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Supporting Information
Expedient on-resin modification of a peptide C-terminus through a benzotriazole linker
Anand Selvaraj [a], Hui-Ting Chen[b,c] Adela Ya-Ting Huang[a] and Chai-Lin Kao*[a, c, d]
[a] Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807, Taiwan
[b] Department of Fragrance and Cosmetic Science, Kaohsiung Medical University. Kaohsiung 807, Taiwan
[c] Department of Medical Research, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan
[d] Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan
Content Materials and Methods ........................................................................................................................................................... 1
General procedure for solid phase peptide synthesis ............................................................................................................ 2
General procedure for nucleophilic substitution on benzotriazole resin ............................................................................... 4
General procedure for nucleophilic acyl substitution on peptide .......................................................................................... 7
Preparation of peptide decorated dendrimer ...................................................................................................................... 11
Preparation of cyclic peptide ................................................................................................................................................ 15
General procedure for preparation of elastin peptide ......................................................................................................... 18
NMR Spectra ......................................................................................................................................................................... 22
Chiral HPLC chromatogram ................................................................................................................................................... 38
Electronic Supplementary Material (ESI) for Chemical Science.This journal is © The Royal Society of Chemistry 2017
S1
Materials and Methods
All commercial materials were used without further purification. All solvents were reagent grade or HPLC grade from
Fisher. Diethyl ether, dichloromethane, ethanol, methanol, DMF, and DMSO were obtained from a dry solvent system and
used without further purification. Trifluoroacetic acid (TFA) and isoamyl nitrite were purchased from Acros .
Poly(amidoamine) (PAMAM) dendrimers were purchased from Dendritech. Inc. Triisopropylsilane (TIS), N, N-
diisopropylethylamine (DIPEA), N-methy morpholin (NMM), 4-amino-3-nitrobenzoic acid (ANB), piperidine, 3-
mercaptopropionic acid (MPA) and Tin(II) chloride were purchased from Alfa Aesar. o-(1-Benzotriazol-1-yl)-1,1,3,3-
tetramethyluronium hexafluorophosphate (HBTU) and amino acids were purchased from AK Scientific, Inc. Analytical
thin-layer chromatography was pre-coated and detected at 254 nm by fluorescence detector. Water was purified using a
Millipore MilliQ water purification system. Peptides were synthesized on a Rink amide resin(LS) 100-200 mesh 1% DVB
crosslinking (0.3 mmol/g) from Advanced ChemTech Inc.
NMR spectra were obtained on a Joel 400 MHz and Varian 600 MHz spectrometer. ESI Mass spectra were taken on Bruker
APEII. HRMS (FAB+) were recorded with a JEOL JMS SX/SX 102A four sector mass spectrometer. MALDI-Mass spectra
were recorded from Autoflex III MALDI-TOF system (Bruker Daltonics).
HPLC
Analytical HPLC was carried out in Agilent Model 1100 equipped and performed using a Pyramid C18 column (Nucleodex,
5.0 micron, ɸ4.6 x 250 mm) at a flow rate of 0.5 mL/min with a gradient from 0 to 80% of B in 40 min (eluent A: 0.1%
TFA in H2O, B: 0.1% TFA in CH3CN), 25oC. Analytical injections were monitored at 220 nm.
Gel permeation chromatography (GPC) experiments were carried out in Agilent Model 1100 HPLC system (1100 and
performed using TSK G2000sw column (ɸ7.5 x 300 mm, 10 m size) at a flow rate of 1 mL/min with an isocratic in 20
min (eluent A: 0.1% TFA in H2O), 25oC. Analytical injections were monitored at 214 nm.
Chiral experiments were performed using CHIRACEL OD-H (Chiral Technologies Europe, ɸ4.6 x 250 mm) columns at a
flow rate of 1 mL/min with an isocratic in 30 min (eluent: iPrOH/n-hexane), 25oC. Analytical injections were monitored at
220 nm.
S2
Scheme S1: Synthesis of on resin diaminobenzoic acid linker (Dbz)
The suspension of rink amide resin (0.3 mmol/g loading; 0.1 mmol) in DMF and swelled for 30 min, then the resin was
treated with 20% piperidine stand for 5 min twice and then washed with DMF and coupled to 4-amino-3-nitrobenzoic acid
(ANB) (4 equiv.), HBTU (4 equiv.) and NMM (8 equiv.) in DMF (3 mL). The reaction mixture was allowed to stirred for
2 h. The resin was washed with DCM (3 mL x 3) and DMF (3 mL x 3). The unreacted resin was capped by acetic anhydride.
The supernatant was removed and the resin was washed with DMF (3 mL x 3) and DCM (3 mL x 3). The resulting resin-
bound ANB was bubbled with N2 for 10 min and then carried out with the dihydrate of tin (II) chloride (2.5 M) in the
presence of DBU (2 mmol) in DMF during 6 h at room temperature. The resulting resin-bound o-aminoanilide was filtered
off and then washed DMF (3 mL x 3) and DCM (3 mL x 3). The resin was dried under vacuo and treated with TFA: H2O
(95:5) to afford 95% yield. 1H NMR (400 MHz, DMSO) : δ 7.10 (s, 1H), 7.04 (d, J = 7.2 Hz, 1H), 6.47 (d, J = 8.1 Hz, 1H).
HRMS calcd for C7H10N3O (M+H)+ 152.0824, found 152.0821.
Loading Estimation of the First Amino Acid
The resin was treated with piperidine/DMF (1:4, v/v, 3 mL, 5 min × 3) and the combined deprotection solution (20%
piperidine in DMF) made up to 10 mL with DMF. The solution was diluted 200-fold with DMF and the UV absorbance of
the piperidine-fulvene adduct measured (λ = 301 nm, ε = 7800 M−1cm−1) to estimate the amount of amino acid loaded onto
the resin.
General procedure for solid phase peptide synthesis
The peptide synthesis was carried out using Fmoc-SPPS on rink amide resin (0.3 mmol/g, 0.05 mmol). The resin was treated
with 20% piperidine (5 min x 2) washed with DMF and coupled with 4-amino-3-nitrobenzoic acid (4 equiv.) using HBTU
(4 equiv.), NMM (8 equiv.) in DMF for 1 h. After the resin bound ANB was reduced with tin(II) chloride (2.5 M) in the
presence of DBU (2 mmol) in DMF. The remaining peptide was synthesized on an automated PS3 peptide synthesizer using
Fmoc-Xaa-OH (2 equiv.), NMM (4 equiv.) and HBTU (2 equiv.). The coupling was performed for 60 min and Fmoc-
deprotection was achieved using 20% piperidine (10 min x 2). Coupling reactions were checked by Kaiser test.
S3
General procedure for cyclization and cleavage of the benzotriazole linker
The resin-bound Dbz peptide was washed with DMF (3 mL x 3) and DCM (3 mL x 3), then treated with isoamyl nitrite (10
equiv.) in DMF (4 mL) for 90 min at room temperature. Unreacted isoamylnitrite was washed with DCM. The nucleophilic
(4 equiv.) and DIPEA (8 equiv.) in DMF was bubbled with N2 for 20 min and then immediately added into the activated
peptidyl-resin. The reaction was allowed to shake for 2 h at room temperature. After completion of the reaction, the
supernatant was removed and concentrate under vacuo. The resulting peptide derivative was deprotected with 20%
piperidine in DMF and then TFA cocktail (TFA/TIS/H2O (95:2.5:2.5) or TFA/phenol/water/thioanisole/EDT
(82.5:5:5:5:2.5)). The peptide was precipitated in cold ether and collected by centrifugation. The supernatant was removed
and the residue was dissolved in 30% acetonitrile/H2O and lyophilized to afford pure product without further purification.
Table S1: Optimization of reaction conditions for synthesis of resin bounded benzotriazole (17)
Entry Reagent (equiv.) Acid Solvent Time(h) Conversiona(%)
1 NaNO2(10 equiv.) AcOH DMF 24 40
2 NaNO2(10 equiv.) Acetic acid/Con. HCl DMF 24 15
3 NaNO2(10 equiv.) Con. HCl DMF 24 30
4
5
6
7
Isoamyl nitrite (10 equiv.)
Isoamyl nitrite (5 equiv.)
Isoamyl nitrite (10 equiv.)
Isoamyl nitrite (10 equiv.)
-
-
-
-
DMF
DMF
NMP
DCM
1.5
1.5
3
1.5
99
85
99
99
Reaction conditions: Peptide (25 mg, 0.30 mmol/g) on solid support at room temperature. aConversion to 17
was calculated from the absorbance at 220 nm using HPLC. The entry in bold represents the optimized reaction
conditions for cyclization. Cleavage condition: TFA: H2O (95:5) for 1.5 h at RT.
Synthesis of benzotriazole (17, Bt)
S4
The resin-bound Dbz linker 3 (0.05 mmol) in DMF (4 mL) was added isoamyl nitrite (10 equiv.) at room temperature. The
reaction mixture was allowed to shaken for 90 min at room temperature. The resin was filtered and then washed DCM (3
mL x 3). The benzotriazole was cleaved from resin using TFA: H2O (95:5) to afford the compound 17. The crude mixture
was applied directly to flash chromatography (50-75% EtOAc/ hexanes) to yield 8 mg (92%) as a yellow solid. 1H NMR
(400 MHz, DMSO) : δ 8.44 (s, 1H), 7.90 (dd, J = 16.2, 6.8 Hz, 2H). HRMS calcd for C7H7N4O (M+H)+ 163.0614, found
163.0612.
General procedure for nucleophilic substitution on benzotriazole resin
The resin-bound Dbz 2 (0.05 mmol, 157mg) was coupled with amino acid (4 equiv.) in the presence of HBTU (2 equiv.)
and NMM (4 equiv.) in DMF for 1 h. The resin was washed with DMF (3 mL x 3) and DCM (3 mL x 3). After that resin
bound Dbz amino acid was treated with a solution of isoamylnitrite (10 equiv.) in 4 mL of DMF for 90 min at room
temperature. After washing with DCM (3 mL x 3), the resulting resin was shaken with a mixture of ethanol (10 equiv.) and
DIPEA (8 equiv.) in DCM for 2 h at room temperature. The resin was washed with DCM (3 mL x 3), then the supernatant
was concentrated under vacuo and washed through silica gel pad (ɸmm x 12 mm) to afford pure product.
Fmoc-L-Leu-OEt (6a): Rf = 0.4 (Hexane: Ethyl acetate, 8:2). White solid (18 mg, 91%). 1H NMR (400 MHz, CDCl3) : δ
7.76 (d, J = 7.5 Hz, 2H), 7.59 (dd, J = 6.8, 5.2 Hz, 2H), 7.39 (t, J = 7.5 Hz, 2H), 7.30 (t, J = 7.4
Hz, 2H), 5.20 (d, J = 8.5 Hz, 1H), 4.40-4.38 (m, 3H), 4.24-4.16 (m, 3H), 1.71-1.60 (m, 2H), 1.56
-1.51 (m, 1H), 1.27 (t, J = 7.1 Hz, 3H), 0.95 (dd, J = 6.1, 3.4 Hz, 6H); 13C NMR (100 MHz, CDCl3):
δ 173.3, 156.1, 144.1, 143.9, 141.4, 127.8, 127.1, 125.2, 120.1, 120.1, 67.0, 61.5, 52.6, 47.3, 42.0,
24.8, 23.0, 22.0, 14.3. HRMS (FAB) calcd for C23H28NO4 (M+H)+ 382.2018, found 382.2016.
Fmoc-L-Phe-OEt (6b): Rf = 0.2 (Hexane: Ethyl acetate, 8:2). White solid (19 mg, 90%). 1H NMR (400 MHz, CDCl3): δ
7.78 (d, J = 7.5 Hz, 2H), 7.58-7.55 (m, 2H), 7.40 (t, J = 7.4 Hz, 2H), 7.33-7.25 (m, 5H), 7.12 (d,
J = 6.9 Hz, 2H), 5.30 (d, J = 7.4 Hz, 1H), 4.67-4.64 (m, 1H), 4.46-4.42 (m, 1H), 4.36-4.32 (m,
1H), 4.23-4.15 (m, 3H), 3.12 (t, J = 5.6 Hz, 2H), 1.24 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz,
CDCl3): δ 171.6, 155.6, 144.0, 143.9, 141.4, 135.9, 129.5, 128.7, 127.8, 127.2, 127.2, 125.2,
125.2, 120.1, 120.1, 67.0, 61.7, 54.9, 47.3, 38.4, 14.2. HRMS (FAB) calcd for C26H26NO4
(M+H)+ 416.1862, found 416.1859.
S5
Fmoc-L-Asp(OtBu)-OEt (6c): Rf = 0.5 (Hexane: Ethyl acetate, 8:2). White solid (19 mg, 87%). 1H NMR (400 MHz,
CDCl3): δ 7.76 (d, J = 7.5 Hz, 2H), 7.61-7.59 (m, 2H), 7.39 (t, J = 7.5 Hz, 2H), 7.30 (t, J = 7.4
Hz, 2H), 5.84 (d, J = 8 Hz, 1H), 4.60-4.58 (m, 1H), 4.44-4.40 (m, 1H), 4.36-4.32 (m, 1H), 4.26-
4.21 (m, 3H), 2.97-2.92 (dd, J= 16.8, 4.7 Hz, 1H), 2.80-2.75 (dd, J= 16.8, 4.5 Hz, 1H), 1.45 (s,
9H), 1.27 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 171.0, 170.1, 156.1, 144.0, 143.9,
141.4, 127.8, 127.2, 125.3, 125.2, 120.1, 81.9, 67.3, 61.9, 50.7, 47.2, 37.9, 28.1, 14.2. HRMS
(FAB) calcd for C25H30NO6 (M+H)+ 440.2073, found 440.2074.
Fmoc-L-Gln(Trt)-OEt (6d): Rf = 0.4 (Hexane: Ethyl acetate, 6:4). White solid (27 mg, 86%). 1H NMR (400 MHz, CDCl3):
δ 7.77 (d, J = 7.5 Hz, 2H), 7.61 (d, J = 7.5 Hz, 2H), 7.43-7.38 (m, 2H), 7.34-7.23 (m, 17H), 5.66
(d, J = 8 Hz, 1H), 4.48-4.449 (m, 1H), 4.40-4.33 (m, 2H), 4.25-4.16 (m, 3H), 2.39-2.34 (m, 2H),
2.25-2.21 (m, 1H), 1.96-1.90 (m, 1H), 1.27 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ
172.2, 171.0, 156.5, 144.8, 144.0, 143.8, 141.5, 128.8, 128.1, 127.9, 127.2, 127.2, 125.3, 120.1,
70.8, 67.1, 61.8, 53.8, 47.3, 31.7, 22.8, 14.3. HRMS (FAB) calcd for C41H39N2O5 (M+H)+
639.2859, found 639.2861.
Fmoc-L-His(Trt)-OEt (6e): Rf = 0.3 (Hexane: Ethyl acetate, 6:4). White solid (26 mg, 82%). 1H NMR (400 MHz, CDCl3):
δ 7.75 (d, J = 7.5 Hz, 2H), 7.65-7.61 (m, 2H), 7.43-7.33 (m, 3H), 7.32-7.30 (m, 9H), 7.28-7.27
(m, 2H), 7.13-7.12 (m, 6H), 6.59 (m, 2H), 4.63-4.60 (m,1H), 4.39-4.25 (m, 3H), 4.13-4.06 (m,
2H), 3.10 (m, 2H), 1.17 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 171.7, 156.3, 144.2,
144.1, 142.4, 142.4, 141.3, 141.3, 139.0, 136.5, 129.9, 128.2, 127.2, 125.5, 125.4, 120.0, 119.7,
75.4, 67.3, 61.2, 54.4, 47.3, 29.8, 14.3. HRMS (FAB) calcd for C42H38N3O4 (M+H)+ 648.2862,
found 648.2859.
Fmoc- L-Cys(Trt)-OEt (6f): Rf = 0.5 (Hexane: Ethyl acetate, 8:2). White solid (26 mg, 84%). 1H NMR (400 MHz, CDCl3):
δ 7.77 (d, J = 7.5 Hz, 2H), 7.63 (m, 2H), 7.42-7.38 (m, 8H), 7.33-7.19 (m, 11H), 5.32-5.28 (m,
1H), 4.39-4.26 (m, 3H), 4.21-4.17 (m, 3H), 2.66 (m, 2H), 1.27 (t, J = 7.1 Hz, 3H); 13C NMR
(100 MHz, CDCl3): δ 170.6, 155.7, 144.4, 144.0, 143.9, 141.4, 141.4, 129.6, 128.1, 127.9, 127.8,
127.2, 127.0, 125.3, 125.3, 120.1, 67.2, 61.9, 53.1, 47.2, 29.8, 14.2. HRMS (FAB) calcd for
C39H36NO4S (M+H)+ 614.2365, found 614.2366.
S6
Fmoc-L-Lys(Boc)-OEt (6g): Rf = 0.4 (Hexane: Ethyl acetate, 8:2). White solid (22 mg, 88%). 1H NMR (400 MHz, CDCl3):
δ 7.76 (d, J = 7.4 Hz, 2H), 7.59 (dd, J = 7.1, 2.4 Hz, 2H), 7.38 (t, J = 7.5 Hz, 2H), 7.30 (t, J =
7.5 Hz, 2H), 5.45 (d, J = 7.6 Hz , 1H), 4.59 (m, 1H), 4.40-4.33 (m, 3H), 4.23-4.17 (m, 3H), 3.10
(m, 2H), 1.85-1.82 (m, 1H), 1.71-1.66 (m, 1H), 1.49-1.47 (m, 1H), 1.42 (s, 9H), 1.37-1.35 (m,
2H), 1.26 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 172.6, 156.2, 144.0, 143.9, 141.4,
127.8, 127.2, 125.2, 120.1, 79.2, 67.1, 61.6, 53.9, 47.3, 40.2, 32.3, 29.7, 28.5, 22.4, 14.3. HRMS
(FAB) calcd for C26H26NO4 (M+H)+ 497.2652, found 497.2654
Fmoc-L-Trp(Boc)-OEt (6h): Rf = 0.4 (Hexane: Ethyl acetate, 8:2). White solid (24 mg, 86%). 1H NMR (400 MHz, CDCl3):
δ 8.13 (m, 1H), 7.76 (d, J = 7.5 Hz, 2H), 7.58-7.53 (m, 3H), 7.44-7.37 (m, 4H), 7.33-7.22 (m,
4H), 5.49 (d, J = 8.2 Hz,1H), 4.77-4.75 (m, 1H), 4.41-4.37 (m, 2H), 4.22-4.15 (m, 3H), 3.28 (m,
1H), 1.66 (m, 9H), 1.23 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 171.7, 155.8, 143.9,
141.4, 127.8, 127.2, 127.2, 125.3, 125.2, 124.7, 124.3, 122.8, 120.1, 119.0, 115.4, 115.1, 83.8,
67.3, 61.8, 54.3, 47.2, 28.3, 14.2. HRMS (FAB) calcd for C33H35N6O2 (M+H)+ 555.2495, found
555.2498.
Fmoc-L-Arg(Pbf)-OEt (6i): Rf = 0.4 (Hexane: Ethyl acetate, 5:1). White solid (26 mg, 78%). 1H NMR (400 MHz, CDCl3):
δ 7.72 (d, J = 7.5 Hz, 2H), 7.54 (d, J = 7.0 Hz, 2H), 7.35 (t, J = 7.5 Hz, 2H), 7.26-7.23 (m, 2H),
5.73 (d, J = 4.8 Hz, 1H), 4.34-4.24 (m, 2H), 4.16-4.11 (m, 3H), 3.21 (m, 2H), 2.88 (s, 2H), 2.56
(s, 3H), 2.48 (s, 3H), 2.05 (s, 3H), 1.88-1.80 (m, 2H), 1.68-1.64 (m, 1H), 1.57-1.56 (m, 2H),
1.40 (s, 6H), 1.21 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 172.3, 158.8, 156.3, 143.9,
143.7, 141.3, 138.4, 132.3, 127.8, 127.2, 125.2, 124.7, 120.1, 117.6, 86.5, 67.2, 61.7, 47.2, 43.3,
38.7, 28.6, 22.7, 19.4, 18.0, 14.2, 12.5. HRMS (FAB) calcd for C36H45N4O7S (M+H)+ 677.3009,
found 677.3007.
Fmoc-L-Met-OEt (6j) Rf = 0.4 (Hexane: Ethyl acetate, 5:1). White solid (18 mg, 90%). 1H NMR (400 MHz, CDCl3): δ
7.77 (d, J = 7.5 Hz, 2H), 7.60 (dd, J = 7.3, 2.6 Hz, 2H), 7.41 (t, J = 7.3 Hz, 2H), 7.32 (tt, J = 7.4,
1.3 Hz, 2H), 5.44 (d, J = 8.2 Hz, 1H), 4.51-4.46 (m, 1H), 4.43-4.41 (d, J = 7.0 Hz, 2H), 4.25-
4.20 (m, 2H), 2.55-2.51 (m, 2H), 2.18-2.13 (m, 1H), 2.10 (s, 3H), 2.02-1.93 (m, 1H), 1.29 (t, J
= 7.1 Hz, 3H); 13C NMR (100 MHz, CDCl3): δ 172.0, 155.9, 143.8, 143.7, 141.3, 127.70, 127.0,
125.0, 120.0, 119.9, 67.0, 61.7, 53.2, 47.1, 32.0, 29.9, 15.5, 14.2. HRMS (FAB) calcd for C22H26NO4S (M+H)+ 400.1583,
found 400.1581.
HN
NH
NH
SO
O
O
FmocHN OEt
O
S7
General procedure for nucleophilic acyl substitution on peptide
Peptide was prepared according to Fmoc-strategy SPPS on rink amide resin (0.05 mmol), as outlined in the general
procedures. The resin-bound o-aminoanilide peptide was washed with DMF, then treated with isoamyl nitrite (10 equiv.) in
DMF at room temperature for 90 min. After the resin was filtered, washed sequentially with DCM (3 mL x 3). The
nucleophiles (4 equiv.) and DIPEA (8 equiv.) in DMF was bubbled with N2 for 20 min and then immediately added into the
activated peptidyl-resin. After 2 h, the resin was washed with DMF (3 mL x 3) and the supernatant was concentrate under
vacuo. Then, the resulting product was deprotected by using 20% piperidine in DMF for 30 min and TFA cocktail for 1.5
h. The peptide was precipitated in cold ether and collected by centrifugation. The supernatant was removed and the residue
was dissolved in 30% acetonitrile/H2O and lyophilized to afford pure product without further purification.
HSSKLQL (8a)
H2N
N NH
NH
OOH
HN
OOH
NH
O
NH2
HN
O
NH
O
H2N O
HN
O
O
OH
8a
Peptide 8a was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the peptide-resin
was activated and cleavage with ACN/H2O (1:1) in the presence of DIPEA (8 equiv.) in DMF (4 mL) for 2 h at room
temperature. The Fmoc was deprotected with 20% piperidine in DMF and global deprotection was effected using a solution
of TFA/TIS/H2O (95:2.5:2.5, 4 mL) affording pure peptide 8a as a white solid after lyophilization (34 mg, 82% yield). 1H
NMR (400 MHz, D2O): δ 8.77 (s, 1H), 7.51 (s, 1H), 4.66-4.63 (m, 1H), 4.60-4.58 (m, 1H), 4.46-4.44 (m, 3H), 4.39-4.31
(m, 2H), 3.97-3.92 (m, 4H), 3.50-3.48 (m, 2H), 3.06-3.02 (m, 2H), 2.55-2.52 (t, 1H), 2.18-2.14 (m, 1H), 2.06-2.02 (m, 1H),
1.90-1.87 (m, 1H), 1.75-1.72 (m, 9H), 1.50-1.47 (m, 2H), 0.99-0.93 (m, 12H). ESI-FTMS calcd for C35H61N11O11 (M+H)+
812.4630, found 812.4633.
Figure S1. HPLC chromatogram of compound 8a (linear gradient, 10 to 90% B over 40 min, 0.1% TFA, flow rate: 0.4 ml/min, λ = 220 nm)
S8
HSSKLQL- propargyl amine (8b)
H2N
N NH
NH
OOH
HN
OOH
NH
O
NH2
HN
O
NH
O
H2N O
HN
O
O
NH
8b
Peptide 8b was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the peptide-resin
was activated and cleavage with propargyl amine (4 equiv.) in the presence of DIPEA (8 equiv.) in DMF(4 mL) for 2 h at
room temperature. Then Fmoc was deprotected with 20% piperidine in DMF and global deprotection was effected using a
solution of TFA/TIS/H2O (95:2.5:2.5, 4 mL) affording pure peptide 8b as a white solid after lyophilization (33 mg, 78%
yield). 1H NMR (400 MHz, D2O): δ 8.77 (s, 1H), 7.52 (s, 1H), 4.66 (t, J = 5.8 Hz, 1H), 4.60 (t, J = 5.4 Hz, 1H), 4.46-4.37
(m, 5H), 4.04-3.93 (m, 6H), 3.51-3.48 (m, 2H), 3.05 (t, J = 7.5 Hz, 2H), 2.66-2.64 (m, 1H), 2.66-2.64 (m 2H), 2.16-2.13 (m,
1H), 2.07-2.03 (m, 1H), 1.93-1.46 (m, 10H), 1.52-1.46 (m, 2H), 0.98 (d, J = 5.4 Hz, 6H), 0.93 (d, J = 5.7 Hz, 6H). MS(ESI):
calcd for C38H64N12O10 (M+H)+ 849.4941, found 849.4944.
Figure S2. HPLC chromatogram of compound 8b (linear gradient of 10 to 90% B over 40 min, 0.1% TFA, flow rate: 0.4 ml/min, λ = 220 nm)
S9
LMYKA-aniline (8c)
H2N NH
O
S
HN
O
OH
NH
O
NH2
HN
O
NH
O
8c
Peptide 8c was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the peptide-resin
was activated and cleavage with aniline (4 equiv.) in the presence of DIPEA (8 equiv.) in DMF (4 mL) for 5 h at room
temperature. Then Fmoc was deprotected with 20% piperidine in DMF and global deprotection was effected using a solution
of TFA/phenol/water/thioanisole/EDT (82.5:5:5:5:2.5, 4 mL) for 3 h affording pure peptide 8c as a white solid after
lyophilization (22 mg, 66% yield). 1H NMR (400 MHz, CD3OD): δ 7.54 (d, J = 8 Hz, 2H), 7.28 (t, J = 7.0 Hz, 2H), 7.09-
7.02 (m, 3H), 6.68-6.65 (m, 2H), 4.52-4.42 (m, 3H), 4.35-4.33 (m, 2H), 3.92-3.90 (m, 1H), 3.12-3.10 (m, 1H), 3.00-2.83
(m, 6H), 2.65-2.62 (m, 1H), 2.51-2.45 (m, 2H), 2.04 (s, 3H), 1.65-1.63 (m, 8H), 1.45-1.38 (m, 6H), 0.95-0.94 (m, 6H).
MS(ESI): calcd for C38H64N12O10 (M+H)+ 700.3850, found 700.3851.
Figure S3. HPLC chromatogram of compound 8c (linear gradient of 10 to 90% B over 40 min, 0.1% TFA flow rate: 0.4 ml/min, λ = 220 nm)
S10
Ac-AYRGA-mercaptopropionic acid (8d)
NH
OHN
O
OH
NH
O
HN
HN NH2
HN
O
NH
O
S
O
OH
O
8d
Peptide 8d was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. The Fmoc was deprotected
with 20% piperidine in DMF peptide-resin and then added 2 equvi. of acetic anhydride in DMF for 10 min. Thereafter, the
peptide-resin was activated and cleavage with 3-mercaptopropionic acid (4 equiv.) in the presence of DIPEA (8 equiv.) in
DMF (4 mL) for 2 h at room temperature. The global deprotection was effected using a solution of TFA/TIS/H2O (95:2.5:2.5,
4 mL) affording pure peptide 8d as a white solid after lyophilization (27 mg, 80% yield). 1H NMR (400 MHz, CD3OD): δ
7.03 (d, J = 8.5 Hz, 2H), 6.68 (d, J = 8.5 Hz, 2H), 4.49-4.44 (m, 2H), 4.30-4.27 (m, 1H), 4.20-4.1 (m, 1H), 3.87 (s, 2H),
3.29-3.28 (m, 1H), 3.25-3.21 (m, 2H), 3.04-3.01 (m, 3H), 2.91-2.84 (m, 1H), 2.54 (t, J = 7.0 Hz, 2H), 1.93 (s, 3H), 1.88-
1.84 (m, 1H), 1.59-1.55 (m, 2H), 1.34 (d, J = 7.3 Hz, 3H), 1.23 (d, J = 7.2 Hz, 3H). MS(ESI): calcd for C38H64N12O10
(M+H)+ 667.2868, found 667.2865.
Figure S4. HPLC chromatogram of compound 8d (linear gradient of 10 to 90% B over 40 min, 0.1% TFA, flow rate: 0.4 ml/min, λ = 220 nm).
S11
Preparation of peptide decorated dendrimer
Scheme S2:
Peptide was prepared according to Fmoc-strategy SPPS on rink amide resin (0.2 mmol), as outlined in the general procedures.
At the end of the synthesis, the resin-bound o-aminoanilide-peptide was washed with DMF and DCM, then treated with
isoamyl nitrite (10 equiv.) at room temperature for 90 min. The resin was filtered, washed with DCM (3 mL x 3). The
solvent DMF (4 ml) with DIPEA (8 equiv.) was bubbled with N2 for 20 min. Then, it was treated with peptidyl resin and
PAMAM dendrimer. After 2 h, the resin was washed with DMF and the solution was concentrate in vacuo. The resulting
product was deprotected by using 20% piperidine in DMF for 30 min and then precipitated with cold ether (25 mL x 2) and
collected by centrifugation. After that, the product was concentrate under vacuo and then treated with TFA/TIS/H2O
(95:2.5:2.5 v/v/v, 4 mL) was used to remove the protecting group at 25 °C for 1.5 h. Finally, the resulting peptide decorated
dendrimer was allowed to precipitated with cold ether (25 mL x 2) and collected by centrifugation. The supernatant was
removed and the residue was dissolved in 30% ACN/H2O and lyophilized to afford pure product without further purification.
PDI value was obtained from Gel Permeation chromatogram(GPC) instrumentation. Conditions: preparation of
compound 11a-f (1 mg/ml in H2O); TSK G2000SW column; elute: 0.1 % TFA in H2O; follow rate: 1 ml/min;
detector: UV detector @ 214nm. A typical combined SEC of a reference G0-G7 PAMAM dendrimer having MW
from 517 to 116,000 dalton.
S12
(G:5)-dendric- PAMAM- (Leu)60 (8e)
H2N
O
NHG5
PAMAM
(NH2)
60
60
8e
White solid (11 mg, 79% yield). 1H NMR (400 MHz, D2O): δ 3.95-3.91 (m, 60H), 3.64-3.30 (m, 905H), 2.82-2.76 (m,
312H), 1.70-1.59 (m, 195H), 0.91-0.90 (m, 362H). PDI = 1.07.
Figure S5. GPC chromatogram of peptide decorated dendrimer 8e (isocratic of 0.1% TFA in DIW over 30 min, flow rate: 1.0 ml/min, λ = 214 nm)
min2 4 6 8 10 12 14 16 18
mAU
0
50
100
150
200
250
300
350
DAD1 A, Sig=214,8 Ref=360,100 (D:\DATA\ANAND\DENDRIMER\G5-LEU.D)
NH
NH
NH
NH
NH
NH
NH
NH
NH
S13
(G:5)-dendric-PAMAM-( LQLKSSH)32 (8f)
N
ONH
O
HN
N
O NH
O
HN
NH
NH2
N O
O NH
N
O NH
O
HN
NH2
NH2
N
ONH
O
HN
NH2
NH2
NO
ONH
N
ONH
O
HN
NH2NH
N
O
HN
N
O NH
O
NH
N
N
O NH
O
NH
NHO
HN
O
N
ONH
O
HN
N
O
HN
O
HN
NH2
NH2
NO
NH
ONH
N
O NH
O
HN
NH2
NHN
O NH
O
HN
NH2
NH2
N O
O NH
N
O NH
O
HN
HNNH2
N
O
HN
O
NH
N
O
HN
O
NH
NH
NH2
N
O
NH
O
HN
N
O
HN
O
NH
NH2
NH2
N
O
HN
O
HN
NH2
NH2
NO
NH
ONH
N
O NH
O
HN
NH2
NH
N
O
HN
O
NH
N O
HN
ONH NH
NH2
N
ONH
O
HN N
O
HN
ONH
NH2
NH2
NO
HN
ONH NH
NH2
N
ONH
O
HN
N
O
HN
O
NH NH2
NH2
N O
HN
ONH
NO
HNO NH
NH2
NH
N
O NH
O
HN
N O
HN
O NHNH2
NH2
N O
HN
ONH NH2
NH
N
ONH
O
HN N
O
HN
ONH
NH2
NH2
OHN
N O
NHONH
N
N
O
HN
ONHH
N
O
HNO
N
O
HNONH
N
O
HNONH
NH2NH
N
O NH
O
HN
NO
HNO NH
NH2NH2
NO
HNO NH
NH2
NH
N
O NH
O
HN
N O
HNO NH
NH2
NH2
N
O
HN
O
NH
N
O
HN
O
NH
NH2NH
N
O O
HN
N
O
HNO
NH
NH2H2N
N
O
HNONH
NH2HN
N
O NH
O
HN
NO
HNO NH
NH2NH2
N
O
HN
O
NH
N
OHN
O
NH
H2NNH
NO
OHN
N
OHN
O
NH
H2NH2N
N
OHN
O
NH
NHH2N
N
OO
HN
N
OHN
ONH
NH2H2N
NH2
NHN
HN
OHO
NH
OHO
HN
O
H2N
NH
OHN
O
NH2O
NH
O
O
NH2
NHN
HN
OHO
NH
OHO
HN
O
NH2
NH
OHN
O
NH2O
NH
O
O
NH2
NHN
HN
OHO
NH
O
HOHN
O
H2N
NH
OHN
O
NH2O
NH
O
O
NH2
NHN
HN
O
HO
NH
OHO
HN
O
NH2
NH
O
HN
O
NH2O
NH
O
O
NH2
NHN
HN
O
HO
NH
OHO
HN
O
NH2
NH
O
HN
O
NH2O
NH
O
O
NH2
N
HN
HNO
HONH
O
HO
HNO
NH2NH
O
HNO
NH2
ONH
O
O
NH2N
HN HN O
OHNH
O
HO
HN ONH2
NH
O
HN ONH2
ONH
O
O
NH2
N
NH
HN
O
OH
NHO
HOHN
ONH2
NHO
HN
ONH2
O
NHO
O
NH2
NHN
NH
O
HO
HNO
HONH
O
H2N
HNO
NH
O
NH2
O
HNOO
NH2
NHN
NH
O
HO
HNO
HONH
O
H2N
HNO
NH
O
NH2
O
HNOO
NH2
NHN
HN
OHO
NH
OHOHN
O
NH2
NH
OHN
O
NH2O
NH
O
O
NH2
N
HN
HNO
HONH
O
HO
HNO
NH2
NH
O
HNO
NH2
O
NH
O
O
NH2N
HN HN O
OHNH
O
HO
HN ONH2
NH
O
HN ONH2
ONH
O
O
NH2
N
NH
HN
O
OH
NHO
HO HN
O
NH2
NHO
HN
ONH2
O
NHO
O
NH2
N
NH
HN
O
OH
NHO
HO HN
ONH2
NHO
HN
ONH2
O
NHO
O
N
OHN
O
NH
N
OHN
O
NH
NH
H2N
NO
OHN
N
OHN
O
NH
H2NH2N
N
OHN
O
NH
H2NH2N
NO
OHN
N
OHN
O
NH
H2NHN
N
ONH
N
OHN
O
HN
N
N
OHN
O
HN
HN O
NH
O
N
OHN
O
NH
N
ONH
O
HN
H2N
H2N
N
O
NH
OHN
N
OHN
O
NH
NH
H2N N
OHN
O
NH
H2N
H2N
NO
OHN
N
OHN
O
NH
NHH2N
N
O
NH
O
HN
N
ONH
O
HN
NH
H2N
N
O
NH
O
NH
N
ONH
O
HN
H2N
H2N
N
ONH
O
HN
H2N
H2N
N
O
NH
OHN
N
OHN
O
NH
H2N
NH
N
O
NH
O
HN
NO
NH
OHNNH
H2N
N
O
NH
O
NHN
O
NH
O
HNH2N
H2N
NO
NH
O
HN
NH
H2N
N
O
NH
O
NH
N
ONH
O
HN
H2N
H2N
NO
NH
OHN
NO
NHOHN
H2N NH
N
O
NH
O
NH
NO
NH
OHNH2N
H2N
NO
NH
OHNH2N
NH
N
O
NH
O
NHN
O
NH
O
HNH2N
H2N
ONH
NO
HN OHN
N
N
O
NH
OHN
NH
O
NHO
N
O
NH OHN
N
O
NH OHN
H2N NH
N
ONH
O
NH
N
O
NH OHN
H2NH2N
NO
NH OHN
H2N NH
N
O
NH
O
NH
NO
NHOHN
H2NH2N
N
O
NH
O
HN
N
ONH
O
HN
H2N HN
N
OO
NH
N
O
NHO
HN
H2N NH2
N
O
NH OHN
H2N NH
N
ONH
O
NH
NO
NH OHN
H2NH2N
N
O
NH
O
HN
N
O NH
O
HN
NH2
NH
NO
O NH
N
ONH
O
HN
NH2
NH2
N
ONH
O
HN
HNNH2
N
OO
NH
N
ONH
OHN
NH2NH2
H2N
N NH
NH
O OH
HN
OOH
NH
O
NH2
HN
O NH
O
H2N O
HN
O
O
H2N
N NH
NH
OOH
HN
OOH
NH
O
NH2
HN
O
NH
O
H2N O
HN
O
O
H2N
N NH
NH
O OH
HN
O
OH
NH
O
NH2
HN
O NH
O
H2N O
HN
O
O
H2N
NNH
NH
O
OHHN
O OH
NH
O
H2N
HN
O
NH
O
H2NO
HN
O
O
H2N
NNH
NHO
OHHN
OOH
NHO
H2N
HN
O
NHO
H2NO
HN
O
O
H2NN
NH
NHO
OHHN
O
OH
NHO
H2N HN
O
NHO
H2N
OHN
O
O
H2NN
NHNHO
HOHN
O
OH
NHO
H2N
HN
O
NHO
H2N
OHN
O
O
H2N
N
HN
NH
O
HO
HNO
OHNH
OH2N
HNO
NH
OH2N
O
HNO
O
H2N
NNH
HN
O
OH
NHO
OHHN
O
NH2
NHO
HN
O
H2N
O
NHO O
H2N
NNH
HN
O
OH
NHO
OHHN
O
NH2
NHO
HN
O
H2N
O
NHO O
H2N
N NH
NH
OOH
HN
O OH
NH
O
H2N
HN
O
NH
O
H2N O
HN
O
O
H2N
N
NH
NHO
OHHN
O
OH
NHO
H2NHN
O
NHO
H2N
O
HN
O
O
H2NN
NHNHO
HOHN
O
OH
NHO
H2N
HN
O
NHO
H2N
OHN
O
O
H2N
N
HN
NH
O
HO
HN O
OHNH
O
H2N
HN O
NH
OH2N
O
HN O
O
H2N
N
HN
NH
O
HO
HN O
OHNH
O
H2N
HN O
NH
OH2N
O
HN O
O
H2N
N NH
NH
O OH
HN
O
OH
NH
O
NH2
HN
O NH
O
H2N O
HN
O
O
NH2
NHN
HN
OHO
NH
O
HOHN
O
H2N
NH
OHN
O
NH2O
NH
O
O
C2382H4416N858O572
Exact Mass: 54198.2840
White solid (12 mg, 70 %). 1H NMR (400 MHz, D2O): δ 8.77 (s, 32H), 7.52 (s, 32H), 4.38-4.37 (m, 212H), 3.94 (m, 210H),
3.72-3.22 (m, 1739H), 3.05 (m,130H), 2.88-2.70 (m, 529H), 2.41(m, 103H), 1.82-1.37 (m, 410H), 0.98-0.93 (m, 388H).
PDI = 1.10.
Figure S6. GPC chromatogram of peptide decorated dendrimer 8f (isocratic of 0.1% TFA in DIW over 30 min, flow rate: 1.0 mL/min, λ = 214 nm)
min0 2 4 6 8 10 12 14 16 18
mAU
0
50
100
150
200
VWD1 A, Wavelength=214 nm (D:\DATA\ANAND\DENDRIMER\G5-PSA..D)
S14
Gel Permeation Chromatography
The experiments were conducted at 25oC at a flow rate of 1.0 mL/min with 0.1% TFA in DIW as eluent and detected at 214 nm. The results of filtration were followed with the figures that (8a) (9.323 min), ((G:5)-dendri-PAMAM -(NH2)128) (6.774 min), (8e) (6.016 min) and (8f) (5.395 min) are discovered.
Figure S7. GPC chromatogram of compound 8a, (G:5)-dendri-PAMAM -(NH2)128, 8e and 8f.
Figure S8. 1H NMR Spectrum of Compound 8a, 8f, 8e and (G:5)-dendri-PAMAM -(NH2)128
S15
Preparation of cyclic peptide
HN
N
HN
HNNH
N
N
NH
NH
NH
NH
HN
HN
HN
O
O
O
O O
O
O
O
O
O
OO
O
O
OH
NH2
HO
NH
NH2
HN
HO
O
S
S
Asp
Pro
Phe
Cys
IlePro
Pro
Ile
Ser
Lys
CysArg
GlyThr
11
The linear SFTI-1 peptide was prepared according to Fmoc-strategy SPPS on rink amide resin (0.05 mmol), as outlined in
the general procedures. At the end of the synthesis, the Fmoc protected peptide-resin was deprotected with 20% piperidine
in DMF and washed with DMF (3 mL x 3). The free N-terminal amine resin-bound o-aminoanilide-peptide is activated with
isoamyl nitrite (10 equiv.) at room temperature for 90 min. The resin was filtered, washed with DCM (3 mL x 3). The on
resin N-terminal amine is reacted with C-terminal acid and cleaved from resin in the presence of DIPEA (4 equiv.) in DMF
(3 mL) for 5 h at room temperature. Then global deprotection was effected using a solution of TFA/TIS/H2O (95:2.5:2.5, 4
mL) affording the oxidized SFTI-1 peptide was acquired 11 as a white solid after lyophilization (12 mg, 42% yield). 1H
NMR (600 MHz, D2O): δ 8.23 (s, 1H), 7.51-7.15 (m, 5H), 4.58-4.24 (m, 6H), 4.23-4.05 (m, 2H), 4.06-3.57 (m, 8H), 3.56-
3.27 (m, 4H), 3.17 (m, 3H), 2.94 (m, 5H), 2.24 (m, 4H), 2.17-1.78 (m, 10H), 1.75 (m, 4H), 1.57-1.34 (m, 4H), 1.29-1.04
(m, 4H), 1.02-0.66 (m, 8H). Mass (MALDI, m/z) calcd for C67H105N18O18S2 (M+H)+ 1513.7, found 1513.6.
Figure S9. HPLC chromatogram of compound 11 (linear gradient of 10 to 90% B over 30 min, 0.1% TFA, flow rate: 0.5 ml/min, λ = 220 nm)
S16
Figure S10. MALDI-TOF MS spectrum of cyclic peptide 11
Figure S11. MALDI-TOF MS spectrum of linear peptide SFTI-1.
S17
Synthesis of VPGVG (13)
Peptide was prepared according to the Fmoc-strategy SPPS on rink amide resin (0.1 mmol/g loading; 0.78 mmol). The
peptide was synthesized on an automated PS3 peptide synthesizer using Fmoc-Xaa-OH (2 equiv.), NMM (4 equiv.) and
HBTU (2 equiv.). The coupling was performed for 60 min and Fmoc-deprotection was achieved using 20% piperidine (10
min x 2). After washing the resin, the cleavage was carried out by treating the resin with cleavage cocktail TFA: H2O (95:5)
for 1.5 h. Then the solution was precipitation with cold Et2O and centrifugation the crude peptides can be obtained. After
lyophilisation, the desired peptide was afford in 86 % yield. 1H NMR (400 MHz, D2O): δ 4.39- 4.35 (m, 1H), 4.06-4.02 (m,
2H), 3.85-3.77 (m, 4H), 3.68-3.50 (m, 2H), 2.21-1.81 (m, 6H), 0.98 (d, J = 7.0 Hz, 3H), 0.88 (d, J = 6.9 Hz, 3H), 0.82 (dd,
J = 6.8, 5.3 Hz, 6H). ESI MS calcd for C19H35N6O5 (M+H)+ 427.2, found 427.2.
NH2
OHN
O
NH
OHN
O
N
13O
H2N
Figure S12. HPLC chromatogram of compound 13 (linear gradient of 10 to 90% B over 30 min, 0.1% TFA, flow rate: 0.4 ml/min, λ = 220 nm)
Figure S13. ESI-MS spectrum of compound 13
min5 10 15 20 25
Norm.
0
200
400
600
800
DAD1 C, Sig=220,8 Ref=360,100 (D:\DATA\ANAND\20170427\023-0301.D)
12
.83
2
S18
General procedure for preparation of elastin peptide
Scheme S3:
Peptide was prepared according to Fmoc-strategy SPPS on rink amide resin, as outlined in the general procedures. The
resin-bound o-aminoanilide peptide was washed with DMF, then treated with isoamyl nitrite (10 equiv.) in DMF at room
temperature for 90 min. After the resin was filtered, washed sequentially with DCM (3 mL x 3). The peptide nucleophile
and DIPEA (4 equiv.) in DMF was bubbled with N2 for 20 min and then immediately added into the activated peptidyl-
resin. After 2 h, the resin was washed with DMF (3 mL x 3) and the supernatant was concentrate. The resulting product was
deprotected by using 20% piperidine in DMF for 30 min, thereafter completely removing the DMF. The peptide was
precipitated in cold ether and collected by centrifugation. The supernatant was removed and the residue was dissolved in
30% acetonitrile/H2O and lyophilized to afford pure product without further purification.
S19
(VPGVG)2 (14)
Peptide 7g (0.05 mmol) was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the
peptide-resin was activated and cleavage with compound 13 (17 mg, 0.04 mmol) in the presence of DIPEA (4 equiv.) in
DMF for 2 h at room temperature. Then Fmoc was deprotected with 20% piperidine in DMF affording pure peptide 14 as a
white solid after lyophilization (31 mg, 92% yield). 1H NMR (400 MHz, D2O): δ 4.38-4.27 (m, 3H), 4.06-4.01 (m, 3H),
3.85-3.65 (m, 9H), 3.78-3.50 (m, 3H), 2.26-1.77 (m, 12H), 0.99 (d, J = 7.0 Hz, 3H). 0.92-0.78 (m, 21H). Mass (MALDI,
m/z) calcd for C38H66N11O10 (M+H)+ 836.4, found 836.5.
NH2
OHN
O
NH
OHN
O
N
O
NH
14 2
H
Figure S14. HPLC chromatogram of compound 14 (linear gradient of 10 to 90% B over 30 min, 0.1% TFA, flow rate: 0.5 ml/min, λ = 220 nm)
Figure S15. MALDI-TOF MS spectrum of compound 14
S20
(VPGVG)3 (15)
Peptide 7g (0.04 mmol) was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the
peptide-resin was activated and cleavage with compound 14 (25 mg, 0.03 mmol) in the presence of DIPEA (4 equiv.) in
DMF for 2 h at room temperature. Then Fmoc was deprotected with 20% piperidine in DMF affording pure peptide 15 as
a white solid after lyophilization (35 mg, 93% yield). 1H NMR (400 MHz, D2O): δ 4.38-4.27 (m, 4H), 4.06-400 (m, 4H),
3.84-3.77 (m, 12H), 3.66-3.50 (m, 4H), 2.21-1.78 (m, 18H), 0.99 (d, J = 7.0 Hz, 3H). 0.92-0.79 (m, 33H). Mass (MALDI,
m/z) calcd for C57H96N16NaO15 (M+Na)+ 1267.7, found 1267.5.
NH2
OHN
O
NH
OHN
O
N
O
NH
15 3
H
Figure S16. HPLC chromatogram of compound 15 (linear gradient of 10 to 90% B over 0 min, 0.1% TFA, flow rate: 0.5 ml/min, λ = 220 nm)
Figure S17. MALDI-TOF MS spectrum of compound 15
S21
(VPGVG)4 (16)
Peptide 7g (0.03 mmol) was prepared according to Fmoc-strategy SPPS, as outlined in the general procedures. After the
peptide-resin was activated and cleavage with compound 15 (24 mg, 0.02 mmol) in the presence of DIPEA (4 equiv.) in
DMF for 2 h at room temperature. Then Fmoc was deprotected with 20% piperidine in DMF affording pure peptide 16 as a
white solid after lyophilization (30 mg, 90% yield). 1H NMR (400 MHz, D2O): δ 4.36-4.28 (m, 6H), 4.06-4.01 (m, 5H),
3.84-3.72 (m, 20H), 3.65-3.50 (m, 5H), 2.24-1.78 (m, 24H), 0.99 (d, J = 7.0 Hz, 3H), 0.91-0.71 (m, 45H). Mass (MALDI,
m/z) calcd for C76H127N21NaO20 (M+Na)+ 1676.9, found 1676.6.
NH2
OHN
O
NH
OHN
O
N
O
NH
16 4
H
Figure S18. HPLC chromatogram of compound 16 (linear gradient of 10 to 90% B over 30 min, 0.1% TFA, flow rate: 0.5 ml/min, λ = 220 nm).
Figure S19. MALDI-TOF MS spectrum of compound 16
S22
NMR Spectra
Figure S20. 1H and 13C NMR spectrum of compound 6a
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
14.2
6
21.9
622
.95
24.8
4
41.9
547
.29
52.6
1
61.4
6
67.0
2
120.
0512
0.07
125.
1812
7.14
127.
78
141.
4014
3.86
144.
05
156.
07
173.
29
S23
Figure S21. 1H and 13C NMR spectrum of compound 6b
3.20
1.95
3.47
1.11
1.28
0.97
0.86
1.91
5.92
2.30
2.37
2.37
1.22
51.
242
1.26
0
3.10
83.
122
3.13
64.
153
4.17
14.
189
4.20
84.
227
4.34
44.
362
4.41
94.
437
4.44
54.
463
5.28
05.
298
7.10
27.
119
7.24
87.
268
7.28
87.
309
7.32
87.
383
7.40
17.
420
7.55
17.
567
7.58
47.
757
7.77
6
14.2
2
38.4
0
47.2
7
54.8
9
61.6
5
67.0
3
120.
0712
0.09
125.
1612
5.23
127.
1512
7.21
127.
8112
8.65
129.
4813
5.89
141.
4114
3.86
143.
97
155.
64
171.
58
S24
Figure S22. 1H and 13C NMR spectrum of compound 6c
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
3.11
8.80
0.95
0.85
3.00
0.93
1.00
0.87
0.85
1.97
2.02
1.90
2.00
1.25
61.
274
1.29
21.
454
2.74
82.
759
2.79
02.
801
2.91
92.
931
2.96
22.
973
4.21
24.
229
4.23
34.
245
4.25
14.
262
4.31
54.
342
4.36
04.
400
4.41
84.
426
4.58
14.
602
5.82
45.
844
7.28
57.
304
7.32
37.
373
7.39
17.
410
7.58
77.
602
7.61
87.
745
7.76
4
14.2
3
28.1
3
37.9
2
47.2
050
.70
61.8
9
67.3
3
81.8
6
120.
0812
5.23
125.
2812
7.16
127.
81
141.
3914
3.84
144.
02
156.
08
170.
1117
0.99
S25
Figure S23. 1H and 13C NMR spectrum of compound 6d
2.86
0.95
1.02
1.61
2.87
1.67
1.03
0.81
17.0
82.
021.
842.
00
1.25
31.
271
1.28
81.
900
1.91
81.
936
1.95
82.
206
2.21
62.
234
2.33
62.
353
2.37
52.
395
4.18
24.
188
4.19
94.
206
4.21
64.
232
4.25
04.
358
4.37
64.
384
4.40
34.
437
4.45
54.
464
5.63
55.
655
7.22
77.
230
7.24
67.
259
7.26
27.
279
7.29
27.
297
7.30
27.
311
7.31
57.
320
7.32
37.
338
7.37
57.
394
7.41
17.
425
7.59
77.
615
7.75
47.
773
0102030405060708090100110120130140150160170180190200f1 (ppm)
S26
Figure S24. 1H and 13C NMR spectrum of compound 6e
3.04
1.66
2.09
2.89
0.83
1.70
5.91
14.1
61.
792.
00
1.14
61.
164
1.18
2
3.08
83.
098
4.06
94.
080
4.08
64.
104
4.11
14.
113
4.12
04.
129
4.24
74.
266
4.27
44.
299
4.31
84.
349
4.36
74.
374
4.39
24.
614
4.62
24.
634
6.56
46.
593
7.11
17.
118
7.12
47.
132
7.24
77.
249
7.26
77.
268
7.28
27.
301
7.31
27.
318
7.32
67.
358
7.37
77.
395
7.42
67.
612
7.63
17.
649
7.74
07.
758
0102030405060708090100110120130140150160170180190200f1 (ppm)
S27
Figure S25. 1H and 13C NMR spectrum of compound 6f
3.12
1.89
3.09
2.82
0.94
11.4
88.
151.
782.
00
1.24
21.
260
1.27
7
2.66
2
4.16
54.
177
4.19
54.
211
4.22
64.
244
4.26
14.
363
4.37
64.
392
5.27
95.
298
5.31
6
7.19
47.
197
7.21
57.
230
7.23
37.
248
7.26
07.
279
7.29
87.
309
7.32
87.
383
7.40
37.
424
7.61
57.
626
7.76
17.
779
0102030405060708090100110120130140150160170180190f1 (ppm)
14.2
4
29.8
1
47.2
0
53.0
7
61.9
2
67.2
4
120.
0912
5.25
125.
2812
7.01
127.
2012
7.83
127.
8412
8.13
129.
6314
1.39
141.
4014
3.86
144.
0014
4.39
155.
70
170.
60
S28
Figure S26. 1H and 13C NMR spectrum of compound 6g
3.84
12.1
40.
890.
99
1.85
2.92
2.80
0.76
0.77
1.93
1.99
1.92
2.00
1.24
81.
266
1.28
41.
350
1.37
11.
420
1.47
01.
487
1.66
21.
676
1.69
61.
708
1.81
81.
830
1.84
21.
854
3.09
13.
106
4.16
64.
184
4.19
44.
202
4.21
14.
220
4.22
84.
329
4.33
64.
340
4.36
14.
384
4.40
2
5.43
75.
456
7.28
07.
298
7.31
77.
365
7.38
47.
402
7.58
17.
588
7.59
97.
605
7.73
87.
757
14.2
8
22.4
428
.50
29.6
932
.29
40.1
8
47.2
6
53.8
5
61.5
7
67.0
7
79.2
4
120.
0712
5.20
127.
1512
7.79
141.
3914
3.85
144.
02
156.
16
172.
56
S29
Figure S27. 1H and 13C NMR spectrum of compound 6h
3.64
9.23
1.70
3.02
2.11
0.85
0.82
4.24
3.11
2.92
2.00
0.97
1.22
11.
238
1.25
6
1.65
7
3.27
74.
169
4.18
64.
203
4.22
04.
368
4.38
74.
409
4.75
04.
763
4.76
9
5.47
05.
490
7.23
47.
248
7.25
37.
287
7.30
57.
321
7.33
17.
374
7.39
27.
410
7.44
57.
534
7.55
47.
750
7.76
8
8.13
5
14.2
1
28.2
9
47.2
3
54.3
2
61.8
1
67.2
9
83.8
0
115.
0511
5.42
118.
9712
0.09
122.
7712
4.29
124.
6912
5.24
125.
2712
7.17
127.
1912
7.81
141.
3814
3.87
155.
83
171.
71
S30
Figure S28. 1H and 13C NMR spectrum of compound 6i
3.02
6.00
1.67
1.05
1.81
2.93
2.96
2.91
0.63
1.86
1.88
2.89
2.83
0.93
2.31
2.23
2.03
1.91
2.00
1.19
81.
216
1.23
41.
402
1.54
01.
557
1.57
31.
644
1.65
81.
677
1.69
51.
798
1.81
11.
884
2.05
12.
484
2.56
02.
777
2.85
32.
854
2.88
12.
927
3.19
23.
206
4.11
34.
127
4.14
34.
160
4.24
34.
256
4.27
74.
306
4.32
44.
342
5.71
95.
731
6.22
3
7.22
77.
248
7.26
47.
332
7.35
07.
369
7.53
27.
550
7.70
87.
727
0102030405060708090100110120130140150160170180190200f1 (ppm)
12.5
414
.22
18.0
319
.37
22.7
428
.64
38.7
143
.26
47.1
6
61.7
4
67.2
1
86.4
7
117.
5912
0.06
124.
7212
5.19
127.
1712
7.82
132.
3213
8.41
141.
3414
3.73
143.
86
156.
3415
8.83
172.
33
S31
Figure S29. 1H and 13C NMR spectrum of compound 6j
3.40
1.16
2.76
0.98
1.91
3.15
1.86
1.04
0.94
2.07
2.06
2.04
2.00
1.27
61.
294
1.31
21.
967
1.98
62.
003
2.10
42.
164
2.51
22.
531
2.54
42.
551
4.19
94.
216
4.23
34.
249
4.40
84.
425
4.45
94.
478
4.49
14.
510
5.42
45.
444
7.29
87.
301
7.30
57.
317
7.32
07.
323
7.33
57.
338
7.34
27.
388
7.40
67.
424
7.58
97.
595
7.60
77.
614
7.75
97.
760
7.77
87.
779
14.1
515
.47
29.8
532
.03
47.1
4
53.1
7
61.7
0
66.9
6
119.
9511
9.97
125.
0312
7.03
127.
70
141.
2814
3.65
143.
83
155.
84
171.
95
S32
Figure S30. 1H NMR spectrum of compound 8a
Figure S31. 1H NMR spectrum of compound 8b
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
6.17
5.93
2.35
10.7
31.
061.
032.
040.
80
1.97
1.92
6.19
5.34
1.02
0.99
0.99
1.00
0.92
0.94
0.98
0.99
1.64
1.65
1.71
1.72
1.74
1.76
2.39
2.41
2.64
2.65
3.03
3.05
3.50
3.51
3.95
3.96
4.01
4.37
4.38
4.41
4.43
4.44
4.46
4.59
4.60
4.62
4.64
4.66
4.67
7.52
8.77
S33
Figure S32. 1H NMR spectrum of compound 8c
Figure S33. 1H NMR spectrum of compound 8d
6.54
6.92
8.53
2.99
3.04
6.62
1.15
1.27
1.90
3.37
2.65
3.19
1.82
1.87
0.92
0.93
0.94
0.94
0.95
0.95
0.96
0.97
1.38
1.39
1.40
1.43
1.45
1.61
1.63
1.64
1.65
1.66
1.67
1.77
2.04
2.05
2.49
2.62
2.63
2.64
2.65
2.77
2.83
2.88
2.89
2.90
2.90
2.91
2.96
3.11
3.27
3.28
3.28
3.29
3.29
3.32
4.33
4.34
4.35
4.49
4.85
6.65
6.65
6.65
6.66
6.67
6.67
6.68
7.02
7.02
7.03
7.04
7.04
7.05
7.06
7.07
7.26
7.28
7.30
7.53
7.53
7.55
7.55
3.00
2.99
2.02
1.02
0.98
2.90
1.84
1.45
2.94
2.28
1.40
1.76
1.00
0.90
1.82
2.04
2.00
1.22
1.24
1.33
1.35
1.55
1.57
1.59
1.69
1.70
1.72
1.73
1.84
1.86
1.88
1.93
2.54
2.55
3.01
3.03
3.04
3.28
3.28
3.29
3.87
4.16
4.17
4.19
4.20
4.27
4.28
4.29
4.30
4.44
4.46
4.46
4.47
4.48
4.49
6.67
6.69
7.02
7.04
S34
Figure S34. 1H NMR spectrum of compound 8e
Figure S35. 1H NMR spectrum of compound 8f
362.
09
195.
28
312.
32
905.
84
60.5
0
0.80
0.81
1.49
1.51
1.51
1.53
1.56
1.58
1.60
2.66
2.71
2.72
2.72
2.72
3.20
3.21
3.22
3.39
3.52
3.52
3.52
3.52
3.52
3.52
3.53
3.53
3.53
3.53
3.53
3.53
3.53
3.53
3.53
3.54
3.54
3.54
3.81
3.83
3.85
388.
60
410.
74
103.
30
529.
00
130.
20
1739
.50
210.
56
212.
42
31.8
4
32.9
6
0.92
0.98
1.65
1.66
1.72
1.74
1.74
1.74
2.41
2.41
2.41
2.91
3.45
3.45
3.45
3.59
3.59
3.59
3.71
3.72
4.36
4.36
4.36
4.36
4.37
4.37
4.37
4.38
7.52
8.77
S35
Figure S36. 1H NMR spectrum of compound 14
Figure S37. 1H NMR spectrum of compound 8g
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
S36
Figure S38. 1H NMR spectrum of compound 8h
Figure S39. 1H NMR spectrum of compound 8i
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
S37
Figure S40. 1H NMR (600 MHz) spectrum of cyclic peptide 11
0.00.51.01.52.02.53.03.54.04.55.05.56.06.57.07.58.08.59.09.510.0f1 (ppm)
HN
N
HN
HNNH
N
N
NH
NH
NH
NH
HN
HN
HN
O
O
O
O O
O
O
O
O
O
OO
O
O
OH
NH2
HO
NH
NH2
HN
HO
O
S
S
Asp
Pro
Phe
Cys
IlePro
Pro
Ile
Ser
Lys
CysArg
GlyThr
11
S38
Chiral HPLC chromatogram
Figure S41. Chiral HPLC chromatogram of Fmoc-D-Ala-OEt (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm). Synthesis of Fmoc-D-Ala-OEt using general procedure for nucleophilic acyl substitution on benzotriazole resin.
Figure S42. Chiral HPLC chromatogram of Fmoc-L-Ala-OEt (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm). Synthesis of Fmoc-L-Ala-OEt using general procedure for nucleophilic acyl substitution on benzotriazole resin.
Figure S43. Chiral HPLC chromatogram of compound 6a (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm).
Fmoc-D-Ala-OEt
Fmoc-L-Ala-OEt
Fmoc-L-Leu-OEt (6a)
S39
Figure S44. Chiral HPLC chromatogram of compound 6b (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S45. Chiral HPLC chromatogram of compound 6c (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S46. Chiral HPLC chromatogram of compound 6d (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Fmoc-L-Phe-OEt
6b
Fmoc-L-Asp(OtBu)-OEt
6c
Fmoc-L-Gln(Trt)-OEt
6d
S40
Figure S47. Chiral HPLC chromatogram of compound 6e (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S48. Chiral HPLC chromatogram of compound 6f (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S49. Chiral HPLC chromatogram of compound 6g (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Fmoc-L-His(Trt)-OEt
6e
Fmoc-L-Cys(Trt)-OEt
6f
Fmoc-L-Lys(Boc)-OEt
6g
S41
Figure S50. Chiral HPLC chromatogram of compound 6h (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S51. Chiral HPLC chromatogram of compound 6i (isocratic of 40:60 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
Figure S52. Chiral HPLC chromatogram of compound 6j (isocratic of 60:40 n- hexane/iPrOH; flow rate: 1.0 mL/min, λ = 220 nm)
References
[1] S. Krupkova, P. Funk, M. Soural, J. Hlavac, ACS Combinatorial Science 2013, 15, 20-28.
[2] A. R. Katritzky, S. A. Belyakov, D. O. Tymoshenko, Journal of Combinatorial Chemistry 1999, 1, 173-176.
Fmoc-L-Trp(Boc)-OEt
6h
Fmoc-L-Arg(pbf)-OEt
6i
Fmoc-L-Met-OEt
6j