade name, original title, device manufacturer, drug manufacturer, device trade name, keyword]

- 3 1 and 2

MEDLINE Search Strategy (1960 – July 2011) - 262 results- 1 exp Suicide/ or exp Genes, Transgenic, Suicide/ or exp Suicide, Attempted/- 2 (5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or

5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=protocol supplementary concept, rare disease supplementary concept, title, original title, abstract, name of substance word, subject heading word, unique identifier]

- 3 1 and 2

PsycINFO Search Strategy (1806 – July 2011) – 40 results- 1exp Attempted Suicide/ or exp Suicide/- 2(5HTR1A or 5HTR1B or 5HTR1D or 5HTR1E or 5HTR1F or 5HTR2A or 5HTR2C or

5HTR5A or 5HTR6 or ABCG1 or ADRA2A or APOE or BDNF or CCK or COMT or CRHR1 or DCP1 or DHCR7 or DRD2 or DRD4 or ESR1 or GABRA3 or GS3KB or HMGCR or LDLR or LPL or MAOA or NTRK2 or SCN8A or SLC6A4 or TPH or TH or VAMP4 or WFS1 or RGS2).mp. [mp=title, abstract, heading word, table of contents, key concepts, original title, tests & measures]

- 3 1 and 2

PubMed Search Strategy (1950 – July 2011) – 19499 results- 1 Search 5HTR1A OR 5HTR1B OR 5HTR1D OR 5HTR1E OR 5HTR1F OR 5HTR2A

OR 5HTR2C OR 5HTR5A OR 5HTR6 OR ABCG1 OR ADRA2A OR apoe OR bdnf OR CCK OR comt OR CRHR1 OR DCP1 OR DHCR7 OR DRD2 OR DRD4 OR ESR1 OR GABRA3 OR GS3KB OR mgbr OR ldlr OR LPL OR maoa OR NTRK2 OR SCN8A OR SLC6A4 OR TPH OR TH OR VAMP4 OR WFS1 OR RGS2

- 2 Search suicide OR suicide attempt OR suicide ideation OR suicide completion OR suicidal

- 3 #1 AND #2

S2 – Modified Newcastle-Ottawa Rating Scale for Study Quality – Study characteristics and quality assessment of the ten most common genetic variants (with at least ten studies relating a genetic variant to suicidal behaviour) associated with suicidal behaviour using a modified Newcastle-Ottawa Rating Scale (studies with at least four stars are included in the meta-analyses) (n=112)

Author Year Design Selection of Controls

Definition of Controls

Age Above 18

Definition of Outcome

Ascertainment of Outcome

Study Quality

Abbar 2001 CC Y Y Y Y Y ******Akar 2010 CC Y Y Y Y Y ******Arango 2003 CC N N N N N *Arias 2001 CC Y Y Y Y Y ******Baca-Garcia 2002 CC Y Y ? Y Y *****Baca-Garcia 2004 CC Y Y Y N Y *****Baca-Garcia 2005 CC Y Y Y Y Y ******Bah 2008 CC N Y Y Y Y *****Baud 2007 CC Y Y Y Y Y ******Bayle 2003 CC Y Y Y N Y *****Bellivier 1998 CC Y Y Y Y Y ******Bellivier 2000 CC Y Y Y Y Y ******Bennett 2000 CC Y Y N Y Y *****Bondy 2000 CC Y Y Y N Y *****Campi-Azevedo 2003 CC Y Y ? Y Y *****Chen 2007 CC N Y Y Y Y *****Chong 2000 CC N Y Y Y Y *****Courtet 2001 CC Y Y Y Y Y ******Courtet 2003 CC Y Y Y Y Y ******Courtet 2004 CC N N Y Y Y ****Courtet 2005 CC Y Y Y Y Y ******Crawford 2000 CC Y Y ? Y Y *****De Lara 2006 CC N Y Y N Y ****De Luca 2005 NCC N N Y N Y **

De Luca 2006 NCC N N Y N Y **De Luca 2007 CC N N Y N Y ***De Luca (A) 2008 CC N Y Y Y Y *****De Luca (B) 2008 NCC N N Y N Y **Du 1999 CC Y Y Y N Y *****Du (A) 2000 CC Y Y Y Y Y ******Du (B) 2000 CC Y Y ? Y Y *****Du 2001 CC Y Y Y Y Y ******Ertugrul 2004 CC N Y Y N Y ****Fanous 2009 NCC N N ? Y Y **Fitch 2001 CC Y Y ? N Y ****Furlong 1998 NCC N N ? N Y *Geijer 2000 CC Y Y Y Y Y ******Gorwood 2000 CC Y Y Y N N ****Ho 2000 CC N Y Y Y Y *****Hong 2001 CC Y Y Y Y Y ******Hranilovic 2003 CC Y Y Y N Y *****Huang 1999 CC Y Y Y Y Y ******Huang 2003 CC Y Y Y Y Y ******Huang 2004 CC Y Y Y N Y *****Huang 2007 CC Y Y N Y Y *****Hwang 2006 CC Y Y Y N Y *****Jernej 2004 CC Y Y Y Y N *****Khait 2005 CC Y Y Y N Y *****Kirov 1999 CC N N Y N N **Koller 2005 CC N Y Y Y Y *****Kunugi 1999 CC Y Y Y N Y *****Lee 2010 CC Y Y Y Y Y ******Lemonde 2003 CC Y Y Y Y Y ******Limosin 2005 CC Y Y Y N Y *****Liu 2006 CC Y Y Y N Y *****Lung 2011 CC Y Y Y N Y *****Mann 2000 CC Y Y Y Y Y ******

Murphy 2011 CC Y Y Y Y Y ******Nedic 2010 CC Y Y Y N Y *****Neves 2008 CC Y Y ? Y Y *****New 2001 CC N Y Y Y Y *****Nielsen 1998 CC Y Y Y Y Y ******Nishigushi 2001 CC Y Y Y Y Y ******Nolan 2000 CC N Y Y Y Y *****Ohara 1998 CC N Y Y Y Y *****Ohtani 2004 CC Y N N N Y ***Ono 2000 CC Y N Y N Y ****Ono 2002 CC Y Y Y N Y *****Ono 2004 CC Y Y Y N Y *****Paik 2000 CC Y Y Y Y Y *****Pivac 2011 CC Y N Y N Y ****Pooley 2003 CC Y Y Y Y Y ******Preuss 2000 CC Y Y Y Y Y ******Preuss 2001 CC Y Y Y N Y *****Rujescu 2001 CC Y Y Y N Y *****Rujescu 2002 CC Y Y Y N Y *****Rujescu 2003 CC Y Y Y Y Y ******Russ 2000 CC N Y Y Y Y *****Saiz 2008 CC Y Y Y Y Y ******Saiz 2011 CC Y Y Y Y Y ******Segal 2006 CC Y Y Y Y Y *****Serretti 2007 CC Y Y Y Y Y ******Serretti 2009 CC Y Y Y Y Y ******Shen 2004 CC Y Y Y Y Y *****Souery 2001 CC Y Y ? Y Y *****Spalletta 2010 CC N N Y N N **Stefulj 2004 CC Y Y Y Y Y ******Stefulj 2005 CC Y Y Y Y Y *****Stefulj 2006 CC Y Y ? Y Y *****Tan 2002 CC N Y ? Y Y ****

Tsai (A) 1999 CC Y N Y Y Y ****Tsai (B) 1999 CC Y Y Y N Y *****Turecki 1999 CC Y Y Y N Y *****Turecki 2001 CC Y Y Y Y Y ******Turecki 2003 CC Y Y ? Y Y *****Vaquero-Lorenzo 2008 CC Y N Y Y Y *****Viana 2006 CC N Y Y Y Y *****Videtic 2009 CC N Y Y Y N ****Vincze 2008 CC Y Y Y Y Y *****Wang 2009 N N N Y Y Y ***Wasserman 2006 N N N Y Y Y ***Yoon 2008 CC Y Y Y Y Y ******Yoon 2009 CC Y Y Y Y Y ******Zai 2011 CC N N ? N Y **Zalsman 2001 CC Y Y N Y Y *****Zalsman 2005 NCC Y Y N Y Y ****Zalsman 2006 CC Y Y Y N Y *****Zalsman 2008 CC Y Y Y Y Y ******Zalsman 2011 CC Y N N Y Y ****Zhang 1997 CC Y Y Y Y Y ******Zhang 2008 CC N Y Y N Y ****Zouk 2007 CC Y Y Y Y Y ******

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19. Courtet P, Buresi C, Abbar M, Baud P, Boulenger JP, Castelnau D, et al. No association between non-violent suicidal behavior and the serotonin transporter promoter polymorphism. Am J Med Genet B Neuropsychiatr Genet. 2003;116B(1):72-6.20. Courtet P, Picot MC, Bellivier F, Torres S, Jollant F, Michelon C, et al. Serotonin transporter gene may be involved in short-term risk of subsequent suicide attempts. Biol Psychiatry. 2004;55(1):46-51.21. Courtet P, Jollant F, Buresi C, Castelnau D, Mouthon D, Malafosse A. The monoamine oxidase A gene may influence the means used in suicide attempts. Psychiatr Genet. 2005;15(3):189-93.22. Crawford J, Sutherland GR, Goldney RD. No evidence for association of 5-HT2A receptor polymorphism with suicide. Am J Med Genet. 2000;96(6):879-80.23. Lopez de Lara C, Dumais A, Rouleau G, Lesage A, Dumont M, Chawky N, et al. STin2 variant and family history of suicide as significant predictors of suicide completion in major depression. Biol Psychiatry. 2006;59(2):114-20. Epub 2005 Aug 25.24. De Luca V, Tharmalingam S, Sicard T, Kennedy JL. Gene-gene interaction between MAOA and COMT in suicidal behavior. Neurosci Lett. 2005;383(1-2):151-4. Epub 2005/06/07.25. De Luca V, Tharmalingam S, Muller DJ, Wong G, de Bartolomeis A, Kennedy JL. Gene-gene interaction between MAOA and COMT in suicidal behavior: analysis in schizophrenia. Brain research. 2006;1097(1):26-30. Epub 2006/05/27.26. De Luca V, Likhodi O, Kennedy JL, Wong AH. Differential expression and parent-of-origin effect of the 5-HT2A receptor gene C102T polymorphism: analysis of suicidality in schizophrenia and bipolar disorder. Am J Med Genet B Neuropsychiatr Genet. 2007;144B(3):370-4.27. De Luca V, Tharmaligam S, Strauss J, Kennedy JL. 5-HT2C receptor and MAO-A interaction analysis: no association with suicidal behaviour in bipolar patients. European archives of psychiatry and clinical neuroscience. 2008;258(7):428-33. Epub 2008/05/28.28. De Luca V, Strauss J, Kennedy JL. Power based association analysis (PBAT) of serotonergic and noradrenergic polymorphisms in bipolar patients with suicidal behaviour. Prog Neuropsychopharmacol Biol Psychiatry. 2008;32(1):197-203. Epub 2007 Aug 19.29. Du L, Faludi G, Palkovits M, Demeter E, Bakish D, Lapierre YD, et al. Frequency of long allele in serotonin transporter gene is increased in depressed suicide victims. Biol Psychiatry. 1999;46(2):196-201.30. Du L, Bakish D, Lapierre YD, Ravindran AV, Hrdina PD. Association of polymorphism of serotonin 2A receptor gene with suicidal ideation in major depressive disorder. Am J Med Genet. 2000;96(1):56-60.31. Du L, Faludi G, Palkovits M, Bakish D, Hrdina PD. Tryptophan hydroxylase gene 218A/C polymorphism is not associated with depressed suicide. Int J Neuropsychopharmacol. 2000;3(3):215-20.32. Du L, Bakish D, Hrdina PD. Tryptophan hydroxylase gene 218A/C polymorphism is associated with somatic anxiety in major depressive disorder. J Affect Disord. 2001;65(1):37-44.33. Ertugrul A, Kennedy JL, Masellis M, Basile VS, Jayathilake K, Meltzer HY. No association of the T102C polymorphism of the serotonin 2A receptor gene (HTR2A) with suicidality in schizophrenia. Schizophr Res. 2004;69(2-3):301-5.34. Fanous AH, Chen X, Wang X, Amdur R, O'Neill FA, Walsh D, et al. Genetic variation in the serotonin 2A receptor and suicidal ideation in a sample of 270 Irish high-density schizophrenia families. Am J Med Genet B Neuropsychiatr Genet. 2009;150B(3):411-7.35. Fitch D, Lesage A, Seguin M, Trousignant M, Bankelfat C, Rouleau GA, et al. Suicide and the serotonin transporter gene. Mol Psychiatry. 2001;6(2):127-8.

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S3 – Plots of Square root (Sample Size) versus Precision for SLC6A4 Polymorphism (A) and TPH rs1800532 (B)– These plots were used to identify significant variation in studies that may have existed after meeting inclusion criteria. Studies greater than two standard deviations from the trendline were excluded from the pooled effect estimate (number of studies excluded=0) due to the fact that they may have significant influence on the accuracy of pooled results.