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(12) STANDARD PATENT APPLICATION (11) Application No. AU 2008202217 A9(19) AUSTRALIAN PATENT OFFICE
(54) TitleNucleic acids and corresponding proteins entitled 191PAD12(b) useful in treatment anddetection of cancer
(51) International Patent Classification(s)C07K 14/00 (2006.01) G01N 33/574 (2006.01)A61K 47/48 (2006.01) A61K 38/00 (2006.01)C07K 14/47 (2006.01)
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Application No: 2008202217 (22) Date of Filing: 2008.05.20
Publication Date:Publication Journal Date:Corrigenda Journal Date:
2008.06.052008.06.052008.06.12
Divisional of:2003228717
Applicant(s)Agensys, Inc.
Inventor(s)Jakobovits, Aya;Ge, Wangmao;Faris, Mary;Raitano, Arthur B.;Challita-Eid, Pia M.
Agent AttorneyFB Rice Co, Level 23 200 Queen Street, Melbourne, VIC, 3000
ABSTRACT00O A novel gene 191 P4D 12(b) and its encoded protein, and variants thereof, are
described wherein 191P4D12(b) exhibits tissue specific expression in normal adulttissue, and is aberrantly expressed in the cancers listed in Table I. Consequently,
191 P4D 12(b) provides a diagnostic, prognostic, prophylactic and/or therapeutic targetfor cancer. The 191P4D12(b) gene or fragment thereof, or its encoded protein, or
CI variants thereof, or a fragment thereof, can be used to elicit a humoral or cellular
immune response; antibodies or T cells reactive with 191P4D12(b) can be used in
active or passive immunization.'
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AUSTRALIA
FB RICE COPatent and Trade Mark Attorneys
Patents Act 1990
AGENSYS, INC.
COMPLETE SPECIFICATION
STANDARD PATENT
Invention Title.
Nucelic acids and corresponding proteins entitled 191PAD12(b)
useful in treatment and detection of cancer
The following statement is a full description of this invention including
the best method of performing it known to us:-
I
NUCLEIC ACIDS AND CORRESPONDING PROTEINS ENTITLED 191o00
0 P4D12(b) USEFUL IN TREATMENT AND DETECTION OF CANCER
This is a divisional of AU 2003228717, the entire contents of which are
incorporated herein by reference.
FIELD OF THE INVENTION
The invention described herein relates to genes and their encoded proteins,
termed 191P4D 12(b), expressed in certain cancers, and to diagnostic and therapeutic
methods and compositions useful in the management of cancers that express 191
SP4D12(b).
BACKGROUND OF THE INVENTION
00 Cancer is the second leading cause of human death next to coronary disease.
Worldwide, millions of people die from cancer every year. In the United States alone,
as reported by the American Cancer Society, cancer causes the death of well over a
half-million people annually, with over 1.2 million new cases diagnosed per year.While deaths from heart disease have been declining significantly, those resulting from
cancer generally are on the rise. In the early part of the next century, cancer is predicted
to become the leading cause of death.
Worldwide, several cancers stand out as the leading killers. In particular,
carcinomas of the lung, prostate, breast, colon, pancreas, and ovary represent the
primary causes of cancer death. These and virtually all other carcinomas share a
common lethal feature. With very few exceptions, metastatic disease from a carcinoma
is fatal. Moreover, even for those cancer patients who initially survive their primary
cancers, common experience has shown that their lives are dramatically altered. Many
cancer patients experience strong anxieties driven by the awareness of the potential for
recurrence or treatment failure. Many cancer patents experience physical debilitations
following treatment. Furthermore, many cancer patients experience a recurrence.
Worldwide, prostate cancer is the fourth most prevalent cancer in men. In North
America and Northern Europe, it is by far the most common cancer in males and is the
second leading cause of cancer death in men. In the United States alone, well over
30,000 men die annually of this disease-second only to lung cancer. Despite the
magnitude of these figures, there is still no effective treatment for metastatic prostate
cancer. Surgical prostatectomy, radiation therapy, hormone ablation therapy, surgical
castration and chemotherapy continue to be the main treatment modalities.
Unfortunately, these treatments are ineffective for many and are often associated with
undesirable consequences.
On the diagnostic front, the lack of a prostate tumor marker that can accurately00
detect early-stage, localized tumors remains a significant limitation in the diagnosis and
N, management of this disease. Although the serum prostate specific antigen (PSA) assay
has been a very useful tool, however its specificity and general utility is widely
regarded as lacking in several important respects.
00
Progress in identifying additional specific markers for prostate cancer has been improved by the generation ofprostate cancer xenografts that can recapitulate different stages of the disease In mice. The LAPC (Los Angeles Prostate
00 Cancer) xenografts are prostate cancer xenografts that have survived passage in severe combined immune deficient (SCID)mice and have exhibited the capacity to mimic the transition from androgen dependence to androgen independence (Klein etal., 1997, Nat. Med. 3:402). More recently Identified prostate cancer markers include PCTA-1 (Su et al., 1996, Proc. Natl.Acad. Sci. USA 93: 7252), prostate-specific membrane (PSM) antigen (Pinto et al., Clin Cancer Res 1996 Sep 2 1445-51), STEAP (Hubert, et al., Proc Natl Acad Sci U S A. 1999 Dec 7; 96(25): 14523-8) and prostate stem cell antigen (PSCA)
S (Reiter et al, 1998, Proc. Natl. Acad. Sci. USA 95: 1735).While previously identified markers such as PSA, PSM, PCTA and PSCA have facilitated efforts to diagnose and
treat prostate cancer, there is need for the identification of additional markers and therapeutic targets for prostate and relatedcancers in order to further improve diagnosis and therapy.Renal cell carcinoma (RCC) accounts for approximately 3 percent of adult malignancies. Once adenomas reach a diameterof 2 to 3 cm, malignant potential exists. In the adult, the two principal malignant renal tumors are renal cell adenocarcinoma
C0 and transitional cell carcinoma of the renal pelvis or ureter. The incidence of renal cell adenocarcinoma is estimated at morethan 29,000 cases In the United States, and more than 11,600 patients died of this disease in 1998. Transitional cell
C"1 carcinoma is less frequent, with an incidence of approximately 500 cases per year in the United States.Surgery has been the primary therapy for renal cell adenocarcinoma for many decades. Until recently, metastatic
disease has been refractory to any systemic therapy. With recent developments in systemic therapies, particularlyimmunotherapies, metastatic renal cell carcinoma may be approached aggressively in appropriate patients with a possibilityof durable responses. Nevertheless, there is a remaining need for effective therapies for these.patients.
Of all new cases of cancer in the United States, bladder cancer represents approximately 5 percent in men (fifthmost common neoplasm) and 3 percent in women (eighth most common neoplasm). The incidence is increasing slowly,.concurrent with an increasing older population. In 1998, there was an estimated 54,500 cases, including 39,500 in men and15,000 in women. The age-adjusted incidence in the United States is 32 per 100,000 for men and eight per 100,000 inwomen. The historic male/female ratio of 3:1 may be decreasing related to smoking patterns in women. There were anestimated 11,000 deaths from bladder cancer in 1998 (7,800 in men and 3,900 in women). Bladder cancer incidence andmortality strongly increase with age and will be an increasing problem as the population becomes more elderly.
Most bladder cancers recur in the bladder. Bladder cancer is managed with a combination of transurethralresection of the bladder (TUR) and intravesical chemotherapy or immunotherapy. The multifocal and recurrent nature ofbladder cancer points out the limitations of TUR. Most muscle-invasive cancers are not cured by TUR alone. Radicalcystectomy and urinary diversion is the most effective means to eliminate the cancer but carry an undeniable impact onurinary and sexual function. There continues to be a significant need for treatment modalities that are beneficial for bladdercancer patients.
An estimated 130,200 cases of colorectal cancer occurred in 2000 in the United States, including 93,800 cases ofcolon cancer and 36,400 of rectal cancer. Colorectal cancers are the third most common cancers in men and women.Incidence rates declined significantly during 1992-1996 per year). Research suggests that these declines have beendue to increased screening and polyp removal, preventing progression of polyps to invasive cancers. There were anestimated 56,300 deaths (47,700 from colon cancer, 8,600 from rectal cancer) in 2000, accounting for about 11% of all U.S.cancer deaths.
At present, surgery is the most common form of therapy for colorectal cancer, and for cancers that have notspread, it is frequently curative. Chemotherapy, or chemotherapy plus radiation, is given before or after surgery to mostpatients whose cancer has deeply perforated the bowel wall or has spread to the lymph nodes. A permanent colostomy
(creation of an abdominal opening for elimination of body wastes) is occasionally needed for colon cancer and is infrequently
required for rectal cancer. There continues to be a need for effective diagnostic and treatment modalities for colorectal
00cancer.
There were an estimated 164,100 new cases of lung and bronchial cancer in 2000, accounting for 14% of all U.S.
cancer diagnoses. The incidence rate of lung and bronchial cancer is declining significantly in men, from a high of 86.5 per
c 100,000 in 1984 to 70.0 in 1996. In the 1990s, the rate of increase among women began to slow. In 1996, the incidence
S rate in women was 42.3 per 100,000.
SLung and bronchial cancer caused an estimated 156,900 deaths in 2000, accounting for 28% of all cancer deaths.
During 1992-1996, mortality from lung cancer declined significantly among men per year) while rates for women were
still significantly increasing per year). Since 1987, more women have died each year of lung cancer than breast
cancer, which, for over 40 years, was the major cause of cancer death in women. Decreasing lung cancer incidence and
c.i mortality rates most likely resulted from decreased smoking rates over the previous 30 years; however, decreasing smoking
patterns among women lag behind those of men. Of concern, although the declines in adult tobacco use have slowed,
00 tobacco use in youth is increasing again.
Treatment options for lung and bronchial cancer are determined by the type and stage of the cancer and include
LC surgery, radiation therapy, and chemotherapy. For many localized cancers, surgery is usually the treatment of choice.
Because the disease has usually spread by the time it is discovered, radiation therapy and chemotherapy are often needed
in combination with surgery. Chemotherapy alone or combined with radiation is the treatment of choice for small cell lung
cancer; on this regimen, a large percentage of patients experience remission, which in some cases is long lasting. There is
however, an ongoing need for effective treatment and diagnostic approaches for lung and bronchial cancers.
An estimated 182,800 new invasive cases of breast cancer were expected to occur among women in the United
States during 2000. Additionally, about 1,400 new cases of breast cancer were expected to be diagnosed in men in 2000.
After increasing about 4% per year in the 1980s, breast cancer incidence rates in women have leveled off in the 1990s to
about 110.6 cases per 100,000.
In the U.S. alone, there were an estimated 41,200 deaths (40,800 women, 400 men) in 2000 due to breast cancer.
Breast cancer ranks second among cancer deaths in women. According to the most recent data, mortality rates declined
significantly during 1992-1996 with the largest decreases in younger women, both white and black. These decreases were
probably the result of earlier detection and improved treatment.
Taking into account the medical circumstances and the patient's preferences, treatment of breast cancer may
involve lumpectomy (local removal of the tumor) and removal of the lymph nodes under the arm; mastectomy (surgical
removal of the breast) and removal of the lymph nodes under the arm; radiation therapy; chemotherapy; or hormone therapy.
Often, two or more methods are used in combination. Numerous studies have shown that, for early stage disease, long-term
survival rates after lumpectomy plus radiotherapy are similar to survival rates after modified radical mastectomy. Significant
advances in reconstruction techniques provide several options for breast reconstruction after mastectomy. Recently, such
reconstruction has been done at the same time as the mastectomy.
Local excision of ductal carcinoma in situ (DCIS) with adequate amounts of surrounding normal breast tissue may
prevent the local recurrence of the DCIS. Radiation to the breast and/or tamoxifen may reduce the chance of DCIS occurring
in the remaining breast tissue. This is important because DCIS, if left untreated, may develop into invasive breast cancer.
Nevertheless, there are serious-side effects or sequelae to these treatments. There is, therefore, a need for efficacious
breast cancer treatments.
There were an estimated 23,100 new cases of ovarian cancer in the United States in 2000. It accounts for 4% of
all cancers among women and ranks second among gynecologic cancers. During 1992-1996, ovan'an cancer incidence
rates were significantly declining. Consequent to ovarian cancer, there were an estimated 14,000 deaths in 2000. Ovarian
cancer causes more deaths than any other cancer of the female reproductive system.
0 Surgery, radiation therapy, and chemotherapy are treatment options for ovarian cancer. Surgery usually includes
the removal of one or both ovaries, the fallopian tubes (salpingo-oophorectomy), and the uterus (hysterectomy). In some
S very early tumors, only the involved ovary will be removed, especially in young women who wish to have children. InS advanced disease, an attempt is made to remove all intra-abdomlnal disease to enhance the effect of chemotherapy. There
continues to be an important need for effective treatment options for ovarian cancer.
SThere were an estimated 28,300 new cases of pancreatic cancer in the United States in 2000. Over the past
years, rates of pancreatic cancer have declined in men. Rates among women have remained approximately constant but
S may be beginning to decline. Pancreatic cancer caused an estimated 28,200 deaths in 2000 in the United States. Over the
past 20 years, there has been a slight but significant decrease In mortality rates among men (about-0.9% per year) while
L| rates have increased slightly among women.
SSurgery, radiation therapy, and chemotherapy are treatment options for pancreatic cancer. These treatment
00 options can extend survival and/or relieve symptoms In many patients but are not likely to produce a cure for most. There is
a significant need for additional therapeutic and diagnostic options for pancreatic cancer.
SUMMARY OF THE INVENTION
The present invention relates to a gene, designated 191P4D12(b), that has now been found to be over-expressed
in the cancer(s) listed in Table I. Northern blot expression analysis of 191P4D12(b) gene expression in normal tissues
shows a restricted expression pattern in adult tissues. The nucleotide (Figure 2) and amino acid (Figure 2, and Figure 3)
sequences of 191P4D12(b) are provided. The tissue-related profile of 191P4D12(b) in normal adult tissues, combined with
the over-expression observed in the tissues listed in Table I, shows that 191P4D12(b) is aberrantly over-expressed in at least
some cancers, and thus serves as a useful diagnostic, prophylactic, prognostic, and/or therapeutic target for cancers of the
tissue(s) such as those listed in Table I.
The invention provides polynucleotides corresponding or complementary to all or part of the 191P4D12(b) genes,
mRNAs, and/or coding sequences, preferably in isolated form, including polynucleotides encoding 191P4D12(b)-related
proteins and fragments of 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or more than
contiguous amino acids; at least 30, 35, 40, 45, 50, 55, 60, 65, 70, 80, 85, 90, 95, 100 or more than 100 contiguous amino
acids of a 191P4D12(b)-related protein, as well as the peptides/proteins themselves; DNA, RNA, DNA/RNA hybrids, and
related molecules, polynucleotides or oligonucleotides complementary or having at least a 90% homology to the
191 P4D12(b) genes or mRNA sequences or parts thereof, and polynucleotides or oligonucleotides that hybridize to the
191P4D12(b) genes, mRNAs, or to 191P4D12(b)-encoding polynucleotides. Also provided are means for isolating cDNAs and
the genes encoding 191P4D12(b). Recombinant DNA molecules containing 191P4D12(b) polynudeotides, cells transformed or
transduced with such molecules, and host-vector systems for the expression of 191P4D12(b) gene products are also provided.
The invention further provides antibodies that bind to 191P4D12(b) proteins and polypeptide fragments thereof, including
polyclonal and monoclonal antibodies, murine and other mammalian antibodies, chimeric antibodies, humanized and fully
human antibodies, and antibodies labeled with a detectable marker or therapeutic agent. In certain embodiments, there is a
proviso that the entire nucleic acid sequence of Figure 2 is not encoded and/or the entire amino acid sequence of Figure 2 is
not prepared. In certain embodimenls, the entire nucleic acid sequence of Figure 2 is encoded and/or the entire amino acid
sequence of Figure 2 is prepared, either of which are in respective human unit dose forms.
The invention further provides methods for detecting the presence and status of 191 P4D12(b) polynucleotides and
proteins in various biological samples, as well as methods for identifying cells that express 191P4D12(b). A typical embodiment of
this invention provides methods for monitoring 191P4012(b) gene products in a tissue or hematology sample having or suspected
of having some form of growth dysregulation such as cancer.0 0 The invention further provides various immunogenic or therapeutic compositions and strategies for treating cancers
that express 191P4D12(b) such as cancers of tissues listed in Table I, including therapies aimed at inhibiting the
transcription, translation, processing or function of 191P4D12(b) as well as cancer vaccines. In one aspect, the invention
provides compositions, and methods comprising them, for treating a cancer that expresses 191P4D12(b) in a human subject
wherein the composition comprises a carrier suitable for human use and a human unit dose of one or more than one agent
that inhibits the production or function of 191P4D12(b). Preferably, the carrier is a uniquely human carrier. In another aspect
of the invention, the agent Is a moiety that is immunoreactive with 191P4D12(b) protein. Non-limiting examples of such
moieties include, but are not limited to, antibodies (such as single chain, monoclonal, polyclonal, humanized, chimeric, or
human antibodies), functional equivalents thereof (whether naturally occurring or synthetic), and combinations thereof. The
S antibodies can be conjugated to a diagnostic or therapeutic moiety. In another aspect, the agent is a small molecule as
defined herein.
00 In another aspect, the agent comprises one or more than one peptide which comprises a cytotoxic T lymphocyte
(CTL) epitope that binds an HLA class I molecule in a human to elicit a CTL response to 191P4D12(b) and/or one or more
ri than one peptide which comprises a helper T lymphocyte (HTL) epitope which binds an HLA class II molecule in a human to
elicit an HTL response. The peptides of the invention may be on the same or on one or more separate polypeptide
molecules. In a further aspect of the invention, the agent comprises one or more than one nucleic acid molecule that
expresses one or more than one of the CTL or HTL response stimulating peptides as described above. In yet another
aspect of the invention, the one or more than one nucleic acid molecule may express a moiety that is immunologically
reactive with 191P4D12(b) as described above. The one or more than one nucleic acid molecule may also be, or encodes, a
molecule that inhibits production of 191P4D12(b). Non-limiting examples of such molecules include, but are not limited to,
those complementary to a nucleotide sequence essential for production of 191P4D12(b) antisense sequences or
molecules that form a triple helix with a nucleotide double helix essential for 191P4D12(b) production) or a ribozyme effective
to lyse 191P4D12(b) mRNA.
Note that to determine the starting position of any peptide set forth in Tables VIII-XXI and XXII to XLIX (collectively
HLA Peptide Tables) respective to its parental protein, variant 1, variant 2, etc., reference is made to three factors: the
particular variant, the length of the peptide in an HLA Peptide Table, and the Search Peptides in Table VII. Generally, a
unique Search Peptide is used to obtain HLA peptides of a particular for a particular variant The position of each Search
Peptide relative to its respective parent molecule is listed in Table VII. Accordingly, if a Search Peptide begins at position
one must add the value "X 1" to each position in Tables VIII-XXI and XXII to XLIX to obtain the actual position of the
HLA peptides in their parental molecule. For example, if a particular Search Peptide begins at position 150 of its parental
molecule, one must add 150 1, 149 to each HLA peptide amino acid position to calculate the position of that amino acid
in the parent molecule.
One embodiment of the invention comprises an HLA peptide, that occurs at least twice in Tables VIII-XXI and XXII
to XLIX collectively, or an oligonucleotide that encodes the HLA peptide. Another embodiment of the invention comprises an
HLA peptide that occurs at least once in Tables VIII-XXI and at least once in tables XXII to XLIX, or an oligonucleotide that
encodes the HLA peptide.
Another embodiment of the invention is antibody epitopes, which comprise a peptide regions, or an oligonucleotide
encoding the peptide region, that has one two, three, four, or five of the following characteristics:
i) a peptide region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment upto the full length of that protein in Figure 3, that Includes an amino acid position having a value equal to or greater than
00 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Hydrophilicity profile of Figure
0 ii) a peptide region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment upto the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or less than 0.5, 0.4,
c 0.3, 0.2, 0.1, or having a value equal to 0.0, in the Hydropathicity profile of Figure 6;
iii) a peptide region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number Increment upto the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or greater than 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Percent Accessible Residues profile of Figure 7;
iv) a peptide region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment upto the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or greater than
0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Average Flexibility profile of Figure 8; orSv) a peptide region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment up
00 to the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or greater than 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Beta-turn profile of Figure 9.
BRIEF DESCRIPTION OF THE FIGURESFigure 1. The 191P4D12(b) SSH sequence of 223 nucleotides.
Figure 2. A) The cDNA and amino acid sequence of 191P4D12(b) variant 1 (also called "191P4012(b) v.1" or
"191P4D12(b) variant is shown in Figure 2A. The start methionine is underlined. The open reading frame extends from
nucleic acid 264-1796 including the stop codon.
B) The cDNA and amino acid sequence of 191P4D12(b) variant 2 (also called "191P4D12(b) is shown in
Figure 28. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
C) The cDNA and amino acid sequence of 191P4D12(b) variant 3 (also called "191P4D12(b) is shown in
Figure 2C. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
D) The cDNA and amino acid sequence of 191P4D12(b) variant 4 (also called "191P4D12(b) is shown in
Figure 2D. The codon for the start methionine Is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
E) The cDNA and amino acid sequence of 191P4D12(b) variant5 (also called "191P4D12(b) is shown in
Figure 2E. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
F) The cDNA and amino acid sequence of 191P4D12(b) variant 6 (also called "191P4D12(b) is shown in
Figure 2F. The codon for the start methlonine is underlined. The open reading frame extends from nucleic acid 789-1676
including the stop codon.
G) The cDNA and amino acid sequence of 191P4D12(b) variant 7 (also called "191P4D12(b) is shown in
Figure 2G. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1721
including the stop codon.
H) The cDNA and amino acid sequence of 191P4D12(b) variant8 (also called "191P4D12(b) Is shown in
Figure 2H. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
I) The cDNA and amino acid sequence of 191P4D12(b) variant 9 (also called "191P4D12(b) is shown in
Figure 21. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 708-1121
including the stop codon.
O J) The cDNA and amino acid sequence of 191P4D12(b) variant 10 (also called "191P4D12(b) v.10") is shown in
Figure 2J. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
K) The cDNA and amino acid sequence of 191P4012(b) variant 11 (also called "191P4D12(b) v.11") is shown in
Figure 2K. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
L) The cDNA and amino acid sequence of 191P4D12(b) variant 12 (also called "191P4D12(b) v.12") is shown in
Figure 2L. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1796
including the stop codon.
M) The cDNA and amino acid sequence of 191P4D12(b) variant 13 (also called "191P4D12(b) v.13") is shown in
00 Figure 2M. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 264-1799
including the stop codon.
0i N) The cDNA and amino acid sequence of 191P4D12(b) variant 14 (also called "191P4D12(b) v.14") is shown in
Figure 2N. The codon for the start methionine is underlined. The open reading frame extends from nucleic acid 708-1121
including the stop codon.
Figure 3.
A) The amino acid sequence of 191P4D12(b) v.1 is shown in Figure 3A; it has 510 amino acids.
B) The amino acid sequence of 191P4D12(b) v.2 is shown in Figure 3B; it has 510 amino acids.
C) The amino acid sequence of 191P4D12(b) v.6 is shown in Figure 3C; it has 295 amino acids.
D) The amino acid sequence of 191P4D12(b) v.7 is shown in Figure 3D; it has 485 amino acids.
E) The amino acid sequence of 191P4D12(b) v.10 is shown in Figure 3E; it has 510 amino acids.
F) The amino acid sequence of 191P4D12(b) v.11 is shown in Figure 3F; it has 510 amino acids.
G) The amino acid sequence of 191P4D12(b) v.12 is shown in Figure 3G; it has 510 amino acids.
H) The amino acid sequence of 191P4D12(b) v.13 is shown in Figure 3H; it has 511 amino acids.
I) The amino acid sequence of 191P4D12(b) v.9 is shown in Figure 31; it has 137 amino acids.
J) The amino acid sequence of 191P4D12(b) v.14 is shown in Figure 3J; it has 137 amino acids.
As used herein, a reference to 191P4D12(b) includes all variants thereof, including those shown in Figures 2, 3,
and 11, unless the context clearly indicates otherwise.
Figure 4. Alignment of 191P4D12(b) with known homologs. Figure 4(A) Alignment of 191P4D12(b)with human Ig
superfamily receptor LNIR (gi 14714574). Figure 4(B) Alignment of 191P4D12(b) with mouse nectin 4 (gi 18874521).
Figure 5. Hydrophilicity amino acid profile of 191P4012(b)v.1, v.7, and v.9 determined by computer algorithm
sequence analysis using the method of Hopp and Woods (Hopp Woods 1981. Proc. Natl. Acad. Sci. U.S.A.
78:3824-3828) accessed on the Protscale website located on the World Wide Web at (expasy.ch/cgi-bin/protscale.pl)
through the ExPasy molecular biology server.
Figure 6. Hydropathicity amino acid profile of 191P4D12(b)v.1, v.7, and v.9 determined by computer algorithm
sequence analysis using the method of Kyte and Doolittle (Kyte Doolittle 1982. J. Mol. Biol. 157:105-132) accessed
on the ProtScale website located on the World Wide Web at (.expasy.ch/cgi-bin/protscale.pl) through the ExPasy molecular
biology server.
Figure 7. Percent accessible residues amino acid profile of 191P4D12(b)v.1, v.7, and v.9 determined by computeralgorithm sequence analysis using the method of Janin (Janin 1979 Nature 277:491-492) accessed on the ProtScalewebsite located on the World Wide Web at (.expasy.ch/cgi-bln/protscale.pl) through the ExPasy molecular biology server.
Figure 8. Average flexibility amino acid profile of 191P4012(b)v.1, v.7, and v.9 determined by computer algorithmsequence analysis using the method of Bhaskaran and Ponnuswamy (Bhaskaran and Ponnuswamy 1988. Int. J.Pept. Protein Res. 32:242-255) accessed on the ProtScale website located on the World Wide Web at (.expasy.ch/cgi-bin/protscale.pl) through the ExPasy molecular biology server.
Figure 9. Beta-turn amino acid profile of 191P4D12(b)v.1, v.7, and v.9 determined by computer algorithmsequence analysis using the method of Deleage and Roux (Deleage, Roux B. 1987 Protein Engineering 1:289-294)
S accessed on the ProtScale website located on the World Wide Web at (.expasy.ch/cgi-bin/protscale.pl) through the ExPasymolecular biology server.
Figure 10. Schematic alignment of SNP variants of 191P4D12(b). Variants 191P4D12(b) v.2 through v.5 and C(1 through v.12 are variants with single nucleotlde differences. Compared with v.1, v.13 had an insertion of three bases (GCA)00 between 1262 and1263 and added one amino acid to the protein. Variant v.14 was a SNP variant of transcript variant
v.9, corresponding to the SNP at 2688 of v.1. Though these SNP variants were shown separately, they could also occur inany combinations and in any transcript variants, as shown in Fig. 12, that contained the base pairs. Numbers correspond tothose of 191P4D12(b) v.1. Black box shows the same sequence as 191P4D12(b) v.1. SNPs are indicated above the box.
Figure 11. Schematic alignment of protein variants of 191P4D12(b). Protein variants correspond to nucleotidevariants. Nucleotide variants 191P4D12(b) v.3, v.4, v.5 and v.8 coded for the same protein as v.1. Nucleotide variants191P4D12(b) v.6, v.7, v.8 and v.9 were splice variants of v.1, as shown in Figure 12. Variant v.9 translated to a totallydifferent protein than other variants, with two isoforms that different from each other by one amino acid at 64: A or D. Variantv.13 had an insertion of one amino acid at 334. Single amino acid differences were indicated above the boxes. Blackboxes represent the same sequence as 191P4D12(b) v.1. Numbers underneath the box correspond to 191P4D12(b) v.1.
Figure 12. Exon compositions of transcript variants of 191P4D12(b). Variant 191P4D12(b) v.6, v.7, v.8 and v.9 aretranscript variants of v.1. Variants v.6, v.7 and v.8 spliced out 202-321, 1497-1571 and 2951-3013 of v.1, respectively.Variant v.9 was part of the last exon of v.1. The order of the potential exons on the human genome is shown at the bottom.Poly A tails were not shown in the figure. Ends of exons are shown above the boxes. Numbers in undemeath the boxescorrespond to those of 191P4D12(b) v.1. Lengths of introns and exons are not proportional.
Figure 13. Secondary structure and transmembrane domains prediction for 191P4D12(b) protein variants.The secondary structure of 191P4D12(b) protein variants 1 (SEQ ID NO: 127), v6 (SEQ ID NO: 128), v7 (SEQ ID NO:129), and v9 (SEQ ID NO: 130) (Figures 13A-D respectively) were predicted using the HNN Hierarchical Neural Networkmethod (Guermeur, 1997, http:l/pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa n.html), accessed from the ExPasymolecular biology server located on the World Wide Web at (.expasy.ch/tools/). This method predicts the presence andlocation of alpha helices, extended strands, and random coils from the primary protein sequence.
The percent of the protein in a given secondary structure is also listed. Figures 13E, 13G, 131,13K: Schematicrepresentations of the probability of existence of transmembrane regions and orientation of 191P4D12(b) variants 1, 6, 7,and 9, respectively, based on the TMpred algorithm of Hofmann and Stoffel which utilizes TMBASE Hofmann, W. Stoffel.TMBASE A database of membrane spanning protein segments Biol. Chem. Hoppe-Seyler 374:166, 1993). Figures 13F,13H, 13J, 13L. Schematic representations of the probability of the existence of transmembrane regions and the extracellularand intracellular orientation of 191P4D12(b) variants 1, 6, 7, and 9, respectively, based on the TMHMM algorithm ofSonnhammer, von Heijne, and Krogh (Erik L.L. Sonnhammer, Gunnar von Heijne, and Anders Krogh: A hidden Markbvmodel for predicting transmembrane helices in protein sequences. In Proc. of Sixth Int. Conf. on Intelligent Systems for
Molecular Biology, p 175-182 Ed J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen Menlo Park, CA:
AAAI Press, 1998). The TMpred and TMHMM algorithms are accessed from the ExPasy molecular biology server located on000 the World Wide Web at (.expasy.ch/tools/).
Figure 14. 191P4D12(b) Expression by RT-PCR. First strand cDNA was prepared from vital pool 1 (liver, lung
and kidney), vital pool 2 (pancreas, colon and stomach), normal kidney, prostate cancer pool, bladder cancer pool, colon
cancer pool, lung cancer pool, breast cancer pool and cancer metastasis pool; prostate cancer metastasis to lymph node,
prostate cancer pool, bladder cancer pool, kidney cancer pool, colon cancer pool, lung cancer pool, ovary cancer pool,
breast cancer pool, cancer metastasis pool, pancreas cancer pool, and LAPC prostate xenograft pool. Normalization was
performed by PCR using primers to actin and GAPDH. Semi-quantitative PCR, using primers to 191P4D12(b), was
S performed at 26 and 30 cycles of amplification. In results show strong expression of 191P4D12(b) in bladder cancer
pool. Expression of 191P4D12(b) was also detected in prostate cancer pool, colon cancer pool, lung cancer pool, breast
CN cancer pool and cancer metastasis pool but very weakly in vital pool 1 and vital pool 2. In results show strong expression
of 191P4D12(b) in prostate, bladder, kidney, colon, lung, ovary, breast, cancer metastasis, and pancreas cancer specimens.0 0 Figure 15. Expression of 191P4D12(b) in normal tissues. Two multiple tissue northern blots (Clontech) both with
2 ug of mRNA/Iane were probed with the 191P4D12(b) sequence. Size standards in kilobases (kb) are indicated on the side.
Results show expression of an approximately 4kb transcript In placenta and very weakly in prostate but not in any other
normal tissue tested. A smaller 191P4D12(b) transcript of approximately 2.5kb was detected in heart and skeletal muscle.
Figure 16. Expression of 191P4D12(b) In Patient Cancer Specimens and Normal Tissues. RNA was extracted
from a pool of 3 bladder cancer patient specimens, as well as from normal prostate normal bladder normal kidney
normal colon normal lung normal breast (NBr), normal ovary and normal pancreas (NPa). Northern
blot with 10 ug of total RNA/lane was probed with 191P4D12(b) SSH sequence. Size standards in kilobases (kb) are
indicated on the side. The 191P4D12(b) transcript was detected in the bladder cancer specimens, but not in the normal
tissues tested.
Figure 17. Expression of 191P4D12(b) in Bladder Cancer Patient Specimens. RNA was extracted from bladder
cancer cell lines normal bladder and bladder cancer patient tumors Northern blots with 10 ug of total RNA
were probed with the 191P4D12(b) SSH fragment. Size standards in kilobases are on the side. Results show expression of
the approximately 4kb 191P4012(b) transcript in the bladder tumor tissues but not in normal bladder. A smaller transcript
was detected in the HT1197 cell line but not in the other cancer cell lines tested.
Figure 18. Expression of 191P4D12(b) in Prostate Cancer Xenografts. RNA was extracted from normal prostate,
and from the prostate cancer xenografts LAPC-4AD, LAPC-4AI, LAPC-9AD, and LAPC-9AI. Northern blots with 10 ug of
total RNA were probed with the 191P4D12(b) SSH fragment. Size standards in kilobases are on the side. Results show
expression of the approximately 4kb 191P4D12(b) transcript in all the LAPC xenograft tissues but not in normal prostate.
Figure 19. Expression of 191P4D12(b) in Cervical Cancer Patient Specimens. RNA was extracted from normal
cervix, Hela cancer cell line, and 3 cervix cancer patient tumors Northern blots with 10 ug of total RNA were probed with
the 191P4D12(b) SSH fragment. Size standards in kilobases are on the side. Results show expression of the approximately
4kb 191P4D12(b) transcript in 2 out of 3 cervix tumors but not in normal cervix nor in the Hela cell line.
Figure 20. Expression of 191P4D12(b) in Lung Cancer Patient Specimens. RNA was extracted from lung cancer
cell lines normal lung bladder cancer patient tumors and normal adjacent tissue (Nat). Northern blots with
ug of total RNA were probed with the 191P4D12(b). Size standards in kilobases are on the side. Results show expression
of the approximately 4kb 191P4D12(b) transcript in the lung tumor tissues but not in normal lung nor in the cell lines tested.
Figure 21. Figure 21A. 191P4D12(b) Expression In Lung Cancer. First strand cDNA was prepared from a panel
of lung cancer specimens. Normalization was performed by PCR using primers to actin. Semi-quantitative PCR, using
primers to 191P4D12(b) SSH fragment, was performed at 26 and 30 cycles of amplification. Expression level was recorded
as 0 no expression detected; 1 weak expression, 2 moderate expression; 3 strong expression. Results show00C expression of 191P4D12(b) in 97% of the 31 lung cancer patient specimens tested. Figure 21B. 191P4D12(b) Expression
in Bladder Cancer. First strand cDNA was prepared from a panel of bladder cancer specimens. Normalization was
Sperformed by PCR using primers to actin. Semi-quantitative PCR, using primers to 191P4D12(b) SSH fragment, was
performed at 26 and 30 cycles of amplification. Expression level was recorded as 0 no expression detected; 1 weak
expression, 2 moderate expression; 3 strong expression. Results show expression of 191P4D12(b) in 94% of the 18
Sbladder cancer patient specimens tested. Figure 21C. 191P4012(b) Expression in Prostate Cancer. First strand cDNA was
prepared from a panel of prostate cancer specimens, and four LAPC prostate cancer xenografts. Normalization was
performed by PCR using primers to actin. Semi-quantitative PCR, using primers to 191P4D12(b) SSH fragment, was
performed at 26 and 30 cycles of amplification. Expression level was recorded as 0 no expression detected; 1 weak
CK1 expression, 2 moderate expression; 3 strong expression. Results show expression of 191P4D12(b) in 100% of the
S'prostate cancer patient specimens tested, and in all 4 prostate cancer xenografts. Figure 21D. 191P4D12(b) Expression in
00 Colon Cancer. First strand cDNA was prepared from a panel of colon cancer specimens. Normalization was performed by
0 PCR using primers to actin. Semi-quantitative PCR, using primers to 191P4D12(b) SSH fragment, was performed at 26 and
cycles of amplification. Expression level was recorded as 0 no expression detected; 1 weak expression, 2
moderate expression; 3 strong expression. Results show expression of 191P4D12(b) in 100% of the 22 colon cancer
patient specimens tested. Figure 21E. 191P4D12(b) Expression in Uterus Cancer. First strand cDNA was prepared from a
panel of uterus cancer specimens. Normalization was performed by PCR using primers to actin. Semi-quantitative PCR,
using primers to 191P4D12(b) SSH fragment, was performed at 26 and 30 cycles of amplification. Expression level was
recorded as 0 no expression detected; 1 weak expression, 2 moderate expression; 3 strong expression. Results
show expression of 191P4D12(b) in 100% of the 12 uterus cancer patient specimens tested. Figure 21F. 191P4D12(b)
Expression in Cervical Cancer. First strand cDNA was prepared from a panel of cervix cancer specimens. Normalization
was performed by PCR using primers to actin. Semi-quantitative PCR, using primers to 191P4D12(b) SSH fragment, was
performed at 26 and 30 cycles of amplification. Expression level was recorded as 0 no expression detected; 1 weak
expression, 2 moderate expression; 3 strong expression. Results show expression of 191P4D12(b) in 100% of the 14
cervix cancer patient specimens tested.
Figure 22. Transient Expression of 191P4D12(b) in Transfected 293T Cells. 293T cells were transfected with
either 191P4D12(b) .pTag5, 191P4D12(b).pcDNA3.1/mychis or pcDNA3.1/mychis vector control. Forty hours later, cell
lysates and supernatant were collected. Samples were run on an SDS-PAGE acrylamide gel, blotted and stained with anti-
his antibody. The blot was developed using the ECL chemiluminescence kit and visualized by autoradiography. Results
show expression from 191P4D12(b).pTag5 plasmid of 191P4D12(b) extracellular domain in the lysate (Lane 2) and secretion
in the culture supernatant (Lane Also, expression of 191P4D12(b) was detected from in the lysates of
191P4D12(b).pcDNA3.1/mychis transfected cells (Lane but not from the control pcDNA3.1/mychis (Lane 4).
Figure 23. Expression of 191P4012(b) in Transduced Cells Following Retroviral Gene Transfer. 3T3 cells were
transduced with the pSRa retroviral vector encoding the 191P4D12(b) gene. Following selection with neomycin, the cells
were expanded and RNA was extracted. Northern blot with 10 ug of total RNA/lane was probed with the 191P4D12(b) SSH
sequence. Size standards in kilobases (kb) are indicated on the side. Results show expression of the 191P4D12(b)
transcript driven from the retroviral LTR, which migrates slower than the endogenous 4 kb 191P4D12(b) transcript detected
in the positive control LAPC-4AD.
DETAILED DESCRIPTION OF THE INVENTIONOutline of Sections
Definitions
II.) 191P4D12(b) Polynucleotides
00 II.A.) Uses of 191P4D12(b) Polynucleotides
II.A.1.) Monitoring of Genetic Abnormalities
ll.A.2.) Antisense Embodiments
II.A.3.) Primers and Primer Pairs
II.A.4.) Isolation of 191P4D12(b)-Encoding Nucleic Acid Molecules
Recombinant Nucleic Acid Molecules and Host-Vector Systems
II1.) 191P4D12(b)-related Proteins
III.A.) Motif-bearing Protein Embodiments
III.B.) Expression of 191P4D12(b)-related Proteins
SIII.C.) Modifications of 191P4D12(b)-related Proteins
III.D.) Uses of 191P4D12(b)-related Proteins
00 IV.) 191P4D12(b) Antibodies
191P4D12(b) Cellular Immune Responses
C VI.) 191P4D12(b) Transgenic Animals
VII.) Methods for the Detection of 191P4D12(b)
VIII.) Methods for Monitoring the Status of 191P4D12(b)-related Genes and Their Products
IX.) Identification of Molecules That Interact With 191P4D12(b)
Therapeutic Methods and Compositions
Anti-Cancer Vaccines
XB.) 191P4D12(b) as a Target for Antibody-Based Therapy
XC.) 191P4D12(b) as a Target for Cellular Immune Responses
X.C.1. Minigene Vaccines
X.C.2. Combinations of CTL Peptides with Helper Peptides
X.C.3. Combinations of CTL Peptides with T Cell Priming Agents
X.C.4. Vaccine Compositions Comprising DC Pulsed with CTL and/or HTL Peptides
Adoptive Immunotherapy
Administration of Vaccines for Therapeutic or Prophylactic Purposes
XI.) Diagnostic and Prognostic Embodiments of 191P4D12(b).
XII.) Inhibition of 191P4D12(b) Protein Function
XII.A.) Inhibition of 191P4D12(b) With Intracellular Antibodies
XII.B.) Inhibition of 191P4D12(b) with Recombinant Proteins
XII.C.) Inhibition of 191P4D12(b) Transcription or Translation
XII.D.) General Considerations for Therapeutic Strategies
XIII.) Identification, Characterization and Use of Modulators of 191P4D12(b)
XIV.) KITSIArticles of Manufacture
Definitions:
Unless otherwise defined, all terms of art, notations and other scientific terms or terminology used herein are
intended to have the meanings commonly understood by those of skill in the art to which this invention pertains. In some
cases, terms with commonly understood meanings are defined herein for clarity and/or for ready reference, and the inclusion
of such definitions herein should not necessarily be construed to represent a substantial difference over what is generally
understood in the art. Many of the techniques and procedures described or referenced herein are well understood and0 0 commonly employed using conventional methodology by those skilled in the art, such as, for example, the widely utilized
0 molecular cloning methodologies described in Sambrook et Molecular Cloning: A Laboratory Manual 2nd. edition (1989)
SCold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. As appropriate, procedures involving the use of
S commercially available kits and reagents are generally carried out in accordance with manufacturer defined protocols and/or
parameters unless otherwise noted.S The terms "advanced prostate cancer", "locally advanced prostate cancer", "advanced disease" and "locally
advanced disease" mean prostate cancers that have extended through the prostate capsule, and are meant to Include stage
C disease under the American Urological Association (AUA) system, stage C1 C2 disease under the Whitmore-Jewett
system, and stage T3 T4 and N+ disease under the TNM (tumor, node, metastasis) system. In general, surgery is not
recommended for patients with locally advanced disease, and these patients have substantially less favorable outcomes
0 compared to patients having clinically localized (organ-confined) prostate cancer. Locally advanced disease is clinically
00 identified by palpable evidence of induration beyond the lateral border of the prostate, or asymmetry or Induration above the
Sprostate base. Locally advanced prostate cancer is presently diagnosed pathologically following radical prostatectomy if thetumor invades or penetrates the prostatic capsule, extends into the surgical margin, or invades the seminal vesicles.
"Altering the native glycosylation pattern" is intended for purposes herein to mean deleting one or more
carbohydrate moieties found in native sequence 191P4D12(b) (either by removing the underlying glycosylation site or by
deleting the glycosylation by chemical and/or enzymatic means), and/or adding one or more glycosylation sites that are not
present in the native sequence 191P4D12(b). In addition, the phrase includes qualitative changes in the glycosylation of the
native proteins, involving a change in the nature and proportions of the various carbohydrate moieties present.
The term "analog" refers to a molecule which is structurally similar or shares similar or corresponding attributes with
another molecule a 191 P4D12(b)-related protein). For example, an analog of a 191 P4D12(b) protein can be specifically
bound by an antibody or T cell that specifically binds to 191 P4D12(b).
The term "antibody" is used in the broadest sense. Therefore, an "antibody" can be naturally occurring or man-made
such as monoclonal antibodies produced by conventional hybridoma technology. Anti-191P4D12(b) antibodies comprise
monoclonal and polyclonal antibodies as well as fragments containing the antigen-binding domain and/or one or more
complementarity determining regions of these antibodies.
An 'antibody fragment" Is defined as at least a portion of the variable region of the immunoglobulin molecule that
binds to its target, the antigen-binding region. In one embodiment it specifically covers single anti-191P4D12(b) antibodies
and clones thereof (including agonist, antagonist and neutralizing antibodies) and anti-191 P4D12(b) antibody compositions with
polyepitopic specificity.
The term "codon optimized sequences" refers to nucleotide sequences that have been optimized for a particular
host species by replacing any codons having a usage frequency of less than about 20%. Nucleotide sequences that have
been optimized for expression in a given host species by elimination of spurious polyadenylation sequences, elimination of
exon/intron splicing signals, elimination of transposon-like repeats and/or optimization of GC content in addition to codon
optimization are referred to herein as an "expression enhanced sequences."
A "combinatorial library" is a collection of diverse chemical compounds generated by either chemical synthesis or
biological synthesis by combining a number of chemical "building blocks" such as reagents. For example, a linear
combinatorial chemical library, such as a polypeptide mutein) library, is formed by combining a set of chemical building
blocks called amino acids in every possible way for a given compound length the number of amino acids in a
polypeptide compound). Numerous chemical compounds are synthesized through such combinatorial mixing of chemical
building blocks (Gallop et al., J. Med. Chem. 37(9): 1233-1251 (1994)).
O Preparation and screening of combinatorial libraries is well known to those of skill in the art. Such combinatorial
chemical libraries include, but are not limited to, peptide libraries (see, U.S. Patent No. 5,010,175, Furka, Pept. Prot.
Res. 37:487-493 (1991), Houghton et al., Nature, 354:84-88 (1991)), peptolds (PCT Publication No WO 91/19735), encoded
t peptides (PCT Publication WO 93/20242), random bio- oligomers (PCT Publication WO 92/00091), benzodiazepines (U.S.
Pat. No. 5,288,514), diversomers such as hydantoins, benzodiazepines and dipeptides (Hobbs et al., Proc. Nat. Acad. Sci.
USA 90:6909-6913 (1993)), vinylogous polypeptides (Hagihara et al., J. Amer. Chem. Soc. 114:6568 (1992)), nonpeptidal
peptidomimetics with a Beta-D-Glucose scaffolding (Hirschmann et al., J. Amer. Chem. Soc. 114:9217-9218 (1992)),
analogous organic syntheses of small compound libraries (Chen et al., J. Amer. Chem. Soc. 116:2661 (1994)),
oligocarbamates (Cho, et al., Science 261:1303 (1993)), and/or peptidyl phosphonates (Campbell et al., J. Org. Chem.
59:658 (1994)). See, generally, Gordon et al., J. Med. Chem. 37:1385 (1994), nucleic acid libraries (see, Stratagene,
Corp.), peptide nucleic acid libraries (see, U.S. Patent 5,539,083), antibody libraries (see, Vaughn et al., Nature
00 Biotechnology 14(3): 309-314 (1996), and PCT/US96/10287), carbohydrate libraries (see, Uang et al., Science
274:1520-1522 (1996), and U.S. Patent No. 5,593,853), and small organic molecule libraries (see, benzodiazepines,
Baum, C&EN, Jan 18, page 33 (1993); isoprenoids, U.S. Patent No. 5,569,588; thlazolidinones and metathiazanones, U.S.
Patent No. 5,549,974; pyrrolidines, U.S. Patent Nos. 5,525,735 and 5,519,134; morpholino compounds, U.S. Patent No.
5,506, 337; benzodiazepines, U.S. Patent No. 5,288,514; and the like).
Devices for the preparation of combinatorial libraries are commercially available (see, 357 NIPS, 390 NIPS,
Advanced Chem Tech, Louisville KY; Symphony, Rainin, Wobum, MA; 433A, Applied Biosystems, Foster City, CA; 9050,
Plus, Millipore, Bedford, NIA). A number of well-known robotic systems have also been developed for solution phase
chemistries. These systems Include automated workstations such as the automated synthesis apparatus developed by
Takeda Chemical Industries, LTD. (Osaka, Japan) and many robotic systems utilizing robotic arms (Zymate H, Zymark
Corporation, Hopkinton, Mass.; Orca, Hewlett-Packard, Palo Alto, Calif.), which mimic the manual synthetic operations
performed by a chemist. Any of the above devices are suitable for use with the present invention. The nature and
implementation of modifications to these devices (if any) so that they can operate as discussed herein will be apparent to
persons skilled in the relevant art. In addition, numerous combinatorial libraries are themselves commercially available (see,
ComGenex, Princeton, NJ; Asinex, Moscow, RU; Tripos, Inc., St. Louis, MO; ChemStar, Ltd, Moscow, RU; 3D
Pharmaceuticals, Exton, PA; Martek Biosciences, Columbia, MD; etc.).
The term "cytotoxic agent" refers to a substance that inhibits or prevents the expression activity of cells, function of
cells and/or causes destruction of cells. The term is intended to include radioactive isotopes chemotherapeutic agents, and
toxins such as small molecule toxins or enzymatically active toxins of bacterial, fungal, plant or animal origin, including
fragments and/or variants thereof. Examples of cytotoxic agents include, but are not limited to auristatins, auromycins,
maytansinolds, yttrium, bismuth, ricin, ricin A-chain, combrestatin, duocarmycins, dolostatins, doxorubicin, daunorubicin,
taxol, cisplatin, cc1065, ethidium bromide, mitomycin, etoposide, tenoposlde, vincristine, vinblastine, colchicine, dihydroxy
anthracin dione, actinomycin, diphtheria toxin, Pseudomonas exotoxin (PE) A, PE40, abrin, abrin A chain, modeccin A chain,
alpha-sarcin, gelonin, mitogellin, retstrictocin, phenomycin, enomycin, curicin, crotin, calicheamicin, Sapaonaria officinalis
inhibitor, and glucocorticoid and other chemotherapeutic agents, as well as radioisotopes such as At211 1131, 1125, Y90, Re' 86
Re' 88 Sm' 53 Bi212o213, P32 and radioactive isotopes of Lu including Lu' 7 Antibodies may also be conjugated to an anti-
cancer pro-drug activating enzyme capable of converting the pro-drug to its active form.
The "gene product" is sometimes referred to herein as a protein or mRNA. For example, a "gene product of the
invention" is sometimes referred to herein as a "cancer amino acid sequence", "cancer protein", "protein of a cancer listed in
Table a "cancer mRNA", "mRNA of a cancer listed in Table etc. In one embodiment, the cancer protein is encoded by anucleic acid of Figure 2. The cancer protein can be a fragment, or alternatively, be the full-length protein to the fragment
00 encoded by the nucleic acids of Figure 2. In one embodiment, a cancer amino acid sequence is used to determine
0 sequence identity or similarity. In another embodiment, the sequences are naturally occurring allelic variants of a proteinencoded by a nucleic acid of Figure 2. In another embodiment, the sequences are sequence variants as further described
ct herein.
"High throughput screening" assays for the presence, absence, quantification, or other properties of particularnucleic acids or protein products are well known to those of skill in the art. Similarly, binding assays and reporter gene
assays are similarly well known. Thus, U.S. Patent No. 5,559,410 discloses high throughput screening methods for
proteins; U.S. Patent No. 5,585,639 discloses high throughput screening methods for nucleic acid binding in arrays);while U.S. Patent Nos. 5,576,220 and 5,541,061 disclose high throughput methods of screening for ligand/antibody binding.
In addition, high throughput screening systems are commercially available (see, Amersham Biosciences,
Piscataway, NJ; Zymark Corp., Hopkinton, MA; Air Technical Industries, Mentor, OH; Beckman Instruments, Inc. Fullerton,
00 CA; Precision Systems, Inc., Natick, MA; etc.). These systems typically automate entire procedures, including all sample
and reagent pipetting, liquid dispensing, timed incubations, and final readings of the microplate in detector(s) appropriate for
the assay. These configurable systems provide high throughput and rapid start up as well as a high degree of flexibility and
customization. The manufacturers of such systems provide detailed protocols for various high throughput systems. Thus,
Zymark Corp. provides technical bulletins describing screening systems for detecting the modulation of gene
transcription, ligand binding, and the like.
The term "homolog" refers to a molecule which exhibits homology to another molecule, by for example, having
sequences of chemical residues that are the same or similar at corresponding positions.
"Human Leukocyte Antigen" or "HLA" is a human class I or class II Major Histocompatibility Complex (MHC) protein
(see, Stites, et al., IMMUNOLOGY, 8Tm ED., Lange Publishing, Los Altos, CA (1994).
The terms "hybridize', "hybridizing", "hybridizes" and the like, used in the context of polynucleotides, are meant to
refer to conventional hybridization conditions, preferably such as hybridization in 50% formamide/6XSSC/0.1% SDS/100
pig/ml ssDNA, in which temperatures for hybridization are above 37 degrees C and temperatures for washing in
0.1XSSC/0.1% SDS are above 55 degrees C.
The phrases "isolated" or "biologically pure" refer to material which is substantially or essentially free from
components which normally accompany the material as it is found in its native state. Thus, isolated peptides in accordance
with the invention preferably do not contain materials normally associated with the peptides in their in situ environment. For
example, a polynucleotide is said to be "isolated" when it is substantially separated from contaminant polynuceotides that
correspond or are complementary to genes other than the 191P4D12(b) genes or that encode polypeptides other than
191P4D12(b) gene product or fragments thereof. A skilled artisan can readily employ nucleic acid isolation procedures to obtain
an isolated 191P4D12(b) polynucleotide. A protein is said to be "solated," for example, when physical, mechanical or chemical
methods are employed to remove the 191P4D12(b) proteins from cellular constituents that are normally associated with the
protein. A skilled artisan can readily employ standard purification methods to obtain an isolated 191P4D12(b) protein.
Altematively, an isolated protein can be prepared by chemical means.
The term "mammal" refers to any organism classified as a mammal, including mice, rats, rabbits, dogs, cats, cows,
horses and humans. In one embodiment of the invention, the mammal is a mouse. In another embodiment of the invention, the
mammal is a human.
The terms "metastatic prostate cancer" and "metastatic disease" mean prostate cancers that have spread to
regional lymph nodes or to distant sites, and are meant to include stage D disease under the AUA system and stage
TxNxM+ under the TNM system. As is the case with locally advanced prostate cancer, surgery is generally not indicated for
patients with metastatic disease, and hormonal (androgen ablation) therapy is a preferred treatment modality. Patients with
0C metastatic prostate cancer eventually develop an androgen-refractory state within 12 to 18 months of treatment initiation.
0 Approximately half of these androgen-refractory patients die within 6 months after developing that status. The most common
site for prostate cancer metastasis is bone. Prostate cancer bone metastases are often osteoblastic rather than osteolytic
resulting in net bone formation). Bone metastases are found most frequently in the spine, followed by the femur, pelvis,
rib cage, skull and humerus. Other common sites for metastasis include lymph nodes, lung, liver and brain. Metastatic
C^ prostate cancer is typically diagnosed by open or laparoscopic pelvic lymphadenectomy, whole body radionuclide scans,
skeletal radiography, and/or bone lesion biopsy.
The term "modulator" or "test compound" or "drug candidate" or grammatical equivalents as used herein describe
any molecule, protein, oligopeptide, small organic molecule, polysaccharide, polynucleotide, etc., to be tested for the
C=K capacity to directly or indirectly alter the cancer phenotype or the expression of a cancer sequence, a nucleic acid or
Sprotein sequences, or effects of cancer sequences signaling, gene expression, protein interaction, etc.) In one aspect,
00 a modulator will neutralize the effect of a cancer protein of the Invention. By "neutralize" is meant that an activity of a protein
is inhibited or blocked, along with the consequent effect on the cell. In another aspect, a modulator will neutralize the effect
of a gene, and its corresponding protein, of the invention by normalizing levels of said protein. In preferred embodiments,
modulators alter expression profiles, or expression profile nucleic acids or proteins provided herein, or downstream effector
pathways. In one embodiment, the modulator suppresses a cancer phenotype, e.g. to a normal tissue fingerprint. In another
embodiment, a modulator induced a cancer phenotype. Generally, a plurality of assay mixtures is run in parallel with
different agent concentrations to obtain a differential response to the various concentrations. Typically, one of these
concentrations serves as a negative control, at zero concentration or below the level of detection.
Modulators, drug candidates or test compounds encompass numerous chemical classes, though typically they are
organic molecules, preferably small organic compounds having a molecular weight of more than 100 and less than about
2,500 Daltons. Preferred small molecules are less than 2000, or less than 1500 or less than 1000 or less than 500 D.
Candidate agents comprise functional groups necessary for structural interaction with proteins, particularly hydrogen
bonding, and typically include at least an amine, carbonyl, hydroxyl or carboxyl group, preferably at least two of the functional
chemical groups. The candidate agents often comprise cyclical carbon or heterocyclic structures andlor aromatic or
polyaromatic structures substituted with one or more of the above functional groups. Modulators also comprise biomolecules
such as peptides, saccharides, fatty acids, steroids, purines, pyrimidines, derivatives, structural analogs or combinations
thereof. Particularly preferred are peptides. One class of modulators are peptides, for example of from about five to about
amino adds, with from about five to about 20 amino acids being preferred, and from about 7 to about 15 being particularly
preferred. Preferably, the cancer modulatory protein is soluble, includes a non-transmembrane region, and/or, has an N-
terminal Cys to aid in solubility. In one embodiment, the C-terminus of the fragment is kept as a free acid and the N-terminus
is a free amine to aid in coupling, to cysteine. In one embodiment, a cancer protein of the invention is conjugated to an
immunogenic agent as discussed herein. In one embodiment, the cancer protein is conjugated to BSA. The peptides of the
invention, of preferred lengths, can be linked to each other or to other amino acids to create a longer peptide/protein.
The modulatory peplides can be digests of naturally occurring proteins as is outlined above, random peptides, or "biased"
random peptides. In a preferred embodiment, peptide/protein-based modulators are antibodies, and fragments thereof, as
defined herein.
Modulators of cancer can also be nucleic acids. Nucleic acid modulating agents can be naturally occurring nucleic
acids, random nucleic acids, or "biased" random nucleic acids. For example, digests of prokaryotic or eukaryotic genomes
can be used In an approach analogous to that outlined above for proteins.
The term "monodonal antibody" refers to an antibody obtained from a population of substantially homogeneous
00 antibodies, the antibodies comprising the population are identical except for possible naturally occuning mutations that are
O present in minor amounts.
CK1 A "motif", as in biological motif of a 191P4D12(b)-related protein, refers to any pattern of amino acids forming part
Sof the primary sequence of a protein, that is associated with a particular function protein-protein interaction, protein-DNA
S interaction, etc) or modification that is phosphorylated, glycosylated or amidated), or localization secretory
sequence, nuclear localization sequence, etc.) or a sequence that is correlated with being immunogenic, either humorally or
ri cellularly. A motif can be either contiguous or capable of being aligned to certain positions that are generally correlated with
a certain function or property. In the context of HLA motifs, "motif refers to the pattern of residues in a peptide of defined
S length, usually a peptide of from about 8 to about 13 amino acids for a class I HLA motif and from about 6 to about 25 amino
acids for a class II HLA motif, which is recognized by a particular HLA molecule. Peptide motifs for HLA binding are typically
different for each protein encoded by each human HLA allele and differ in the pattern of the primary and secondary anchor
CK residues.00
0A "pharmaceutical excipient" comprises a material such as an adjuvant, a carrer, pH-adjusting and buffering
agents, tonicity adjusting agents, wetting agents, preservative, and the like.
"Pharmaceutically acceptable" refers to a non-toxic, inert, and/or composition that is physiologically compatible with
humans or other mammals.
The term "polynucleotide" means a polymeric form of nucleotides of at least 10 bases or base pairs in length, either
ribonucleotides or deoxynucleotides or a modified form of either type of nucleotide, and is meant to include single and double
stranded forms of DNA and/or RNA. In the art, this term if often used interchangeably with "oligonucleotide". A
polynucleotide can comprise a nucleotide sequence disclosed herein wherein thymidine as shown for example in Figure
2, can also be uracil this definition pertains to the differences between the chemical structures of DNA and RNA, in
particular the observation that one of the four major bases in RNA is uracil instead of thymidine
The term "polypeptide" means a polymer of at least about 4, 5, 6, 7, or 8 amino acids. Throughout the
specification, standard three letter or single letter designations for amino acids are used. In the art, this term is often used
interchangeably with "peptide" or "protein".
An HLA "primary anchor residue" is an amino acid at a specific position along a peptide sequence which is
understood to provide a contact point between the immunogenic peptide and the HLA molecule. One to three, usually two,
primary anchor residues within a peptide of defined length generally defines a "motif for an immunogenic peptide. These
residues are understood to fit in close contact with peptide binding groove of an HLA molecule, with their side chains buried
in specific pockets of the binding groove. In one embodiment, for example, the primary anchor residues for an HLA class I
molecule are located at position 2 (from the amino terminal position) and at the carboxyl terminal position of a 8, 9, 10, 11, or
12 residue peptide epitope in accordance with the invention. Alternatively, in another embodiment, the primary anchor
residues of a peptide binds an HLA class II molecule are spaced relative to each other, rather than to the termini of a
peptide, where the peptide is generally of at least 9 amino acids in length. The primary anchor positions for each motif and
supermotif are set forth in Table IV. For example, analog peptides can be created by altering the presence or absence of
particular residues in the primary and/or secondary anchor positions shown in Table IV. Such analogs are used to modulate
the binding affinity and/or population coverage of a peptide comprising a particular HLA motif or supermotif.
"Radioisotopes" include, but are not limited to the following (non-limiting exemplary uses are also set forth):
Examples of Medical Isotopes:
Isotope Description of use
Actinium-225 See Thorium-229 (Th-229)
(AC-225)
7 Parent of Radium-223 (Ra-223) which is an alpha emitter used to treat metastases in the
S Actinium-227 skeleton resulting from cancer breast and prostate cancers), and cancer
(AC-227) radioimmunotherapy
Bismuth-212 See Thorium-228 (Th-228)(81-212)
Bismuth-213 See Thorium-229 (Th-229)(Bi-213)
Cadmium-109Cadm1 09 Cancer detection(Cd-109)
Radiation source for radiotherapy of cancer, for food Irradiators, and for sterilization of
medical supplies\Copper-64
Copper-64 A positron emitter used for cancer therapy and SPECT imagingcN (Cu-64)
Copper-67 Beta/gamma emitter used in cancer radioimmunotherapy and diagnostic studies breast
1 (Cu-67) and colon cancers, and lymphoma)00
Dysprosium-166 Cancer radioimmunotherapy(Dy-166)
S Erbium-169 Rheumatoid arthritis treatment, particularly for the small joints associated with fingers and
(Er-169) toes
Europium-152 Radiation source for food irradiation and for sterilization of medical supplies(Eu-152)
Europium-154 Radiation source for food irradiation and for sterilization of medical supplies(Eu-154)
Gadolinium-153 Osteoporosis detection and nuclear medical quality assurance devices(Gd-153)
Gold-198 Implant and Intracavity therapy of ovarian, prostate, and brain cancers(Au-198)Holmium-166 Multiple myeloma treatment in targeted skeletal therapy, cancer radioimmunotherapy, bone
(Ho-166) marrow ablation, and rheumatoid arthritis treatment
Osteoporosis detection, diagnostic imaging, tracer drugs, brain cancer treatment,lodine-125 radiolabeling, tumor imaging, mapping of receptors in the brain, interstitial radiation therapy,
(1-125) brachytherapy for treatment of prostate cancer, determination of glomerular filtration rate
(GFR), determination of plasma volume, detection of deep vein, thrombosis of the legs
Thyroid function evaluation, thyroid disease detection, treatment of thyroid cancer as well as
Iodine-131 other non-malignant thyroid diseases Graves disease, goiters, and hyperthyroidism),(1-131) treatment of leukemia, lymphoma, and other forms of cancer breast cancer) using
radiolmmunotherapy
Iridium-192 Brachytherapy, brain and spinal cord tumor treatment, treatment of blocked arteries (lr-192) arteriosclerosis and restenosis), and implants for breast and prostate tumors
Lutetium-177 Cancer radiolmmunotherapy and treatment of blocked arteries arteriosclerosis and
(Lu-177) restenosis)
Parent of Technetium-99m (Tc-99m) which is used for imaging the brain, liver, lungs, heart,
Molybdenum-99 and other organs. Currently, Tc-99m is the most widely used radioisotope used for diagnostic
(Mo-99) imaging of various cancers and diseases involving the brain, heart, liver, lungs; also used indetection of deep vein thrombosis of the legs
Osmium-194 Cancer radioimmunotherapy(Os-194)
Palladium-103 Prostate cancer treatment(Pd-103)
Platinum-195m Studies on biodistribution and metabolism of cisplatin, a chemotherapeutic drug(Pt-195m)
Phosphorus-32 Polycythemia rubra vera (blood cell disease) and leukemia treatment, bone cancer
00(P-32) diagnosis/treatment; colon, pancreatic, and liver cancer treatment; radiolabeling nucleic acids
for in vitro research, diagnosis of superficial tumors, treatment of blocked arteries arteriosclerosis and restenosis), and intracavity therapy
Phosphorus-33 Leukemia treatment, bone disease diagnosis/treatment, radiolabeling, and treatment of
(P-33) blocked arteries arteriosclerosis and restenosis)
Radium-223(Ra-223)
Rhenium-186(Re-186)
See Actinium-227 (Ac-227)
Bone cancer pain relief, rheumatoid arthritis treatment, and diagnosis and treatment oflymphoma and bone, breast, colon, and liver cancers using radioimmunotherapy
Rhenium-188 Cancer diagnosis and treatment using radioimmunotherapy, bone cancer pain relief,(Re-188) treatment of rheumatoid arthritis, and treatment of prostate cancer
Rhodium-105(Rh-105)
Samarium-145(Sm-145)
Samarium-153(Sm-153)
Cancer radioimmunotherapy
Ocular cancer treatment
Cancer radioimmunotherapy and bone cancer pain relief
Scandium-47 Cancer radioimmunotherapy and bone cancer pain relief(Sc-47)
Strontium-89(Sr-89)
Radiotracer used in brain studies, imaging of adrenal cortex by gamma-scintigraphy, laterallocations of steroid secreting tumors, pancreatic scanning, detection of hyperactiveparathyroid glands, measure rate of bile acid loss from the endogenous pool
Bone cancer detection and brain scans
Bone cancer pain relief, multiple myeloma treatment, and osteoblastic therapy
Technetium-99mSee Molybdenum-99 (Mo-99)(Tc-99m)
Thorium-228(Th-228)
Thorium-229(Th-229)
Thulium-170(Tm-170)
Tin-117m(Sn-117m)
Tungsten-188(W-188)
Parent of Bismuth-212 (Bi-212) which is an alpha emitter used in cancer radioimmunotherapy
Parent of Actinium-225 (Ac-225) and grandparent of Bismuth-213 (Bi-213) which are alpha
emitters used in cancer radioimmunotherapy
Gamma source for blood irradiators, energy source for implanted medical devices
Cancer immunotherapy and bone cancer pain relief
Parent for Rhenium-188 (Re-188) which is used for cancer diagnostics/treatment, bone
cancer pain relief, rheumatoid arthritis treatment, and treatment of blocked arteries
arteriosclerosis and restenosis)
Xenon-127 Neurolmaging of brain disorders, high resolution SPECT studies, pulmonary function tests,
(Xe-127) and cerebral blood flow studies
Ytterblum-175(Yb-175)
Yttrium-91(Y-91)
Cancer radioimmunotherapy
Microseeds obtained from irradiating Yttrium-89 (Y-89) for liver cancer treatment
A gamma-emitting label for Yttrium-90 (Y-90) which is used for cancer radioimmunotherapylymphoma, breast, colon, kidney, lung, ovarian, prostate, pancreatic, and inoperable
liver cancers)
By "randomized" or grammatical equivalents as herein applied to nucleic acids and proteins is meant that each
nucleic acid and peptide consists of essentially random nucleotides and amino acids, respectively. These random peptides
0 0 (or nucleic acids, discussed herein) can incorporate any nudeotide or amino acid at any position. The synthetic process can
be designed to generate randomized proteins or nucleic acids, to allow the formation of all or most of the possible
combinations over the length of the sequence, thus forming a library of randomized candidate bioactive proteinaceous
C agents.
In one embodiment, a library is "fully randomized," with no sequence preferences or constants at any position. In
another embodiment, the library is a "biased random" library. That is, some positions within the sequence either are held
constant, or are selected from a limited number of possibilities. For example, the nucleotides or amino acid residues are
randomized within a defined class, of hydrophobic amino acids, hydrophilic residues, sterically biased (either small or
large) residues, towards the creation of nucleic acid binding domains, the creation of cysteines, for cross-linking, prolines for
SH-3 domains, serines, threonines, tyrosines or histidines for phosphorylation sites, etc., or to purines, etc.
SA "recombinant" DNA or RNA molecule is a DNA or RNA molecule that has been subjected to molecular manipulation
00 in vitro.
SNon-limiting examples of small molecules include compounds that bind or interact with 191P4D12(b), ligands
C( including hormones, neuropeptides, chemokines, odorants, phospholipids, and functional equivalents thereof that bind and
preferably inhibit 191P4D12(b) protein function. Such non-limiting small molecules preferably have a molecular weight of
less than about 10 kDa, more preferably below about 9, about 8, about 7, about 6, about 5 or about 4 kDa. In certain
embodiments, small molecules physically associate with, or bind, 191P4D12(b) protein; are not found in naturally occurring
metabolic pathways; and/or are more soluble in aqueous than non-aqueous solutions
"Stringency" of hybridization reactions is readily determinable by one of ordinary skill in the art, and generally is an
empirical calculation dependent upon probe length, washing temperature, and salt concentration. In general, longer probes
require higher temperatures for proper annealing, while shorter probes need lower temperatures. Hybridization generally
depends on the ability of denatured nucleic acid sequences to reanneal when complementary strands are present in an
environment below their melting temperature. The higher the degree of desired homology between the probe and
hybridizable sequence, the higher the relative temperature that can be used. As a result, it follows that higher relative
temperatures would tend to make the reaction conditions more stringent, while lower temperatures less so. For additional
details and explanation of stringency of hybridization reactions, see Ausubel et al., Current Protocols in Molecular Biology,
Wiley Interscience Publishers, (1995).
"Stringent conditions" or "high stringency conditions", as defined herein, are identified by, but not limited to, those
that employ low ionic strength and high temperature for washing, for example 0.015 M sodium chloride/0.0015 M sodium
citrate/0.1% sodium dodecyl sulfate at 50°C; employ during hybridization a denaturing agent, such as formamide, for
example, 50% (vfv) formamide with 0.1% bovine serum albumin/0.1% Ficoll/0.1% polyvinylpyrrolidone/50 mM sodium
phosphate buffer at pH 6.5 with 750 mM sodium chloride, 75 mM sodium citrate at 42 oC; or employ 50% formamide, 5 x
SSC (0.75 M NaCI, 0.075 M sodium citrate), 50 mM sodium phosphate (pH 0.1% sodium pyrophosphate, 5 x
Denhardt's solution, sonicated salmon sperm DNA (50 p.g/ml), 0.1% SDS, and 10% dextran sulfate at 42 oC, with washes at
42oC in 0.2 x SSC (sodium chloride/sodium, citrate) and 50%.formamide at 55 followed by a high-stringency wash
consisting of 0.1 x SSC containing EDTA at 55 oC. "Moderately stringent conditions" are described by, but not limited to,
those in Sambrook et al., Molecular Cloning: A Laboratory Manual, New York: Cold Spring Harbor Press, 1989, and include
the use of washing solution and hybridization conditions temperature, ionic strength and %SDS) less stringent than
those described above. An example of moderately stringent conditions is overnight incubation at 370C in a solution
comprising: 20% formamide, 5 x SSC (150 mM NaCI, 15 mM trisodium citrate), 50 mM sodium phosphate (pH 5 x
Denhardt's solution, 10% dextran sulfate, and 20 mg/mL denatured sheared salmon sperm DNA, followed by washing the
00 filters in 1 x SSC at about 37-500C. The skilled artisan will recognize how to adjust the temperature, ionic strength, etc. as
0 necessary to accommodate factors such as probe length and the like.
C< An HLA "supermotif is a peptide binding specificity shared by HLA molecules encoded by two or more HLA alleles.
Overall phenotypic frequences of HLA-supertypes in different ethnic populations are set forth in Table IV The non-
limiting constituents of various supetypes are as follows:
A2: A*0201, A*0202, A*0203, A*0204, A* 0205, A*0206, A*6802, A*6901, A*0207
SA3 A3, All, A31, A*3301, A*6801, A*0301, A*1101, A'3101
B7: B7, 8*3501-03, B*51, 8*5301, 8*5401, 8*5501, B*5502, B'5601, B'6701, B*7801, B*0702, B*5101, B*5602
I B44: B*3701, B*4402, 8*4403, B*60 (B*4001), B61 (B*4006)
C Al: A*0102, A*2604, A*3601, A*4301, A*8001C A24: A*24, A*30, A*2403, A*2404, A*3002, A*3003
C 827: B*1401-02, 8*1503, B*1509, 8*1510, 8*1518, B*3801-02, B*3901, 8*3902, B*3903-04, 8*4801-02, B*7301,000 B'2701-08
858: B*1516, B*1517, 8*5701, B*5702, B58
B62: 8*4601, 852, B*1501 (B62), B*1502 (B75), B*1513 (B77)
Calculated population coverage afforded by different HLA-supertype combinations are set forth in Table IV
As used herein "to treat" or "therapeutic" and grammatically related terms, refer to any improvement of any
consequence of disease, such as prolonged survival, less morbidity, and/or a lessening of side effects which are the
byproducts of an alternative therapeutic modality; full eradication of disease is not required.
A "transgenic animal" a mouse or rat) is an animal having cells that contain a transgene, which transgene
was introduced into the animal or an ancestor of the animal at a prenatal, an embryonic stage. A "transgene" is a DNA
that is integrated into the genome of a cell from which a transgenic animal develops.
As used herein, an HLA or cellular immune response "vaccine" is a composition that contains or encodes one or
more peptides of the invention. There are numerous embodiments of such vaccines, such as a cocktail of one or more
individual peptides; one or more peptides of the invention comprised by a polyepitopic peptide; or nucleic acids that encode
such individual peptides or polypeptides, a minigene that encodes a polyepitopic peptide. The "one or more peptides"
can Include any whole unit integer from 1-150 or more, at least 2, 3, 4, 5, 6, 7, 8, 9, 10,11, 12,13, 14,15,16,17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,30,31,32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44,45,46,47,48,49,50,
65, 70, 75, 80, 85, 90, 95, 100, 105, 110, 115, 120, 125, 130, 135, 140, 145, or 150 or more peptides of the invention.
The peptides or polypeptides can optionally be modified, such as by lipidation, addition of targeting or other sequences. HLA
class I peptides of the invention can be admixed with, or linked to, HLA class II peptides, to facilitate activation of both
cytotoxic T lymphocytes and helper T lymphocytes. HLA vaccines can also comprise peptide-pulsed antigen presenting
cells, dendritic cells.
The term "variant refers to a molecule that exhibits a variation from a described type or norm, such as a protein that has
one or more different amino acid residues in the corresponding position(s) of a specifically described protein the
191P4D12(b) protein shown in Figure 2 or Figure 3. An analog is an example of a variant protein. Splice isoforms and single
nucleotides polymorphisms (SNPs) are further examples of variants.
The "191P4D12(b)-related proteins" of the invention include those specifically identified herein, as well as allelic
variants, conservative substitution variants, analogs and homologs that can be isolated/generated and characterized without
undue experimentation following the methods outlined herein or readily available in the art. Fusion proteins that combine parts of
Sdifferent 191P4D12(b) proteins or fragments thereof, as well as fusion proteins of a 191P4012(b) protein and a heterologous
polypeptide are also included. Such 191P4D12(b) proteins are collectively referred to as the 191P4D12(b)-related proteins, the
00 proteins of the invention, or 191P4D12(b). The term "191P4D12(b)-related protein" refers to a polypeptide fragment or a0 191P4D12(b) protein sequence of 4, 5, 6, 7, 8, 9,10,11,12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24, 25, or more than C-i amino acids; or, at least 30, 35, 40, 45, 50, 55, 60, 65, 70,80, 85, 90, 95,100,105, 110,115,120,125,130,135, 140,145,
150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 525,550, 575, or 576 or more amino acids.
II.) 191P4D12(b) PolynucleotidesOne aspect of the invention provides polynucleotides corresponding or complementary to all or part of a
191P4D12(b) gene, mRNA, and/or coding sequence, preferably in isolated form, including polynucleotides encoding a191P4D12(b)-related protein and fragments thereof, DNA, RNA, DNA/RNA hybrid, and related molecules, polynucleotides or
C ollgonucleotides complementary to a 191P4D12(b) gene or mRNA sequence or a part thereof, and polynucleotides or
oligonucleotides that hybridize to a 191P4D12(b) gene, mRNA, or to a 191P4012(b) encoding polynudeotide (collectively,0 191P4D12(b) polynucleotides"). In all instances when referred to in this section, T can also be U in Figure 2.SEmbodiments of a 191P4D12(b) polynucleotide include: a 191P4012(b) polynucleotide having the sequence
C= shown in Figure 2, the nucleotide sequence of 191P4D12(b) as shown in Figure 2 wherein T is U; at least 10 contiguousnucleotides of a polynucleotide having the sequence as shown in Figure 2; or, at least 10 contiguous nudeotides of apolynucleotide having the sequence as shown in Figure 2 where T is U. For example, embodiments of 191P4D12(b)nucleotides comprise, without limitation:
a polynucleotide comprising, consisting essentially of, or consisting of a sequence as shown in Figure 2,wherein T can also be U;
(II) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2A, from nudeotide residue number 264 through nucleotide residue number 1796, including the stop codon,wherein T can also be U;
(II) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2B, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,wherein T can also be U;
(IV) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2C, from nucleotide residue number 264 through nucleotide residue number 1796, including the a stop codon,wherein T can also be U;
a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2D, from nucleotide residue number 264 through nuceotide residue number 1796, including the stop codon,wherein T can also be U;
(VI) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2E, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,wherein T can also be U;
(VII) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure2F, from nucleotide residue number 789 through nucleotide residue number 1676, including the stop codon,wherein T can also be U;
(VIII) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
0 2G, from nucleotide residue number 264 through nucleotide residue number 1721, including the stop codon,
0 wherein T can also be U;
[c (IX) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
2H, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,
wherein T can also be U;
a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
21, from nucleotide residue number 708 through nucleotide residue number 1121, including the stop codon,
wherein T can also be U;
Ci (XI) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
C 2J, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,
C] wherein T can also be U;00
S(XII) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
CK1 2K, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,
wherein T can also be U;
(XIII) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
2L, from nucleotide residue number 264 through nucleotide residue number 1796, including the stop codon,
wherein T can also be U;
(XIV) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
2M, from nucleotide residue number 264 through nucleotide residue number 1799, including the stop codon,
wherein T can also be U;
(XV) a polynucleotide comprising, consisting essentially of, or consisting of the sequence as shown in Figure
2N, from nucleotide residue number 708 through nucleotide residue number 1121, including the stop codon,
wherein T can also be U;
(XVI) a polynucleotide that encodes a 191P4D12(b)-related protein that is at least 90, 91, 92, 93, 94, 95, 96,
97, 98, 99 or 100% homologous to an entire amino acid sequence shown in Figure 2A-N;
(XVII) a polynucleotide that encodes a 191P4D12(b)-related protein that is at least 90, 91, 92, 93, 94, 95, 96,
97, 98, 99 or 100% identical to an entire amino acid sequence shown in Figure 2A-N;
(XVIII) a polynucleotide that encodes at least one peptide set forth in Tables VIII-XXI and XXII-XLIX;
(XIX) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figures 3A-B and 3E-G
in any whole number increment up to 510 that includes at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,13, 14, 15, 16,
17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value
greater than 0.5 in the Hydrophilicity profile of Figure
(XX) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3A-B and 3E-G
In any whole number increment up to 510 that includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,34., 35 amino acid position(s) having a value less than
in the Hydropathicity profile of Figure 6;00O (XXI) a polynudeotide that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
S19,20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,33,34,35 amino acids of a peptide of Figure 3A-B and 3E-G
in any whole number increment up to 510 that includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than
in the Percent Accessible Residues profile of Figure 7;
c (XXII) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acids of a peptide of Figure 3A-B and 3E-G
in any whole number increment up to 510 that includes 1, 2,3,4, 5,6,7,8, 9,10,11,12,13,14,15,16,17,18,
S19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,35 amino acid position(s) having a value greater than
in the Average Flexibility profile of Figure 8;
C0 (XXIII) a polynudeotde that encodes a peptide region of at least 5, 6,7, 8, 9, 10,11, 12,13,14,15,16,17,18,
0 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3A-B and 3E-G
CNI in any whole number increment up to 510 that includes 1, 2,3,4, 5,6, 7,8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25,26, 27, 28, 29, 30,31, 32, 33, 34, 35 amino acid position(s) having a value greater than
in the Beta-turn profile of Figure 9;
(XXIV) a polynucleoude that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3C in any whole
number increment up to 295 that includes 1, 2, 3,4,5,6, 7, 8, 9, 10,11,12,13,14,15,16, 17,18, 19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilidty profile of Figure
(XXV) a polynudeotide that encodes a peptide region of at least 5,6, 7, 8, 9,10,11,12,13,14,15,16, 17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acids of a peptide of Figure 3C in any whole
number increment up to 295 that includes 1,2,3, 4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
Hydropathicity profile of Figure 6;
(XXVI) a polynudeotide that encodes apeptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3C in any whole
number incrementup to 295 that includes 1,2,3,4,5,6,7,8, 9,10,11,12,13,14,15,16,17,18,19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Percent Accessible Residues profile of Figure 7;
(XXVII) a polynucleotide that encodes a peptide region of at least 5,6,7, 8, 9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3C in any whole
number increment up to 295 that includes 1,2, 3,4, 5,6,7, 8,9,10,11,12,13,14,15,16,17,18,19, 20, 21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Average Flexibility profile of Figure 8;
(XXVIII) a polynucleotide that encodes a peptide region of at least 5,6, 7, 8, 9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3C in any whole
number incrementup to 295 thatincludes 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17, 18,19, 20,21,22,
00 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,35 amino acid positon(s) having a value greater than 0.5 in the Beta-
O turn profile of Figure 9
cl (XXIX) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9,10,11,12,13,14,15,16,17, 18,
19, 20, 21, 22,23,24, 25,26, 27,28,29,30,31,32, 33,34,35 amino acids ofa peptide of Figure 3D in any whole
number increment up to 485 that includes 1, 2,3,4,5, 6,7, 8,9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22,
S23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilicity profile of Figure
(XXX) a polynucleotide that encodes a peptide region of at least 5, 6,7, 8,9,10,11,12,13,14,15, 16, 17,18,
S19, 20, 21,22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,35 amino acids of a peptide of Figure 3D in any whole
C number increment up to 485 that includes 1,2, 3,4, 5, 6,7, 8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,
S23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,35 amino acid position(s) having a value less than 0.5 in the
00 Hydropathicity profile of Figure 6;
S(XXXI) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9,10,11,12,13,14,15,16,17,18,
19, 20, 21,22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3D in any whole
number increment up to 485 that includes 1, 2, 3,4,5, 6,7,8,9,10,11,12,13,14,15,16,17,18,19, 20, 21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31,32,33, 34,35 amino acid position(s) having a value greater than 0.5 in the
Percent Accessible Residues profile of Figure 7;
(XXXII) a polynucleotide that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3D in any whole
number increment up to 485 that includes 1, 2, 3,4, 5,6,7,8, 9,10,11,12,13,14,15,16, 17,18,19, 20, 21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Average Flexibility profile of Figure 8;
(XXXIII) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9,10,11,12,13,14,15, 16,17, 18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3D in any whole
number increment up to 485 that includes 1, 2,3,4, 5,6,7,8,9,10, 11, 12,13,14,15,16,17,18,19,20, 21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the Beta-
turn profile of Figure 9
(XXXIV) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9,10,11,12, 13,14,15,16,17, 18,
19,20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,33, 34, 35 amino acids of a peptide of Figure 3H in any whole
number Increment up to 511 that includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilicity profile of Figure
(XXXV) a polynucleotide that encodes a peptide region of at least 5, 6, 7,8, 9,10, 11, 12, 13, 14, 15, 16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,33, 34, 35 amino acids of a peptide of Figure 3H in any whole
number increment up to 511 that includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13,14,15,16, 17, 18, 19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
Hydropathicity profile of Figure 6;
(XXXVI) a polynucleotide that encodes a peptide region of at least 5,6, 7 9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,35 amino acids of a peptide of Figure 3H in any whole
00 numberincrementupto511 thatincludes 1,2,3,4,5,6,7, 8, 9,10,11,12,13,14,15,16,17, 18,19,20,21, 22,
S23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Percent Accessible Residues profile of Figure 7;
(XXXVII) a polynucleotide that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
19,20,21, 22, 23, 24, 25, 26, 27, 28, 29,30,31, 32, 33, 34, 35 amino acids of a peptide of Figure 3H in any whole
number increment up to 511 that includes 1,2,3, 4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19, 20,21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Average Flexibility profile of Figure 8;
(XXXVIII) a polynucleotide that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
S19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 3H in any whole
(N number increment up to 511 that includes 1,2, 3,4, 5, 6,7, 8, 9,10,11,12,13,14,15,16,17,18,19,20, 21, 22,00
S23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the Beta-
q turn profile of Figure 9
(XXXIX) a polynucleotide that encodes a peptide region of at least 5, 6,7, 8, 9,10,11,12,13,14,15,16,17,18,
19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34, 35 amino acids of a peptide of Figure 31-J in any
whole number increment up to 137 that includes 1, 2, 3,4, 5, 6,7,8, 9,10,11, 12,13,14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Hydrophilicity profile of Figure
(XL) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27; 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 31-J in any
whole number increment up to 137 that includes 1, 2,3,4,5,6,7,8, 9,10,11,12,13,14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30,31,32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
Hydropathicity profile of Figure 6;
(XLI) a polynudeotide that encodes a peptide region of at least 5, 6,7,8, 9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 31-J in any
whole number increment up to 137 that Indudes 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30,31,32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Percent Accessible Residues profile of Figure 7;
(XLII) a polynucleotide that encodes a peptide region of at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acids of a peptide of Figure 31-J in any
whole number increment up to 137 that includes 1, 2, 3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Average Flexibility profile of Figure 8;
(XLIII) a polynucleotide that encodes a peptide region of at least 5, 6, 7, 8, 9, 10,11, 12,13,14, 15, 16, 17,18,
19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a peptide of Figure 31-J in any
whole number increment up to 137 that includes 1,2, 3,4,5,6,7, 8,9,10,11,12,13,14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Beta-turn profile of Figure 9
(XLIV) a polynucleotide that is fully complementary to a polynucleotide of any one of (I)-(XLIII).
00 (XLV) a peptide that is encoded by any of to (XLIV); and
OS(XLVI) a composition comprising a polynucleotide of any of (I)-(XLIII) or peptide of (XLV) together with a
pharmaceutical excipient and/or in a human unit dose form.
(XLVII) a method of using a polynucleotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
method to modulate a cell expressing 191P4D12(b),
Lc (XLVIII) a method of using a polynuceotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
method to diagnose, prophylax, prognose, or treat an individual who bears a cell expressing 191P4D12(b)
(XLIX) a method of using a polynucleotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
method to diagnose, prophylax, prognose, or treat an individual who bears a cell expressing 191P4D12(b), said
cell from a cancer of a tissue listed In Table I;<00
00(L) a method of using a polynucleotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
Smethod to diagnose, prophylax, prognose, or treat a a cancer;
(LI) a method of using a polynucleotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
method to diagnose, prophylax, prognose, or treat a a cancer of a tissue listed in Table I; and,
(LII) a method of using a polynucleotide of any (I)-(XLIV) or peptide of (XLV) or a composition of (XLVI) in a
method to identify or characterize a modulator of a cell expressing 191P4D12(b).
As used herein, a range is understood to disclose specifically all whole unit positions thereof.
Typical embodiments of the invention disclosed herein include 191P4D12(b) polynucleotides that encode specific
portions of 191P4D12(b) mRNA sequences (and those which are complementary to such sequences) such as those that
encode the proteins and/or fragments thereof, for example:
4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65,
80, 85, 90, 95, 100, 105,110,115, 120, 125, 130,135,140, 145, 150, 155,160,165, 170, 175, 180, 185,190,195, 200,
225, 250, 275, 300, 325, 350, 375, 400, 425, 450, 475, 500, 505 or 510 more contiguous amino acids of 191P4D12(b)
variant 1; the maximal lengths relevant for other variants are: variant 2, 510 amino acids; variant 6, 295 amino acids, variant
7, 485 amino acids, variant 10, 510 amino acids, variant 11,510 amoni adds, variant 12, 510 amoni acids, variant 13, 511
amino acids, variant 9, 137 amino acids, and variant 14, 137 amino acids.
For example, representative embodiments of the invention disclosed herein include: polynucleotides and their
encoded peptides themselves encoding about amino acid 1 to about amino acid 10 of the 191P4D12(b) protein shown in
Figure 2 or Figure 3, polynucleotides encoding about amino acid 10 to about amino acid 20 of the 191P4D12(b) protein
shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 20 to about amino acid 30 of the 191P4D12(b)
protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 30 to about amino acid 40 of the
191P4D12(b) protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 40 to about amino acid 50 of
the 191P4D12(b) protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 50 to about amino acid
of the 191P4D12(b) protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 60 to about amino
acid 70 of the 191P4D12(b) protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 70 to about
amino acid 80 of the 191P4D12(b) protein shown in Figure 2 or Figure 3, polynucleotides encoding about amino acid 80 to
about amino acid 90 of the 191P4D12(b) protein shown in Figure 2 or Figure 3, polynudeotides encoding about amino acid
to about amino acid 100 of the 191P4D12(b) protein shown in Figure 2 or Figure 3, in increments of about 10 amino
acids, ending at the carboxyl terminal amino acid set forth in Figure 2 or Figure 3. Accordingly, polynucleotides encoding
portions of the amino acid sequence (of about 10 amino acids), of amino acids, 100 through the carboxyl terminal amino acid
00 of the 191P4D12(b) protein are embodiments of the invention. Wherein it is understood that each particular amino acid
0 position discloses that position plus or minus five amino acid residues.
l Polynucleotides encoding relatively long portions of a 191P4D12(b) protein are also within the scope of the
invention. For example, polynucleotides encoding from about amino acid 1 (or 20 or 30 or 40 etc.) to about amino acid
(or 30, or 40 or 50 etc.) of the 191P4012(b) protein "or variant shown in Figure 2 or Figure 3 can be generated by a variety
of techniques well known in the art. These polynudeotide fragments can include any portion of the 191P4D12(b) sequence
r as shown in Figure 2.
Additional illustrative embodiments of the invention disclosed herein include 191P4D12(b) polynucleotide
fragments encoding one or more of the biological motifs contained within a 191P4D12(b) protein "or variant" sequence,
C- including one or more of the motif-bearing subsequences of a 191P4D12(b) protein "or varianf' set forth in Tables VIII-XXI
and XXII-XLIX. In another embodiment, typical polynucleotide fragments of the invention encode one or more of the regions
ri of 191P4D12(b) protein or variant that exhibit homology to a known molecule. In another embodiment of the invention,00
typical polynucleotide fragments can encode one or more of the 191P4D12(b) protein or variant N-glycosylation sites, cAMP
and cGMP-dependent protein kinase phosphorylation sites, casein kinase II phosphorylation sites or N-myristoylation site
and amidation sites.
Note that to determine the starting position of any peptide set forth in Tables VIII-XXI and Tables XXII to XLIX
(collectively HLA Peptide Tables) respective to its parental protein, variant 1, variant 2, etc., reference is made to three
factors: the particular variant, the length of the peptide in an HLA Peptide Table, and the Search Peptides listed in Table VII.
Generally, a unique Search Peptide is used to obtain HLA peptides for a particular variant. The position of each Search
Peptide relative to its respective parent molecule is listed in Table VII. Accordingly, if a Search Peptide begins at position
one must add the value "X minus 1" to each position in Tables VIII-XXI and Tables XXII-IL to obtain the actual position of
the HLA peptides in their parental molecule. For example if a particular Search Peptide begins at position 150 of its parental
molecule, one must add 150 1, 149 to each HLA peptide amino acid position to calculate the position of that amino acid
in the parent molecule.
II.A.) Uses of 191P4D12(b) Polynucleotides
II.A.1.) Monitoring of Genetic Abnormalities
The polynucleotides of the preceding paragraphs have a number of different specific uses. The human
191P4D12(b) gene maps to the chromosomal location set forth in the Example entitled "Chromosomal Mapping of
191P4D12(b)." For example, because the 191P4D12(b) gene maps to this chromosome, polynucleotides that encode
different regions of the 191P4D12(b) proteins are used to characterize cytogenetic abnormalities of this chromosomal locale,
such as abnormalities that are identified as being associated with various cancers. In certain genes, a variety of
chromosomal abnormalities including rearrangements have been identified as frequent cytogenetic abnormalities in a
number of different cancers (see e.g. Krajinovic et al., Mutat. Res. 382(3-4): 81-83 (1998); Johansson et al., Blood 86(10):
3905-3914 (1995) and Finger et al., P.N.A.S. 85(23): 9158-9162 (1988)). Thus, polynucleotides encoding specific regions of
the 191P4D12(b) proteins provide new tools that can be used to delineate, with greater precision than previously possible,
cytogenetic abnormalities in the chromosomal region that encodes 191P4D12(b) that may contribute to the malignant
phenotype. In this context, these polynucleotides satisfy a need in the art for expanding the sensitivity of chromosomal
screening in order to identify more subtle and less common chromosomal abnormalities (see e.g. Evans et al., Am. J. Obstet.
Gynecol 171(4): 1055-1057 (1994)).
Furthermore, as 191P4D12(b) was shown to be highly expressed in prostate and other cancers, 191P4D12(b)
polynucleotides are used in methods assessing the status of 191P4D12(b) gene products in normal versus cancerous
0 tissues. Typically, polynucleotides that encode specific regions of the 191P4D12(b) proteins are used to assess the
S presence of perturbations (such as deletions, insertions, point mutations, or alterations resulting in a loss of an antigen etc.)
in specific regions of the 191P4D12(b) gene, such as regions containing one or more motifs. Exemplary assays include both
RT-PCR assays as well as single-strand conformation polymorphism (SSCP) analysis (see, Marrogi et al., J. Cutan.
Pathol. 26(8): 369-378 (1999), both of which utilize polynucleotides encoding specific regions of a protein to examine these
C regions within the protein.
II.A.2.) Antisense Embodiments
Other specifically contemplated nucleic acid related embodiments of the invention disclosed herein are genomic DNA,
cDNAs, ribozymes, and antisense molecules, as well as nucleic acid molecules based on an alternative backbone, or including
C alternative bases, whether derived from natural sources or synthesized, and include molecules capable of inhibiting the RNA or
00C protein expression of 191P4D12(b). For example, antisense molecules can be RNAs or other molecules, including peptide
nucleic acids (PNAs) or non-nucleic acid molecules such as phosphorothioate derivatives that specifically bind DNA or RNA
0 in a base pair-dependent manner. A skilled artisan can readily obtain these classes of nucleic acid molecules using the
191P4D12(b) polynucleotides and polynucleotide sequences disclosed herein.
Antisense technology entails the administration of exogenous oligonucleotides that bind to a target polynucleotide
located within the cells. The term "antisense" refers to the fact that such oligonucleotides are complementary to their
intracellular targets, 191P4D12(b). See for example, Jack Cohen, Oligodeoxynucleotides, Antisense Inhibitors of Gene
Expression, CRC Press, 1989; and Synthesis 1:1-5 (1988). The 191P4D12(b) antisense oligonucleotides of the present
invention include derivatives such as S-oligonucleotides (phosphorothioate derivatives or S-oligos, see, Jack Cohen, supra),
which exhibit enhanced cancer cell growth inhibitory action. S-oligos (nucleoside phosphorothioates) are isoelectronic
analogs of an oligonucleotide (0-oligo) in which a nonbridging oxygen atom of the phosphate group is replaced by a sulfur
atom. The S-oligos of the present invention can be prepared by treatment of the corresponding O-oligos with 3H-1,2-
benzodithiol-3-one-1,1-dioxide, which is a sulfur transfer reagent. See, lyer, R. P. et al., J. Org. Chem. 55:4693-4698
(1990); and lyer, R. P. et al., J. Am. Chem. Soc. 112:1253-1254 (1990). Additional 191P4D12(b) antisense oligonucleotides
of the present invention include morpholino antisense oligonucleotides known in the art (see, Partridge et al., 1996,
Antisense Nucleic Acid Drug Development 6: 169-175).
The 191P4D12(b) antisense oligonucleotides of the present invention typically can be RNA or DNA that is
complementary to and stably hybridizes with the first 100 5' codons or last 100 3' codons of a 191P4D12(b) genomic
sequence or the corresponding mRNA. Absolute complementarity is not required, although high degrees of complementarity
are preferred. Use of an oligonudeotide complementary to this region allows for the selective hybridization to 191 P4D12(b)
mRNA and not to mRNA specifying other regulatory subunits of protein kinase. In one embodiment, 191P4D12(b) antisense
oligonucleotides of the present invention are 15 to 30-mer fragments of the antisense DNA molecule that have a sequence
that hybridizes to 191P4D12(b) mRNA. Optionally, 191P4D12(b) antisense oligonucleotide is a 30-mer oligonucleotide that
is complementary to a region in the first 10 5' codons or last 10 3' codons of 191P4012(b). Alternatively, the antisense
molecules are modified to employ ribozymes in the inhibition of 191P4D12(b) expression, see, L. A. Couture D. T.
Stinchcomb; Trends Genet 12: 510-515 (1996).
II.A.3.) Primers and Primer Pairs
Further specific embodiments of these nucleotides of the invention include primers and primer pairs, which allow
the specific amplification of polynucleotides of the invention or of any specific parts thereof, and probes that selectively or
specifically hybridize to nucleic acid molecules of the invention or to any part thereof. Probes can be labeled with a
detectable marker, such as, for example, a radioisotope, fluorescent compound, bioluminescent compound, a
chemiluminescent compound, metal chelator or enzyme. Such probes and primers are used to detect the presence of a
00 191P4D12(b) polynucleotide in a sample and as a means for detecting a cell expressing a 191P4D12(b) protein.O
SExamples of such probes include polypeptides comprising all or part of the human 191P4D12(b) cDNA sequence
shown in Figure 2. Examples of primer pairs capable of specifically amplifying 191P4D12(b) mRNAs are also described in the
ct Examples. As will be understood by the skilled artisan, a great many different primers and probes can be prepared based on the
sequences provided herein and used effectively to amplify and/or detect a 191P4D12(b) mRNA.
0 The 191P4D12(b) polynucleotides of the invention are useful for a variety of purposes, including but not limited to
their use as probes and primers for the amplification andlor detection of the 191P4D12(b) gene(s), mRNA(s), or fragments
thereof; as reagents for the diagnosis and/or prognosis of prostate cancer and other cancers; as coding sequences capable
of directing the expression of 191P4D12(b) polypeptides; as tools for modulating or inhibiting the expression of the
191P4D12(b) gene(s) and/or translation of the 191P4D12(b) transcript(s); and as therapeutic agents.
0 The present invention includes the use of any probe as described herein to identify and isolate a 191P4D12(b) or
00 191P4D12(b) related nucleic acid sequence from a naturally occurring source, such as humans or other mammals, as well as the
isolated nucleic acid sequence perse, which would comprise all or most of the sequences found in the probe used.
ll.A.4.) Isolation of 191P4D12(b)-Encoding Nucleic Acid Molecules
The 191P4D12(b) cDNA sequences described herein enable the isolation of other polynucleotides encoding
191P4D12(b) gene product(s), as well as the isolation of polynucleotides encoding 191P4D12(b) gene product homologs,
alternatively spliced isoforms, allelic variants, and mutant forms of a 191P4D12(b) gene product as well as polynucleotides that
encode analogs of 191P4D12(b)-related proteins. Various molecular cloning methods that can be employed to isolate full length
cDNAs encoding a 191P4D12(b) gene are well known (see, for example, Sambrook, J. et al., Molecular Cloning: A Laboratory
Manual, 2d edition, Cold Spring Harbor Press, New York, 1989; Current Protocols in Molecular Biology. Ausubel et al., Eds.,
Wiley and Sons, 1995). For example, lambda phage cloning methodologies can be conveniently employed, using commercially
available cloning systems Lambda ZAP Express, Stratagene). Phage clones containing 191P4D12(b) gene cDNAs can be
identified by probing with a labeled 191P4D12(b) cDNA or a fragment thereof. For example, in one embodiment, a 191P4D12(b)
cDNA Figure 2) or a portion thereof can be synthesized and used as a probe to retrieve overlapping and full-length cDNAs
corresponding to a 191P4D12(b) gene. A 191P4D12(b) gene itself can be isolated by screening genomic DNA libraries, bacterial
artificial chromosome libraries (BACs), yeast artificial chromosome libraries (YACs), and the like, with 191P4D12(b) DNA probes
or primers.
Recombinant Nucleic Acid Molecules and Host-Vector Systems
The invention also provides recombinant DNA or RNA molecules containing a 191P4D12(b) polynudeotide, a fragment,
analog or homologue thereof, including but not limited to phages, plasmids, phagemids, cosmids, YACs, BACs, as well as various
viral and non-viral vectors well known in the art, and cells transformed or transfected with such recombinant DNA or RNA
molecules. Methods for generating such molecules are well known (see, for example, Sambrook et al., 1989, supra).
The Invention further provides a host-vector system comprising a recombinant DNA molecule containing a
191P4D12(b) polynucleotide, fragment, analog or homologue thereof within a suitable prokaryotic or eukaryotic host cell.
Examples of suitable eukaryotic host cells include a yeast cell, a plant cell, or an animal cell, such as a mammalian cell or an
insect cell a baculovirus-infectible cell such as an Sf9 or HighFive cell). Examples of suitable mammalian cells include
various prostate cancer cell lines such as DU145 and TsuPrl, other transfectable or transducible prostate cancer cell lines,
primary cells (PrEC), as well as a number of mammalian cells routinely used for the expression of recombinant proteins
COS, CHO, 293, 293T cells). More particularly, a polynucleotide comprising the coding sequence of 191P4D12(b) or a
fragment, analog or homolog thereof can be used to generate 191P4D12(b) proteins or fragments thereof using any number of
Shost-vector systems routinely used and widely known In the art.
O A wide range of host-vector systems suitable for the expression of 191P4D12(b) proteins or fragments thereof are
C= available, see for example, Sambrook et al., 1989, supra; Current Protocols in Molecular Biology, 1995, supra). Preferred vectors
S for mammalian expression include but are not limited to pcDNA 3.1 myc-His-tag (Invitrogen) and the retroviral vector
pSRatkneo (Muller etal., 1991, MCB 11:1785). Using these expression vectors, 191P4D12(b) can be expressed in several
prostate cancer and non-prostate cell lines, including for example 293, 293T, rat-1, NIH 3T3 and TsuPrl. The host-vector
C' systems of the invention are useful for the production of a 191P4D12(b) protein or fragment thereof. Such host-vector
systems can be employed to study the functional properties of 191P4D12(b) and 191P4D12(b) mutations or analogs.
Recombinant human 191P4D12(b) protein or an analog or homolog or fragment thereof can be produced by
mammalian cells transfected with a construct encoding a 191P4D12(b)-related nucleotide. For example, 293T cells can be
transfected with an expression plasmid encoding 191P4D12(b) or fragment, analog or homolog thereof, a 191P4D12(b)-
1 related protein is expressed in the 293T cells, and the recombinant 191P4D12(b) protein is isolated using standard00C purification methods affinity purification using anti-191P4D12(b) antibodies). In another embodiment, a 191P4D12(b)
o coding sequence is subcloned into the retroviral vector pSRaMSVtkneo and used to infect various mammalian cell lines,
such as NIH 3T3, TsuPrl, 293 and rat-1 in order to establish 191P4D12(b) expressing cell lines. Various other expression
systems well known in the art can also be employed. Expression constructs encoding a leader peptide joined in frame to a
191P4D12(b) coding sequence can be used for the generation of a secreted form of recombinant 191P4D12(b) protein.
As discussed herein, redundancy in the genetic code permits variation in 191P4D12(b) gene sequences. In
particular, it is known in the art that specific host species often have specific codon preferences, and thus one can adapt the
disclosed sequence as preferred for a desired host. For example, preferred analog codon sequences typically have rare
codons codons having a usage frequency of less than about 20% in known sequences of the desired host) replaced
with higher frequency codons. Codon preferences for a specific species are calculated, for example, by utilizing codon
usage tables available on the INTERNET such as at URL dna.affrc.go.jpl-nakamura/codon.html.
Additional sequence modifications are known to enhance protein expression in a cellular host. These include
elimination of sequences encoding spurious polyadenylation signals, exonlintron splice site signals, transposon-like repeats,
and/or other such well-characterized sequences that are deleterious to gene expression. The GC content of the sequence is
adjusted to levels average for a given cellular host, as calculated by reference to known genes expressed in the host cell.
Where possible, the sequence is modified to avoid predicted hairpin secondary mRNA structures. Other useful modifications
include the addition of a translational initiation consensus sequence at the start of the open reading frame, as described in
Kozak, Mol. Cell Biol., 9:5073-5080 (1989). Skilled artisans understand that the general rule that eukaryotic ribosomes
initiate translation exclusively at the 5' proximal AUG codon is abrogated only under rare conditions (see, Kozak PNAS
92(7): 2662-2666, (1995) and Kozak NAR 15(20): 8125-8148 (1987)).
III.) 191P4D12(b)-related Proteins
Another aspect of the present invention provides 191 P4D12(b)-related proteins. Specific embodiments of
191P4D12(b) proteins comprise a polypeptide having all or part of the amino acid sequence of human 191P4D12(b) as
shown in Figure 2 or Figure 3. Alternatively, embodiments of 191P4D12(b) proteins comprise variant, homolog or analog
polypeptides that have alterations in the amino acid sequence of 191 P4D12(b) shown in Figure 2 or Figure 3.
Embodiments of a 191P4D12(b) polypeptide include: a 191P4D12(b) polypeptide having a sequence shown in
Figure 2, a peptide sequence of a 191P4D12(b) as shown in Figure 2 wherein T is U; at least 10 contiguous nucleotides of a
polypeptide having the sequence as shown in Figure 2; or, at least 10 contiguous peptides of a polypeptide having the
sequence as shown in Figure 2 where T is U. For example, embodiments of 191P4D12(b) peptides comprise, without
limitation:00
a protein comprising, consisting essentially of, or consisting of an amino acid sequence as shown in
Figure 2A-N or Figure 3A-J;
(II) a 191P4D12(b)-related protein that is at least 90, 91, 92, 93, 94, 95, 96, 97, 98, 99 or 100% homologous
to an entire amino acid sequence shown in Figure 2A-N or 3A-J;
(III) a 191P4D12(b)-related protein that is at least 90, 91, 92, 93, 94, 95, 96, 97, 98, 99 or 100% identical to
an entire amino acid sequence shown in Figure 2A-N or 3A-J;
(IV) a protein that comprises at least one peptide set forth in Tables VIII to XLIX, optionally with a proviso
C that it is not an entire protein of Figure 2;
0000 a protein that comprises at least one peptide set forth in Tables VIII-XXI, collectively, which peptide is
0also set forth in Tables XXII to XLIX, collectively, optionally with a proviso that it is not an entire protein of Figure 2;
C (VI) a protein that comprises at least two peptides selected from the peptides set forth in Tables VIII-XLIX,
optionally with a proviso that it is not an entire protein of Figure 2;
(VII) a protein that comprises at least two peptides selected from the peptides set forth in Tables VIII to XLIX
collectively, with a proviso that the protein is not a contiguous sequence from an amino acid sequence of Figure 2;
(VIII) a protein that comprises at least one peptide selected from the peptides set forth in Tables VIII-XXI; and
at least one peptide selected from the peptides set forth in Tables XXII to XLIX, with a proviso that the protein is
not a contiguous sequence from an amino acid sequence of Figure 2;
(IX) a polypeptide comprising at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3A-B or 3E-G, in any whole number
increment up to 510 respectively that includes at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater than
in the Hydrophilicity profile of Figure
a polypeptide comprising at least 5, 6, 7, 8, 9,10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3A-B or 3E-G, in any whole number
increment up to 510 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13,14, 15, 16, 17,
18,19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than
in the Hydropathlcity profile of Figure 6;
(XI) a polypeptide comprising at least 5, 6, 7, 8, 9,10, 11, 12,13,14, 15, 16, 17, 18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3A-B or 3E-G, in any whole number
increment up to 510 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
18,19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater
than 0.5 in the Percent Accessible Residues profile of Figure 7;
(XII) a polypeptide comprising at least 5, 6, 7, 8, 9,10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3A-B or 3E-G, in any whole number
increment up to 510 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
18,19, 20, 21,22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater
OO than 0.5 in the Average Flexibility profile of Figure 8;
OS(XIII) a polypeptide comprising at least 5, 6,7,8,9,10,11,12,13,14,15,16,17,18,19, 20,21,22,23,24,
26, 27, 28, 29, 30, 31,32, 33, 34, amino acids of a protein of Figure 3A-B or 3E-G in any whole number
c increment up to 510 respectively that includes at least at least 1,2, 3,4,5,6,7,8, 9,10,11,12,13,14,15,16, 17,
18,19, 20, 21,22, 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater
Sthan 0.5 in the Beta-turn profile of Figure 9;
(XIV) a polypeptide comprising at least 5,6,7,8, 9,10,11, 12,13,14, 15,16, 17,18,19, 20, 21, 22, 23, 24,
25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3C, in any whole number increment up
to 295 respectively that includes at least 1, 2, 3,4, 5,6, 7,8, 9,10,11,12,13,14, 15,16,17,18,19, 20, 21, 22,
C 23, 24, 25, 26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
SHydrophilicity profile of Figure 00
0 (XV) a polypeptide comprising at least 5,6,7,8,9,10,11,12,13,14,15,16,17,18,19, 20,21, 22,23, 24,
C 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3C, in any whole number increment up
to 295 respectively that includes at least at least 1, 2, 3,4, 5, 6, 7, 8, 9,10,11, 12, 13, 14, 15, 16,17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
Hydropathicity profile of Figure 6;
(XVI) a polypeptide comprising at least 5,6,7,8, 9,10,11,12,13,14,15,16, 17,18,19, 20,21, 22,23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3C, in any whole number increment up
to 295 respectively that includes at least at least 1, 2, 3, 4,5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Percent Accessible Residues profile of Figure 7;
(XVII) a polypeptide comprising at least 5,6,7, 8, 9,10,11,12,13,14,15,16, 17,18,19, 20,21, 22, 23, 24,
26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acids of a protein of Figure 3C, in any whole number increment up
to 295 respectively that includes at least at least 1,2,3,4,5,6,7,8,9, 10, 11, 12,13, 14,15,16,17,18,19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 In
the Average Flexibility profile of Figure 8;
(XVIII) a polypeptide comprising at least 5,6,7,8,9, 10, 11, 12,13,14,15,16,17,18,19,20,21,22,23,24,
26, 27, 28, 29, 30, 31, 32, 33, 34, amino acids of a protein of Figure 3C in any whole number increment up to
295 respectively that includes at least at least 1, 2,3,4, 5, 6, 7,8, 9,10, 11, 12, 13, 14, 15, 16,17,18,19,20, 21,
22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Beta-turn profile of Figure 9;
(XIX) a polypeptide comprising at least 5, 6, 7, 8, 9,10, 11,12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31,32, 33,34, 35 amino acids of a protein of Figure 3D, In any whole number increment up
to 485 respectively that indudes at least 1, 2,3,4, 5, 6, 7,8, 9,10,11,12,13,14,15,16,17,18,19, 20, 21,22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilicity profile of Figure
(XX) a polypeptide comprising at least 5, 6, 7, 8, 9, 10, 11, 12,13,14,15,16, 17, 18,19,20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31,32, 33, 34, 35 amino acids of a protein of Figure 3D, in any whole number increment up
to 485respectively that includes at least at least 1, 2, 3, 4,5, 6, 7, 8, 9,10,11,12,13,14,15,16,17,18,19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
0
(XXI) a polypeptide comprising at least 5, 6, 7.8, 9,10, 11, 12, 13, 14, 15.16, 17, 18, 19, 20. 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 31), in any whole number Increment up
to 485 respectively that includes at least at least 1, 2, 3,4, 5, 6,7, 8,9,10,11, 12,13,14, 15, 16, 17,18, 19,20,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 In
c-K1 the Percent Accessible Residues profile of Figure 7;
(XXII) a polypeptide comprising at least 5, 6,7, 8, 9,10, 11,12,13, 14, 15,16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34. 35 amino acids of a protein of Figure 3D, in any whole number increment up
to 485 respectively that includes atleast at least1, 2 3 4 6 7 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
00 the Average Flexibility profile of Figure 8;
(XXIII) a polypeptide comprising at least 5, 6, 7,8, 9,10, 11,12,13, 14, 15,16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, amino acids of a protein of Figure 3D in any whole number increment up to
485 respecively that includes at least at leastl1, 2, 3, 4, 5, 6, 7, 8, 9,10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21,
22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Beta-turn profile of Figure 9;
(XXIV) a polypeptide comprising at least 5, 6,7, 8, 9,10, 11, 12, 13,14,15,16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3H, in any whole number increment up
to 611 respectively that includes at leasti1, 2, 3, 4, 5,6, 7, 8,9,10, 11, 12, 13,14, 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilicity profile of Figure
(XXV) a polypeptide comprising at least 5, 6, 7, 8,9, 10, 11,12,13, 14,15,16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3H, in any whole number increment up
to 511 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in the
Hydropathicity profile of Figure 6;
(XXVI) a polypeptide comprising at least 5, 6,7, 8,9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3H, in any whole number increment up
to 511 respectively that includes at least at least 1, 2,3, 4,5, 6,7, 8, 9,10,11, 12,13, 14, 15, 16, 17, 18,19,
21, 22, 23, 24, 25, 26, 27, 28,29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Percent Accessible Residues profile of Figure 7;
(XXVII) a polypeptide comprising at least 5, 6, 7, 8,9,10,11, 12,13, 14,15,16,17, 18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 3H, in any whole number increment up
to 511 respectively that includes atleast atleast, 2, 3,4, 5,6, 7, 8,9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Average Flexibility profile of Figure 8;
(XXVIII) a polypeptide comprising at least 5, 6, 7, 8, 9, 10,11, 12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24,
00 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, amino acids of a protein of Figure 3H in any whole number increment up to
O 511 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14,15, 16,17, 18, 19, 20, 21,
C22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Beta-turn profile of Figure 9;
(XXIX) a polypeptide comprising at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 31-J, in any whole number increment up
to 137 respectively that includes at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Hydrophilicity profile of Figure
S(XXX) a polypeptide comprising at least 5, 6, 7, 8, 9, 10,11,12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 31-J, in any whole number increment0 0 up to 137 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value less than 0.5 in
the Hydropathicity profile of Figure 6;
(XXXI) a polypeptide comprising at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,16, 17,18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 31-J, in any whole number Increment up
to 137 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in
the Percent Accessible Residues profile of Figure 7;
(XXXII) a polypeptide comprising at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acids of a protein of Figure 31-J, in any whole number increment
up to 137 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,13,14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than
in the Average Flexibility profile of Figure 8;
(XXXIII) a polypeptide comprising at least 5, 6, 7, 8, 9, 10,11, 12, 13, 14, 15, 16, 17,18,19, 20, 21, 22, 23, 24,
26, 27, 28, 29, 30, 31, 32, 33, 34, amino acids of a protein of Figure 31-J in any whole number increment up to
137 respectively that includes at least at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21,
22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 amino acid position(s) having a value greater than 0.5 in the
Beta-turn profile of Figure 9;
(XXXIV) a peptide that occurs at least twice in Tables VIII-XXI and XXII to XLIX, collectively;
(XXXV) a peptide that occurs at least three times in Tables VIII-XXI and XXII to XLIX, collectively;
(XXXVI) a peptide that occurs at least four times in Tables VIII-XXI and XXII to XLIX, collectively;
(XXXVII) a peptide that occurs at least five times in Tables VIII-XXI and XXII to XLIX, collectively;
(XXXVIII) a peptide that occurs at least once in Tables VIII-XXI, and at least once in tables XXII to XLIX;
(XXXIX) a peptide that occurs at least once in Tables VIII-XXI, and at least twice in tables XXII to XLIX;
(XL) a peptide that occurs at least twice in Tables VIII-XXI, and at least once in tables XXII to XLIX;
(XLI) a peptide that occurs at least twice in Tables VIII-XXI, and at least twice in tables XXII to XLIX;
(XLII) a peptide which comprises one two, three, four, or five of the following characteristics, or an
oligonucleotide encoding such peptide:0 i) a region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment
up to the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or
greater than 0.5, 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Hydrophilicity profile of Figure
C ii) a region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment
up to the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or less
Sthan 0.5, 0.4, 0.3, 0.2, 0.1, or having a value equal to 0.0, in the Hydropathicity profile of Figure 6;
iii) a region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment
up to the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or
greater than 0.5, 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Percent Accessible Residues profile of
RFigure 7;
iv) a region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment
00 up to the full length of that protein in Figure 3, that Includes an amino acid position having a value equal to or
greater than 0.5, 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Average Flexibility profile of Figure 8; or,
C v) a region of at least 5 amino acids of a particular peptide of Figure 3, in any whole number increment
up to the full length of that protein in Figure 3, that includes an amino acid position having a value equal to or
greater than 0.5, 0.6, 0.7, 0.8, 0.9, or having a value equal to 1.0, in the Beta-turn profile of Figure 9;
(XLIII) a composition comprising a peptide of (I)-(XLII) or an antibody or binding region thereof together with a
pharmaceutical excipient andlor in a human unit dose form.
(XLIV) a method of using a peptide of or an antibody or binding region thereof or a composition of
(XLIII) in a method to modulate a cell expressing 191P4D12(b),
(XLV) a method of using a peptide of (I)-(XLII) or an antibody or binding region thereof or a composition of
(XLIII) in a method to diagnose, prophylax, prognose, or treat an individual who bears a cell expressing 191P4D12(b)
(XLVI) a method of using a peptide of (I)-(XLII) or an antibody or binding region thereof or a composition (XIIII)
in a method to diagnose, prophylax, prognose, or treat an individual who bears a cell expressing 191P4D12(b), said cell from
a cancer of a tissue listed in Table I;
(XLVII) a method of using a peptide of (I)-(XLII) or an antibody or binding region thereof or a composition of
(XLIII) in a method to diagnose, prophylax, prognose, or treat a a cancer;
(XLVIII) a method of using a peptide of (I)-(XLII) or an antibody or binding region thereof or a composition of
(XLIII) in a method to diagnose, prophylax, prognose, or treat a a cancer of a tissue listed in Table I; and,
(XLIX) a method of using a a peptide of (I)-(XLII) or an antibody or binding region thereof or a composition
(XLIII) in a method to identify or characterize a modulator of a cell expressing 191P4D12(b).
As used herein, a range is understood to specifically disclose all whole unit positions thereof.
Typical embodiments of the invention disclosed herein include 191P4D12(b) polynucleotides that encode specific
portions of 191P4D12(b) mRNA sequences (and those which are complementary to such sequences) such as those that
encode the proteins and/or fragments thereof, for example:
4, 5, 6, 7, 8, 9, 10,11, 12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65,
00 75, 80,85,90, 95,100,105, 110, 115,120,125,130,135,140,145,150,155,160,165,170, 175,180,185,190,195, 200,
O 225, 250, 275, 300, 325, 350, 375, 400,425, 450, 475, 500, 505, or 510 or more contiguous amino acids of 191P4D12(b)
C1 variant 1; the maximal lengths relevant for other variants are: variant 2, 510 amino acids; variant 6, 295 amino acids, variant
7, 485 amino acids, variant 10, 510 amino acids, variant 11, 510 amino acids, variant 12, 510 amino acids, variant 13, 511
amino acids, variant 9, 137 amino acids, and variant 14, 137 amino acids..
In general, naturally occurring allelic variants of human 191P4D12(b) share a high degree of structural identity and
C homology 90% or more homology). Typically, allelic variants of a 191P4D12(b) protein contain conservative amino acid
substitutions within the 191P4D12(b) sequences described herein or contain a substitution of an amino acid from a corresponding
position in a homologue of 191P4D12(b). One class of 191P4D12(b) allelic variants are proteins that share a high degree of
homology with at least a small region of a particular 191P4D12(b) amino add sequence, but further contain a radical departure
from the sequence, such as a non-conservative substitution, truncation, insertion or frame shift. In comparisons of protein
CN sequences, the terms, similarity, identity, and homology each have a distinct meaning as appreciated in the field of genetics.00
Moreover, orthology and paralogy can be important concepts describing the relationship of members of a given protein family In
one organism to the members of the same family in other organisms.
Amino acid abbreviations are provided in Table II. Conservative amino acid substitutions can frequently be made
in a protein without altering either the conformation or the function of the protein. Proteins of the invention can comprise 1, 2,
3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 conservative substitutions. Such changes include substituting any of isoleucine
valine and leucine for any other of these hydrophobic amino acids; aspartic acid for glutamic acid and vice
versa; glutamine for asparagine and vice versa; and serine for threonine and vice versa. Other substitutions
can also be considered conservative, depending on the environment of the particular amino acid and its role in the three-
dimensional structure of the protein. For example, glycine and alanine can frequently be interchangeable, as can
alanine and valine Methionine which is relatively hydrophobic, can frequently be interchanged with leucine and
isoleucine, and sometimes with valine. Lysine and arginine are frequently interchangeable in locations in which the
significant feature of the amino acid residue is its charge and the differing pK's of these two amino acid residues are not
significant. Still other changes can be considered "conservative" in particular environments (see, e.g. Table III herein; pages
13-15 "Biochemistry" 2nd ED. Lubert Stryer ed (Stanford University); Henikoff et al., PNAS 1992 Vol 89 10915-10919; Lei et
al., J Biol Chem 1995 May 19; 270(20):11882-6).
Embodiments of the invention disclosed herein include a wide variety of art-accepted variants or analogs of
191P4D12(b) proteins such as polypeptides having amino acid insertions, deletions and substitutions. 191P4D12(b) variants
can be made using methods known in the art such as site-directed mutagenesis, alanine scanning, and PCR mutagenesis.
Site-directed mutagenesis (Carter et al., Nucl. Acids Res., 13:4331 (1986); Zoller et al., Nucl. Acids Res., 10.6487 (1987)),
cassette mutagenesis (Wells et al., Gene, 34:315 (1985)), restriction selection mutagenesis (Wells et al., Philos. Trans. R.
Soc. London SerA, 317:415 (1986)) or other known techniques can be performed on the cloned DNA to produce the
191P4D12(b) variant DNA.
Scanning amino acid analysis can also be employed to identify one or more amino acids along a contiguous
sequence that is involved in a specific biological activity such as a protein-protein interaction. Among the preferred scanning
amino acids are relatively small, neutral amino acids. Such amino acids include alanine, glycine, serine, and cysteine.
Alanine is typically a preferred scanning amino acid among this group because it eliminates the side-chain beyond the beta-
carbon and is less likely to alter the main-chain conformation of the variant. Alanine is also typically preferred because it is
the most common amino acid. Further, it is frequently found in both buried and exposed positions (Creighton, The Proteins,
Freeman Co., Chothia, J. Mol. Biol., 150:1 (1976)). If alanine substitution does not yield adequate amounts of
variant, an isosteric amino acid can be used.
00 As defined herein, 191P4D12(b) variants, analogs or homologs, have the distinguishing attribute of having at least00 one epitope that is "cross reactive" with a 191P4D12(b) protein having an amino acid sequence of Figure 3. As used in this
sentence, "cross reactive" means that an antibody or T cell that specifically binds to a 191P4D12(b) variant also specifically
c binds to a 191P4D12(b) protein having an amino acid sequence set forth in Figure 3. A polypeptide ceases to be a variant of
a protein shown in Figure 3, when it no longer contains any epitope capable of being recognized by an antibody or T cell that
specifically binds to the starting 191P4D12(b) protein. Those skilled in the art understand that antibodies that recognize
proteins bind to epitopes of varying size, and a grouping of the order of about four or five amino acids, contiguous or not, is
regarded as a typical number of amino acids In a minimal epitope. See, Nair et al., J. Immunol 2000 165(12): 6949-
6955; Hebbes et al., Mol Immunol (1989) 26(9):865-73; Schwartz et al., J Immunol (1985) 135(4):2598-608.
LC Other classes of 191P4D12(b)-related protein variants share 70%, 75%, 80%, 85% or 90% or more similarity with
an amino acid sequence of Figure 3, or a fragment thereof. Another specific class of 191P4D12(b) protein variants or
00 analogs comprises one or more of the 191P4D12(b) biological motifs described herein or presently known in the art. Thus,
encompassed by the present invention are analogs of 191P4D12(b) fragments (nucleic or amino acid) that have altered
Cl functional immunogenic) properties relative to the starting fragment. It is to be appreciated that motifs now or which
become part of the art are to be applied to the nucleic or amino acid sequences of Figure 2 or Figure 3.
As discussed herein, embodiments of the claimed invention include polypeptides containing less-than the full
amino acid sequence of a 191P4D12(b) protein shown in Figure 2 or Figure 3. For example, representative embodiments of
the invention comprise peptides/proteins having any 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or more contiguous amino acids of
a 191P4D12(b) protein shown in Figure 2 or Figure 3.
Moreover, representative embodiments of the invention disclosed herein include polypeptides consisting of about
amino acid 1 to about amino acid 10 of a 191P4D12(b) protein shown in Figure 2 or Figure 3, polypeptides consisting of
about amino acid 10 to about amino acid 20 of a 191P4D12(b) protein shown in Figure 2 or Figure 3, polypeptides consisting
of about amino acid 20 to about amino acid 30 of a 191P4D12(b) protein shown in Figure 2 or Figure 3, polypeptides
consisting of about amino acid 30 to about amino acid 40 of a 191P4D12(b) protein shown in Figure 2 or Figure 3,
polypeptides consisting of about amino acid 40 to about amino acid 50 of a 191P4D12(b) protein shown in Figure 2 or Figure
3, polypeptides consisting of about amino acid 50 to about amino acid 60 of a 191P4D12(b) protein shown in Figure 2 or
Figure 3, polypeptides consisting of about amino acid 60 to about amino acid 70 of a 191P4D12(b) protein shown in Figure 2
or Figure 3, polypeptides consisting of about amino acid 70 to about amino acid 80 of a 191P4D12(b) protein shown in
Figure 2 or Figure 3, polypeptides consisting of about amino acid 80 to about amino acid 90 of a 191P4D12(b) protein shown
in Figure 2 or Figure 3, polypeptides consisting of about amino acid 90 to about amino acid 100 of a 191P4D12(b) protein
shown in Figure 2 or Figure 3, etc. throughout the entirety of a 191P4D12(b) amino acid sequence. Moreover, polypeptides
consisting of about amino acid 1 (or 20 or 30 or 40 etc.) to about amino acid 20, (or 130, or 140 or 150 etc.) of a
191P4D12(b) protein shown in Figure 2 or Figure 3 are embodiments of the invention. It is to be appreciated that the starting
and stopping positions in this paragraph refer to the specified position as well as that position plus or minus 5 residues.
191P4D12(b)-related proteins are generated using standard peptide synthesis technology or using chemical cleavage
methods well known in the art. Alternatively, recombinant methods can be used to generate nucleic acid molecules that encode a
191P4D12(b)-related protein. In one embodiment, nucleic acid molecules provide a means to generate defined fragments of a
191P4D12(b) protein (or variants, homologs or analogs thereof).
III.A.) Motif-bearing Protein Embodiments
OO Additional illustrative embodiments of the invention disclosed herein include 191P4D12(b) polypeptides comprising
S the amino acid residues of one or more of the biological motifs contained within a 191P4D12(b) polypeptide sequence set
Cr forth in Figure 2 or Figure 3. Various motifs are known In the art, and a protein can be evaluated for the presence of such
motifs by a number of publicly available Internet sites (see, URL addresses: pfam.wustl.edu/;
searchlauncher.bcm.tmc.edulseq-search/struc-predict.html; psort.ims.u-tokyo.ac.jp/; cbs.dtu.dk/;
O ebi.ac.uk/interpro/scan.html; expasy.ch/tools/scnpsitl .html; EpimatrixTM and EplmerT Brown University,
S brown.edulResearch/TB-HIVLab/epimatrixepimatx.html; and BIMAS, bimas.dcrtnih.gov/.).
Motif bearing subsequences of all 191P4D12(b) variant proteins are set forth and identified in Tables VIII-XXI and
XXII-XLIX.
C Table V sets forth several frequently occurring motifs based on pfam searches (see URL address pfam.wustl.edul).
The columns of Table V list motif name abbreviation, percent Identity found amongst the different member of the motif
C family, motif name or description and most common function; location information is included if the motif is relevant for000 location.
S Polypeptides comprising one or more of the 191P4D12(b) motifs discussed above are useful in elucidating the
specific characteristics of a malignant phenotype in view of the observation that the 191P4D12(b) motifs discussed above
are associated with growth dysregulation and because 191P4D12(b) is overexpressed in certain cancers (See, Table I).
Casein kinase II, cAMP and camp-dependent protein kinase, and Protein Kinase C, for example, are enzymes known to be
associated with the development of the malignant phenotype (see e.g. Chen etal., Lab Invest., 78(2): 165-174 (1998);
Gaiddon et al., Endocrinology 136(10): 4331-4338 (1995); Hall et al., Nucleic Acids Research 24(6): 1119-1126 (1996);
Peterziel et al., Oncogene 18(46): 6322-6329 (1999) and O'Brian, Oncol. Rep. 305-309 (1998)). Moreover, both
glycosylation and myristoylation are protein modifications also associated with cancer and cancer progression (see e.g.
Dennis et al., Biochem. Biophys. Acta 1473(1):21-34 (1999); Raju et al., Exp. Cell Res. 235(1): 145-154 (1997)). Amidation
is another protein modification also associated with cancer and cancer progression (see e.g. Treston et al., J. Natl. Cancer
Inst. Monogr. 169-175 (1992)).
In another embodiment, proteins of the invention comprise one or more of the immunoreactive epitopes identified
in accordance with art-accepted methods, such as the peptides set forth in Tables VIII-XXI and XXII-XLIX. CTL epitopes can
be determined using specific algorithms to identify peptides within a 191P4D12(b) protein that are capable of optimally binding to
specified HLA alleles Table IV; Epimatrix M and EpimerTM Brown University, URL brown.edulResearch/TB-
HIV_Lablepimabix/epimatrix.html; and BIMAS, URL bimas.dcrt.nih.gov/.) Moreover, processes for identifying peptides that have
sufficient binding affinity for HLA molecules and which are correlated with being immunogenic epitopes, are well known in the
art, and are carried out without undue experimentation. In addition, processes for identifying peptides that are immunogenic
epitopes, are well known in the art, and are carried out without undue experimentation either in vitro or in vivo.
Also known in the art are principles for creating analogs of such epitopes in order to modulate immunogenicity. For
example, one begins with an epitope that bears a CTL or HTL motif (see, the HLA Class I and HLA Class II
motifs/supermotifs of Table IV). The epitope is analoged by substituting out an amino acid at one of the specified positions,
and replacing it with another amino acid specified for that position. For example, on the basis of residues defined in Table
IV, one can substitute out a deleterious residue in favor of any other residue, such as a preferred residue; substitute a less-
preferred residue with a preferred residue; or substitute an originally-occurring preferred residue with another preferred
residue. Substitutions can occur at primary anchor positions or at other positions in a peptide; see, Table IV.
A variety of references reflect the art regarding the identification and generation of epitopes In a protein of interest
as well as analogs thereof. See, for example, WO 97/33602 to Chesnut et al.; Sette, Immunogenetics 1999 50(3-4): 201-
212; Sette et al., J. Immunol. 2001 166(2): 1389-1397; Sidney et al., Hum. Immunol. 1997 58(1): 12-20; Kondo et al.,
Immunogenetics 1997 45(4): 249-258; Sidney etal., J. Immunol. 1996 157(8): 3480-90; and Falk et Nature 351: 290-6
00 (1991); Hunt et al., Science 255:1261-3(1992); Parker etal., J. Immunol. 149:3580-7 (1992); Parker etal., J. Immunol.
152:163-75 (1994)); Kast et al., 1994 152(8): 3904-12; Borras-Cuesta et al., Hum. Immunol. 2000 61(3): 266-278; Alexander
et al., J, Immunol. 2000 164(3); 164(3): 1625-1633; Alexander et al., PMID: 7895164, UI: 95202582; O'Sullivan et al., J.
Immunol. 1991 147(8): 2663-2669; Alexander etal., Immunity 1994 751-761 and Alexander et al., Immunol. Res. 1998
18(2): 79-92.
Related embodiments of the invention include polypeptides comprising combinations of the different motifs set forth
in Table VI, and/or, one or more of the predicted CTL epitopes of Tables VIII-XXI and XXII-XLIX, and/or, one or more of the
predicted HTL epitopes of Tables XLVI-XLIX, and/or, one or more of the T cell binding motifs known in the art. Preferred
S embodiments contain no insertions, deletions or substitutions either within the motifs or within the intervening sequences of
Cr the polypeptides. In addition, embodiments which Include a number of either N-terminal and/or C-terminal amino acid
residues on either side of these motifs may be desirable (to, for example, include a greater portion of the polypeptide
00 architecture in which the motif is located). Typically, the number of N-terminal and/or C-terminal amino acid residues on
either side of a motif is between about 1 to about 100 amino acid residues, preferably 5 to about 50 amino acid residues.
C 191P4D12(b)-related proteins are embodied in many forms, preferably in isolated form. A purified 191P4D12(b)
protein molecule will be substantially free of other proteins or molecules that impair the binding of 191P4012(b) to antibody,
T cell or other ligand. The nature and degree of isolation and purification will depend on the intended use. Embodiments of a
191P4D12(b)-related proteins include purified 191P4D12(b)-related proteins and functional, soluble 191P4D12(b)-related
proteins. In one embodiment, a functional, soluble 191P4D12(b) protein or fragment thereof retains the ability to be bound
by antibody, T cell or other ligand.
The invention also provides 191P4D12(b) proteins comprising biologically active fragments of a 191P4D12(b)
amino acid sequence shown in Figure 2 or Figure 3. Such proteins exhibit properties of the starting 191P4D12(b) protein,
such as the ability to elicit the generation of antibodies that specifically bind an epitope associated with the starting
191P4D12(b) protein; to be bound by such antibodies; to elicit the activation of HTL or CTL; and/or, to be recognized by HTL
or CTL that also specifically bind to the starting protein.
191P4D12(b)-related polypeptides that contain particularly interesting structures can be predicted and/or identified using
various analytical techniques well known in the art, including, for example, the methods of Chou-Fasman, Gamier-Robson, Kyte-
Doolittle, Eisenberg, Karplus-Schultz or Jameson-Wolf analysis, or based on immunogenicity. Fragments that contain such
structures are particularly useful in generating subunit-specific anti-191P4D12(b) antibodies or T cells or in identifying cellular
factors that bind to 191P4D12(b). For example, hydrophilicity profiles can be generated, and immunogenic peptide fragments
identified, using the method of Hopp, T.P. and Woods, 1981, Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828.
Hydropathidty profiles can be generated, and immunogenic peptide fragments identified, using the method of Kyte, J. and
Doolittle, 1982, J. Mol. Biol. 157:105-132. Percent Accessible Residues profiles can be generated, and
immunogenic peptide fragments identified, using the method of Janin 1979, Nature 277:491-492. Average Flexibility
profiles can be generated, and immunogenic peptide fragments identified, using the method of Bhaskaran Ponnuswamy
1988, Int. J. Pept. Protein Res. 32:242-255. Beta-turn profiles can be generated, and immunogenic peptide fragments
identified, using the method of Deleage, Roux 1987, Protein Engineering 1:289-294.
CTL epitopes can be determined using specific algorithms to identify peptides within a 191P4D12(b) protein that are
capable of optimally binding to specified HLA alleles by using the SYFPEITHI site at World Wide Web URL syfpeithi.bmi-
heidelberg.com/; the listings in Table EpimatrixTM and Epimer TM Brown University, URL (brown.edu/ResearchTfB-
HIVLab/epimatrixepimatrix.html); and BIMAS, URL bimas.dcrt.nih.gov/). Illustrating this, peptide epitopes from 191P4D12(b)
that are presented in the context of human MHC Class I molecules, HLA-A1, A2, A3, All, A24, 87 and B35 were
0 predicted (see, Tables VIII-XXI, XXII-XLIX). Specifically, the complete amino acid sequence of the 191P4D12(b) protein
0 and relevant portions of other variants, for HLA Class I predictions 9 flanking residues on either side of a point mutation
C- or exon Juction, and for HLA Class II predictions 14 flanking residues on either side of a point mutation or exon junction
Scorresponding to that variant, were entered into the HLA Peptide Motif Search algorithm found in the Bioinformatlcs and
Molecular Analysis Section (BIMAS) web site listed above; in addition to the site SYFPEITHI, at URL syfpeithi.bmi-
heidelberg.com/.
CN The HLA peptide motif search algorithm was developed by Dr. Ken Parker based on binding of specific peptide
sequences In the groove of HLA Class I molecules, in particular HLA-A2 (see, Falk et al., Nature 351: 290-6 (1991);
r- Hunt et al., Science 255:1261-3 (1992); Parker et al., J. Immunol. 149:3580-7 (1992); Parker et al., J. Immunol. 152:163-75
LC (1994)). This algorithm allows location and ranking of 8-mer, 9-mer, and 10-mer peptides from a complete protein sequence
for predicted binding to HLA-A2 as well as numerous other HLA Class I molecules. Many HLA class I binding peplides are 8-
1 10 or 11-mers. For example, for Class I HLA-A2, the epitopes preferably contain a leucine or methionine at00C position 2 and a valine or leucine at the C-terminus (see, Parker et at., J. Immunol. 149:3580-7 (1992)). Selected
S results of 191P4D12(b) predicted binding peptides are shown in Tables VIII-XXI and XXII-XLIX herein. In Tables VIII-XXI and
XXII-XLVII, selected candidates, 9-mers and 10-mers, for each family member are shown along with their location, the amino
acid sequence of each specific peptide, and an estimated binding score. In Tables XLVI-XLIX, selected candidates,
mers, for each family member are shown along with their location, the amino acid sequence of each specific peptide, and an
estimated binding score. The binding score corresponds to the estimated half time of dissociation of complexes containing
the peptide at 37oC at pH 6.5. Peptides with the highest binding score are predicted to be the most tightly bound to HLA
Class I on the cell surface for the greatest period of time and thus represent the best immunogenic targets for T-cell
recognition.
Actual binding of peptides to an HLA allele can be evaluated by stabilization of HLA expression on the antigen-
processing defective cell line T2 (see, Xue et al., Prostate 30:73-8 (1997) and Peshwa et al., Prostate 36:129-38
(1998)). Immunogenicity of specific peptides can be evaluated in vitro by stimulation of CD8+ cytotoxic T lymphocytes (CTL)
in the presence of antigen presenting cells such as dendritic cells.
It is to be appreciated that every epitope predicted by the BIMAS site, EpimerTM and EpimatrixTM sites, or specified
by the HLA class I or class II motifs available in the art or which become part of the art such as set forth In Table IV (or
determined using World Wide Web site URL syfpeithi.bml-heidelberg.com/, or BIMAS, bimas.dcrtnih.gov/) are to be "applied"
to a 191P4D12(b) protein in accordance with the invention. As used in this context "applied" means that a 191P4D12(b)
protein is evaluated, visually or by computer-based patterns finding methods, as appreciated by those of skill in the
relevant art. Every subsequence of a 191P4D12(b) protein of 8, 9, 10, or 11 amino acid residues that bears an HLA Class I
motif, or a subsequence of 9 or more amino acid residues that bear an HLA Class II motif are within the scope of the
invention.
III.B.) Expression of 191P4D12(b)-related Proteins
In an embodiment described in the examples that follow, 191P4D12(b) can be conveniently expressed in cells
(such as 293T cells) transfected with a commercially available expression vector such as a CMV-driven expression vector
encoding 191P4D12(b) with a C-terminal 6XHis and MYC tag (pcDNA3.1/mycHIS, Invitrogen or Tag5, GenHunter
Corporation, Nashville TN). The Tag5 vector provides an IgGK secretion signal that can be used to facilitate the production
.of a secreted 191P4D12(b) protein in transfected cells. The secreted HIS-tagged 191P4D12(b) In the culture media can be
purified, using a nickel column using standard techniques.
III.C.) Modifications of 191P4D12(b)-related Proteins
00 Modifications of 191P4D12(b)-related proteins such as covalent modifications are included within the scope of this
0 invention. One type of covalent modification includes reacting targeted amino acid residues of a 191P4D12(b) polypeptide
with an organic derivatizing agent that is capable of reacting with selected side chains or the N- or C- terminal residues of a
t 191P4D12(b) protein. Another type of covalent modification of a 191P4D12(b) polypeptide included within the scope of this
invention comprises altering the native glycosylation pattern of a protein of the invention. Another type of covalent
0 modification of 191P4D12(b) comprises linking a 191P4D12(b) polypeptide to one of a variety of nonproteinaceous polymers,
polyethylene glycol (PEG), polypropylene glycol, or polyoxyalkylenes, in the manner set forth in U.S. Patent Nos.
4,640,835; 4,496,689; 4,301,144; 4,670,417; 4,791,192 or 4,179,337.
The 191P4D12(b)-related proteins of the present invention can also be modified to form a chimeric molecule
comprising 191P4D12(b) fused to another, heterologous polypeptide or amino acid sequence. Such a chimeric molecule can
be synthesized chemically or recombinantly. A chimeric molecule can have a protein of the invention fused to another tumor-
00 associated antigen or fragment thereof. Alternatively, a protein in accordance with the invention can comprise a fusion of
S fragments of a 191P4D12(b) sequence (amino or nucleic acid) such that a molecule is created that is not, through its length,
CK directly homologous to the amino or nucleic acid sequences shown in Figure 2 or Figure 3. Such a chimeric molecule can
comprise multiples of the same subsequence of 191P4D12(b). A chimeric molecule can comprise a fusion of a
191P4D12(b)-related protein with a polyhistidine epitope tag, which provides an epitope to which immobilized nickel can
selectively bind, with cytokines or with growth factors. The epitope tag is generally placed at the amino- or carboxyl-
terminus of a 191P4D12(b) protein. In an alternative embodiment, the chimeric molecule can comprise a fusion of a
191P4D12(b)-related protein with an immunoglobulin or a particular region of an immunoglobulin. For a bivalent form of the
chimeric molecule (also referred to as an "immunoadhesin"), such a fusion could be to the Fc region of an IgG molecule. The
Ig fusions preferably include the substitution of a soluble (transmembrane domain deleted or inactivated) form of a
191P4012(b) polypeptide in place of at least one variable region within an Ig molecule. In a preferred embodiment, the
immunoglobulin fusion includes the hinge, CH2 and CH3, or the hinge, CHI, CH2 and CH3 regions of an IgGI molecule. For
the production of immunoglobulin fusions see, U.S. Patent No. 5,428,130 issued June 27, 1995.
III.D.) Uses of 191P4D12(b)-related Proteins
The proteins of the invention have a number of different specific uses. As 191P4D12(b) is highly expressed in
prostate and other cancers, 191P4D12(b)-related proteins are used in methods that assess the status of 191P4D12(b) gene
products in normal versus cancerous tissues, thereby elucidating the malignant phenotype. Typically, polypeptides from
specific regions of a 191P4D12(b) protein are used to assess the presence of perturbations (such as deletions, insertions,
point mutations etc.) in those regions (such as regions containing one or more motifs). Exemplary assays utilize antibodies
or T cells targeting 191P4D12(b)-related proteins comprising the amino acid residues of one or more of the biological motifs
contained within a 191P4D12(b) polypeptide sequence in order to evaluate the characteristics of this region in normal versus
cancerous tissues or to elicit an immune response to the epitope. Alternatively, 191P4D12(b)-related proteins that contain
the amino acid residues of one or more of the biological motifs in a 191P4D12(b) protein are used to screen for factors that
interact with that region of 191P4D12(b).
191P4D12(b) protein fragments/subsequences are particularly useful in generating and characterizing domain-specific
antibodies antibodies recognizing an extracellular or intracellular epitope of a 191P4D12(b) protein), for identifying agents or
cellular factors that bind to 191P4D12(b) or a particular structural domain thereof, and in various therapeutic and diagnostic
contexts, including but not limited to diagnostic assays, cancer vaccines and methods of preparing such vaccines.
Proteins encoded by the 191P4D12(b) genes, or by analogs, homologs or fragments thereof, have a variety of
00 uses, including but not limited to generating antibodies and in methods for identifying ligands and other agents and cellular
O constituents that bind to a 191P4D12(b) gene product. Antibodies raised against a 191P4D12(b) protein or fragment thereof
CN are useful in diagnostic and prognostic assays, and imaging methodologies in the management of human cancers
characterized by expression of 191P4D12(b) protein, such as those listed in Table 1. Such antibodies can be expressed
intracellularly and used in methods of treating patients with such cancers. 191P4D12(b)-related nucleic acids or proteins are
also used in generating HTL or CTL responses.
C Various immunological assays useful for the detection of 191P4D12(b) proteins are used, including but not limited to
various types of radioimmunoassays, enzyme-linked immunosorbent assays (ELISA), enzyme-linked immunofluorescent assays
(ELIFA), immunocytochemical methods, and the like. Antibodies can be labeled and used as immunological imaging reagents
si capable of detecting 191P4D12(b)-expressing cells in radioscintigraphic imaging methods). 191P4D12(b) proteins are also
c particularly useful in generating cancer vaccines, as further described herein.
000 IV.) 191P4D12(b) Antibodies
Another aspect of the invention provides antibodies that bind to 191P4D12(b)-related proteins. Preferred antibodies
specifically bind to a 191P4D12(b)-related protein and do not bind (or bind weakly) to peptides or proteins that are not
191P4D12(b)-related proteins under physiological conditions. In this context, examples of physiological conditions include: 1)
phosphate buffered saline; 2) Tris-buffered saline containing 25mM Tris and 150 mM NaCI; or normal saline NaCI); 4)
animal serum such as human serum; or, 5) a combination of any of 1) through these reactions preferably taking place at pH
altematively in a range of pH 7.0 to 8.0, or altematively in a range of pH 6.5 to 8.5; also, these reactions taking place at a
temperature between 4°C to 370C. For example, antibodies that bind 191P4D12(b) can bind 191P4D12(b)-related proteins such
as the homologs or analogs thereof.
191P4D12(b) antibodies of the invention are particularly useful in cancer (see, Table I) diagnostic and
prognostic assays, and imaging methodologies. Similarly, such antibodies are useful in the treatment, diagnosis, and/or
prognosis of other cancers, to the extent 191P4D12(b) is also expressed or overexpressed in these other cancers.
Moreover, intracellularly expressed antibodies single chain antibodies) are therapeutically useful in treating cancers in
which the expression of 191P4D12(b) is involved, such as advanced or metastatic prostate cancers.
The invention also provides various immunological assays useful for the detection and quantification of 191P4D12(b)
and mutant 191P4D12(b)-related proteins. Such assays can comprise one or more 191P4D12(b) antibodies capable of
recognizing and binding a 191P4012(b)-related protein, as appropriate. These assays are performed within various
immunological assay formats well known in the art, including but not limited to various types of radioimmunoassays, enzyme-
linked immunosorbent assays (ELSA), enzyme-linked immunofluorescent assays (ELIFA), and the like.
Immunological non-antibody assays of the invention also comprise T cell immunogenicity assays (inhibitory or
stimulatory) as well as major histocompatibility complex (MHC) binding assays.
In addition, immunological imaging methods capable of detecting prostate cancer and other cancers expressing
191P4012(b) are also provided by the invention, including but not limited to radioscinligraphic imaging methods using labeled
191P4D12(b) antibodies. Such assays are clinically useful in the detection, monitoring, and prognosis of 191P4D12(b) expressing
cancers such as prostate cancer.
191P4D12(b) antibodies are also used in methods for purifying a 191P4D12(b)-related protein and for isolating
191P4D12(b) homologues and related molecules. For example, a method of purifying a 191P4D12(b)-related protein comprises
incubating a 191P4D12(b) antibody, which has been coupled to a solid matrix, with a lysate or other solution containing a
191P4D12(b)-related protein under conditions that permit the 191P4D12(b) antibody to bind to the 191P4D12(b)-related protein;
washing the solid matrix to eliminate impurities; and eluting the 191P4D12(b)-related protein from the coupled antibody. Other
uses of 191P4D12(b) antibodies in accordance with the invention include generating anti-idiotypic antibodies that mimic a
00 191P4D12(b) protein.
SVarious methods for the preparation of antibodies are well known in the art. For example, antibodies can be prepared
by Immunizing a suitable mammalian host using a 191P4D12(b)-related protein, peptide, or fragment, in isolated or
c immunoconjugated form (Antibodies: A Laboratory Manual, CSH Press, Eds., Harlow, and Lane (1988); Harlow, Antibodies, Cold
Spring Harbor Press, NY (1989)). In addition, fusion proteins of 191P4D12(b) can also be used, such as a 191P4D12(b) GST-
0 fusion protein. In a particular embodiment, a GST fusion protein comprising all or most of the amino acid sequence of Figure 2 or
Figure 3 is produced, then used as an immunogen to generate appropriate antibodies. In another embodiment, a 191P4012(b)-
related protein is synthesized and used as an immunogen.
In addition, naked DNA immunization techniques known in the art are used (with or without purified 191P4D12(b)-
related protein or 191P4D12(b) expressing cells) to generate an immune response to the encoded immunogen (for review, see
0 Donnelly et al., 1997, Ann. Rev. Immunol. 15: 617-648).
00 The amino acid sequence of a 191P4D12(b) protein as shown in Figure 2 or Figure 3 can be analyzed to select specific
regions of the 191P4D12(b) protein for generating antibodies. For example, hydrophobicity and hydrophilicity analyses of a
CN 191P4D12(b) amino acid sequence are used to identify hydrophilic regions in the 191P4D12(b) structure. Regions of a
191P4D12(b) protein that show immunogenic structure, as well as other regions and domains, can readily be identified using
various other methods known in the art, such as Chou-Fasman, Gamier-Robson, Kyte-Doolittle, Eisenberg, Karplus-Schultz or
Jameson-Wolf analysis. Hydrophilicity profiles can be generated using the method of Hopp, T.P. and Woods, 1981,
Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828. Hydropathlcity profiles can be generated using the method of Kyte, J. and
Doolittle, 1982, J. Mol. Biol. 157:105-132. Percent Accessible Residues profiles can be generated using the
method of Janin 1979, Nature 277:491-492. Average Flexibility profiles can be generated using the method of Bhaskaran
Ponnuswamy 1988, Int. J. Pept. Protein Res. 32:242-255. Beta-turn profiles can be generated using the method of
Deleage, Roux 1987, Protein Engineering 1:289-294. Thus, each region identified by any of these programs or methods
is within the scope of the present invention. Methods for the generation of 191P4D12(b) antibodies are further illustrated by way
of the examples provided herein. Methods for preparing a protein or polypeptide for use as an immunogen are well known in the
art. Also well known in the art are methods for preparing immunogenic conjugates of a protein with a carrier, such as BSA, KLH or
other carrier protein. In some circumstances, direct conjugation using, for example, carbodiimide reagents are used; in other
instances linking reagents such as those supplied by Pierce Chemical Co., Rockford, IL, are effective. Administration of a
191P4D12(b) immunogen is often conducted by injection over a suitable time period and with use of a suitable adjuvant, as is
understood in the art. During the immunization schedule, titers of antibodies can be taken to determine adequacy of antibody
formation.
191P4D12(b) monoclonal antibodies can be produced by various means well known in the art. For example,
immortalized cell lines that secrete a desired monoclonal antibody are prepared using the standard hybridoma technology of
Kohler and Milstein or modifications that immortalize antibody-producing B cells, as is generally known. Immortalized cell lines
that secrete the desired antibodies are screened by immunoassay in which the antigen is a 191P4D12(b)-related protein. When
the appropriate immortalized cell culture is identified, the cells can be expanded and antibodies produced either from in vitro
cultures or from ascites fluid.
The antibodies or fragments of the invention can also be produced, by recombinant means. Regions that bind
specifically to the desired regions of a 191P4D12(b) protein can also be produced in the context of chimeric or complementarity-
determining region (CDR) grafted antibodies of multiple species origin. Humanized or human 191P4D12(b) antibodies can also
be produced, and are preferred for use in therapeutic contexts. Methods for humanizing murine and other non-human antibodies,
by substituting one or more of the non-human antibody CDRs for corresponding human antibody sequences, are well known (see
00 for example, Jones et al., 1986, Nature 321: 522-525; Riechmann et 1988, Nature 332: 323-327; Verhoeyen et al., 1988,
Science 239: 1534-1536). See also, Carter et 1993, Proc. Natl. Acad. Sd. USA 89: 4285 and Sims et al., 1993, J. Immunol.
CN 151:2296.
Methods for producing fully human monoclonal antibodies include phage display and transgenic methods (for review,
see Vaughan et al., 1998, Nature Biotechnology 16: 535-539). Fully human 191P4D12(b) monoclonal antibodies can be
generated using cloning technologies employing large human Ig gene combinatorial libraries phage display) (Griffiths and
1 Hoogenboom, Building an in vitro immune system: human antibodies from phage display libraries. In: Protein Engineering of
Antibody Molecules for Prophylactic and Therapeutic Applications in Man, Clark, M. Nottingham Academic, pp 45-64 (1993);
I> Burton and Barbas, Human Antibodies from combinatorial libraries. Id., pp 65-82). Fully human 191P4D12(b) monoclonal
K antibodies can also be produced using transgenic mice engineered to contain human Immunoglobulin gene loci as described in
PCT Patent Application W098124893, Kucherlapati and Jakobovits et al., published December 3, 1997 (see also, Jakobovits,
CN 1998, Exp. Opin. Invest. Drugs 607-614; U.S. patents 6,162,963 issued 19 December 2000; 6,150,584 issued 12 November000 2000; and, 6,114598 issued 5 September 2000). This method avoids the in vitro manipulation required with phage display
technology and efficiently produces high affinity authentic human antibodies.
Reactivity of 191P4D12(b) antibodies with a 191P4D12(b)-related protein can be established by a number of well
known means, including Western blot, Immunoprecipitation, ELISA, and FACS analyses using, as appropriate, 191P4D12(b)-
related proteins, 191P4D12(b)-expressing cells or extracts thereof. A 191P4D12(b) antibody or fragment thereof can be
labeled with a detectable marker or conjugated to a second molecule. Suitable detectable markers include, but are not
limited to, a radioisotope, a fluorescent compound, a bioluminescent compound, chemiluminescent compound, a metal
chelator or an enzyme. Further, bi-specific antibodies specific for two or more 191P4D12(b) epitopes are generated using
methods generally known in the art. Homodimeric antibodies can also be generated by cross-linking techniques known in
the art Wolff et al., Cancer Res. 53: 2560-2565).
191P4D12(b) Cellular Immune Responses
The mechanism by which T cells recognize antigens has been delineated. Efficacious peptide epitope vaccine
compositions of the invention induce a therapeutic or prophylactic immune responses in very broad segments of the world-
wide population. For an understanding of the value and efficacy of compositions of the invention that induce cellular immune
responses, a brief review of immunology-related technology is provided.
A complex of an HLA molecule and a peptidic antigen acts as the ligand recognized by HLA-restricted T cells
(Buus, S. etal., Cell 47:1071, 1986; Babbitt, B. P. et al., Nature 317:359, 1985; Townsend, A. and Bodmer, Annu. Rev.
Immunol. 7:601, 1989; Germain, R. Annu. Rev. Immunol. 11:403,1993). Through the study of single amino acid
substituted antigen analogs and the sequencing of endogenously bound, naturally processed peptides, critical residues that
correspond to motifs required for specific binding to HLA antigen molecules have been identified and are set forth in Table IV
(see also, Southwood, et al., J. Immunol. 160:3363,1998; Rammensee, et al., Immunogenetics 41:178, 1995;
Rammensee et al., SYFPEITHI, access via World Wide Web at URL (134.2.96.221/scrpts.hlaserver.dll/home.htm); Sette, A.
and Sidney, J. Curr. Opin. Immunol. 10:478, 1998; Engelhard, V. Curr. Opin. Immunol. 6:13, 1994; Sette, A. and Grey, H.
Curr. Opin. Immunol. 4:79,1992; Sinigaglia, F. and Hammer, J. Curr. Biol. 6:52, 1994; Ruppert et al., Cell 74:929-937,
1993; Kondo et al., J. Immunof. 155:4307-4312, 1995; Sidney et al., J. Immunol. 157:3480-3490, 1996; Sidney et al., Human
Immunol. 45:79-93, 1996; Sette, A. and Sidney, J. Immunogenetics 1999 Nov; 50(3-4):201-12, Review).
Furthermore, x-ray crystallographic analyses of HLA-peptide complexes have revealed pockets within the peptide
binding cleft/groove of HLA molecules which accommodate, in an allele-specific mode, residues borne by peptide ligands;
these residues in turn determine the HLA binding capacity of the peptides in which they are present. (See, Madden,
D.R. Annu. Rev. Immunol. 13:587,1995; Smith, et Immunity 4:203, 1996; Fremont et al., Immunity 8:305,1998; Stem et
00 Structure 2:245, 1994; Jones, E.Y. Curr. Opin. Immunol. 9:75,1997; Brown, J. H. et Nature 364:33, 1993; Guo, H. C.O
et al., Proc. Natl. Acad. Sci. USA 90:8053, 1993; Guo, H. C. et Nature 360:364, 1992; Silver, M. L. et al., Nature 360:367,
S1992; Matsumura, M. et Science 257:927, 1992; Madden et al., Cell 70:1035, 1992; Fremont, D. H. et al., Science
c 257:919, 1992; Saper, M. Bjorkman, P. J. and Wiley, D. J. Mol. Biol. 219:277, 1991.)
Accordingly, the definition of class I and class II allele-specific HLA binding motifs, or class I or class II supermotifs
0 allows identification of regions within a protein that are correlated with binding to particular HLA antigen(s).
Thus, by a process of HLA motif Identification, candidates for epitope-based vaccines have been identified; such
candidates can be further evaluated by HLA-peptide binding assays to determine binding affinity and/or the time period of
association of the epitope and its corresponding HLA molecule. Additional confirmatory work can be performed to select,
S amongst these vaccine candidates, epitopes with preferred characteristics in terms of population coverage, and/or
0 immunogenicity.
00 Various strategies can be utilized to evaluate cellular immunogeniclty, including:
S1) Evaluation of primary T cell cultures from normal individuals (see, Wentworth, P. A. et al., Mol. Immunol.
CN" 32:603, 1995; Celis, E. et al., Proc. Natl. Acad. Sci. USA 91:2105, 1994; Tsai, V. et al., J. Immunol. 158:1796,1997;
Kawashima, I. et al., Human Immunol. 59:1, 1998). This procedure Involves the stimulation of peripheral blood lymphocytes
(PBL) from normal subjects with a test peptide in the presence of antigen presenting cells in vitro over a period of several
weeks. T cells specific for the peptide become activated during this time and are detected using, a lymphokine- or
51Cr-release assay Involving peptide sensitized target cells.
2) Immunization of HLA transgenic mice (see, Wentworth, P. A. et J. Immunol. 26:97, 1996; Wentworth, P.
A. et Int. Immunol. 8:651, 1996; Alexander, J. et J. Immunol. 159:4753, 1997). For example, in such methods
peptides in incomplete Freund's adjuvant are administered subcutaneously to HLA transgenic mice. Several weeks following
immunization, splenocytes are removed and cultured in vitro in the presence of test peptide for approximately one week.
Peptide-specific T cells are detected using, a 51Cr-release assay involving peptide sensitized target cells and target
cells expressing endogenously generated antigen.
3) Demonstration of recall T cell responses from immune individuals who have been either effectively vaccinated
and/or from chronically ill patients (see, Rehermann, B. etal., J. Exp. Med. 181:1047, 1995; Doolan, D. L. e al.,
Immunity 7:97, 1997; Bertoni, R. et J. Clin. Invest. 100:503,1997; Threlkeld, S. C. et J. Immunol. 159:1648, 1997;
Diepolder, H. M. et J. Virol. 71:6011, 1997). Accordingly, recall responses are detected by culturing PBL from subjects
that have been exposed to the antigen due to disease and thus have generated an immune response "naturally", or from
patients who were vaccinated against the antigen. PBL from subjects are cultured in vitro for 1-2 weeks in the presence of
test peptide plus antigen presenting cells (APC) to allow activation of "memory" T cells, as compared to "naive" T cells. At
the end of the culture period, T cell activity is detected using assays including 5 1Cr release involving peptide-sensitized
targets, T cell proliferation, or lymphokine release.
VI.) 191P4D12(b) Transgenic Animals
Nucleic acids that encode a 191P4D12(b)-related protein can also be used to generate either transgenic animals or
"knock out" animals that, in turn, are useful in the development and screening of therapeutically useful reagents. In
accordance with established techniques, cDNA encoding 191P4D12(b) can be used to clone genomic DNA that encodes
191P4D12(b). The cloned genomic sequences can then be used to generate transgenic animals containing cells that
express DNA that encode 191P4D12(b). Methods for generating transgenic animals, particularly animals such as mice or
rats, have become conventional in the art and are described, for example, in U.S. Patent Nos. 4,736,866 issued 12 April
S 1988, and 4,870,009 issued 26 September 1989. Typically, particular cells would be targeted for 191P4D12(b) transgene
0 incorporation with tissue-specific enhancers.
CK Transgenic animals that include a copy of a transgene encoding 191P4D12(b) can be used to examine the effect
of increased expression of DNA that encodes 191P4D12(b). Such animals can be used as tester animals for reagents
thought to confer protection from, for example, pathological conditions associated with Its overexpression. In accordance
with this aspect of the invention, an animal is treated with a reagent and a reduced incidence of a pathological condition,
CN compared to untreated animals that bear the transgene, would indicate a potential therapeutic intervention for the
pathological condition.
Alternatively, non-human homologues of 191P4D12(b) can be used to construct a 191P4D12(b) "knock out" animal
that has a defective or altered gene encoding 191P4D12(b) as a result of homologous recombination between the
C endogenous gene encoding 191P4D12(b) and altered genomic DNA encoding 191P4D12(b) introduced into an embryonic
CK cell of the animal. For example, cDNA that encodes 191P4D12(b) can be used to clone genomic DNA encoding00
191P4012(b) in accordance with established techniques. A portion of the genomic DNA encoding 191P4D12(b) can be
deleted or replaced with another gene, such as a gene encoding a selectable marker that can be used to monitor integration.
Typically, several kilobases of unaltered flanking DNA (both at the 5' and 3' ends) are included in the vector (see, e.g.,
Thomas and Capecchi, Cell, 51:503 (1987) for a description of homologous recombination vectors). The vector is introduced
into an embryonic stem cell line by electroporation) and cells in which the introduced DNA has homologously
recombined with the endogenous DNA are selected (see, Li et al., Cell, 69:915 (1992)). The selected cells are then
injected into a blastocyst of an animal a mouse or rat) to form aggregation chimeras (see, Bradley, in
Teratocarcinomas and Embryonic Stem Cells: A Practical Approach, E. J. Robertson, ed. (IRL, Oxford, 1987), pp. 113-152).
A chimeric embryo can then be implanted into a suitable pseudopregnant female foster animal, and the embryo brought to
term to create a "knock out" animal. Progeny harboring the homologously recombined DNA in their germ cells can be
identified by standard techniques and used to breed animals in which all cells of the animal contain the homologously
recombined DNA. Knock out animals can be characterized, for example, for their ability to defend against certain
pathological conditions or for their development of pathological conditions due to absence of a 191 P4D12(b) polypeptide.
VII.) Methods for the Detection of 191P4D12(b)
Another aspect of the present invention relates to methods for detecting 191P4D12(b) polynucleotides and
191P4D12(b)-related proteins, as well as methods for identifying a cell that expresses 191P4D12(b). The expression profile of
191P4D12(b) makes it a diagnostic marker for metastasized disease. Accordingly, the status of 191P4D12(b) gene products
provides information useful for predicting a variety of factors including susceptibility to advanced stage disease, rate of
progression, and/or tumor aggressiveness. As discussed in detail herein, the status of 191P4D12(b) gene products in patient
samples can be analyzed by a variety protocols that are well known In the art including immunohistochemical analysis, the variety
of Northem blotting techniques including in situ hybridization, RT-PCR analysis (for example on laser capture micro-dissected
samples), Western blot analysis and tissue array analysis.
More particularly, the invention provides assays for the detection of 191P4D12(b) polynudeotides in a biological
sample, such as serum, bone, prostate, and other tissues, urine, semen, cell preparations, and the like. Detectable 191P4D12(b)
polynucleotides include, for example, a 191P4D12(b) gene or fragment thereof, 191P4D12(b) mRNA, alternative splice variant
191P4D12(b) mRNAs, and recombinant DNA or RNA molecules that contain a 191P4D12(b) polynucleotide. A number of
methods for amplifying andlor detecting the presence of 191P4D12(b) polynucleotides are well known in the art and can be
employed in the practice of this aspect of the invention.
In one embodiment, a method for detecting a 191P4D12(b) mRNA in a biological sample comprises producing cDNA
from the sample by reverse transcription using at least one primer; amplifying the cDNA so produced using a 191P4D12(b)
00 polynucleotides as sense and antisense primers to amplify 191P4D12(b) cDNAs therein; and detecting the presence of the
amplified 191P4D12(b) cDNA. Optionally, the sequence of the amplified 191P4D12(b) cDNA can be determined.
In another embodiment, a method of detecting a 191P4D12(b) gene in a biological sample comprises first isolating
c genomic DNA from the sample; amplifying the Isolated genomic DNA using 191P4D12(b) polynucleotides as sense and
antisense primers; and detecting the presence of the amplified 191P4D12(b) gene. Any number of appropriate sense and
S antisense probe combinations can be designed from a 191P4D12(b) nucleolide sequence (see, Figure 2) and used for
this purpose.
The invention also provides assays for detecting the presence of a 191P4D12(b) protein in a tissue or other biological
sample such as serum, semen, bone, prostate, urine, cell preparations, and the like. Methods for detecting a 191P4D12(b)-
CKl related protein are also well known and include, for example, immunoprecipitation, immunohistochemical analysis, Western blot
0 analysis, molecular binding assays, ELISA, ELIFA and the like. For example, a method of detecting the presence of a
00 191P4D12(b)-related protein in a biological sample comprises first contacting the sample with a 191P4D12(b) antibody, a
S 191P4D12(b)-reactive fragment thereof, or a recombinant protein containing an antigen-binding region of a 191P4D12(b)
C1 antibody; and then detecting the binding of 191P4D12(b)-related protein in the sample.
Methods for Identifying a cell that expresses 191P4D12(b) are also within the scope of the invention. In one
embodiment, an assay for identifying a cell that expresses a 191P4D12(b) gene comprises detecting the presence of
191P4D12(b) mRNA in the cell. Methods for the detection of particular mRNAs in cells are well known and include, for example,
hybridization assays using complementary DNA probes (such as in situ hybridization using labeled 191 P4D12(b) riboprobes,
Northern blot and related techniques) and various nucleic acid amplification assays (such as RT-PCR using complementary
primers specific for 191P4D12(b), and other amplification type detection methods, such as, for example, branched DNA, SISBA,
TMA and the like). Alternatively, an assay for identifying a cell that expresses a 191P4D12(b) gene comprises detecting the
presence of 191P4D12(b)-related protein in the cell or secreted by the cell. Various methods for the detection of proteins are well
known in the art and are employed for the detection of 191P4D12(b)-related proteins and cells that express 191P4D12(b)-related
proteins.
191P4D12(b) expression analysis is also useful as a tool for identifying and evaluating agents that modulate
191P4D12(b) gene expression. For example, 191P4D12(b) expression is significantly upregulated in prostate cancer, and is
expressed in cancers of the tissues listed in Table I. Identification of a molecule or biological agent that inhibits 191P4D12(b)
expression or over-expression in cancer cells is of therapeutic value. For example, such an agent can be identified by using
a screen that quantifies 191P4D12(b) expression by RT-PCR, nucleic acid hybridization or antibody binding.
VIII.) Methods for Monitoring the Status of 191P4D12(b)-related Genes and Their Products
Oncogenesis is known to be a multistep process where cellular growth becomes progressively dysregulated and
cells progress from a normal physiological state to precancerous and then cancerous states (see, Alers et al., Lab
Invest. 77(5): 437-438 (1997) and Isaacs et al., Cancer Surv. 23:19-32 (1995)). In this context, examining a biological
sample for evidence of dysregulated cell growth (such as aberrant 191P4D12(b) expression in cancers) allows for early
detection of such aberrant physiology, before a pathologic state such as cancer has progressed to a stage that therapeutic
options are more limited and or the prognosis is worse. In such examinations, the status of 191P4D12(b) in a biological
sample of interest can be compared, for example, to the status of 191P4D12(b) in a corresponding normal sample a
sample from that individual or alternatively another individual that is not affected by a pathology). An alteration in the status
of 191P4D12(b) in the biological sample (as compared to the normal sample) provides evidence of dysregulated cellular
growth. In addition to using a biological sample that is not affected by a pathology as a normal sample, one can also use a
00 predetermined normative value such as a predetermined normal level of mRNA expression (see, Grever et al., J. Comp.
S Neurol. 1996 Dec 9; 376(2): 306-14 and U.S. Patent No. 5,837,501) to compare 191P4D12(b) status in a sample.
CK1 The term "status" in this context Is used according to its art accepted meaning and refers to the condition or state of a
gene and its products. Typically, skilled artisans use a number of parameters to evaluate the condition or state of a gene and Its
products. These include, but are not limited to the location of expressed gene products (including the location of 191P4D12(b)
O expressing cells) as well as the level, and biological activity of expressed gene products (such as 191P4012(b) mRNA,
CI polynucleotides and polypeptides). Typically, an alteration in the status of 191P4D12(b) comprises a change in the location
of 191P4D12(b) and/or 191P4D12(b) expressing cells and/or an increase in 191P4D12(b) mRNA and/or protein expression.
191P4D12(b) status in a sample can be analyzed by a number of means well known in the art, including without
aC limitation, immunohistochemical analysis, in situ hybridization, RT-PCR analysis on laser capture micro-dissected samples,
Western blot analysis, and tissue array analysis. Typical protocols for evaluating the status of a 191P4D12(b) gene and gene
rC products are found, for example in Ausubel et al. eds., 1995, Current Protocols In Molecular Biology, Units 2 (Northern000 Blotting), 4 (Southern Blotting), 15 (Immunoblotting) and 18 (PCR Analysis). Thus, the status of 191P4D12(b) in a biological
sample is evaluated by various methods utilized by skilled artisans including, but not limited to genomic Southern analysis (to
examine, for example perturbations in a 191P4D12(b) gene), Northern analysis and/or PCR analysis of 191P4D12(b) mRNA
(to examine, for example alterations in the polynucleotide sequences or expression levels of 191P4D12(b) mRNAs), and,
Western and/or immunohistochemical analysis (to examine, for example alterations in polypeptide sequences, alterations in
polypeptide localization within a sample, alterations in expression levels of 191P4D12(b) proteins and/or associations of
191P4D12(b) proteins with polypeptide binding partners). Detectable 191P4D12(b) polynucleotides include, for example, a
191P4D12(b) gene or fragment thereof, 191P4D12(b) mRNA, alternative splice variants, 191P4D12(b) mRNAs, and recombinant
DNA or RNA molecules containing a 191P4D12(b) polynucleotide.
The expression profile of 191P4D12(b) makes it a diagnostic marker for local and/or metastasized disease, and
provides information on the growth or oncogenic potential of a biological sample. In particular, the status of 191P4D12(b) provides
information useful for predicting susceptibility to particular disease stages, progression, and/or tumor aggressiveness. The
invention provides methods and assays for determining 191P4D12(b) status and diagnosing cancers that express 191P4D12(b),
such as cancers of the tissues listed in Table I. For example, because 191P4D12(b) mRNA is so highly expressed in prostate and
other cancers relative to normal prostate tissue, assays that evaluate the levels of 191P4D12(b) mRNA transcripts or proteins in a
biological sample can be used to diagnose a disease associated with 191P4D12(b) dysregulation, and can provide prognostic
information useful in defining appropriate therapeutic options.
The expression status of 191P4D12(b) provides information including the presence, stage and location of dysplastic,
precancerous and cancerous cells, predicting susceptibility to various stages of disease, and/or for gauging tumor
aggressiveness. Moreover, the expression profile makes it useful as an imaging reagent for metastasized disease.
Consequently, an aspect of the invention is directed to the various molecular prognostic and diagnostic methods for examining the
status of 191P4D12(b) in biological samples such as those from individuals suffering from, or suspected of suffering from a
pathology characterized by dysregulated cellular growth, such as cancer.
As described above, the status of 191P4D12(b) in a biological sample can be examined by a number of well-known
procedures in the art. For example, the status of 191P4012(b) in a biological sample taken from a specific location in the
body can be examined by evaluating the sample for the presence or absence of 191P4D12(b) expressing cells those
that express 191P4D12(b) mRNAs or proteins). This examination can provide evidence of dysregulated cellular growth, for
example, when 191P4D12(b)-expressing cells are found in a biological sample that does not normally contain such cells
(such as a lymph node), because such alterations in the status of 191P4D12(b) in a biological sample are often associated
with dysregulated cellular growth. Specifically, one indicator of dysregulated cellular growth is the metastases of cancer cells
from an organ of origin (such as the prostate) to a different area of the body (such as a lymph node). In this context,
00 evidence of dysregulated cellular growth is important for example because occult lymph node metastases can be detected in
a substantial proportion of patients with prostate cancer, and such metastases are associated with known predictors of
S disease progression (see, Murphy et al., Prostate 42(4): 315-317 (2000);Su et al., Semin. Surg. Oncol. 18(1): 17-28
(2000) and Freeman et al., J Urol 1995 Aug 154(2 Pt 1):474-8).
In one aspect, the invention provides methods for monitoring 191P4D12(b) gene products by determining the
0 status of 191P4D12(b) gene products expressed by cells from an individual suspected of having a disease associated with
dysregulated cell growth (such as hyperplasia or cancer) and then comparing the status so determined to the status of
191P4D12(b) gene products in a corresponding normal sample. The presence of aberrant 191P4012(b) gene products in
S the test sample relative to the normal sample provides an indication of the presence of dysregulated cell growth within the
cells of the individual.
In another aspect, the invention provides assays useful in determining the presence of cancer in an individual,
00 comprising detecting a significant increase in 191P4D12(b) mRNA or protein expression in a test cell or tissue sample
relative to expression levels in the corresponding normal cell or tissue. The presence of 191P4D12(b) mRNA can, for
Cl example, be evaluated in tissues including but not limited to those listed in Table I. The presence of significant 191P4D12(b).
expression in any of these tissues is useful to indicate the emergence, presence and/or severity of a cancer, since the
corresponding normal tissues do not express 191P4D12(b) mRNA or express it at lower levels.
In a related embodiment, 191P4D12(b) status is determined at the protein level rather than at the nucleic acid level. For
example, such a method comprises determining the level of 191P4D12(b) protein expressed by cells in a test tissue sample and
comparing the level so determined to the level of 191P4D12(b) expressed in a corresponding normal sample. In one
embodiment, the presence of 191P4D12(b) protein is evaluated, for example, using immunohistochemical methods.
191P4D12(b) antibodies or binding partners capable of detecting 191P4D12(b) protein expression are used in a variety of assay
formats well known in the art for this purpose.
In a further embodiment, one can evaluate the status of 191P4D12(b) nudeotide and amino acid sequences in a
biological sample in order to identify perturbations in the structure of these molecules. These perturbations can include insertions,
deletions, substitutions and the like. Such evaluations are useful because perturbations in the nudeotide and amino acid
sequences are observed in a large number of proteins associated with a growth dysregulated phenotype (see, Marrogi et
at., 1999, J. Cutan. Pathol. 26(8):369-378). For example, a mutation in the sequence of 191P4D12(b) may be indicative of the
presence or promotion of a tumor. Such assays therefore have diagnostic and predictive value where a mutation in 191P4D12(b)
indicates a potential loss of function or increase in tumor growth.
A wide variety of assays for observing perturbations in nudeotide and amino acid sequences are well known in the art
For example, the size and structure of nuceic acid or amino acd sequences of 191P4D12(b) gene products are observed by the
Northern, Southern, Western, PCR and DNA sequencing protocols discussed herein. In addition, other methods for observing
perturbations in nucleotide and amino acid sequences such as single strand conformation polymorphism analysis are well known
in the art (see, U.S. Patent Nos. 5,382,510 issued 7 September 1999, and 5,952,170 issued 17 January 1995).
Additionally, one can examine the methylation status of a 191P4D12(b) gene in a biological sample. Aberrant
demethylation andlor hypermethylation of CpG islands in gene 5' regulatory regions frequently occurs in immortalized and
transformed cells, and can result in altered expression of various genes. For example, promoter hypermethylation of the pi-class
glutathione S-transferase (a protein expressed in normal prostate but not expressed in >90% of prostate carcinomas)
appears to permanently silence transcription of this gene and is the most frequently detected genomic alteration in prostate
carcinomas (De Marzo et al., Am. J. Pathol. 155(6): 1985-1992 (1999)). In addition, this alteration is present in at least
of cases of high-grade prostatic intraepithelial neoplasia (PIN) (Brooks et al., Cancer Epidemiol. Biomarkers Prev., 1998,
7:531-536). In another example, expression of the LAGE-I tumor specific gene (which is not expressed in normal prostate
;0 but is expressed in 25-50% of prostate cancers) is Induced by deoxy-azacytidine in lymphoblastoid cells, suggesting that
tumoral expression is due to demethylation (Lethe et al., Int. J. Cancer 76(6): 903-908 (1998)). A variety of assays for
examining methylation status of a gene are well known in the art For example, one can utilize, in Southern hybridization
S approaches, methylation-sensitive restriction enzymes that cannot cleave sequences that contain methylated CpG sites to assess
the methylation status of CpG islands. In addition, MSP (methylation specific PCR) can rapidly profile the methylation status of all
the CpG sites present in a CpG island of a given gene. This procedure involves initial modification of DNA by sodium blsulfite
(which will convert all unmethylated cytosines to uracil) followed by amplification using primers specific for methylated versus
unmethylated DNA. Protocols involving methylation interference can also be found for example in Current Protocols In Molecular
Biology, Unit 12, Frederick M. Ausubel et al. eds., 1995.C Gene amplification is an additional method for assessing the status of 191P4D12(b). Gene amplification is
measured in a sample directly, for example, by conventional Southern blotting or Northern blotting to quantitate the
00 transcription of mRNA (Thomas, 1980, Proc. Natl. Acad. Sci. USA, 77:5201-5205), dot blotting (DNA analysis), or in situ
hybridization, using an appropriately labeled probe, based on the sequences provided herein. Alternatively, antibodies are
CK" employed that recognize specific duplexes, including DNA duplexes, RNA duplexes, and DNA-RNA hybrid duplexes or
DNA-protein duplexes. The antibodies in turn are labeled and the assay carried out where the duplex is bound to a surface,
so that upon the formation of duplex on the surface, the presence of antibody bound to the duplex can be detected.
Biopsied tissue or peripheral blood can be conveniently assayed for the presence of cancer cells using for example,
Northern, dot blot or RT-PCR analysis to detect 191P4D12(b) expression. The presence of RT-PCR amplifiable 191P4D12(b)
mRNA provides an indication of the presence of cancer. RT-PCR assays are well known in the art. RT-PCR detection assays for
tumor cells in peripheral blood are currently being evaluated for use in the diagnosis and management of a number of human solid
tumors. In the prostate cancer field, these include RT-PCR assays for the detection of cells expressing PSA and PSM (Verkaik et
al., 1997, Urol. Res. 25:373-384; Ghossein et al., 1995, J. Clin. Oncol. 13:1195-2000; Heston etal., 1995, Clin. Chem. 41:1687-
1688).
A further aspect of the invention is an assessment of the susceptibility that an individual has for developing cancer. In
one embodiment, a method for predicting susceptibility to cancer comprises detecting 191P4D12(b) mRNA or 191P4D12(b)
protein in a tissue sample, its presence indicating susceptibility to cancer, wherein the degree of 191P4D12(b) mRNA expression
correlates to the degree of susceptibility. In a specific embodiment, the presence of 191P4D12(b) in prostate or other tissue is
examined, with the presence of 191P4D12(b) in the sample providing an indication of prostate cancer susceptibility (or the
emergence or existence of a prostate tumor). Similarly, one can evaluate the integrity 191P4D12(b) nuceotide and amino acid
sequences in a biological sample, in order to identify perturbations in the structure of these molecules such as insertions,
deletions, substitutions and the like. The presence of one or more perturbations in 191P4D12(b) gene products in the sample is
an indication of cancer susceptibility (or the emergence or existence of a tumor).
The invention also comprises methods for gauging tumor aggressiveness. In one embodiment, a method for gauging
aggressiveness of a tumor comprises determining the level of 191P4D12(b) mRNA or 191P4D12(b) protein expressed by tumor
cells, comparing the level so determined to the level of 191P4D12(b) mRNA or 191P4D12(b) protein expressed in a
corresponding normal tissue taken from the same individual or a normal tissue reference sample, wherein the degree of191P4D12(b) mRNA or 191 P4D12(b) protein expression in the tumor sample relative to the normal sample indicates the degree
of aggressiveness. In a specific embodiment, aggressiveness of a tumor is evaluated by determining the extent to which
191P4D12(b) is expressed in the tumor cells, with higher expression levels indicating more aggressive tumors. Anotherembodiment is the evaluation of the integrity of 191P4D12(b) nudeotide and amino acid sequences in a biological sample, in
order to identify perturbations in the structure of these molecules such as insertions, deletions, substitutions and the like. The
presence of one or more perturbations indicates more aggressive tumors.
C0 Another embodiment of the invention is directed to methods for observing the progression of a malignancy in an
S individual over time. In one embodiment, methods for observing the progression of a malignancy in an individual over time
comprise determining the level of 191P4D12(b) mRNA or 191P4D12(b) protein expressed by cells in a sample of the tumor,
comparing the level so determined to the level of 191P4D12(b) mRNA or 191P4D12(b) protein expressed in an equivalent tissue
S sample taken from the same individual at a different time, wherein the degree of 191P4D12(b) mRNA or 191P4D12(b) protein
expression in the tumor sample over time provides information on the progression of the cancer. In a specific embodiment, the
S progression of a cancer is evaluated by determining 191P4D12(b) expression in the tumor cells over time, where Increased
expression over time indicates a progression of the cancer. Also, one can evaluate the integrity 191P4D12(b) nudeotide and
amino acid sequences in a biological sample in order to identify perturbations in the structure of these molecules such as
insertions, deletions, substitutions and the like, where the presence of one or more perturbations indicates a progression of the
cancer.
CK1 The above diagnostic approaches can be combined with any one of a wide variety of prognostic and diagnostic00
protocols known in the art. For example, another embodiment of the invention is directed to methods for observing a coincidence
between the expression of 191P4D12(b) gene and 191P4D12(b) gene products (or perturbations in 191P4D12(b) gene and
191P4D12(b) gene products) and a factor that is associated with malignancy, as a means for diagnosing and prognosticating the
status of a tissue sample. A wide variety of factors associated with malignancy can be utilized, such as the expression of genes
associated with malignancy PSA, PSCA and PSM expression for prostate cancer etc.) as well as gross cytological
observations (see, Bocking et al., 1984, Anal. Quant Cytol. 6(2):74-88; Epstein, 1995, Hum. Pathol. 26(2):223-9; Thorson
et al., 1998, Mod. Pathol. 11(6):543-51; Baisden et al., 1999, Am. J. Surg. Pathol. 23(8):918-24). Methods for observing a
coincidence between the expression of 191P4D12(b) gene and 191P4D12(b) gene products (or perturbations in 191P4012(b)
gene and 191P4D12(b) gene products) and another factor that is associated with malignancy are useful, for example, because the
presence of a set of specific factors that coincide with disease provides information crucial for diagnosing and prognosticating the
status of a tissue sample.
In one embodiment, methods for observing a coincidence between the expression of 191P4D12(b) gene and
191P4D12(b) gene products (or perturbations in 191P4D12(b) gene and 191P4D12(b) gene products) and another factor
associated with malignancy entails detecting the overexpression of 191P4D12(b) mRNA or protein in a tissue sample, detecting
the overexpression of PSA mRNA or protein in a tissue sample (or PSCA or PSM expression), and observing a coincidence of
191P4D12(b) mRNA or protein and PSA mRNA or protein overexpression (or PSCA or PSM expression). In a specific
embodiment the expression of 191P4D12(b) and PSA mRNA in prostate tissue is examined, where the coincidence of
191P4D12(b) and PSA mRNA overexpression in the sample indicates the existence of prostate cancer, prostate cancer
susceptibility or the emergence or status of a prostate tumor.
Methods for detecting and quantifying the expression of 191P4D12(b) mRNA or protein are described herein, and
standard nudeic acid and protein detection and quantification technologies are well known in the art. Standard methods for the
detection and quantification of 191P4D12(b) mRNA include in situ hybridization using labeled 191P4D12(b) riboprobes, Northern
blot and related techniques using 191P4D12(b) polynucleotide probes, RT-PCR analysis using primers specific for 191P4D12(b),
and other amplification type detection methods, such as, for example, branched DNA, SISBA, TMA and the like. In a specific
embodiment, semi-quantitative RT-PCR is used to detect and quantify 191P4D12(b) mRNA expression. Any number of primers
capable of amplifying 191P4D12(b) can be used for this purpose, including but not limited to the various primer sets specifically
described herein. In a specific embodiment, polyclonal or monoclonal antibodies specifically reactive with the wild-type
191P4D12(b) protein can be used in an immunohistochemical assay of biopsied tissue.
IX.) Identification of Molecules That Interact With 191P4D12(b)000 The 191P4012(b) protein and nucleic acid sequences disclosed herein allow a skilled artisan to identify proteins,
01 small molecules and other agents that interact with 191P4D12(b), as well as pathways activated by 191P4D12(b) via any
one of a variety of art accepted protocols. For example, one can utilize one of the so-called interaction trap systems (also
referred to as the "two-hybrid assay"). In such systems, molecules interact and reconstitute a transcription factor which
directs expression of a reporter gene, whereupon the expression of the reporter gene is assayed. Other systems identify
L-i protein-protein interactions In vivo through reconstitution of a eukaryotic transcriptional activator, see, U.S. Patent Nos.
5,955,280 issued 21 September 1999, 5,925,523 issued 20 July 1999, 5,846,722 issued 8 December 1998 and 6,004,746
issued 21 December 1999. Algorithms are also available in the art for genome-based predictions of protein function (see,
Marcotte, et al., Nature 402: 4 November 1999, 83-86).
Cl Alternatively one can screen peptide libraries to identify molecules that interact with 191P4012(b) protein
L) sequences. In such methods, peptides that bind to 191P4D12(b) are identified by screening libraries that encode a random
S or controlled collection of amino acids. Peptides encoded by the libraries are expressed as fusion proteins of bacteriophage
0 coat proteins, the bacteriophage particles are then screened against the 191P4D12(b) protein(s).
Accordingly, peptides having a wide variety of uses, such as therapeutic, prognostic or diagnostic reagents, are
thus identified without any prior information on the structure of the expected ligand or receptor molecule. Typical peptide
libraries and screening methods that can be used to identify molecules that interact with 191P4D12(b) protein sequences are
disclosed for example in U.S. Patent Nos. 5,723,286 issued 3 March 1998 and 5,733,731 issued 31 March 1998.
Alternatively, cell lines that express 191 P4D12(b) are used to identify protein-protein interactions mediated by
191P4D12(b). Such interactions can be examined using immunoprecipitation techniques (see, Hamilton et al.
Biochem. Biophys. Res. Commun. 1999, 261:646-51). 191P4D12(b) protein can be immunoprecipitated from 191P4D12(b)-
expressing cell lines using anti-191P4D12(b) antibodies. Alternatively, antibodies against His-tag can be used in a cell line
engineered to express fusions of 191P4D12(b) and a His-tag (vectors mentioned above). The immunoprecipitated complex
can be examined for protein association by procedures such as Western blotting, 5S-methlonine labeling of proteins, protein
microsequencing, silver staining and two-dimensional gel electrophoresis.
Small molecules and ligands that interact with 191P4D12(b) can be identified through related embodiments of such
screening assays. For example, small molecules can be identified that interfere with protein function, including molecules
that interfere with 191P4D12(b)'s ability to mediate phosphorylation and de-phosphorylation, interaction with DNA or RNA
molecules as an indication of regulation of cell cycles, second messenger signaling or tumorigenesis. Similarly, small
molecules that modulate 191P4D12(b)-related ion channel, protein pump, or cell communication functions are identified and
used to treat patients that have a cancer that expresses 191P4D12(b) (see, Hille, Ionic Channels of Excitable
Membranes 2nd Ed., Sinauer Assoc., Sunderland, MA, 1992). Moreover, ligands that regulate 191P4D12(b) function can be
identified based on their ability to bind 191P4D12(b) and activate a reporter construct. Typical methods are discussed for
example in U.S. Patent No. 5,928,868 issued 27 July 1999, and include methods for forming hybrid ligands in which at least
one ligand is a small molecule. In an illustrative embodiment, cells engineered to express a fusion protein of 191P4D12(b)
and a DNA-binding protein are used to co-express a fusion protein of a hybrid ligand/small molecule and a cDNA library
transcriptional activator protein. The cells further contain a reporter gene, the expression of which is conditioned on the
proximity of the first and second fusion proteins to each other, an event that occurs only if the hybrid ligand binds to target
sites on both hybrid proteins. Those cells that express the reporter gene are selected and the unknown small molecule or
the unknown ligand is identified. This method provides a means of identifying modulators, which activate or inhibit
191P4D12(b).
An embodiment of this invention comprises a method of screening for a molecule that interacts with a 191P4D12(b)
amino acid sequence shown In Figure 2 or Figure 3, comprising the steps of contacting a population of molecules with a
0 0 191P4D12(b) amino acid sequence, allowing the population of molecules and the 191P4D12(b) amino acid sequence to
0 interact under conditions that facilitate an interaction, determining the presence of a molecule that interacts with the
191P4D12(b) amino acid sequence, and then separating molecules that do not interact with the 191P4D12(b) amino acid
sequence from molecules that do. In a specific embodiment, the method further comprises purifying, characterizing and
identifying a molecule that interacts with the 191P4D12(b) amino acid sequence. The identified molecule can be used to
modulate a function performed by 191P4D12(b). In a preferred embodiment, the 191P4D12(b) amino acid sequence is
contacted with a library of peptides.
X) Therapeutic Methods and Compositions
The identification of 191P4D12(b) as a protein that is normally expressed in a restricted set of tissues, but which is
also expressed in cancers such as those listed in Table I, opens a number of therapeutic approaches to the treatment of
00 such cancers.
SOf note, targeted antitumor therapies have been useful even when the targeted protein is expressed on normal
tissues, even vital normal organ tissues. A vital organ is one that is necessary to sustain life, such as the heart or colon. A
non-vital organ is one that can be removed whereupon the individual is still able to survive. Examples of non-vital organs are
ovary, breast, and prostate.
For example, Herceptin® is an FDA approved pharmaceutical that has as its active ingredient an antibody which is
immunoreactive with the protein variously known as HER2, HER2/neu, and erb-b-2. It is marketed by Genentech and has
been a commercially successful antitumor agent. Herceptin sales reached almost $400 million in 2002. Herceptin is a
treatment for HER2 positive metastatic breast cancer. However, the expression of HER2 is not limited to such tumors. The
same protein is expressed in a number of normal tissues. In particular, it is known that HER2/neu is present in normal
kidney and heart, thus these tissues are present in all human recipients of Herceptin. The presence of HER2/neu in normal
kidney is also confirmed by Latif, et al., B.J.U. International (2002) 89:5-9. As shown in this article (which evaluated
whether renal cell carcinoma should be a preferred indication for anti-HER2 antibodies such as Herceptin) both protein and
mRNA are produced in benign renal tissues. Notably, HER2/neu protein was strongly overexpressed in benign renal tissue.
Despite the fact that HER2/neu is expressed in such vital tissues as heart and kidney, Herceptin is a very useful, FDA
approved, and commercially successful drug. The effect of Herceptin on cardiac tissue, "cardiotoxicity," has merely been
a side effect to treatment. When patients were treated with Herceptin alone, significant cardiotoxicity occurred in a very low
percentage of patients.
Of particular note, although kidney tissue is indicated to exhibit normal expression, possibly even higher expression
than cardiac tissue, kidney has no appreciable Herceptin side effect whatsoever. Moreover, of the diverse array of normal
tissues in which HER2 is expressed, there is very little occurrence of any side effect. Only cardiac tissue has manifested any
appreciable side effect at all. A tissue such as kidney, where HER2/neu expression is especially notable, has not been the
basis for any side effect.
Furthermore, favorable therapeutic effects have been found for antitumor therapies that target epidermal growth
factor receptor (EGFR). EGFR is also expressed in numerous normal tissues. There have been very limited side effects in
normal tissues following use of anti-EGFR therapeutics.
Thus, expression of a target protein in normal tissue, even vital normal tissue, does not defeat the utility of a
targeting agent for the protein as a therapeutic for certain tumors in which the protein is also overexpressed.
Accordingly, therapeutic approaches that inhibit the activity of a 191P4D12(b) protein are useful for patients
suffering from a cancer that expresses 191P4D12(b). These therapeutic approaches generally fall into two classes. OneOO class comprises various methods for inhibiting the binding or association of a 191P4D12(b) protein with its binding partner or
with other proteins. Another class comprises a variety of methods for inhibiting the transcription of a 191P4D12(b) gene or
translation of 191P4D12(b) mRNA.
Anti-Cancer Vaccines
SThe invention provides cancer vaccines comprising a 191P4D12(b)-related protein or 191P4D12(b)-related nucleic acid.
In view of the expression of 191P4D12(b), cancer vaccines prevent and/or treat 191P4D12(b)-expressing cancers with minimal or
no effects on non-target tissues. The use of a tumor antigen in a vaccine that generates humoral and/or cell-mediated immune
responses as anti-cancer therapy is well known in the art and has been employed in prostate cancer using human PSMA and
C rodent PAP immunogens (Hodge et al., 1995, Int J. Cancer 63:231-237; Fong et al, 1997, J. Immunol. 159:3113-3117).
Such methods can be readily practiced by employing a 191 P4D12(b)-related protein, or a 191P4D12(b)-encoding0 0 nucleic acid molecule and recombinant vectors capable of expressing and presenting the 191P4D12(b) immunogen (which
0 typically comprises a number of antibody or T cell epitopes). Skilled artisans understand that a wide variety of vaccine
systems for delivery of immunoreactive epitopes are known in the art (see, Heryln et al., Ann Med 1999 Feb 31(1):66-
78; Maruyama et al., Cancer Immunol Immunother 2000 Jun 49(3):123-32) Briefly, such methods of generating an immune
response humoral and/or cell-mediated) in a mammal, comprise the steps of: exposing the mammal's immune system
to an immunoreactive epitope an epitope present in a 191P4D12(b) protein shown in Figure 3 or analog or homolog
thereof) so that the mammal generates an immune response that is specific for that epitope generates antibodies that
specifically recognize that epitope). In a preferred method, a 191P4D12(b) immunogen contains a biological motif, see e.g.,
Tables VIII-XXI and XXII-XLIX, or a peptide of a size range from 191P4D12(b) indicated in Figure 5, Figure 6, Figure 7,
Figure 8, and Figure 9.
The entire 191P4D12(b) protein, immunogenic regions or epitopes thereof can be combined and delivered by
various means. Such vaccine compositions can include, for example, lipopeptides (e.g.,Vitiello, A. et al., J. Clin. Invest.
95:341, 1995), peptide compositions encapsulated in poly(DL-lactide-co-glycolide) microspheres (see, Eldridge,
et al., Molec. Immunol. 28:287-294,1991: Alonso et al., Vaccine 12:299-306,1994; Jones et al., Vaccine 13:675-681, 1995),
peptide compositions contained in immune stimulating complexes (ISCOMS) (see, Takahashi et al., Nature 344:873-
875,1990; Hu et al., Clin Exp Immunol. 113:235-243, 1998), multiple antigen peptide systems (MAPs) (see Tam, J. P.,
Proc. Natl. Acad. Sci. U.S.A. 85:5409-5413,1988; Tam, J. Immunol. Methods 196:17-32, 1996), peptides formulated as
multivalent peptides; peptides for use in ballistic delivery systems, typically crystallized peptides, viral delivery vectors
(Perkus, M. E. et al., In: Concepts in vaccine development, Kaufmann, S. H. ed., p. 379, 1996; Chakrabarti, S. et al.,
Nature 320:535, 1986; Hu, S. L. et al., Nature 320:537,1986; Kieny, et al., AIDS Bio/Technology4:790, 1986; Top, F.
H. etal., J. Infect. Dis. 124:148, 1971; Chanda, P. K. et al., Virology 175:535, 1990), particles of viral or synthetic origin
Kofler, N. et al., J. Immunol. Methods. 192:25, 1996; Eldridge, J. et al., Sem. Hematol. 30:16, 1993; Falo, L. Jr. et al.,
Nature Med. 7:649,1995), adjuvants (Warren, H. Vogel, F. and Chedid, L. A. Annu. Rev. Immunol. 4:369,1986;
Gupta, R. K. et al., Vaccine 11:293,1993), liposomes (Reddy, R. et al., J. Immunol. 148:1585,1992; Rock, K. Immunol.
Today 17:131, 1996), or, naked or particle absorbed cDNA (Ulmer, J. B. et al., Science 259:1745, 1993; Robinson, H. L.,
Hunt, L. and Webster, R. Vaccine 11:957, 1993; Shiver, J. W. et al., In: Concepts in vaccine development, Kaufmann,
S. H. ed., p. 423,1996; Cease, K. and Berzofsky, J. Annu. Rev. Immunol. 12:923,1994 and Eldridge, J. H. etal.,
Sem. Hematol. 30:16, 1993). Toxin-targeted delivery technologies, also known as receptor mediated targeting, such as
those of Avant Immunotherapeutics, Inc. (Needham, Massachusetts) may also be used.
In patients with 191P4D12(b)-associated cancer, the vaccine compositions of the invention can also be used in
conjunction with other treatments used for cancer, surgery, chemotherapy, drug therapies, radiation therapies, etc.
00 including use in combination with immune adjuvants such as IL-2, IL-12, GM-CSF, and the like.
Cellular Vaccines:
K CTL epitopes can be determined using specific algorithms to identify peptides within 191P4D12(b) protein that bind
S corresponding HLA alleles (see Table IV; EpimerM and EpimatrixTM Brown University (URL brown.edulResearch/TB-
HIV.Lab/epimalrix/epimatrix.html); and, BIMAS, (URL bimas.dcrtnih.gov/; SYFPEITHI at URL syfpeithi.bmi-heidelberg.com/).
0 In a preferred embodiment, a 191P4D12(b) Immunogen contains one or more amino acid sequences identified using
techniques well known in the art, such as the sequences shown in Tables VIII-XXI and XXII-XLIX or a peptide of 8, 9, 10 or 11
amino acids specified by an HLA Class I motif/supermotif Table IV Table IV or Table IV and/or a peptide
S of at least 9 amino acids that comprises an HLA Class II motif/supermotif Table IV or Table IV As is
appreciated in the art, the HLA Class I binding groove is essentially closed ended so that peptides of only a particular size
S range can fit into the groove and be bound, generally HLA Class I epitopes are 8, 9, 10, or 11 amino acids long. In contrast,
00 the HLA Class II binding groove is essentially open ended; therefore a peptide of about 9 or more amino acids can be bound
0 by an HLA Class II molecule. Due to the binding groove differences between HLA Class I and II, HLA Class I motifs are
C1 length specific, position two of a Class I motif is the second amino acid in an amino to carboxyl direction of the peptide;
The amino acid positions in a Class II motif are relative only to each other, not the overall peptide, additional amino acids
can be attached to the amino and/or carboxyl termini of a motif-bearing sequence. HLA Class II epitopes are often 9, 10, 11,
12, 13, 14, 15, 16,17, 18, 19, 20, 21, 22, 23, 24, or 25 amino acids long, or longer than 25 amino acids.
Antibody-based Vaccines
A wide variety of methods for generating an immune response in a mammal are known in the art (for example as
the first step in the generation of hybridomas). Methods of generating an immune response in a mammal comprise exposing
the mammal's immune system to an immunogenic epitope on a protein a 191P4D12(b) protein) so that an immune
response is generated. A typical embodiment consists of a method for generating an immune response to 191P4D12(b) in a
host, by contacting the host with a sufficient amount of at least one 191P4D12(b) B cell or cytotoxic T-cell epitope or analog
thereof; and at least one periodic interval thereafter re-contacting the host with the 191P4D12(b) B cell or cytotoxic T-cell
epitope or analog thereof. A specific embodiment consists of a method of generating an immune response against a
191P4D12(b)-related protein or a man-made multiepitopic peptide comprising: administering 191P4D12(b) immunogen (e.g.
a 191P4D12(b) protein or a peptide fragment thereof, a 191P4D12(b) fusion protein or analog etc.) in a vaccine preparation
to a human or another mammal. Typically, such vaccine preparations further contain a suitable adjuvant (see, U.S.
Patent No. 6,146,635) or a universal helper epitope such as a PADRE M peptide (Epimmune Inc., San Diego, CA; see, e.g.,
Alexander et al., J. Immunol. 2000 164(3); 164(3): 1625-1633; Alexander et al., Immunity 1994 751-761 and Alexander
et al., Immunol. Res. 1998 18(2): 79-92). An alternative method comprises generating an immune response in an individual
against a 191P4D12(b) immunogen by: administering in vivo to muscle or skin of the individual's body a DNA molecule that
comprises a DNA sequence that encodes a 191P4D12(b) immunogen, the DNA sequence operatively linked to regulatory
sequences which control the expression of the DNA sequence; wherein the DNA molecule is taken up by cells, the DNA
sequence is expressed in the cells and an immune response is generated against the immunogen (see, U.S. Patent No.
5,962,428). Optionally a genetic vaccine facilitator such as anionic lipids; saponins; lectins; estrogenic compounds;
hydroxylated lower alkyls; dimethyl sulfoxide; and urea is also administered. In addition, an antiidiotypic antibody can be
administered that mimics 191P4D12(b), in order to generate a response to the target antigen.
Nucleic Acid Vaccines:
Vaccine compositions of the invention include nucleic acid-mediated modalities. DNA or RNA that encode
protein(s) of the invention can be administered to a patient. Genetic immunization methods can be employed to generateOO0 prophylactic or therapeutic humoral and cellular immune responses directed against cancer cells expressing 191P4D12(b).
S Constructs comprising DNA encoding a 191P4D12(b)-related proteinlimmunogen and appropriate regulatory sequences can
be injected directly into muscle or skin of an individual, such that the cells of the muscle or skin take-up the construct and
express the encoded 191P4D12(b) protein/immunogen. Alternatively, a vaccine comprises a 191P4D12(b)-related protein.
Expression of the 191P4D12(b)-related protein immunogen results in the generation of prophylactic or therapeutic humoral
LC and cellular immunity against cells that bear a 191P4D12(b) protein. Various prophylactic and therapeutic genetic
immunization techniques known in the art can be used (for review, see information and references published at Internet
address genweb.com). Nucleic acid-based delivery is described, for instance, in Wolff et. al., Science 247:1465 (1990) as
well as U.S. Patent Nos. 5,580,859; 5,589,466; 5,804,566; 5,739,118; 5,736,524; 5,679,647; WO 98/04720. Examples of
C-l DNA-based delivery technologies include "naked DNA", facilitated (bupivicaine, polymers, peptide-mediated) delivery,
cationic lipid complexes, and particle-mediated ("gene gun") or pressure-mediated delivery (see, U.S. Patent No.
S 5,922,687).
SFor therapeutic or prophylactic immunization purposes, proteins of the invention can be expressed via viral or
bacterial vectors. Various viral gene delivery systems that can be used in the practice of the invention include, but are not limited
to, vaccinia, fowlpox, canarypox, adenovirus, Influenza, poliovirus, adeno-associated virus, lentivirus, and sindbis virus (see, e.g.,
Restifo, 1996, Curr. Opin. Immunol. 8:658-663; Tsang etal. J. Natl. Cancer Inst. 87:982-990 (1995)). Non-viral delivery systems
can also be employed by introducing naked DNA encoding a 191P4D12(b)-related protein into the patient intramuscularly or
intradermally) to induce an anti-tumor response.
Vaccinia virus is used, for example, as a vector to express nucleotide sequences that encode the peptides of the
invention. Upon introduction into a host, the recombinant vaccinia virus expresses the protein immunogenic peptide, and
thereby elicits a host immune response. Vaccinia vectors and methods useful in immunization protocols are described in,
U.S. Patent No. 4,722,848. Another vector is BCG (Bacille Calmette Guerin). BCG vectors are described in Stover et
al., Nature 351:456-460 (1991). A wide variety of other vectors useful for therapeutic administration or immunization of the
peptides of the invention, e.g. adeno and adeno-associated virus vectors, retroviral vectors, Salmonella typhi vectors,
detoxified anthrax toxin vectors, and the like, will be apparent to those skilled in the art from the description herein.
Thus, gene delivery systems are used to deliver a 191P4D12(b)-related nucleic acid molecule. In one embodiment, the
full-length human 191P4D12(b) cDNA is employed. In another embodiment 191P4D12(b) nucleic acid molecules encoding
specific cytotoxic T lymphocyte (CTL) andlor antibody epitopes are employed.
Ex Vivo Vaccines
Various ex vivo strategies can also be employed to generate an immune response. One approach involves the use of
antigen presenting cells (APCs) such as dendritic cells (DC) to present 191P4D12(b) antigen to a patient's immune system.
Dendritic cells express MHC class I and II molecules, B7 co-stimulator, and IL-12, and are thus highly specialized antigen
presenting cells. In prostate cancer, autologous dendritic cells pulsed with peptides of the prostate-specific membrane
antigen (PSMA) are being used in a Phase I clinical trial to stimulate prostate cancer patients' immune systems (Tjoa et al.,
1996, Prostate 28:65-69; Murphy et al., 1996, Prostate 29:371-380). Thus, dendritic cells can be used to present
191P4D12(b) peptides to T cells in the context of MHC class I or II molecules. In one embodiment, autologous dendritic cells
are pulsed with 191P4D12(b) peptides capable of binding to MHC class I and/or class II molecules. In another embodiment,
dendritic cells are pulsed with the complete 191P4D12(b) protein. Yet another embodiment involves engineering the
overexpression of a 191P4D12(b) gene in dendritic cells using various implementing vectors known in the art, such as
adenovirus (Arthur et al., 1997, Cancer Gene Ther. 4:17-25), retrovirus (Henderson et al., 1996, Cancer Res. 56:3763-3770),
lentivlrus, adeno-associated virus, DNA transfection (Ribas et 1997, Cancer Res. 57:2865-2869), or tumor-derived RNA
transfection (Ashley et al., 1997, J. Exp. Med. 186:1177-1182). Cells that express 191P4D12(b) can also be engineered to
0 express immune modulators, such as GM-CSF, and used as immunizing agents.O
C 191P4D12(b) as a Target for Antibody-based Therapy
191P4D12(b) is an attractive target for antibody-based therapeutic strategies. A number of antibody strategies are
known in the art for targeting both extracellular and intracellular molecules (see, complement and ADCC mediated
killing as well as the use of intrabodies). Because 191 P4D12(b) is expressed by cancer cells of various lineages relative to
C1 corresponding normal cells, systemic administration of 191P4D12(b)-immunoreactive compositions are prepared that exhibit
excellent sensitivity without toxic, non-specific and/or non-target effects caused by binding of the immunoreactive
composition to non-target organs and tissues. Antibodies specifically reactive with domains of 191P4D12(b) are useful to
C=K treat 191P4D12(b)-expressing cancers systemically, either as conjugates with a toxin or therapeutic agent, or as naked
antibodies capable of inhibiting cell proliferation or function.
ri 191P4D12(b) antibodies can be introduced into a patient such that the antibody binds to 191P4D12(b) and00
modulates a function, such as an interaction with a binding partner, and consequently mediates destruction of the tumor cells
S and/or inhibits the growth of the tumor cells. Mechanisms by which such antibodies exert a therapeutic effect can include
complement-mediated cytolysis, antibody-dependent cellular cytotoxicity, modulation of the physiological function of
191P4D12(b), inhibition of ligand binding or signal transduction pathways, modulation of tumor cell differentiation, alteration
of tumor angiogenesis factor profiles, and/or apoptosis.
Those skilled in the art understand that antibodies can be used to specifically target and bind immunogenic
molecules such as an immunogenic region of a 191P4D12(b) sequence shown in Figure 2 or Figure 3. In addition, skilled
artisans understand that it is routine to conjugate antibodies to cytotoxic agents (see, Slevers et al. Blood 93:11 3678-
3684 (June 1, 1999)). When cytotoxic and/or therapeutic agents are delivered directly to cells, such as by conjugating them
to antibodies specific for a molecule expressed by that cell 191P4D12(b)), the cytotoxic agent will exert its known
biological effect cytotoxicity) on those cells.
A wide variety of compositions and methods for using antibody-cytotoxic agent conjugates to kill cells are known in
the art In the context of cancers, typical methods entail administering to an animal having a tumor a biologically effective
amount of a conjugate comprising a selected cytotoxic and/or therapeutic agent linked to a targeting agent an anti-
191P4D12(b) antibody) that binds to a marker 191P4D12(b)) expressed, accessible to binding or localized on the cell
surfaces. A typical embodiment is a method of delivering a cytotoxic and/or therapeutic agent to a cell expressing
191P4D12(b), comprising conjugating the cytotoxic agent to an antibody that immunospecifically binds to a 191P4D12(b)
epitope, and, exposing the cell to the antibody-agent conjugate. Another illustrative embodiment is a method of treating an
individual suspected of suffering from metastasized cancer, comprising a step of administering parenterally to said individual
a pharmaceutical composition comprising a therapeutically effective amount of an antibody conjugated to a cytotoxic and/or
therapeutic agent
Cancer immunotherapy using anti-191P4D12(b) antibodies can be done in accordance with various approaches
that have been successfully employed in the treatment of other types of cancer, including but not limited to colon cancer
(Arlen et al., 1998, Crit. Rev. Immunol. 18:133-138), multiple myeloma (Ozaki et al., 1997, Blood 90:3179-3186, Tsunenari et
al., 1997, Blood 90:2437-2444), gastric cancer (Kasprzyk et 1992, Cancer Res. 52:2771-2776), B-cell lymphoma
(Funakoshi et al., 1996, J. Immunother. Emphasis Tumor Immunol. 19:93-101), leukemia (Zhong et 1996, Leuk. Res.
20:581-589), colorectal cancer (Moun etal., 1994, Cancer Res. 54:6160-6166; Velders et 1995, Cancer Res. 55:4398-
4403), and breast cancer (Shepard et 1991, J. Clin. Immunol. 11:117-127). Some therapeutic approaches involve
conjugation of naked antibody to a toxin or radioisotope, such as the conjugation of Y91 or I131 to anti-CD20 antibodies
00 ZevalinTM, IDEC Pharmaceuticals Corp. or BexxarM, Coulter Pharmaceuticals), while others involve co-administration of
0 antibodies and other therapeutic agents, such as HerceptinTM (trastuzumab) with paclitaxel (Genentech, Inc.). The
C<1 antibodies can be conjugated to a therapeutic agent. To treat prostate cancer, for example, 191P4D12(b) antibodies can be
S administered in conjunction with radiation, chemotherapy or hormone ablation. Also, antibodies can be conjugated to a toxin
S such as calicheamicin Mylotarg T Wyeth-Ayerst, Madison, NJ, a recombinant humanized IgG4 kappa antibody
conjugated to antitumor antibiotic calicheamicin) or a maytansinoid taxane-based Tumor-Activated Prodrug, TAP,
Cl platform, ImmunoGen, Cambridge, MA, also see US Patent 5,416,064).
Although 191P4D12(b) antibody therapy is useful for all stages of cancer, antibody therapy can be particularly
S appropriate in advanced or metastatic cancers. Treatment with the antibody therapy of the invention is indicated for patients
S who have received one or more rounds of chemotherapy. Alternatively, antibody therapy of the invention is combined with a
ri chemotherapeutic or radiation regimen for patients who have not received chemotherapeutic treatment. Additionally,
Cl antibody therapy can enable the use of reduced dosages of concomitant chemotherapy, particularly for patients who do not00
tolerate the toxicity of the chemotherapeutic agent very well. Fan et al. (Cancer Res. 53:4637-4642, 1993), Prewett et al.
(International J. of Onco. 9:217-224, 1996), and Hancock et al. (Cancer Res. 51:4575-4580, 1991) describe the use of
various antibodies together with chemotherapeutic agents.
Although 191P4D12(b) antibody therapy is useful for all stages of cancer, antibody therapy can be particularly
appropriate in advanced or metastatic cancers. Treatment with the antibody therapy of the invention is Indicated for patients
who have received one or more rounds of chemotherapy. Alternatively, antibody therapy of the invention is combined with a
chemotherapeutic or radiation regimen for patients who have not received chemotherapeutic treatment. Additionally,
antibody therapy can enable the use of reduced dosages of concomitant chemotherapy, particularly for patients who do not
tolerate the toxicity of the chemotherapeutic agent very well.
Cancer patients can be evaluated for the presence and level of 191P4D12(b) expression, preferably using
immunohistochemical assessments of tumor tissue, quantitative 191P4D12(b) imaging, or other techniques that reliably
indicate the presence and degree of 191P4D12(b) expression. Immunohistochemical analysis of tumor biopsies or surgical
specimens is preferred for this purpose. Methods for immunohistochemical analysis of tumor tissues are well known in the
art.
Anti-191P4D12(b) monoclonal antibodies that treat prostate and other cancers include those that initiate a potent
immune response against the tumor or those that are directly cytotoxic. In this regard, anti-191P4D12(b) monoclonal
antibodies (mAbs) can elicit tumor cell lysis by either complement-mediated or antibody-dependent cell cytotoxicity (ADCC)
mechanisms, both of which require an intact Fc portion of the Immunoglobulin molecule for interaction with effector cell Fc
receptor sites on complement proteins. In addition, anti-191P4D12(b) mAbs that exert a direct biological effect on tumor
growth are useful to treat cancers that express 191P4D12(b). Mechanisms by which directly cytotoxic mAbs act Include:
inhibition of cell growth, modulation of cellular differentiation, modulation of tumor angiogenesis factor profiles, and the
induction of apoptosis. The mechanism(s) by which a particular anti-191P4D12(b) mAb exerts an anti-tumor effect is
evaluated using any number of in vitro assays that evaluate cell death such as ADCC, ADMMC, complement-mediated cell
lysis, and so forth, as is generally known in the art.
In some patients, the use of murine or other non-human monoclonal antibodies, or human/mouse chimeric mAbs
can induce moderate to strong immune responses against the non-human antibody. This can result in clearance of the
antibody from circulation and reduced efficacy. In the most severe cases, such an immune response can lead to the
extensive formation of immune complexes which, potentially, can cause renal failure. Accordingly, preferred monoclonal
antibodies used in the therapeutic methods of the invention are those that are either fully human or humanized and that bind
specifically to the target 191P4D12(b) antigen with high affinity but exhibit low or no antigenicity in the patient.
00 Therapeutic methods of the invention contemplate the administration of single anti-191P4D12(b) mAbs as well as
0 combinations, or cocktails, of different mAbs. Such mAb cocktails can have certain advantages inasmuch as they contain
SmAbs that target different epitopes, exploit different effector mechanisms or combine directly cytotoxic mAbs with mAbs that
c rely on immune effector functionality. Such mAbs in combination can exhibit synergistic therapeutic effects. In addition, anti-
191P4D12(b) mAbs can be administered concomitantly with other therapeutic modalities, including but not limited to various
O chemotherapeutic agents, androgen-blockers, immune modulators IL-2, GM-CSF), surgery or radiation. The anti-
191P4D12(b) mAbs are administered in their "naked" or unconjugated form, or can have a therapeutic agent(s) conjugated to
them.
Anti-191P4D12(b) antibody formulations are administered via any route capable of delivering the antibodies to a
tumor cell. Routes of administration include, but are not limited to, intravenous, intraperitoneal, intramuscular, intratumor,
0 intradermal, and the like. Treatment generally involves repeated administration of the anti-191P4D12(b) antibody
OO preparation, via an acceptable route of administration such as intravenous injection typically at a dose in the range of
O about 0.1, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 mg/kg body weight. In general, doses in the
C1 range of 10-1000 mg mAb per week are effective and well tolerated.
Based on clinical experience with the HerceptinTM mAb in the treatment of metastatic breast cancer, an initial
loading dose of approximately 4 mg/kg patient body weight IV, followed by weekly doses of about 2 mg/kg IV of the anti-
191P4012(b) mAb preparation represents an acceptable dosing regimen. Preferably, the initial loading dose is administered
as a 90-minute or longer infusion. The periodic maintenance dose is administered as a 30 minute or longer infusion,
provided the initial dose was well tolerated. As appreciated by those of skill in the art, various factors can influence the ideal
dose regimen in a particular case. Such factors include, for example, the binding affinity and half life of the Ab or mAbs
used, the degree of 191P4D12(b) expression in the patient, the extent of circulating shed 191P4D12(b) antigen, the desired
steady-state antibody concentration level, frequency of treatment, and the influence of chemotherapeutic or other agents
used in combination with the treatment method of the invention, as well as the health status of a particular patient.
Optionally, patients should be evaluated for the levels of 191P4012(b) in a given sample the levels of
circulating 191P4D12(b) antigen and/or 191P4D12(b) expressing cells) in order to assist in the determination of the most
effective dosing regimen, etc. Such evaluations are also used for monitoring purposes throughout therapy, and are useful to
gauge therapeutic success in combination with the evaluation of other parameters (for example, urine cytology and/or
ImmunoCyt levels in bladder cancer therapy, or by analogy, serum PSA levels in prostate cancer therapy).
Anti-idiotypic anti-191P4D12(b) antibodies can also be used in anti-cancer therapy as a vaccine for inducing an
immune response to cells expressing a 191P4D12(b)-related protein. In particular, the generation of anti-idiotypic antibodies
is well known in the art; this methodology can readily be adapted to generate anti-idiotypic anti-191P4D12(b) antibodies that
mimic an epitope on a 191P4D12(b)-related protein (see, for example, Wagner et al., 1997, Hybridoma 16: 33-40; Foon et
al., 1995, J. Clin. Invest. 96:334-342; Herlyn et al., 1996, Cancer Immunol. Immunother. 43:65-76). Such an anti-idiotypic
antibody can be used in cancer vaccine strategies.
191P4D12(b) as a Target for Cellular Immune Responses
Vaccines and methods of preparing vaccines that contain an immunogenically effective amount of one or more
HLA-binding peptides as described herein are further embodiments of the invention. Furthermore, vaccines in accordance
with the invention encompass compositions of one or more of the claimed peptides. A peptide can be present in a vaccine
individually. Alternatively, the peptide can exist as a homopolymer comprising multiple copies of the same peptide, or as a
heteropolymer of various peptides. Polymers have the advantage of increased immunological reaction and, where different
peptide epitopes are used to make up the polymer, the additional ability to induce antibodies and/or CTLs that react withOO0 different antigenic determinants of the pathogenic organism or tumor-related peptide targeted for an immune response. The
composition can be a naturally occurring region of an antigen or can be prepared, recombinantly or by chemical
S synthesis.
Carriers that can be used with vaccines of the invention are well known in the art, and include, thyroglobulin,
albumins such as human serum albumin, tetanus toxoid, polyamino acids such as poly L-lyslne, poly L-glutamic acid,
(C influenza, hepatitis B virus core protein, and the like. The vaccines can contain a physiologically tolerable acceptable)
diluent such as water, or saline, preferably phosphate buffered saline. The vaccines also typically include an adjuvant.
Adjuvants such as incomplete Freund's adjuvant, aluminum phosphate, aluminum hydroxide, or alum are examples of
materials well known In the art. Additionally, as disclosed herein, CTL responses can be primed by conjugating peptides of
CK the invention to lipids, such as tripalmitoyl-S-glycerylcysteinlyseryl- serine (P3CSS). Moreover, an adjuvant such as a
Ni synthetic cytosine-phosphorothiolated-guanine-containing (CpG) oligonucleotides has been found to increase CTL00 responses 10- to 100-fold. (see, e.g. Davila and Cells, J. Immunol. 165:539-547 (2000))
SUpon immunization with a peptide composition in accordance with the invention, via injection, aerosol, oral,
transdermal, transmucosal, intrapleural, intrathecal, or other suitable routes, the immune system of the host responds to the
vaccine by producing large amounts of CTLs and/or HTLs specific for the desired antigen. Consequently, the host becomes
at least partially immune to later development of cells that express or overexpress 191 P4D12(b) antigen, or derives at least
some therapeutic benefit when the antigen was tumor-associated.
In some embodiments, it may be desirable to combine the class I peptide components with components that
induce or facilitate neutralizing antibody and or helper T cell responses directed to the target antigen. A preferred
embodiment of such a composition comprises class I and class II epitopes in accordance with the invention. An alternative
embodiment of such a composition comprises a class I and/or class II epitope in accordance with the invention, along with a
cross reactive HTL epitope such as PADRET (Epimmune, San Diego, CA) molecule (described in U.S. Patent Number
5,736,142).
A vaccine of the invention can also include antigen-presenting cells (APC), such as dendritic cells as a
vehicle to present peptides of the invention. Vaccine compositions can be created in vitro, following dendritic cell
mobilization and harvesting, whereby loading of dendritic cells occurs in vitro. For example, dendritic cells are transfected,
with a minigene in accordance with the invention, or are pulsed with peptides. The dendritic cell can then be
administered to a patient to elicit immune responses in vivo. Vaccine compositions, either DNA- or peptide-based, can also
be administered in vivo in combination with dendritic cell mobilization whereby loading of dendritic cells occurs in vivo.
Preferably, the following principles are utilized when selecting an array of epitopes for inclusion in a polyepitopic
composition for use in a vaccine, or for selecting discrete epitopes to be included in a vaccine and/or to be encoded by
nucleic acids such as a minigene. It is preferred that each of the following principles be balanced in order to make the
selection. The multiple epitopes to be incorporated in a given vaccine composition may be, but need not be, contiguous in
sequence in the native antigen from which the epitopes are derived.
Epitopes are selected which, upon administration, mimic immune responses that have been observed to
be correlated with tumor clearance. For HLA Class I this includes 3-4 epitopes that come from at least one tumor associated
antigen (TAA). For HLA Class II a similar rationale is employed; again 3-4 epitopes are selected from at least one TAA (see,
Rosenberg et aL, Science 278:1447-1450). Epitopes from one TAA may be used in combination with epitopes from one
or more additional TAAs to produce a vaccine that targets tumors with varying expression patterns of frequently-expressed
TAAs.
Epitopes are selected that have the requisite binding affinity established to be correlated with
immunogenicity: for HLA Class I an ICso of 500 nM or less, often 200 nM or less; and for Class II an ICso of 1000 nM or less.
00 Sufficient supermotif bearing-peptides, or a sufficient array of allele-specific motif-bearing peptides, are
S selected to give broad population coverage. For example, it is preferable to have at least 80% population coverage. A
CN Monte Carlo analysis, a statistical evaluation known in the art, can be employed to assess the breadth, or redundancy of,
population coverage.
When selecting epitopes from cancer-related antigens it is often useful to select analogs because the
patient may have developed tolerance to the native epitope.
C Of particular relevance are epitopes referred to as "nested epitopes." Nested epitopes occur where at
least two epitopes overlap in a given peptide sequence. A nested peptide sequence can comprise B cell, HLA class I and/or
S HLA class II epitopes. When providing nested epitopes, a general objective is to provide the greatest number of epitopes per
C sequence. Thus, an aspect is to avoid providing a peptide that is any longer than the amino terminus of the amino terminal
Q epitope and the carboxyl terminus of the carboxyl terminal epitope in the peptide. When providing a multi-epitopic sequence,
C such as a sequence comprising nested epitopes, it is generally important to screen the sequence in order to insure that it000 does not have pathological or other deleterious biological properties.
S6.) If a polyepitopic protein is created, or when creating a minigene, an objective is to generate the smallest
peptide that encompasses the epitopes of interest. This principle is similar, if not the same as that employed when selecting
a peptide comprising nested epitopes. However, with an artificial polyepitopic peptide, the size minimization objective is
balanced against the need to integrate any spacer sequences between epitopes in the polyepitopic protein. Spacer amino
acid residues can, for example, be introduced to avoid junctional epitopes (an epitope recognized by the immune system, not
present in the target antigen, and only created by the man-made juxtaposition of epitopes), or to facilitate cleavage between
epitopes and thereby enhance epitope presentation. Junctional epitopes are generally to be avoided because the recipient
may generate an immune response to that non-native epitope. Of particular concern is a junctional epitope that is a
"dominant epitope." A dominant epitope may lead to such a zealous response that immune responses to other epitopes are
diminished or suppressed.
Where the sequences of multiple variants of the same target protein are present, potential peptide
epitopes can also be selected on the basis of their conservancy. For example, a criterion for conservancy may define that
the entire sequence of an HLA class I binding peptide or the entire 9-mer core of a class II binding peptide be conserved in a
designated percentage of the sequences evaluated for a specific protein antigen.
Minigene Vaccines
A number of different approaches are available which allow simultaneous delivery of multiple epitopes. Nucleic
acids encoding the peptides of the invention are a particularly useful embodiment of the invention. Epitopes for inclusion in a
minigene are preferably selected according to the guidelines set forth in the previous section. A preferred means of
administering nucleic acids encoding the peptides of the invention uses minigene constructs encoding a peptide comprising
one or multiple epitopes of the invention.
The use of multi-epitope minigenes is described below and in, Ishioka et al., J. Immunol. 162:3915-3925, 1999; An,
L. and Whitton, J. J. Virol. 71:2292, 1997; Thomson, S. A. et al., J. Immunol. 157:822, 1996; Whitton, J. L. et al., J. Virol.
67:348, 1993; Hanke, R. et al., Vaccine 16:426, 1998. For example, a multi-epitope DNA plasmid encoding supermotif-
and/or motif-bearing epitopes derived 191P4D12(b), the PADRE® universal helper T cell epitope or multiple HTL epitopes
from 191P4D12(b) (see Tables VIII-XXI and XXII to XLIX), and an endoplasmic reticulum-translocating signal sequence
can be engineered. A vaccine may also comprise epitopes that are derived from other TAAs.
The immunogenicity of a multi-epitopic minigene can be confirmed in transgenic mice to evaluate the magnitude of
0 CTL induction responses against the epitopes tested. Further, the immunogenicity of DNA-encoded epitopes in vivo can be
0 correlated with the in vitro responses of specific CTL lines against target cells transfected with the DNA plasmid. Thus, these
C-l experiments can show that the minigene serves to both: generate a CTL response and that the induced CTLs
S recognized cells expressing the encoded epitopes.
For example, to create a DNA sequence encoding the selected epitopes (minigene) for expression In human cells,
the amino acid sequences of the epitopes may be reverse translated. A human codon usage table can be used to guide the
CKl codon choice for each amino acid. These epitope-encoding DNA sequences may be directly adjoined, so that when
translated, a continuous polypeptide sequence is created. To optimize expression andlor immunogenicity, additional
S elements can be incorporated into the minigene design. Examples of amino acid sequences that can be reverse translated
S and included in the minigene sequence include: HLA class I epitopes, HLA class II epitopes, antibody epitopes, a
S ubiquitination signal sequence, and/or an endoplasmic reticulum targeting signal. In addition, HLA presentation of CTL and
CKl HTL epitopes may be improved by including synthetic poly-alanine) or naturally-occurring flanking sequences adjacent000 to the CTL or HTL epitopes; these larger peptides comprising the epitope(s) are within the scope of the invention.
The minigene sequence may be converted to DNA by assembling oligonucleotides that encode the plus and minus
strands of the minigene. Overlapping oligonucleotides (30-100 bases long) may be synthesized, phosphorylated, purified
and annealed under appropriate conditions using well known techniques. The ends of the oligonucleotides can be joined, for
example, using T4 DNA ligase. This synthetic minigene, encoding the epitope polypeptide, can then be cloned into a desired
expression vector.
Standard regulatory sequences well known to those of skill in the art are preferably included in the vector to ensure
expression in the target cells. Several vector elements are desirable: a promoter with a down-stream cloning site for
minigene insertion; a polyadenylation signal for efficient transcription termination; an E. coil origin of replication; and an E.
coil selectable marker ampicillin or kanamycin resistance). Numerous promoters can be used for this purpose, the
human cytomegalovirus (hCMV) promoter. See, U.S. Patent Nos. 5,580,859 and 5,589,466 for other suitable promoter
sequences.
Additional vector modifications may be desired to optimize minigene expression and immunogenicity. In some
cases, introns are required for efficient gene expression, and one or more synthetic or naturally-occurring Introns could be
incorporated into the transcribed region of the minigene. The inclusion of mRNA stabilization sequences and sequences for
replication in mammalian cells may also be considered for increasing minigene expression.
Once an expression vector is selected, the minigene is cloned into the polylinker region downstream of the
promoter. This plasmid is transformed into an appropriate E. coli strain, and DNA is prepared using standard techniques.
The orientation and DNA sequence of the minigene, as well as all other elements included in the vector, are confirmed using
restriction mapping and DNA sequence analysis. Bacterial cells harboring the correct plasmid can be stored as a master cell
bank and a working cell bank.
In addition, immunostimulatory sequences (ISSs or CpGs) appear to play a role in the immunogenicity of DNA
vaccines. These sequences may be included in the vector, outside the minigene coding sequence, if desired to enhance
immunogenicity.
In some embodiments, a bi-cistronic expression vector which allows production of both the minigene-encoded
epitopes and a second protein (included to enhance or decrease immunogenicity) can be used. Examples of proteins or
polypeptides that could beneficially enhance the immune response if co-expressed include cytokines IL-2, IL-12, GM-
CSF), cytokine-inducing molecules LelF), costimulatory molecules, or for HTL responses, pan-DR binding proteins
(PADRETM, Epimmune, San Diego, CA). Helper (HTL) epitopes can be joined to intracellular targeting signals and
expressed separately from expressed CTL epitopes; this allows direction of the HTL epitopes to a cell compartment different
than that of the CTL epitopes. If required, this could facilitate more efficient entry of HTL epitopes into the HLA class II
00 pathway, thereby improving HTL induction. In contrast to HTL or CTL induction, specifically decreasing the immuneO
S response by co-expression of immunosuppressive molecules TGF-P) may be beneficial in certain diseases.
Therapeutic quantities of plasmid DNA can be produced for example, by fermentation in E, coli, followed by
ct purification. Aliquots from the working cell bank are used to inoculate growth medium, and grown to saturation in shaker
flasks or a bioreactor according to well-known techniques. Plasmid DNA can be purified using standard bioseparation
0 technologies such as solid phase anion-exchange resins supplied by QIAGEN, Inc. (Valencia, California). If required,
supercoiled DNA can be isolated from the open circular and linear forms using gel electrophoresis or other methods.
Purified plasmid DNA can be prepared for injection using a variety of formulations. The simplest of these is
reconstitution of lyophilized DNA in sterile phosphate-buffer saline (PBS). This approach, known as "naked DNA," is
currently being used for intramuscular (IM) administration in clinical trials. To maximize the immunotherapeutic effects of
S minigene DNA vaccines, an alternative method for formulating purified plasmid DNA may be desirable. A variety of methods
00 have been described, and new techniques may become available. Cationic lipids, glycolipids, and fusogenic liposomes can
O also be used in the formulation (see, as described by WO 93/24640; Mannino Gould-Fogerite, BioTechniques 6(7):
C1 682 (1988); U.S. Pat No. 5,279,833; WO 91/06309; and Feigner, et al., Proc. Nat'l Acad. Scl. USA 84:7413 (1987). In
addition, peptides and compounds referred to collectively as protective, interactive, non-condensing compounds (PINC)
could also be complexed to purified plasmid DNA to influence variables such as stability, intramuscular dispersion, or
trafficking to specific organs or cell types.
Target cell sensitization can be used as a functional assay for expression and HLA class I presentation of
minigene-encoded CTL epitopes. For example, the plasmid DNA is introduced into a mammalian cell line that is suitable as
a target for standard CTL chromium release assays. The transfection method used will be dependent on the final
formulation. Electroporation can be used for "naked" DNA, whereas cationic lipids allow direct in vitro transfection. A
plasmid expressing green fluorescent protein (GFP) can be co-transfected to allow enrichment of transfected cells using
fluorescence activated cell sorting (FACS). These cells are then chromium-51 5sCr) labeled and used as target cells for
epitope-specific CTL lines; cytolysis, detected by 5sCr release, indicates both production of, and HLA presentation of,
mlnigene-encoded CTL epitopes. Expression of HTL epitopes may be evaluated in an analogous manner using assays to
assess HTL activity.
In vivo immunogenicity is a second approach for functional testing of minigene DNA formulations. Transgenic mice
expressing appropriate human HLA proteins are immunized with the DNA product. The dose and route of administration are
formulation dependent IM for DNA in PBS, intraperitoneal for lipid-complexed DNA). Twenty-one days after
immunization, splenocytes are harvested and restimulated for one week in the presence of peptides encoding each epitope
being tested. Thereafter, for CTL effector cells, assays are conducted for cytolysis of peptide-loaded, 5'Cr-labeled target
cells using standard techniques. Lysis of target cells that were sensitized by HLA loaded with peptide epitopes,
corresponding to minigene-encoded epitopes, demonstrates DNA vaccine function for in vivo induction of CTLs.
Immunogenicity of HTL epitopes is confirmed in transgenic mice in an analogous manner.
Alternatively, the nucleic acids can be administered using ballistic delivery as described, for instance, in U.S.
Patent No. 5,204,253. Using this technique, particles comprised solely of DNA are administered. In a further alternative
embodiment, DNA can be adhered to particles, such as gold particles.
Minigenes can also be delivered using other bacterial or viral delivery systems well known in the art, an
expression construct encoding epitopes of the invention can be incorporated into a viral vector such as vaccinia.
X.C.2. Combinations of CTL Peptides with Helper Peptides
I
Vaccine compositions comprising CTL peptides of the invention can be modified, analoged, to provide desired
attributes, such as improved serum half life, broadened population coverage or enhanced immunogenicity.00
O For instance, the ability of a peptide to induce CTL activity can be enhanced by linking the peptide to a sequence
which contains at least one epitope that is capable of inducing a T helper cell response. Although a CTL peptide can be
directly linked to a T helper peptide, often CTL epitope/HTL epitope conjugates are linked by a spacer molecule. The spacer
is typically comprised of relatively small, neutral molecules, such as amino acids or amino acid mimetics, which are
substantially uncharged under physiological conditions. The spacers are typically selected from, Ala, Gly, or other
S neutral spacers of nonpolar amino acids or neutral polar amino acids. It will be understood that the optionally present spacer
need not be comprised of the same residues and thus may be a hetero- or homo-oligomer. When present, the spacer will
S usually be at least one or two residues, more usually three to six residues and sometimes 10 or more residues. The CTL
peptide epitope can be linked to the T helper peptide epitope either directly or via a spacer either at the amino or carboxy
CK terminus of the CTL peptide. The amino terminus of either the immunogenic peptide or the T helper peptide may be
C acylated.00 In certain embodiments, the T helper peptide is one that is recognized by T helper cells present in a majority of a
0 genetically diverse population. This can be accomplished by selecting peptides that bind to many, most, or all of the HLA
class II molecules. Examples of such amino acid bind many HLA Class II molecules include sequences from antigens such
as tetanus toxoid at positions 830-843 (QYIKANSKFIGITE; SEQ ID NO: 44), Plasmodium falciparum circumsporozoite (CS)
protein at positions 378-398 (DIEKKIAKMEKASSVFNWNS; SEQ ID NO: 45), and Streptococcus 18kD protein at positions
116-131 (GAVDSILGGVATYGAA; SEQ ID NO: 46). Other examples include peptides bearing a DR 1-4-7 supermotif, or
either of the DR3 motifs.
Alternatively, it is possible to prepare synthetic peptides capable of stimulating T helper lymphocytes, in a loosely
HLA-restricted fashion, using amino acid sequences not found in nature (see, PCT publication WO 95/07707). These
synthetic compounds called Pan-DR-binding epitopes PADRETM Epimmune, Inc., San Diego, CA) are designed, most
preferably, to bind most HLA-DR (human HLA class II) molecules. For instance, a pan-DR-binding epitope peptide having.
the formula: XKXVAAWTLKAAX (SEQ ID NO: 47), where is either cyclohexylalanine, phenylalanine, or tyrosine, and a is
either o-alanine or L-alanine, has been found to bind to most HLA-DR alleles, and to stimulate the response of T helper
lymphocytes from most individuals, regardless of their HLA type. An altemative of a pan-DR binding epitope comprises all
natural amino acids and can be provided in the form of nucleic acids that encode the epitope.
HTL peptide epitopes can also be modified to alter their biological properties., For example, they can be modified
to include 0-amino acids to increase their resistance to proteases and thus extend their serum half life, or they can be
conjugated to other molecules such as lipids, proteins, carbohydrates, and the like to increase their biological activity. For
example, a T helper peptide can be conjugated to one or more palmitic acid chains at either the amino or carboxyl termini.
X.C.3. Combinations of CTL Peptides with T Cell Priming Agents
In some embodiments it may be desirable to include in the pharmaceutical compositions of the invention at least
one component which primes B lymphocytes or T lymphocytes. Lipids have been identified as agents capable of priming
CTL in vivo. For example, palmitic acid residues can be attached to the e-and a- amino groups of a lysine residue and then
linked, via one or more linking residues such as Gly, Gly-Gly-, Ser, Ser-Ser, or the like, to an immunogenic peptide.
The lipidated peptide can then be administered either directly in a micelle or particle, incorporated into a liposome, or
emulsified in an adjuvant, incomplete Freund's adjuvant. In a preferred embodiment, a particularly effective
immunogenic composition comprises palmitic acid attached to e- and a- amino groups of Lys, which is attached via linkage,
Ser-Ser, to the amino terminus of the immunogenic peptide.
As another example of lipid priming of CTL responses, E. coli lipoproteins, such as tripalmitoyl-S-
glycerylcysteinlyseryl- serine (P3CSS) can be used to prime virus specific CTL when covalently attached to an appropriate0 0 peptide (see, Deres, et at., Nature 342:561, 1989), Peptides of the invention can be coupled to P3CSS, for example,
0 and the lipopeptide administered to an Individual to prime specifically an immune response to the target antigen. Moreover,
because the induction of neutralizing antibodies can also be primed with P3CSS-conjugated epitopes, two such compositions
can be combined to more effectively elicit both humoral and cell-mediated responses.
X.C.4. Vaccine Compositions Comprising DC Pulsed with CTL andlor HTL Peptides
O An embodiment of a vaccine composition in accordance with the invention comprises ex vivo administration of a
cocktail of epitope-bearing peptides to PBMC, or isolated DC therefrom, from the patient's blood. A pharmaceutical to
facilitate harvesting of DC can be used, such as ProgenipoietinTM (Pharmacia-Monsanto, St Louis, MO) or GM-CSFIIL-4.
After pulsing the DC with peptides and prior to reinfusion into patients, the DC are washed to remove unbound peptides. In
C= this embodiment, a vaccine comprises peptide-pulsed DCs which present the pulsed peptide epitopes complexed with HLA
molecules on their surfaces.
00 The DC can be pulsed ex vivo with a cocktail of peptides, some of which stimulate CTL responses to 191P4D12(b).
0 Optionally, a helper T cell (HTL) peptide, such as a natural or artificial loosely restricted HLA Class 11 peptide, can be
included to facilitate the CTL response. Thus, a vaccine in accordance with the invention is used to treat a cancer which
expresses or overexpresses 191P4D12(b).
X.D. Adoptive Immunotherapy
Antigenic 191P4D12(b)-related peptides are used to elicit a CTL and/or HTL response ex vivo, as well. The
resulting CTL or HTL cells, can be used to treat tumors in patients that do not respond to other conventional forms of
therapy, or will not respond to a therapeutic vaccine peptide or nucleic acid in accordance withithe invention. Ex vivo CTL or
HTL responses to a particular antigen are induced by incubating in tissue culture the patient's, or genetically compatible, CTL
or HTL precursor cells together with a source of antigen-presenting cells (APC), such as dendritic cells, and the appropriate
immunogenic peptide. After an appropriate incubation time (typically about 7-28 days), in which the precursor cells are
activated and expanded into effector cells, the cells are infused back into the patient, where they will destroy (CTL) or
facilitate destruction (HTL) of their specific target cell a tumor cell). Transfected dendritic cells may also be used as
antigen presenting cells.
X.E. Administration of Vaccines for Therapeutic or Prophylactic Purposes
Pharmaceutical and vaccine compositions of the invention are typically used to treat and/or prevent a cancer that
expresses or overexpresses 191P4D12(b). In therapeutic applications, peptide and/or nucleic acid compositions are
administered to a patient in an amount sufficient to elicit an effective B cell, CTL and/or HTL response to the antigen and to
cure or at least partially arrest or slow symptoms and/or complications. An amount adequate to accomplish this is defined as
'therapeutically effective dose." Amounts effective for this use will depend on, the particular composition administered,
the manner of administration, the stage and severity of the disease being treated, the weight and general state of health of
the patient, and the judgment of the prescribing physician.
For pharmaceutical compositions, the immunogenic peptides of the invention, or DNA encoding them, are
generally administered to an individual already bearing a tumor that expresses 191P4D12(b). The peptides or DNA
encoding them can be administered individually or as fusions of one or more peptide sequences. Patients can be treated
with the immunogenic peptides separately or in conjunction with other treatments, such as surgery, as appropriate.
For therapeutic use, administration should generally begin at the first diagnosis of 191 P4D1 2(b)-associated cancer.
00 This is followed by boosting doses until at least symptoms are substantially abated and for a period thereafter. The
0 embodiment of the vaccine composition including, but not limited to embodiments such as peptide cocktails,
C=K polyepitopic polypeptides, minigenes, or TAA-specific CTLs or pulsed dendritic cells) delivered to the patient may vary
according to the stage of the disease or the patient's health status. For example, in a patient with a tumor that expressest 191P4D12(b), a vaccine comprising 191P4D12(b)-specific CTL may be more efficacious in killing tumor cells in patient with
advanced disease than alternative embodiments.
CKl It is generally important to provide an amount of the peptide epitope delivered by a mode of administration
sufficient to stimulate effectively a cytotoxic T cell response; compositions which stimulate helper T cell responses can also
be given in accordance with this embodiment of the invention.
L\i The dosage for an initial therapeutic immunization generally occurs in a unit dosage range where the lower value is
LC about 1, 5, 50, 500, or 1,000 pg and the higher value is about 10,000; 20,000; 30,000; or 50,000 pg. Dosage values for a
CKl human typically range from about 500 pg to about 50,000 pg per 70 kilogram patient. Boosting dosages of between about000 1.0 pg to about 50,000 pg of peptide pursuant to a boosting regimen over weeks to months may be administered depending
Ci upon the patient's response and condition as determined by measuring the specific activity of CTL and HTL obtained from
the patient's blood. Administration should continue until at least clinical symptoms or laboratory tests indicate that the
neoplasia, has been eliminated or reduced and for a period thereafter. The dosages, routes of administration, and dose
schedules are adjusted in accordance with methodologies known in the art.
In certain embodiments, the peptides and compositions of the present Invention are employed In serious disease
states, that is, life-threatening or potentially life threatening situations. In such cases, as a result of the minimal amounts of
extraneous substances and the relative nontoxic nature of the peptides in preferred compositions of the invention, it is
possible and may be felt desirable by the treating physician to administer substantial excesses of these peptide compositions
relative to these stated dosage amounts.
The vaccine compositions of the invention can also be used purely as prophylactic agents. Generally the dosage
for an initial prophylactic immunization generally occurs in a unit dosage range where the lower value is about 1, 5, 50, 500,
or 1000 pg and the higher value is about 10,000; 20,000; 30,000; or 50,000 pg. Dosage values for a human typically range
from about 500 pg to about 50,000 pg per 70 kilogram patient. This is followed by boosting dosages of between about
pg to about 50,000 jig of peptide administered at defined Intervals from about four weeks to six months after the initial
administration of vaccine. The immunogenicity of the vaccine can be assessed by measuring the specific activity of CTL and
HTL obtained from a sample of the patient's blood.
The pharmaceutical compositions for therapeutic treatment are intended for parenteral, topical, oral, nasal,
intrathecal, or local as a cream or topical ointment) administration. Preferably, the pharmaceutical compositions are
administered parentally, intravenously, subcutaneously, intradermally, or Intramuscularly. Thus, the invention provides
compositions for parenteral administration which comprise a solution of the immunogenic peptides dissolved or suspended in
an acceptable carrier, preferably an aqueous carrier.
A variety of aqueous carriers may be used, water, buffered water, 0.8% saline, 0.3% glyclne, hyaluronic acid
and the like. These compositions may be sterilized by conventional, well-known sterilization techniques, or may be sterile
filtered. The resulting aqueous solutions may be packaged for use as is, or lyophilized, the lyophilized preparation being
combined with a sterile solution prior to administration.
The compositions may contain pharmaceutically acceptable auxiliary substances as required to approximate
physiological conditions, such as pH-adjusting and buffering agents, tonicity adjusting agents, wetting agents, preservatives,
and the like, for example, sodium acetate, sodium lactate, sodium chloride, potassium chloride, calcium chloride, sorbitan
monolaurate, triethanolamine oleate, etc.
00 The concentration of peptides of the invention in the pharmaceutical formulations can vary widely, from less
than about usually at or at least about 2% to as much as 20% to 50% or more by weight, and will be selected primarily
by fluid volumes, viscosities, etc., in accordance with the particular mode of administration selected.
c A human unit dose form of a composition is typically included in a pharmaceutical composition that comprises a
human unit dose of an acceptable carrier, in one embodiment an aqueous carrier, and is administered in a volume/quantity
0 that is known by those of skill in the art to be used for administration of such compositions to humans (see, Remington's
Pharmaceutical Sciences, 17 Edition, A. Gennaro, Editor, Mack Publishing Co., Easton, Pennsylvania, 1985). For example
a peptide dose for initial immunization can be from about 1 to about 50,000 pig, generally 100-5,000 Rpg, for a 70 kg patient.
For example, for nucleic acids an initial immunization may be performed using an expression vector in the form of naked
nucleic acid administered IM (or SC or ID) in the amounts of 0.5-5 mg at multiple sites. The nucleic acid (0.1 to 1000 Ig)
can also be administered using a gene gun. Following an incubation period of 3-4 weeks, a booster dose is then
00 administered. The booster can be recombinant fowlpox virus administered at a dose of 5-107 to 5x10 9 pfu.
For antibodies, a treatment generally involves repeated administration of the anti-191P4D12(b) antibody
preparation, via an acceptable route of administration such as intravenous Injection typically at a dose in the range of
about 0.1 to about 10 mg/kg body weight. In general, doses in the range of 10-500 mg mAb per week are effective and well
tolerated. Moreover, an initial loading dose of approximately 4 mg/kg patient body weight IV, followed by weekly doses of
about 2 mg/kg IV of the anti- 191P4D12(b) mAb preparation represents an acceptable dosing regimen. As appreciated by
those of skill in the art, various factors can influence the ideal dose in a particular case. Such factors include, for example,
half life of a composition, the binding affinity of an Ab, the immunogenicity of a substance, the degree of 191P4D12(b)
expression in the patient, the extent of circulating shed 191P4D12(b) antigen, the desired steady-state concentration level,
frequency of treatment, and the influence of chemotherapeutic or other agents used in combination with the treatment
method of the invention, as well as the health status of a particular patient. Non-limiting preferred human unit doses are, for
example, 500g 1mg, 1mg 50mg, 50mg 100mg, 100mg 200mg, 200mg 300mg, 400mg 500mg, 500mg 600mg,
600mg 700mg, 700mg 800mg, 800mg 900mg, 900mg ig, or 1mg 700mg. In certain embodiments, the dose is in a
range of 2-5 mglkg body weight, with follow on weekly doses of 1-3 mglkg; 0.5mg, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10mg/kg body
weight followed, in two, three or four weeks by weekly doses; 0.5 10mg/kg body weight, followed in two, three or
four weeks by weekly doses; 225, 250, 275, 300, 325, 350, 375, 400mg m2 of body area weekly; 1-600mg m2 of body area
weekly; 225-400mg m2 of body area weekly; these does can be followed by weekly doses for 2, 3, 4, 5, 6, 7, 8, 9, 19, 11, 12
or more weeks.
In one embodiment, human unit dose forms of polynuceotides comprise a suitable dosage range or effective
amount that provides any therapeutic effect As appreciated by one of ordinary skill in the art a therapeutic effect depends
on a number of factors, including the sequence of the polynucleotide, molecular weight of the polynucleotide and route of
administration. Dosages are generally selected by the physician or other health care professional in accordance with a
variety of parameters known in the art, such as severity of symptoms, history of the patient and the like. Generally, for a
polynucleotide of about 20 bases, a dosage range may be selected from, for example, an independently selected lower limit
such as about 0.1,0.25, 0.5, 1, 2, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 200, 300, 400 or 500 mg/kg up to an
independently selected upper limit, greater than the lower limit, of about 60, 80, 100, 200, 300, 400, 500, 750, 1000, 1500,
2000, 3000, 4000, 5000, 6000, 7000, 8000, 9000 or 10,000 mg/kg. For example, a dose may be about any of the following:
0.1 to 100 mg/kg, 0.1 to 50 mg/kg, 0.1 to 25 mg/kg, 0.1 to 10 mg/kg, 1 to 500 mg/kg, 100 to 400 mg/kg, 200 to 300 mg/kg, 1
to 100 mg/kg, 100 to 200 mg/kg, 300 to 400 mg/kg, 400 to 500 mg/kg, 500 to 1000 mg/kg, 500 to 5000 mg/kg, or 500 to
10,000 mg/kg. Generally, parenteral routes of administration may require higher doses of polynucleotide compared to more
00 direct application to the nucleotide to diseased tissue, as do polynucleotides of increasing length.
O In one embodiment, human unit dose forms of T-cells comprise a suitable dosage range or effective amount that
provides any therapeutic effect. As appreciated by one of ordinary skill in the art, a therapeutic effect depends on a number
of factors. Dosages are generally selected by the physician or other health care professional in accordance with a variety of
parameters known in the art, such as severity of symptoms, history of the patient and the like. A dose may be about 104
cells to about 106 cells, about 108 cells to about 108 cells, about 108 to about 1011 cells, or about 108 to about 5 x 1010 cells.
CN A dose may also about 106 cells/m 2 to about 1010 cells/m2 or about 106 cells/m 2 to about 108 cells/m 2
Proteins(s) of the invention, and/or nucleic acids encoding the protein(s), can also be administered via liposomes,
S which may also serve to: 1) target the proteins(s) to a particular tissue, such as lymphoid tissue; 2) to target selectively to
diseases cells; or, 3) to increase the half-life of the peptide composition. Liposomes include emulsions, foams, micelles,
S insoluble monolayers, liquid crystals, phospholipid dispersions, lamellar layers and the like. In these preparations, the
CK1 peptide to be delivered is incorporated as part of a liposome, alone or In conjunction with a molecule which binds to a00
receptor prevalent among lymphoid cells, such as monoclonal antibodies which bind to the CD45 antigen, or with other
therapeutic or immunogenic compositions. Thus, liposomes either filled or decorated with a desired peptide of the invention
can be directed to the site of lymphoid cells, where the liposomes then deliver the peptide compositions. Liposomes for use
in accordance with the invention are formed from standard vesicle-forming lipids, which generally include neutral and
negatively charged phospholipids and a sterol, such as cholesterol. The selection of lipids is generally guided by
consideration of, liposome size, acid lability and stability of the liposomes in the blood stream. A variety of methods are
available for preparing liposomes, as described in, Szoka, et al., Ann. Rev. Biophys. Bioeng. 9:467 (1980), and U.S.
Patent Nos. 4,235,871, 4,501,728, 4,837,028, and 5,019,369.
For targeting cells of the immune system, a ligand to be incorporated into the liposome can include, e.g.,
antibodies or fragments thereof specific for cell surface determinants of the desired immune system cells. A liposome
suspension containing a peptide may be administered intravenously, locally, topically, etc. In a dose which varies according
to, inter alia, the manner of administration, the peptide being delivered, and the stage of the disease being treated.
For solid compositions, conventional nontoxic solid carriers may be used which include, for example,
pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharin, talcum, cellulose, glucose,
sucrose, magnesium carbonate, and the like. For oral administration, a pharmaceutically acceptable nontoxic composition is
formed by incorporating any of the normally employed excipients, such as those carriers previously listed, and generally
of active ingredient, that is, one or more peptides of the invention, and more preferably at a concentration of 25%-75%.
For aerosol administration, immunogenic peptides are preferably supplied in finely divided form along with a
surfactant and propellant. Typical percentages of peptides are about 0.01%-20% by weight, preferably about The
surfactant must, of course, be nontoxic, and preferably soluble in the propellant. Representative of such agents are the
esters or partial esters of fatty acids containing from about 6 to 22 carbon atoms, such as caproic, octanoic, lauric, palmitic,
stearic, linoleic, linolenic, olesteric and oleic acids with an aliphatic polyhydric alcohol or its cyclic anhydride. Mixed esters,
such as mixed or natural glycerides may be employed. The surfactant may constitute about 0.1%-20% by weight of the
composition, preferably about 0.25-5%. The balance of the composition Is ordinarily propellant. A carrier can also be
included, as desired, as with, lecithin for intranasal delivery.
XI.) Diagnostic and Prognostic Embodiments of 191P4D12(b).
As disclosed herein, 191P4D12(b) polynucleotides, polypeptides, reactive cytotoxic T cells (CTL), reactive helper T
cells (HTL) and anti-polypeptide antibodies are used in well known diagnostic, prognostic and therapeutic assays that
examine conditions associated with dysregulated cell growth such as cancer, in particular the cancers listed in Table I (see,
both its specific pattern of tissue expression as well as its overexpression in certain cancers as described for example in
00 the Example entitled "Expression analysis of 191P4D12(b) in normal tissues, and patient specimens").O
191P4D12(b) can be analogized to a prostate associated antigen PSA, the archetypal marker that has been used
by medical practitioners for years to Identify and monitor the presence of prostate cancer (see, Merrill et al., J. Urol.
t 163(2): 503-5120 (2000); Polascik et al., J. Urol. Aug; 162(2):293-306 (1999) and Fortier et al., J. Nat. Cancer Inst. 91(19):
1635-1640(1999)). A variety of other diagnostic markers are also used in similar contexts including p53 and K-ras (see, e.g.,
S Tulchinsky et al., Int J Mol Med 1999 Jul 4(1):99-102 and Minimoto et al., Cancer Detect Prev 2000;24(1):1-12). Therefore,
this disclosure of 191 P4D12(b) polynucleotides and polypeptides (as well as 191 P4D12(b) polynucleotide probes and anti-
191P4D12(b) antibodies used to identify the presence of these molecules) and their properties allows skilled artisans to
utilize these molecules in methods that are analogous to those used, for example, in a variety of diagnostic assays directed
to examining conditions associated with cancer.
STypical embodiments of diagnostic methods which utilize the 191 P4D12(b) polynucleotides, polypeptides, reactive
00 T cells and antibodies are analogous to those methods from well-established diagnostic assays, which employ, PSA
polynucleotides, polypeptides, reactive T cells and antibodies. For example, just as PSA polynucleotides are used as probes
CK (for example in Northern analysis, see, Sharief et al., Biochem. Mol. Biol. Int. 33(3):567-74(1994)) and primers (for
example in PCR analysis, see, Okegawa et al., J. Urol. 163(4): 1189-1190 (2000)) to observe the presence and/or the
level of PSA mRNAs in methods of monitoring PSA overexpression or the metastasis of prostate cancers, the 191P4D12(b)
polynucleotides described herein can be utilized in the same way to detect 191P4D12(b) overexpression or the metastasis of
prostate and other cancers expressing this gene. Alternatively, just as PSA polypeptides are used to generate antibodies
specific for PSA which can then be used to observe the presence and/or the level of PSA proteins in methods to monitor
PSA protein overexpression (see, Stephan et al., Urology 55(4):560-3 (2000)) or the metastasis of prostate cells (see,
Alanen et Pathol. Res. Pract. 192(3):233-7 (1996)), the 191P4D12(b) polypeptides described herein can be utilized
to generate antibodies for use in detecting 191P4D12(b) overexpression or the metastasis of prostate cells and cells of other
cancers expressing this gene.
Specifically, because metastases involves the movement of cancer cells from an organ of origin (such as the lung
or prostate gland etc.) to a different area of the body (such as a lymph node), assays which examine a biological sample for
the presence of cells expressing 191P4D12(b) polynucleotides and/or polypeptides can be used to provide evidence of
metastasis. For example, when a biological sample from tissue that does not normally contain 191P4D12(b)-expressing cells
(lymph node) is found to contain 191P4D12(b)-expressing cells such as the 191P4D12(b) expression seen in LAPC4 and
LAPC9, xenografts isolated from lymph node and bone metastasis, respectively, this finding is indicative of metastasis.
Alternatively 191 P4D12(b) polynucleotides and/or polypeptides can be used to provide evidence of cancer, for
example, when cells in a biological sample that do not normally express 191P4D12(b) or express 191P4D12(b) at a different
level are found to express 191P4D12(b) or have an increased expression of 191P4D12(b) (see, the 191P4D12(b)
expression in the cancers listed in Table I and in patient samples etc. shown in the accompanying Figures). In such assays,
artisans may further wish to generate supplementary evidence of metastasis by testing the biological sample for the
presence of a second tissue restricted marker (in addition to 191P4D12(b)) such as PSA, PSCA etc. (see, Alanen et al.,
Pathol. Res. Pract. 192(3): 233-237 (1996)).
The use of immunohistochemistry to identify the presence of a 191P4D12(b) polypeptide within a tissue section
can indicate an altered state of certain cells within that tissue. It is well understood in the art that the ability of an antibody to
localize to a polypeptide that is expressed in cancer cells is a way of diagnosing presence of disease, disease stage,
progression and/or tumor aggressiveness. Such an antibody can also detect an altered distribution of the polypeptide within
00 the cancer cells, as compared to corresponding non-malignant tissue.
O The 191P4D12(b) polypeptide and immunogenic compositions are also useful in view of the phenomena of altered
C subcellular protein localization in disease states. Alteration of cells from normal to diseased state causes changes in cellular
morphology and Is often associated with changes in subcellular protein localizationldistribution. For example, cell membrane
S proteins that are expressed in a polarized manner in normal cells can be altered in disease, resulting in distribution of the
protein in a non-polar manner over the whole cell surface.
CK1 The phenomenon of altered subcellular protein localization in a disease state has been demonstrated with MUC1
and Her2 protein expression by use of immunohistochemical means. Normal epithelial cells have a typical apical distribution
S of MUC1, in addition to some supranuclear localization of the glycoprotein, whereas malignant lesions often demonstrate an
S apolar staining pattern (Diaz et al, The Breast Journal, 7; 40-45 (2001); Zhang et al, Clinical Cancer Research, 4; 2669-2676
rC (1998): Cao, et al, The Journal of Histochemistry and Cytochemistry, 45:1547-1557 (1997)). In addition, normal breast
rC epithelium is either negative for Her2 protein or exhibits only a basolateral distribution whereas malignant cells can express00
the protein over the whole cell surface (De Potter, et al, International Journal of Cancer, 44; 969-974 (1989): McCormick, et
al, 117; 935-943 (2002)). Alternatively, distribution of the protein may be altered from a surface only localization to include
diffuse cytoplasmic expression in the diseased state. Such an example can be seen with MUC1 (Diaz, et al, The Breast
Journal, 7: 40-45 (2001)).
Alteration in the localization/distribution of a protein in the cell, as detected by immunohistochemical methods, can
also provide valuable information concerning the favorability of certain treatment modalities. This last point is illustrated by a
situation where a protein may be intracellular in normal tissue, but cell surface in malignant cells; the cell surface location
makes the cells favorably amenable to antibody-based diagnostic and treatment regimens. When such an alteration of
protein localization occurs for 191P4D12(b), the 191P4D12(b) protein and immune responses related thereto are very useful.
Accordingly, the ability to determine whether alteration of subcellular protein localization occurred for 24P4C12 make the
191P4D12(b) protein and immune responses related thereto very useful. Use of the 191P4D12(b) compositions allows thoseskilled in the art to make important diagnostic and therapeutic decisions.
Immunohistochemical reagents specific to 191P4D12(b) are also useful to detect metastases of tumors expressing
191P4D12(b) when the polypeptide appears in tissues where 191P4D12(b) is not normally produced.
Thus, 191P4D12(b) polypeptides and antibodies resulting from immune responses thereto are useful in a variety of
important contexts such as diagnostic, prognostic, preventative and/or therapeutic purposes known to those skilled in the art.
Just as PSA polynucleotide fragments and polynucleotide variants are employed by skilled artisans for use in
methods of monitoring PSA, 191P4D12(b) polynucleotide fragments and polynucleotide variants are used in an analogous
manner. In particular, typical PSA polynucleotides used in methods of monitoring PSA are probes or primers which consist
of fragments of the PSA cDNA sequence. Illustrating this, primers used to PCR amplify a PSA polynucleotide must include
less than the whole PSA sequence to function in the polymerase chain reaction. In the context of such PCR reactions,
skilled artisans generally create a variety of different polynucleotide fragments that can be used as primers in order to amplify
different portions of a polynucleotide of interest or to optimize amplification reactions (see, Caetano-Anolles, G.
Biotechniques 25(3): 472-476, 478-480 (1998); Robertson et al., Methods Mol. Biol. 98:121-154 (1998)). An additional
illustration of the use of such fragments is provided in the Example entitled "Expression analysis of 191P4D12(b) in normal
tissues, and patient specimens," where a 191P4D12(b) polynucleotide fragment is used as a probe to show the expression
of 191P4D12(b) RNAs in cancer cells. In addition, variant polynucleotide sequences are typically used as primers andprobes for the corresponding mRNAs in PCR and Northern analyses (see, Sawai et al., Fetal Diagn. Ther. 1996 Nov-
Dec 11(6):407-13 and Current Protocols In Molecular Biology, Volume 2, Unit 2, Frederick M. Ausubel et al. eds., 1995)).
Polynucleotide fragments and variants are useful in this context where they are capable of binding to a target polynucleotide
sequence a 191P4D12(b) polynucleotide shown in Figure 2 or variant thereof) under conditions of high stringency.
00 Furthermore, PSA polypeptides which contain an epitope that can be recognized by an antibody or T cell that
O specifically binds to that epitope are used in methods of monitoring PSA. 191P4D12(b) polypeptide fragments and
polypeptide analogs or variants can also be used in an analogous manner. This practice of using polypeptide fragments or
polypeptide variants to generate antibodies (such as anti-PSA antibodies or T cells) is typical in the art with a wide variety of
systems'such as fusion proteins being used by practitioners (see, Current Protocols In Molecular Biology, Volume 2,
Unit 16, Frederick M. Ausubel et al. eds., 1995). In this context, each epitope(s) functions to provide the architecture with
which an antibody or T cell is reactive. Typically, skilled artisans create a variety of different polypeptide fragments that can
be used in order to generate immune responses specific for different portions of a polypeptide of interest (see, U.S.
S Patent No. 5,840,501 and U.S. Patent No. 5,939,533). For example it may be preferable to utilize a polypeptide comprising
CN one of the 191P4D12(b) biological motifs discussed herein or a motif-bearing subsequence which is readily identified by one
of skill in the art based on motifs available in the art. Polypeptide fragments, variants or analogs are typically useful in this
0c context as long as they comprise an epitope capable of generating an antibody or T cell specific for a target polypeptide
sequence a 191P4D12(b) polypeptide shown in Figure 3).
C As shown herein, the 191P4D12(b) polynudeotides and polypeptides (as well as the 191P4D12(b) polynucleotide
probes and anti-191P4D12(b) antibodies or T cells used to identify the presence of these molecules) exhibit specific
properties that make them useful in diagnosing cancers such as those listed in Table I. Diagnostic assays that measure the
presence of 191P4D12(b) gene products, in order to evaluate the presence or onset of a disease condition described herein,
such as prostate cancer, are used to identify patients for preventive measures or further monitoring, as has been done so
successfully with PSA. Moreover, these materials satisfy a need in the art for molecules having similar or complementary
characteristics to PSA in situations where, for example, a definite diagnosis of metastasis of prostatic origin cannot be made
on the basis of a test for PSA alone (see, Alanen et al., Pathol. Res. Pract. 192(3): 233-237 (1996)), and consequently,
materials such as 191P4D12(b) polynucleotides and polypeptides (as well as the 191P4D12(b) polynucleotide probes and
anti-191P4D12(b) antibodies used to identify the presence of these molecules) need to be employed to confirm a metastases
of prostatic origin.
Finally, in addition to their use in diagnostic assays, the 191P4D12(b) polynucleotides disclosed herein have a
number of other utilities such as their use in the identification of oncogenetic associated chromosomal abnormalities in the
chromosomal region to which the 191P4D12(b) gene maps (see the Example entitled "Chromosomal Mapping of
191P4D12(b)" below). Moreover, in addition to their use in diagnostic assays, the 191P4D12(b)-related proteins and
polynucleotides disclosed herein have other utilities such as their use in the forensic analysis of tissues of unknown origin
(see, Takahama K Forensic Sc Int 1996 Jun 28;80(1-2): 63-9).
Additionally, 191P4D12(b)-related proteins or polynucleotides of the invention can be used to treat a pathologic
condition characterized by the over-expression of 191P4D12(b). For example, the amino acid or nucleic acid sequence of
Figure 2 or Figure 3, or fragments of either, can be used to generate an immune response to a 191P4D12(b) antigen.
Antibodies or other molecules that react with 191P4D12(b) can be used to modulate the function of this molecule, and
thereby provide a therapeutic benefit.
XII.) Inhibition of 191P4D12(b) Protein Function
The invention includes various methods and compositions for inhibiting the binding of 191P4D12(b) to its binding
partner or its association with other protein(s) as well as methods for inhibiting 191P4D12(b) function.
XII.A.) Inhibition of 191P4D12(b) With Intracellular Antibodies
OO In one approach, a recombinant vector that encodes single chain antibodies that specifically bind to 191P4D12(b)
0 are introduced into 191P4D12(b) expressing cells via gene transfer technologies. Accordingly, the encoded single chain
CN anti-191P4D12(b) antibody Is expressed intracellularly, binds to 191P4D12(b) protein, and thereby inhibits its function.
Methods for engineering such intracellular single chain antibodies are well known. Such intracellular antibodies, also known
as "intrabodies", are specifically targeted to a particular compartment within the cell, providing control over where the
s inhibitory activity of the treatment is focused. This technology has been successfully applied in the art (for review, see
C Richardson and Marasco, 1995, TIBTECH vol. 13). Intrabodies have been shown to virtually eliminate the expression of
otherwise abundant cell surface receptors (see, Richardson et al., 1995, Proc. Natl. Acad. Scd. USA 92: 3137-3141;
Beerli et al., 1994, J. Biol. Chem. 289: 23931-23936; Deshane et al., 1994, Gene Ther. 1: 332-337).
iSingle chain antibodies comprise the variable domains of the heavy and light chain joined by a flexible linker
polypeptide, and are expressed as a single polypeptide. Optionally, single chain antibodies are expressed as a single chain
C- variable region fragment joined to the light chain constant region. Well-known intracellular trafficking signals are engineered000 into recombinant polynucleotide vectors encoding such single chain antibodies in order to target precisely the intrabody to
O the desired intracellular compartment. For example, intrabodies targeted to the endoplasmic reticulum (ER) are engineered
to incorporate a leader peptide and, optionally, a C-terminal ER retention signal, such as the KDEL amino acid motif.
Intrabodies intended to exert activity in the nucleus are engineered to include a nuclear localization signal. Lipid moieties are
joined to intrabodies in order to tether the intrabody to the cytosolic side of the plasma membrane. Intrabodies can also be
targeted to exert function in the cytosol. For example, cytosolic intrabodies are used to sequester factors within the cytosol,
thereby preventing them from being transported to their natural cellular destination.
In one embodiment, intrabodies are used to capture 191P4D12(b) in the nucleus, thereby preventing its activity
within the nucleus. Nuclear targeting signals are engineered into such 191P4D12(b) intrabodies in order to achieve the
desired targeting. Such 191P4D12(b) intrabodies are designed to bind specifically to a particular 191P4D12(b) domain. In
another embodiment, cytosolic intrabodies that specifically bind to a 191P4D12(b) protein are used to prevent 191P4D12(b)
from gaining access to the nucleus, thereby preventing it from exerting any biological activity within the nucleus
preventing 191P4D12(b) from forming transcription complexes with other factors).
In order to specifically direct the expression of such intrabodies to particular cells, the transcription of the intrabody
Is placed under the regulatory control of an appropriate tumor-specific promoter andlor enhancer. In order to target intrabody
expression specifically to prostate, for example, the PSA promoter and/or promoter/enhancer can be utilized (See, for
example, U.S. Patent No. 5,919,652 issued 6 July 1999).
XII.B.) Inhibition of 191P4D12(b) with Recombinant Proteins
In another approach, recombinant molecules bind to 191P4D12(b) and thereby inhibit 191P4D12(b) function. For
example, these recombinant molecules prevent or inhibit 191P4D12(b) from accessing/binding to its binding partner(s) or
associating with other protein(s). Such recombinant molecules can, for example, contain the reactive part(s) of a 191P4D12(b)
specific antibody molecule. In a particular embodiment, the 191P4D12(b) binding domain of a 191P4D12(b) binding partner Is
engineered into a dimeric fusion protein, whereby the fusion protein comprises two 191P4D12(b) ligand binding domains linked to
the Fc portion of a human IgG, such as human IgG1. Such IgG portion can contain, for example, the CH2 and CH3 domains and
the hinge region, but not the CH1 domain. Such dimeric fusion proteins are administered in soluble form to patients suffering from
a cancer associated with the expression of 191P4D12(b), whereby the dimeric fusion protein specifically binds to 191P4D12(b)
and blocks 191P4D12(b) interaction with a binding partner. Such dimeric fusion proteins are further combined into multimeric
proteins using known antibody linking technologies.
XII.C.) Inhibition of 191P4D12(b) Transcription or Translation
00 The present invention also comprises various methods and compositions for inhibiting the transcription of the
S 191P4D12(b) gene. Similarly, the invention also provides methods and compositions for inhibiting the translation of
191P4D12(b) mRNA into protein.
SIn one approach, a method of inhibiting the transcription of the 191P4D12(b) gene comprises contacting the
191P4D12(b) gene with a 191P4D12(b) antisense polynucleotide. In another approach, a method of inhibiting 191P4D12(b)
mRNA translation comprises contacting a 191P4D12(b) mRNA with an antisense polynucleotide. In another approach, a
191P4D12(b) specific ribozyme is used to cleave a 191P4D12(b) message, thereby inhibiting translation. Such antisense
and ribozyme based methods can also be directed to the regulatory regions of the 191P4D12(b) gene, such as 191P4D12(b)
promoter and/or enhancer elements. Similarly, proteins capable of inhibiting a 191P4D12(b) gene transcription factor are
C used to inhibit 191P4D12(b) mRNA transcription. The various polynucleotides and compositions useful in the
aforementioned methods have been described above. The use of antisense and ribozyme molecules to inhibit transcription
00 and translation is well known in the art.
SOther factors that inhibit the transcription of 191P4D12(b) by interfering with 191P4D12(b) transcriptional activation
C are also useful to treat cancers expressing 191P4D12(b). Similarly, factors that interfere with 191P4D12(b) processing are
useful to treat cancers that express 191P4D12(b). Cancer treatment methods utilizing such factors are also within the scope
of the invention.
XII.D.) General Considerations for Therapeutic Strategies
Gene transfer and gene therapy technologies can be used to deliver therapeutic polynucleotide molecules to tumor cells
synthesizing 191P4D12(b) antisense, ribozyme, polynucleotides encoding intrabodies and other 191P4D12(b) inhibitory
molecules). A number of gene therapy approaches are known in the art Recombinant vectors encoding 191P4D12(b) antisense
polynucleotides, ribozymes, factors capable of interfering with 191P4D12(b) transcription, and so forth, can be delivered to target
tumor cells using such gene therapy approaches.
The above therapeutic approaches can be combined with any one of a wide variety of surgical, chemotherapy or
radiation therapy regimens. The therapeutic approaches of the invention can enable the use of reduced dosages of
chemotherapy (or other therapies) and/or less frequent administration, an advantage for all patients and particularly for those that
do not tolerate the toxicity of the chemotherapeutic agent well.
The anti-tumor activity of a particular composition antisense, ribozyme, intrabody), or a combination of such
compositions, can be evaluated using various in vitro and in vivo assay systems. In vitro assays that evaluate therapeutic activity
include cell growth assays, soft agar assays and other assays indicative of tumor promoting activity, binding assays capable of
determining the extent to which a therapeutic composition will inhibit the binding of 191P4D12(b) to a binding partner, etc.
In vivo, the effect of a 191P4D12(b) therapeutic composition can be evaluated in a suitable animal model. For example,
xenogenic prostate cancer models can be used, wherein human prostate cancer explants or passaged xenograft tissues are
Introduced into immune compromised animals, such as nude or SCID mice (Klein et al., 1997, Nature Medicine 3: 402-408). For
example, PCT Patent Application W098/16628 and U.S. Patent 6,107,540 describe various xenograft models of human
prostate cancer capable of recapitulating the development of primary tumors, micrometastasis, and the formation of
osteoblastic metastases characteristic of late stage disease. Efficacy can be predicted using assays that measure inhibition
of tumor formation, tumor regression or metastasis, and the like.
In vivo assays that evaluate the promotion of apoptosis are useful in evaluating therapeutic compositions. In one
embodiment, xenografts from tumor bearing mice treated with the therapeutic composition can be examined for the presence
of apoptotic foci and compared to untreated control xenograft-bearing mice. The extent to which apoptotic fod are found in
the tumors of the treated mice provides an indication of the therapeutic efficacy of the composition.
The therapeutic compositions used In the practice of the foregoing methods can be formulated into pharmaceutical
LC- compositions comprising a carrier suitable for the desired delivery method. Suitable carriers include any material that when
combined with the therapeutic composition retains the anti-tumor function of the therapeutic composition and is generally
i non-reactive with the patient's Immune system. Examples Include, but are not limited to, any of a number of standard
pharmaceutical carriers such as sterile phosphate buffered saline solutions, bacteriostatic water, and the like (see, generally,
C-K Remington's Pharmaceutical Sciences 16(h Edition, A. Osal., Ed., 1980).
Therapeutic formulations can be solubilized and administered via any route capable of delivering the therapeutic
composition to the tumor site. Potentially effective routes of administration include, but are not limited to, intravenous,
Lq parenteral, intraperitoneal, intramuscular, intratumor, intradermal, intraorgan, orthotopic, and the like. A preferred formulation
Cl for intravenous injection comprises the therapeutic composition in a solution of preserved bacteriostatic water, sterile
LC- unpreserved water, and/or diluted in polyvinylchloride or polyethylene bags containing 0.9% sterile Sodium Chloride for00SInjection, USP. Therapeutic protein preparations can be lyophilized and stored as sterile powders, preferably under vacuum,
Sand then reconstituted in bacteriostatic water (containing for example, benzyl alcohol preservative) or in sterile water prior to
injection.
Dosages and administration protocols for the treatment of cancers using the foregoing methods will vary with the
method and the target cancer, and will generally depend on a number of other factors appreciated in the art.
XIII.) Identification, Characterization and Use of Modulators of 191 P4D12(b)
Methods to Identify and Use Modulators
In one embodiment, screening is performed to identify modulators that induce or suppress a particular expression
profile, suppress or induce specific pathways, preferably generating the associated phenotype thereby. In another
embodiment, having identified differentially expressed genes important in a particular state; screens are performed to identify
modulators that alter expression of individual genes, either increase or decrease. In another embodiment, screening is
performed to identify modulators that alter a biological function of the expression product of a differentially expressed gene.
Again, having identified the importance of a gene in a particular state, screens are performed to identify agents that bind
and/or modulate the biological activity of the gene product.
In addition, screens are done for genes that are induced In response to a candidate agent After identifying a
modulator (one that suppresses a cancer expression pattern leading to a normal expression pattern, or a modulator of a
cancer gene that leads to expression of the gene as in normal tissue) a screen is performed to identify genes that are
specifically modulated in response to the agent. Comparing expression profiles between normal tissue and agent-treated
cancer tissue reveals genes that are not expressed in normal tissue or cancer tissue, but are expressed in agent treated
tissue, and vice versa. These agent-specific sequences are identified and used by methods described herein for cancer
genes or proteins. In particular these sequences and the proteins they encode are used in marking or identifying agent-
treated cells. In addition, antibodies are raised against the agent-induced proteins and used to target novel therapeutics to
the treated cancer tissue sample.
Modulator-related Identification and Screening Assays:
Gene Expression-related Assays
Proteins, nucleic acids, and antibodies of the invention are used in screening assays. The cancer-associated
proteins, antibodies, nucleic acids, modified proteins and cells containing these sequences are used in screening assays,
such as evaluating the effect of drug candidates on a "gene expression profile," expression profile of polypeptides or
alteration of biological function. In one embodiment, the expression profiles are used, preferably in conjunction with high
00 throughput screening techniques to allow monitoring for expression profile genes after treatment with a candidate agent
Davis, GF, et al, J Biol Screen 7:69 (2002); Zlokarnik, et al., Science 279:84-8 (1998); Heid, Genome Res 6:986-
Lc 94,1996).
The cancer proteins, antibodies, nucleic acids, modified proteins and cells containing the native or modified cancer
S proteins or genes are used In screening assays. That Is, the present invention comprises methods for screening for
S compositions which modulate the cancer phenotype or a physiological function of a cancer protein of the invention. This is
done on a gene itself or by evaluating the effect of drug candidates on a "gene expression profile" or biological function. In
one embodiment, expression profiles are used, preferably in conjunction with high throughput screening techniques to allow
monitoring after treatment with a candidate agent, see Zlokamik, supra.
rli A variety of assays are executed directed to the genes and proteins of the invention. Assays are run on an
individual nucleic acid or protein level. That is, having identified a particular gene as up regulated in cancer, test compounds
00 are screened for the ability to modulate gene expression or for binding to the cancer protein of the invention. "Modulation" in
this context includes an increase or a decrease in gene expression. The preferred amount of modulation will depend on the
Cl original change of the gene expression in normal versus tissue undergoing cancer, with changes of at least 10%, preferably
more preferably 100-300%, and in some embodiments 300-1000% or greater. Thus, if a gene exhibits a 4-fold
increase in cancer tissue compared to normal tissue, a decrease of about four-fold is often desired; similarly, a
decrease in cancer tissue compared to normal tissue a target value of a 10-fold increase in expression by the test compound
is often desired. Modulators that exacerbate the type of gene expression seen in cancer are also useful, as an
upregulated target in further analyses.
The amount of gene expression is monitored using nucleic acid probes and the quantification of gene expression
levels, or, alternatively, a gene product itself is monitored, through the use of antibodies to the cancer protein and
standard immunoassays. Proteomics and separation techniques also allow for quantification of expression.
Expression Monitoring to Identify Compounds that Modify Gene Expression
In one embodiment, gene expression monitoring, an expression profile, is monitored simultaneously for a
number of entities. Such profiles will typically Involve one or more of the genes of Figure 2. In this embodiment, cancer
nucleic acid probes are attached to biochips to detect and quantify cancer sequences in a particular cell. Alternatively, PCR
can be used. Thus, a series, wells of a microtiter plate, can be used with dispensed primers in desired wells. A PCR
reaction can then be performed and analyzed for each well.
Expression monitoring is performed to identify compounds that modify the expression of one or more cancer-
associated sequences, a polynucleotide sequence set out in Figure 2. Generally, a test modulator is added to the cells
prior to analysis. Moreover, screens are also provided to identify agents that modulate cancer, modulate cancer proteins of
the invention, bind to a cancer protein of the invention, or interfere with the binding of a cancer protein of the invention and
an antibody or other binding partner.
In one embodiment, high throughput screening methods involve providing a library containing a large number of
potential therapeutic compounds (candidate compounds). Such "combinatorial chemical libraries" are then screened in one
or more assays to identify those library members (particular chemical species or subclasses) that display a desired
characteristic activity. The compounds thus identified can serve as conventional "lead compounds," as compounds for
screening, or as therapeutics.
In certain embodiments, combinatorial libraries of potential modulators are screened for an ability to bind to a
cancer polypeptide or to modulate activity. Conventionally, new chemical entities with useful properties are generated by
identifying a chemical compound (called a "lead compound") with some desirable property or activity, inhibiting activity,
creating variants of the lead compound, and evaluating the property and activity of those variant compounds. Often, high000 throughput screening (HTS) methods are employed for such an analysis.
SAs noted above, gene expression monitoring is conveniently used to test candidate modulators protein,
S nucleic acid or small molecule). After the candidate agent has been added and the cells allowed to Incubate for a period, the
sample containing a target sequence to be analyzed is, added to a blochip.
If required, the target sequence is prepared using known techniques. For example, a sample Is treated to lyse the
C' cells, using known lysis buffers, electroporation, etc., with purification and/or amplification such as PCR performed as
appropriate. For example, an in vitro transcription with labels covalently attached to the nucleotides is performed. Generally,
the nucleic acids are labeled with biotin-FITC or PE, or with cy3 or
The target sequence can be labeled with, a fluorescent, a chemiluminescent, a chemical, or a radioactive
C1 signal, to provide a means of detecting the target sequence's specific binding to a probe. The label also can be an enzyme,
Ssuch as alkaline phosphatase or horseradish peroxidase, which when provided with an appropriate substrate produces a
00 product that is detected. Alternatively, the label is a labeled compound or small molecule, such as an enzyme inhibitor, that
S binds but is not catalyzed or altered by the enzyme. The label also can be a moiety or compound, such as, an epitope tag or
biotin which specifically binds to streptavidin. For the example of biotin, the streptavldin is labeled as described above,
thereby, providing a detectable signal for the bound target sequence. Unbound labeled streptavidin Is typically removed prior
to analysis.
As will be appreciated by those in the art, these assays can be direct hybridization assays or can comprise
"sandwich assays", which include the use of multiple probes, as is generally outlined in U.S. Patent Nos. 5, 681,702;
5,597,909; 5,545,730; 5,594,117; 5,591,584; 5,571,670; 5,580,731; 5,571,670; 5,591,584; 5,624,802; 5,635,352; 5,594,118;
5,359,100; 5,124, 246; and 5,681,697. In this embodiment, in general, the target nucleic acid Is prepared as outlined above,
and then added to the biochip comprising a plurality of nucleic acid probes, under conditions that allow the formation of a
hybridization complex.
A variety of hybridization conditions are used in the present invention, including high, moderate and low stringency
conditions as outlined above. The assays are generally run under stringency conditions which allow formation of the label
probe hybridization complex only in the presence of target. Stringency can be controlled by altering a step parameter that is
a thermodynamic variable, including, but not limited to, temperature, formamide concentration, salt concentration, chaotropic
.salt concentration pH, organic solvent concentration, etc. These parameters may also be used to control non-specific
binding, as is generally outlined in U.S. Patent No. 5,681,697. Thus, it can be desirable to perform certain steps at higher
stringency conditions to reduce non-specific binding.
The reactions outlined herein can be accomplished in a variety of ways. Components of the reaction can be added
simultaneously, or sequentially, in different orders, with preferred embodiments outlined below. In addition, the reaction may
include a variety of other reagents. These include salts, buffers, neutral proteins, e.g. albumin, detergents, etc. which can be
used to facilitate optimal hybridization and detection, and/or reduce nonspecific or background Interactions. Reagents that
otherwise improve the efficiency of the assay, such as protease inhibitors, nuclease Inhibitors, anti-microbial agents, etc.,
may also be used as appropriate, depending on the sample preparation methods and purity of the target. The assay data
are analyzed to determine the expression levels of individual genes, and changes in expression levels as between states,
forming a gene expression profile.
Biological Activity-related Assays
The invention provides methods identify or screen for a compound that modulates the activity of a cancer-related
gene or protein of the invention. The methods comprise adding a test compound, as defined above, to a cell comprising a
00 cancer protein of the invention. The cells contain a recombinant nucleic acid that encodes a cancer protein of the invention.
O In another embodiment, a library of candidate agents is tested on a plurality of cells.
CK1 In one aspect, the assays are evaluated in the presence or absence or previous or subsequent exposure of
S physiological signals, e.g. hormones, antibodies, peptides, antigens, cytokines, growth factors, action potentials,
pharmacological agents including chemotherapeutics, radiation, carcinogenics, or other cells cell-cell contacts). In
another example, the determinations are made at different stages of the cell cycle process. In this way, compounds that
C1 modulate genes or proteins of the invention are identified. Compounds with pharmacological activity are able to enhance or
interfere with the activity of the cancer protein of the invention. Once Identified, similar structures are evaluated to identify
critical structural features of the compound.
CNS In one embodiment, a method of modulating inhibiting) cancer cell division is provided; the method
c comprises administration of a cancer modulator. In another embodiment, a method of modulating inhibiting) cancer is
Cr provided; the method comprises administration of a cancer modulator. In a further embodiment, methods of treating cells or00
individuals with cancer are provided; the method comprises administration of a cancer modulator.
SIn one embodiment, a method for modulating the status of a cell that expresses a gene of the invention is provided.
As used herein status comprises such art-accepted parameters such as growth, proliferation, survival, function, apoptosis,
senescence, location, enzymatic activity, signal transduction, etc. of a cell. In one embodiment, a cancer inhibitor is an
antibody as discussed above. In another embodiment, the cancer inhibitor is an antisense molecule. A variety of cell
growth, proliferation, and metastasis assays are known to those of skill in the art, as described herein.
High Throughput Screening to Identify Modulators
The assays to identify suitable modulators are amenable to high throughput screening. Preferred assays thus
detect enhancement or inhibition of cancer gene transcription, inhibition or enhancement of polypeptide expression, and
inhibition or enhancement of polypeptide activity.
In one embodiment, modulators evaluated in high throughput screening methods are proteins, often naturally
occurring proteins or fragments of naturally occurring proteins. Thus, cellular extracts containing proteins, or random or
directed digests of proteinaceous cellular extracts, are used. In this way, libraries of proteins are made for screening in the
methods of the invention. Particularly preferred in this embodiment are libraries of bacterial, fungal, viral, and mammalian
proteins, with the latter being preferred, and human proteins being especially preferred. Particularly useful test compound
will be directed to the class of proteins to which the target belongs, substrates for enzymes, or ligands and receptors.
Use of Soft Aaar Growth and Colony Formation to Identify and Characterize Modulators
Normal cells require a solid substrate to attach and grow. When cells are transformed, they lose this phenotype
and grow detached from the substrate. For example, transformed cells can grow in stirred suspension culture or suspended
in semi-solid media, such as semi-solid or soft agar. The transformed cells, when transfected with tumor suppressor genes,
can regenerate normal phenotype and once again require a solid substrate to attach to and grow. Soft agar growth or colony
formation in assays are used to identify modulators of cancer sequences, which when expressed in host cells, inhibit
abnormal cellular proliferation and transformation. A modulator reduces or eliminates the host cells' ability to grow
suspended in solid or semisolid media, such as agar.
Techniques for soft agar growth or colony formation in suspension assays are described in Freshney, Culture of
Animal Cells a Manual of Basic Technique (3rd ed., 1994). See also, the methods section of Garkavtsev et al. (1996), supra.
Evaluation of Contact Inhibition and Growth Density Limitation to Identify and Characterize Modulators
Normal cells typically grow in a flat and organized pattern in cell culture until they touch other cells. When the cells
touch one another, they are contact inhibited and stop growing. Transformed cells, however, are not contact inhibited and
0 continue to grow to high densities in disorganized foci. Thus, transformed cells grow to a higher saturation density than
corresponding normal cells. This is detected morphologically by the formation of a disoriented monolayer of cells or cells in
foci. Alternatively, labeling index with 3H)-thymidine at saturation density is used to measure density limitation of growth,
similarly an MTT or Alamar blue assay will reveal proliferation capacity of cells and the the ability of modulators to affect
same. See Freshney (1994), supra. Transformed cells, when transfected with tumor suppressor genes, can regenerate a
normal phenotype and become contact inhibited and would grow to a lower density.
In this assay, labeling index with 3H)-thymidine at saturation density is a preferred method of measuring density
limitation of growth. Transformed host cells are transfected with a cancer-associated sequence and are grown for 24 hours
at saturation density in non-limiting medium conditions. The percentage of cells labeling with 3H)-thymidine is determined by
C= incorporated cpm.
SContact independent growth is used to identify modulators of cancer sequences, which had led to abnormal cellular00 proliferation and transformation. A modulator reduces or eliminates contact independent growth, and returns the cells to a
normal phenotype.
Evaluation of Growth Factor or Serum Dependence to Identify and Characterize Modulators
Transformed cells have lower serum dependence than their normal counterparts (see, Temin, J. Natl. Cancer
Inst. 37:167-175 (1966); Eagle et al., J. Exp. Med 131:836-879 (1970)); Freshney, supra. This is in part due to release of
various growth factors by the transformed cells. The degree of growth factor or serum dependence of transformed host cells
can be compared with that of control. For example, growth factor or serum dependence of a cell is monitored in methods toidentify and characterize compounds that modulate cancer-associated sequences of the invention.
Use of Tumor-specific Marker Levels to Identify and Characterize Modulators
Tumor cells release an increased amount of certain factors (hereinafter "tumor specific markers") than their normal
counterparts. For example, plasminogen activator (PA) is released from human glioma at a higher level than from normal
brain cells (see, Gullino, Angiogenesis, Tumor Vascularization, and Potential Interference with Tumor Growth, in
Biological Responses in Cancer, pp. 178-184 (Mihich 1985)). Similarly, Tumor Angiogenesis Factor (TAF) is released
at a higher level in tumor cells than their normal counterparts. See, Folkman, Angiogenesis and Cancer, Sem Cancer
Biol. (1992)), while bFGF is released from endothelial tumors (Ensoli, B et al).
Various techniques which measure the release of these factors are described in Freshney (1994), supra. Also,see, Unkless et al., J. Biol. Chem. 249:4295-4305 (1974); Strickland Beers, J. Biol. Chem. 251:5694-5702 (1976); Whur et
al., Br. J. Cancer 42:305 312 (1980); Gullino, Angiogenesis, Tumor Vascularization, and Potential Interference with Tumor
Growth, in Biological Responses in Cancer, pp. 178-184 (Mihich 1985); Freshney, Anticancer Res. 5:111-130 (1985).
For example, tumor specific marker levels are monitored in methods to identify and characterize compounds that modulate
cancer-associated sequences of the invention.
Invasiveness into Matrinel to Idenlify and Characterize Modulators
The degree of invasiveness into Matrigel or an extracellular matrix constituent can be used as an assay to identifyand characterize compounds that modulate cancer associated sequences. Tumor cells exhibit a positive correlation betweenmalignancy and invasiveness of cells into Matrigel or some other extracellular matrix constituent. In this assay, tumorigeniccells are typically used as host cells. Expression of a tumor suppressor gene in these host cells would decrease
invasiveness of the host cells. Techniques described in Cancer Res. 1999; 59:6010; Freshney (1994), supra, can be used.Briefly, the level of invasion of host cells is measured by using filters coated with Matrigel or some other extracellular matrixconstituent. Penetration into the gel, or through to the distal side of the filler, is rated as invasiveness, and rated
histologically by number of cells and distance moved, or by prelabeling the cells with 125s and counting the radioactivity on
the distal side of the filter or bottom of the dish. See, Freshney (1984), supra.
00 Evaluation of Tumor Growth In Vivo to Identify and Characterize Modulators
SEffects of cancer-associated sequences on cell growth are tested in transgenic or immune-suppressed organisms.
Transgenic organisms are prepared in a variety of art-accepted ways. For example, knock-out transgenic organisms, e.g.,
mammals such as mice, are made, in which a cancer gene is disrupted or in which a cancer gene is inserted. Knock-out
transgenic mice are made by insertion of a marker gene or other heterologous gene into the endogenous cancer gene site in
the mouse genome via homologous recombination. Such mice can also be made by substituting the endogenous cancer
gene with a mutated version of the cancer gene, or by mutating the endogenous cancer gene, by exposure to
carcinogens.
To prepare transgenlc chimeric animals, mice, a DNA construct is introduced into the nuclei of embryonic
CK1 stem cells. Cells containing the newly engineered genetic lesion are injected into a host mouse embryo, which is re-
implanted into a recipient female. Some of these embryos develop into chimeric mice that possess germ cells some of which
00 are derived from the mutant cell line. Therefore, by breeding the chimeric mice it is possible to obtain a new line of mice
containing the introduced genetic lesion (see, Capecchi et al., Science 244:1288 (1989)). Chimeric mice can be derived
NC according to US Patent 6,365,797, issued 2 April 2002; US Patent 6,107,540 issued 22 August 2000; Hogan et al.,
Manipulating the Mouse Embryo: A laboratory Manual, Cold Spring Harbor Laboratory (1988) and Teratocarcinomas and
Embryonic Stem Cells: A Practical Approach, Robertson, ed., IRL Press, Washington, (1987).
Alternatively, various immune-suppressed or immune-deficient host animals can be used. For example, a
genetically athymic "nude" mouse (see, Giovanella et al., J. Natl. Cancer Inst. 52:921 (1974)), a SCID mouse, a
thymectornized mouse, or an irradiated mouse (see, Bradley et al., Br. J. Cancer 38:263 (1978); Selby et al., Br. J.
Cancer 41:52 (1980)) can be used as a host. Transplantable tumor cells (typically about 106 cells) injected into isogenic
hosts produce invasive tumors in a high proportion of cases, while normal cells of similar origin will not. In hosts which
developed invasive tumors, cells expressing cancer-associated sequences are injected subcutaneously or orthotopically.
Mice are then separated into groups, including control groups and treated experimental groups) e.g. treated with a
modulator). After a suitable length of time, preferably 4-8 weeks, tumor growth is measured by volume or by its two
largest dimensions, or weight) and compared to the control. Tumors that have statistically significant reduction (using, e.g.,
Student's T test) are said to have inhibited growth.
In Vitro Assays to Identify and Characterize Modulators
Assays to identify compounds with modulating activity can be performed in vitro. For example, a cancer
polypeptide is first contacted with a potential modulator and incubated for a suitable amount of time, from 0.5 to 48
hours. In one embodiment, the cancer polypeptide levels are determined in vitro by measuring the level of protein or mRNA.
The level of protein is measured using immunoassays such as Western blotting, ELISA and the like with an antibody that
selectively binds to the cancer polypeptide or a fragment thereof. For measurement of mRNA, amplification, using
PCR, LCR, or hybridization assays, e. Northern hybridization, RNAse protection, dot blotting, are preferred. The level of
protein or mRNA is detected using directly or indirectly labeled detection agents, fluorescently or radioactively labeled
nucleic acids, radioactively or enzymatically labeled antibodies, and the like, as described herein.
Alternatively, a reporter gene system can be devised using a cancer protein promoter operably linked to a reporter
gene such as luciferase, green fluorescent protein, CAT, or P-gal. The reporter construct is typically transfected into a cell.
After treatment with a potential modulator, the amount of reporter gene transcription, translation, or activity is measured
according to standard techniques known to those of skill In the art (Davis GF, supra; Gonzalez, J. Negulescu, P. Curr.
Opin. Biotechnol. 1998: 9:624).00 As outlined above, in vitro screens are done on individual genes and gene products. That Is, having identified a
Sparticular differentially expressed gene as important in a particular state, screening of modulators of the expression of the
gene or the gene product itself is performed.
In one embodiment, screening for modulators of expression of specific gene(s) is performed. Typically, the
expression of only one or a few genes is evaluated. In another embodiment, screens are designed to first find compoundsthat bind to differentially expressed proteins. These compounds are then evaluated for the ability to modulate differentially
expressed activity. Moreover, once initial candidate compounds are identified, variants can be further screened to better
evaluate structure activity relationships.
Binding Assays to Identify and Characterize Modulators
In binding assays in accordance with the invention, a purified or isolated gene product of the invention is generally
00 used. For example, antibodies are generated to a protein of the invention, and immunoassays are run to determine the
Samount andfor location of protein. Alternatively, cells comprising the cancer proteins are used in the assays.Thus, the methods comprise combining a cancer protein of the invention and a candidate compound such as a
ligand, and determining the binding of the compound to the cancer protein of the invention. Preferred embodiments utilize
the human cancer protein; animal models of human disease of can also be developed and used. Also, other analogous
mammalian proteins also can be used as appreciated by those of skill in the art. Moreover, in some embodiments variant or
derivative cancer proteins are used.
Generally, the cancer protein of the invention, or the ligand, is non-diffusibly bound to an insoluble support. The
support can, be one having isolated sample receiving areas (a microtiter plate, an array, etc.). The insoluble supports
can be made of any composition to which the compositions can be bound, is readily separated from soluble material, and isotherwise compatible with the overall method of screening. The surface of such supports can be solid or porous and of any
convenient shape.
Examples of suitable insoluble supports include microtiter plates, arrays, membranes and beads. These are
typically made of glass, plastic polystyrene), polysaccharide, nylon, nitrocellulose, or Teflon T etc. Microtiter plates
and arrays are especially convenient because a large number of assays can be carried out simultaneously, using small
amounts of reagents and samples. The particular manner of binding of the composition to the support is not crucial so longas it is compatible with the reagents and overall methods of the invention, maintains the activity of the composition and is
nondiffusable. Preferred methods of binding include the use of antibodies which do not sterically block either the ligandbinding site or activation sequence when attaching the protein to the support, direct binding to "sticky" or ionic supports,chemical crosslinking, the synthesis of the protein or agent on the surface, etc. Following binding of the protein or
ligand/binding agent to the support, excess unbound material is removed by washing. The sample receiving areas may thenbe blocked through incubation with bovine serum albumin (BSA), casein or other innocuous protein or other moiety.
Once a cancer protein of the invention is bound to the support, and a test compound Is added to the assay.Alternatively, the candidate binding agent is bound to the support and the cancer protein of the invention is then added.
Binding agents include specific antibodies, non-natural binding agents identified in screens of chemical libraries, peptideanalogs, etc.
Of particular interest are assays to identify agents that have a low toxicity for human cells. A wide variety of assayscan be used for this purpose, including proliferation assays, cAMP assays, labeled In vitro protein-protein binding assays,
electrophoretic mobility shift assays, immunoassays for protein binding, functional assays (phosphorylation assays, etc.) and
the like.
00 A determination of binding of the test compound (ligand, binding agent, modulator, etc.) to a cancer protein of the
S invention can be done in a number of ways. The test compound can be labeled, and binding determined directly, by
C attaching all or a portion of the cancer protein of the invention to a solid support, adding a labeled candidate compound
Ct a fluorescent label), washing off excess reagent, and determining whether the label is present on the solid support. Various
blocking and washing steps can be utilized as appropriate.
In certain embodiments, only one of the components is labeled, a protein of the invention or ligands labeled.
Alternatively, more than one component is labeled with different labels, 1125, for the proteins and a fluorophor for the
compound. Proximity reagents, quenching or energy transfer reagents are also useful.
Competitive Binding to Identify and Characterize Modulators
In one embodiment, the binding of the "test compound" is determined by competitive binding assay with a
C00 "competitor." The competitor is a binding moiety that binds to the target molecule a cancer protein of the invention).
Competitors include compounds such as antibodies, peptides, binding partners, ligands, etc. Under certain circumstances,
C<1 the competitive binding between the test compound and the competitor displaces the test compound. In one embodiment,
the test compound is labeled. Either the test compound, the competitor, or both, is added to the protein for a time sufficient
to allow binding. Incubations are performed at a temperature that facilitates optimal activity, typically between four and 400C.
Incubation periods are typically optimized, to facilitate rapid high throughput screening; typically between zero and one
hour will be sufficient. Excess reagent Is generally removed or washed away. The second component is then added, and
the presence or absence of the labeled component is followed, to indicate binding.
In one embodiment, the competitor is added first, followed by the test compound. Displacement of the competitor
is an indication that the test compound is binding to the cancer protein and thus is capable of binding to, and potentially
modulating, the activity of the cancer protein. In this embodiment, either component can be labeled. Thus, if the
competitor is labeled, the presence of label in the post-test compound wash solution indicates displacement by the test
compound. Alternatively, if the test compound is labeled, the presence of the label on the support indicates displacement.
In an alternative embodiment, the test compound is added first, with incubation and washing, followed by the
competitor. The absence of binding by the competitor indicates that the test compound binds to the cancer protein with
higher affinity than the competitor. Thus, if the test compound is labeled, the presence of the label on the support, coupled
with a lack of competitor binding, indicates that the test compound binds to and thus potentially modulates the cancer protein
of the invention.
Accordingly, the competitive binding methods comprise differential screening to identity agents that are capable of
modulating the activity of the cancer proteins of the invention. In this embodiment, the methods comprise combining a
cancer protein and a competitor in a first sample. A second sample comprises a test compound, the cancer protein, and a
competitor. The binding of the competitor is determined for both samples, and a change, or difference in binding between
the two samples indicates the presence of an agent capable of binding to the cancer protein and potentially modulating its
activity. That is, if the binding of the competitor is different in the second sample relative to the first sample, the agent is
capable of binding to the cancer protein.
Alternatively, differential screening is used to identify drug candidates that bind to the native cancer protein, but
cannot bind to modified cancer proteins. For example the structure of the cancer protein is modeled and used in rational
drug design to synthesize agents that interact with that site, agents which generally do not bind to site-modified proteins.
Moreover, such drug candidates that affect the activity of a native cancer protein are also identified by screening drugs for
the ability to either enhance or reduce the activity of such proteins.
0 Positive controls and negative controls can be used In the assays. Preferably control and test samples are
CN performed in at least triplicate to obtain statistically significant results. Incubation of all samples occurs for a time sufficient to
S allow for the binding of the agent to the protein. Following incubation, samples are washed free of non-specifically bound
material and the amount of bound, generally labeled agent determined. For example, where a radiolabel is employed, the
samples can be counted in a scintillation counter to determine the amount of bound compound.
LC= A variety of other reagents can be included in the screening assays. These include reagents like salts, neutral
proteins, e.g. albumin, detergents, etc. which are used to facilitate optimal protein-protein binding and/or reduce non-specific
or background interactions. Also reagents that otherwise improve the efficiency of the assay, such as protease Inhibitors,
nuclease inhibitors, anti-microbial agents, etc., can be used. The mixture of components is added in an order that provides
Cl for the requisite binding.
00 SUse of Polynucleotldes to Down-regulate or Inhibit a Protein of the Invention.
O Polynucleotide modulators of cancer can be introduced into a cell containing the target nuceotide sequence by
formation of a conjugate with a ligand-binding molecule, as described in WO 91/04753. Suitable ligand-binding molecules
include, but are not limited to, cell surface receptors, growth factors, other cytokines, or other ligands that bind to cell surface
receptors. Preferably, conjugation of the ligand binding molecule does not substantially interfere with the ability of the ligand
binding molecule to bind to its corresponding molecule or receptor, or block entry of the sense or antisense oligonucleotide
or its conjugated version into the cell. Alternatively, a polynucleotide modulator of cancer can be introduced into a cell
containing the target nucleic acid sequence, by formation of a polynucleotide-lipid complex, as described in WO
90/10448. It is understood that the use of antisense molecules or knock out and knock in models may also be used in
screening assays as discussed above, in addition to methods of treatment.
Inhibitory and Antisense Nucleotides
In certain embodiments, the activity of a cancer-associated protein is down-regulated, or entirely inhibited, by the
use of antisense polynucleotide or Inhibitory small nuclear RNA (snRNA), a nucleic acid complementary to, and which
can preferably hybridize specifically to, a coding mRNA nucleic acid sequence, a cancer protein of the invention, mRNA,
or a subsequence thereof. Binding of the antisense polynucleotide to the mRNA reduces the translation and/or stability of
the mRNA.
In the context of this invention, antisense polynucleotides can comprise naturally occurring nucleotides, or
synthetic species formed from naturally occurring subunits or their close homologs. Antisense polynucleotides may also
have altered sugar moieties or inter-sugar linkages. Exemplary among these are the phosphorothioate and other sulfur
containing species which are known for use in the art. Analogs are comprised by this invention so long as they function
effectively to hybridize with nucleotides of the invention. See, Isis Pharmaceuticals, Carlsbad, CA; Sequitor, Inc.,Natick, MA.
Such antisense polynucleotides can readily be synthesized using recombinant means, or can be synthesized invitro. Equipment for such synthesis is sold by several vendors, including Applied Biosystems. The preparation of otheroligonucleotides such as phosphorothioates and alkylated derivatives is also well known to those of skill in the art.
Antisense molecules as used herein include antisense or sense oligonudeotides. Sense oligonucleotides can,be employed to block transcription by binding to the anti-sense strand. The antisense and sense oligonucleotide
comprise a single stranded nucleic acid sequence (either RNA or DNA) capable of binding to target mRNA (sense) or DNA(antisense) sequences for cancer molecules. Antisense or sense oligonucleotides, according to the present invention,
comprise a fragment generally at least about 12 nucleotides, preferably from about 12 to 30 nucleotides. The ability to derive
an antisense or a sense oligonucleotide, based upon a cDNA sequence encoding a given protein is described in, Stein
00 &Cohen (Cancer Res. 48:2659 (1988 and van der Krol et al. (BioTechniques 6:958 (1988)).
Ribozvmesc In addition to antisense polynucleotides, ribozymes can be used to target and inhibit transcription of cancer-
associated nucleotide sequences. A ribozyme is an RNA molecule that catalytically cleaves other RNA molecules. Different
kinds of ribozymes have been described, including group I ribozymes, hammerhead ribozymes, hairpin ribozymes, RNase P,
and axhead ribozymes (see, Castanotto et al., Adv. In Pharmacology 25: 289-317 (1994) for a general review of the
properties of different ribozymes).
The general features of hairpin ribozymes are described, in Hampel et al., Nucl. Acids Res. 18:299-304
S (1990); European Patent Publication No. 0360257; U.S. Patent No. 5,254,678. Methods of preparing are well known to
CN those of skill in the art (see, WO 94/26877; Ojwang et al., Proc. Natl. Acad. Sci. USA 90:6340-6344 (1993); Yamada et
al., Human Gene Therapy 1:39-45 (1994); Leavitt et al., Proc. Natl. Acad Sci. USA 92:699- 703 (1995); Leavitt et al., Human
00 Gene Therapy 5: 1151-120 (1994); and Yamada et al., Virology 205: 121-126 (1994)).
0
CN Use of Modulators in Phenotypic Screening
In one embodiment, a test compound is administered to a population of cancer cells, which have an associated
cancer expression profile. By "administration" or "contacting" herein is meant that the modulator is added to the cells in such
a manner as to allow the modulator to act upon the cell, whether by uptake and intracellular action, or by action at the cell
surface. In some embodiments, a nucleic acid encoding a proteinaceous agent a peptide) is put into a viral construct
such as an adenoviral or retroviral construct, and added to the cell, such that expression of the peptide agent is
accomplished, PCT US97/01019. Regulatable gene therapy systems can also be used. Once the modulator has been
administered to the cells, the cells are washed if desired and are allowed to incubate under preferably physiological
conditions for some period. The cells are then harvested and a new gene expression profile is generated. Thus, e.g.,
cancer tissue is screened for agents that modulate, induce or suppress, the cancer phenotype. A change in at least
one gene, preferably many, of the expression profile indicates that the agent has an effect on cancer activity. Similarly,
altering a biological function or a signaling pathway is indicative of modulator activity. By defining such a signature for the
cancer phenotype, screens for new drugs that alter the phenotype are devised. With this approach, the drug target need not
be known and need not be represented in the original gene/protein expression screening platform, nor does the level of
transcript for the target protein need to change. The modulator inhibiting function will serve as a surrogate marker
As outlined above, screens are done to assess genes or gene products. That is, having identified a particular
differentially expressed gene as important in a particular state, screening of modulators of either the expression of the gene
or the gene product itself is performed.
Use of Modulators to Affect Peotides of the Invention
Measurements of cancer polypeptide activity, or of the cancer phenotype are performed using a variety of assays.
For example, the effects of modulators upon the function of a cancer polypeptide(s) are measured by examining parameters
described above. A physiological change that affects activity is used to assess the influence of a test compound on the
polypeptides of this invention. When the functional outcomes are determined using intact cells or animals, a variety of
effects can be assesses such as, in the case of a cancer associated with solid tumors, tumor growth, tumor metastasis,
neovascularization, hormone release, transcriptional changes to both known and uncharacterized genetic markers by
Northern blots), changes in cell metabolism such as cell growth or pH changes, and changes in intracellular second
messengers such as cGNIP.000O Methods of Identifying Characterizing Cancer-associated Sequences
Expression of various gene sequences is correlated with cancer. Accordingly, disorders based on mutant or
variant cancer genes are determined. In one embodiment, the invention provides methods for identifying cells containing
S variant cancer genes, determining the presence of, all or part, the sequence of at least one endogenous cancer gene in
Sa cell. This is accomplished using any number of sequencing techniques. The invention comprises methods of identifying
the cancer genotype of an individual, determining all or part of the sequence of at least one gene of the invention in the
individual. This is generally done in at least one tissue of the individual, a tissue set forth in Table I, and may include
the evaluation of a number of tissues or different samples of the same tissue. The method may include comparing the
CK1 sequence of the sequenced gene to a known cancer gene, a wild-type gene to determine the presence of family
Smembers, homologies, mutations or variants. The sequence of all or part of the gene can then be compared to the
00 sequence of a known cancer gene to determine if any differences exist. This is done using any number of known homology
programs, such as BLAST, Bestfit, etc. The presence of a difference in the sequence between the cancer gene of the
patient and the known cancer gene correlates with a disease state or a propensity for a disease state, as outlined herein.
In a preferred embodiment, the cancer genes are used as probes to determine the number of copies of the cancer
gene in the genome. The cancer genes are used as probes to determine the chromosomal localization of the cancer genes.
Information such as chromosomal localization finds use in providing a diagnosis or prognosis in particular when
chromosomal abnormalities such as translocations, and the like are identified in the cancer gene locus.
XIV.) KitslArticles of Manufacture
For use in the diagnostic and therapeutic applications described herein, kits are also within the scope of the
invention. Such kits can comprise a carrier, package, or container that is compartmentalized to receive one or more
containers such as vials, tubes, and the like, each of the container(s) comprising one of the separate elements to be used in
the method. For example, the container(s) can comprise a probe that is or can be detectably labeled. Such probe can be an
antibody or polynucleotide specific for a Figure 2-related protein or a Figure 2 gene or message, respectively. Where the
method utilizes nucleic acid hybridization to detect the target nucleic acid, the kit can also have containers containing
nucleotide(s) for amplification of the target nucleic acid sequence and/or a container comprising a reporter-means, such as a
biotin-binding protein, such as avidin or streptavidin, bound to a reporter molecule, such as an enzymatic, florescent, or
radioisotope label. The kit can include all or part of the amino acid sequences in Figure 2 or Figure 3 or analogs thereof, or a
nucleic acid molecules that encodes such amino acid sequences.
The kit of the invention will typically comprise the container described above and one or more other containers
comprising materials desirable from a commercial and user standpoint, including buffers, diluents, filters, needles, syringes;
carrier, package, container, vial and/or tube labels listing contents and/or instructions for use, and package inserts with instructions
for use.
A label can be present on the container to indicate that the composition is used for a specific therapy or non-therapeutic
application, such as a diagnostic or laboratory application, and can also indicate directions for either in vivo or in vitro use, such as
those described herein. Directions and or other information can also be included on an insert(s) or label(s) which is included with
or on the kit.
The terms "kit" and "article of manufacture" can be used as synonyms.
In another embodiment of the invention, an article(s) of manufacture containing compositions, such as amino acid
sequence(s), small molecule(s), nucleic acid sequence(s), and/or antibody(s), materials useful for the diagnosis,
00 prognosis, prophylaxis and/or treatment of neoplasias of tissues such as those set forth in Table I is provided. The article of
manufacture typically comprises at least one container and at least one label. Suitable containers include, for example,
C bottles, vials, syringes, and test tubes. The containers can be formed from a variety of materials such as glass or plastic.
The container can hold amino acid sequence(s), small molecule(s), nucleic acid sequence(s), and/or antibody(s), in one
embodiment the container holds a polynucleotide for use in examining the mRNA expression profile of a cell,, together with
reagents used for this purpose.cl The container can alternatively hold a composition which is effective for treating, diagnosis, prognosing or
prophylaxing a condition and can have a sterile access port (for example the container can be an intravenous solution bag or
S a vial having a stopper pierceable by a hypodermic injection needle). The active agents in the composition can be an
r antibody capable of specifically binding 191P4D12(b) and modulating the function of 191P4D12(b).
The label can be on or associated with the container. A label a can be on a container when letters, numbers or
c0 other characters forming the label are molded or etched into the container itself; a label can be associated with a container
when it is present within a receptacle or carrier that also holds the container, as a package insert. The label can
CN indicate that the composition is used for diagnosing, treating, prophylaxing or prognosing a condition, such as a neoplasia of
a tissue set forth in Table I. The article of manufacture can further comprise a second container comprising a
pharmaceutically-acceptable buffer, such as phosphate-buffered saline, Ringer's solution and/ordextrose solution. It can
further include other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters,
stirrers, needles, syringes, and/or package inserts with indications and/or instructions for use.
EXAMPLES:
Various aspects of the invention are further described and illustrated by way of the several examples that follow,
none of which are intended to limit the scope of the invention.
Example 1: SSH-Generated Isolation of cDNA Fragment of the 191P4D12(b) Gene
To isolate genes that are over-expressed in prostate cancer we used the Suppression Subtractive Hybridization (SSH)
procedure using cDNA derived from prostate cancer tissues. The 191P4D12(b) SSH cDNA sequence was derived from bladder
tumor minus cDNAs derived from a pool of 9 normal tissues. The 191P4D12(b) cDNA was identified as highly expressed in the
bladder cancer.
Materials and Methods
Human Tissues:
The patient cancer and normal tissues were purchased from different sources such as the NDRI (Philadelphia, PA).
mRNA for some normal tissues were purchased from Clontech, Palo Alto, CA.
RNA Isolation:
Tissues were homogenized in Trizol reagent (Life Technologies, Gibco BRL) using 10 ml/ g tissue isolate total RNA. Poly
A RNA was purified from total RNA using Qiagen's Oligotex mRNA Mini and Midi kits. Total and mRNA were quantified by
spectrophotometric analysis 260/280 nm) and analyzed by gel electrophoresis.
Oliqonucleotides:
The following HPLC purified oligonucleotides were used.
DPNCDN (cDNA synthesis primer):
5'TTTTGATCAAGCTT3o3' (SEQ ID NO: 48)
Adaptor 1:
S5'CTAATACGACTCACTATAGGGCTCGAGCGGCCGCCCGGGCAG3' (SEQ ID NO: 49)
(SEQ ID NO:
Adaptor 2:
5'GTAATACGACTCACTATAGGGCAGCGTGGTCGCGGCCGAG3' (SEQ ID NO: 51)
(SEQ ID NO: 52)
PCR primer 1:
5'CTAATACGACTCACTATAGGGC3' (SEQ ID NO: 53)
Nested primer (NP)1:
N 5'TCGAGCGGCCGCCCGGGCAGGA3' (SEQ ID NO: 54)
SNested primer (NP)2:00 5'AGCGTGGTCGCGGCCGAGGA3' (SEQ ID NO:
Suppression Subtractive Hybridization:
Suppression Subtractive Hybridization (SSH) was used to identify cDNAs corresponding to genes that may be
differentially expressed in bladder cancer. The SSH reaction utilized cDNA from bladder cancer and normal tissues.
The gene 191P4D12(b) sequence was derived from bladder cancer minus normal tissue cDNA subtraction. The SSH
DNA sequence (Figure 1) was identified.
The cDNA derived from of pool of normal tissues was used as the source of the "driver" cDNA, while the cDNA from
bladder cancer was used as the source of the "tester" cDNA. Double stranded cDNAs corresponding to tester and driver cDNAs
were synthesized from 2 pig of poly(A)* RNA isolated from the relevant xenograft tissue, as described above, using CLONTECH's
PCR-Select cDNA Subtraction Kit and 1 ng of oligonucleotide DPNCDN as primer. First- and second-strand synthesis were carried
out as described in the Kit's user manual protocol (CLONTECH Protocol No. PT1117-1, Catalog No. K1804-1). The resulting
cDNA was digested with Dpn II for 3 hrs at 370C. Digested cDNA was extracted with phenol/chloroform and ethanol
precipitated.
Driver cDNA was generated by combining in a 1:1 ratio Dpn II digested cDNA from the relevant tissue source (see
above) with a mix of digested cDNAs derived from the nine normal tissues: stomach, skeletal muscle, lung, brain, liver, kidney,
pancreas, small intestine, and heart.
Tester cDNA was generated by diluting 1 pd of Dpn II digested cDNA from the relevant tissue source (see above) (400
ng) in 5 pi of water. The diluted cDNA (2 pi, 160 ng) was then ligated to 2 pI of Adaptor 1 and Adaptor 2 (10 pM), in separate
ligation reactions, in a total volume of 10 pl at 160C overnight, using 400 u ofT4 DNA ligase (CLONTECH). Ugation was
terminated with 1 pl of 0.2 M EDTA and heating at 72oC for 5 min.
The first hybridization was performed by adding 1.5 pi (600 ng) of driver cDNA to each of two tubes containing 1.5 l
ng) Adaptor 1- and Adaptor 2- ligated tester cDNA. In a final volume of 4 pl, the samples were overlaid with mineral oil, denatured
in an MJ Research thermal cycler at 980C for 1.5 minutes, and then were allowed to hybridize for 8 hrs at 680C. The two
hybridizations were then mixed together with an additional 1 pi of fresh denatured driver cDNA and were allowed to hybridize
overnight at 68C0. The second hybridization was then diluted in 200 pl of 20 mM Hepes, pH 8.3, 50 mM NaCI, 0.2 mM EDTA,heated at 70C0 for 7 min. and stored at -200C.
PCR Amplification, Cloning and Sequencing of Gene Fragments Generated from SSH:
To amplify gene fragments resulting from SSH reactions, two PCR amplifications were performed. In the primary PCR
reaction 1 pl of the diluted final hybridization mix was added to 1 Ip of PCR primer 1 (10 pM), 0.5 pl dNTP mix (10 pM), 2.5 pi 10 x
00 reaction buffer (CLONTECH) and 0.5 pi 50 x Advantage cDNA polymerase Mix (CLONTECH) in a final volume of 25 pi. PCR 1O
was conducted using the following conditions: 75oC for 5 min., 940C for 25 sec., then 27 cycles of 94°C for 10 sec, 660C for 30 sec,
72oC for 1.5 min. Five separate primary PCR reactions were performed for each experiment. The products were pooled and
diluted 1:10 with water. For the secondary PCR reaction, 1 pl from the pooled and diluted primary PCR reaction was added to the
same reaction mix as used for PCR 1, except that primers NP1 and NP2 (10 pM) were used instead of PCR primer 1. PCR 2 was
performed using 10-12 cycles of 94oC for 10 sec, 680C for 30 sec, and 72oC for 1.5 minutes. The PCR products were analyzed
using 2% agarose gel electrophoresis.
The PCR products were inserted into pCR2.1 using the T/A vector cloning kit (Invitrogen). Transformed E. coli were
subjected to blue/white and ampicillin selection. White colonies were picked and arrayed into 96 well plates and were grown in
liquid culture overnight. To identify inserts, PCR amplification was performed on 1 pl of bacterial culture using the conditions of
PCR1 and NP1 and NP2 as primers. PCR products were analyzed using 2% agarose gel electrophoresis.
00 Bacterial clones were stored in 20% glycerol in a 96 well format. Plasmid DNA was prepared, sequenced, and subjected
to nucleic acid homology searches of the GenBank, dBest, and NCI-CGAP databases.
SRT-PCR Expression Analysis:
First strand cDNAs can be generated from 1 pg of mRNA with oligo (dT)12-18 priming using the Gibco-BRL Superscript
Preamplification system. The manufacturers protocol was used which included an incubation for 50 min at 420C with reverse
transcriptase followed by RNAse H treatment at 370C for 20 min. After completing the reaction, the volume can be increased to
200 pl with water prior to normalization. First strand cDNAs from 16 different normal human tissues can be obtained from
Clontech.
Normalization of the first strand cDNAs from multiple tissues was performed by using the primers
5'atatcgccgcgctcgtcgtcgacaa3' (SEQ ID NO: 56) and 5'agccacacgcagctcattgtagaagg 3' (SEQ ID NO: 57) to amplify p-actin. First
strand cDNA (5 pi) were amplified In a total volume of 50 pC containing 0.4 pM primers, 0.2 pM each dNTPs, 1XPCR buffer
(Clontech, 10 mM Tris-HCL, 1.5 mM MgCI2, 50 mM KCI, pH8.3) and 1X Klentaq DNA polymerase (Clontech). Five pl of the PCR
reaction can be removed at 18, 20, and 22 cycles and used for agarose gel electrophoresis. PCR was performed using an MJ
Research thermal cycler under the following conditions: Initial denaturation can be at 94oC for 15 sec, followed by a 18, 20, and 22
cycles of 94oC for 15, 650C for 2 min, 720C for 5 sec. A final extension at 72oC was carried out for 2 min. After agarose gel
electrophoresis, the band intensities of the 283 b.p. p-actin bands from multiple tissues were compared by visual inspection.
Dilution factors for the first strand cDNAs were calculated to result in equal p-actin band intensities in all tissues after 22 cycles of
PCR. Three rounds of normalization can be required to achieve equal band intensities in all tissues after 22 cycles of PCR.
To determine expression levels of the 191P4D12(b) gene, 5 pl of normalized first strand cDNA were analyzed by PCR
using 26, and 30 cycles of amplification. Semi-quantitative expression analysis can be achieved by comparing the PCR products
at cycle numbers that give light band intensities. The primers used for RT-PCR were designed using the 191P4D12(b) SSH
sequence and are listed below:
191P4D12(b).1GGCTGGAGTTCAATGAGGTTTATTT 3' (SEQ ID NO: 58)
191P4D12(b).2TCCAGCAGATTTCAGACTAAAAGAAGA- 3' (SEQ ID NO: 59)
A typical RT-PCR expression analysis is shown in Figure 14. First strand cDNA was prepared from vital pool 1 (liver, lung
00 and kidney), vital pool 2 (pancreas, colon and stomach), normal kidney, prostate cancer pool, bladder cancer pool, colon cancer pool,
lung cancer pool, breast cancer pool and cancer metastasis pool. Normalization was performed by PCR using primers to actin and
ri GAPDH. Semi-quantitative PCR, using primers to 191P4D12(b), was performed at 26 and 30 cycles of amplification. Results show
strong expression of 191P4D12(b) in bladder cancer pool. Expression of 191P4D12(b) was also detected in prostate cancer pool,
colon cancer pool, lung cancer pool, breast cancer pool and cancer metastasis pool but very weakly in vital pool 1 and vital pool 2.
Example 2: Isolation of Full Length 191P4D12(b) Encoding cDNA
The 191P4D12(b) SSH cDNA sequence was derived from a subtraction consisting of bladder cancer minus a mixture of
9 normal tissues: stomach, skeletal muscle, lung, brain, liver, kidney, pancreas, small intestine and heart. The SSH cDNA
C sequence of 223 bp (Figure 1) was designated 191P4D12(b).
O 191P4D12(b) v.1 (clone 1Al) of 3464 bp was cloned from bladder cancer cDNA library, revealing an ORF of 510 amino
00 acids (Figure 2 and Figure Other variants of 191P4D12(b) were also identified and these are listed in Figures 2 and 3,
191P4D12(b) v.1, v.2, v.10, v.11, and v.12 proteins are 510 amino acids in length and differ from each other by one
amino acid as shown in Figure 11. 191P4D12(b) v.3, v.4, v.5, and v.8 code for the same protein as 191P4D12(b) v.1.
191P4D12(b) v.6 and v.7 are splice variants and code for proteins of 295 and 485 amino acids, respectively. 191P4D12(b) v.13
clone 9C was cloned from bladder cancer cDNA and has one amino acid insertion at position 334 compared to 191P4D12(b) v.1.
191P4D12(b) v.9 clone BCP1 is a splice variant of 191P4D12(b) v.1 and was cloned from a bladder cancer cDNA library.
191P4D12(b) v.14 is a SNP variant and differs from 191P4D12(b) v.9 by one amino acid as shown in Figure 2.
191P4D12(b) v.1 shows 99% identity over 2744 to the Ig superfamily receptor LNIR (nectin-4), accession number
NM_030916. 191P4D12(b) v.9 protein is 100% identical to clone AF218028 with function of inhibiting cancer cell growth.
Example 3: Chromosomal Mapping of 191P4D12(b)
Chromosomal localization can implicate genes in disease pathogenesis. Several chromosome mapping approaches are
available including fluorescent in situ hybridization (FISH), human/hamster radiation hybrid (RH) panels (Walter et al., 1994;
Nature Genetics 7:22; Research Genetics, Huntsville Al), human-rodent somatic cell hybrid panels such as is available from the
Comell Institute (Camden, New Jersey), and genomic viewers utilizing BLAST homologies to sequenced and mapped genomic
clones (NCBI, Bethesda, Maryland).
191P4D12(b) maps to chromosome 1q22-q23.2 using 191P4D12(b) sequence and the NCBI BLAST tool located on the World
Wide Web at (.ncbi.nlm.nih.gov/genomelseq/page.cgi?F=HsBlast.html&&ORG=Hs).
Example 4: Expression Analysis of 191P4D12(b) In Normal Tissues and Patient Specimens
Expression analysis by RT-PCR demonstrated that 191P4D12(b) is strongly expressed in bladder cancer patient
specimens (Figure 14). First strand cDNA was prepared from vital pool 1 (liver, lung and kidney), vital pool 2 (pancreas,
colon and stomach), normal kidney, prostate cancer pool, bladder cancer pool, colon cancer pool, lung cancer pool, breast
cancer pool and cancer metastasis pool; prostate cancer metastasis to lymph node, prostate cancer pool, bladder cancer
pool, kidney cancer pool, colon cancer pool, lung cancer pool, ovary cancer pool, breast cancer pool, cancer metastasis
pool, pancreas cancer pool, and LAPC prostate xenograft pool. Normalization was performed by PCR using primers to actin
and GAPDH. Semi-quantitative PCR, using primers to 191P4D12(b), was performed at 26 and 30 cycles of amplification. In
results show strong expression of 191P4D12(b) in bladder cancer pool. Expression of 191P4D12(b) was also detected
in prostate cancer pool, colon cancer pool, lung cancer pool, breast cancer pool and cancer metastasis pool but very weakly
In vital pool 1 and vital pool 2. In results show strong expression of 191P4D12(b) in prostate, bladder, kidney, colon,
lung, ovary, breast, cancer metastasis, and pancreas cancer specimens.
00 Northern blot analysis of 251 P5G2 is a technique known to those skilled in the art to detect 251 P5G2 protein
C production. Northern blotting detects relative levels of mRNA expressed from a 251 P5G2 gene. Specific mRNA is
Smeasured using a nucleic acid hybridization technique and the signal is detected on an autoradiogram. The stronger the
C signal, the more abundant is the mRNA. For 251 P5G2 genes that produce mRNA that contains an open reading frame
S flanked by a good Kozak translation initiation site and a stop codon, in the vast majority of cases the synthesized mRNA is
expressed as a protein.
The level of expression of the 251P5G2 gene is determined in various normal tissues and in various tumor tissues
and tumor cell lines using the technique of Northern blotting, which detects production of messenger RNA. It is well known in1 the art that the production of messenger RNA, that encodes the protein, is a necessary step in the production of the protein
ri itself. Thus, detection of high levels of messenger RNA by, for example, Northern blot, is a way of determining that the
protein itself is produced. The Northern blot technique is used as a routine procedure because it does not require the time
00 delays (as compared to Western blotting, immunoblotting or immunohistochemistry) involved in isolating or synthesizing the
Sprotein, preparing an immunological composition of the protein, eliciting a humoral immune response, harvesting the
Cr antibodies, and verifying the specificity thereof.
The Kozak consensus sequence for translation initiation CCACCATGG, where the ATG start codon is noted, is the
sequence with the highest established probability of initiating translation. This was confirmed by Peri and Pandey Trends in
Genetics (2001) 17: 685-687. The conclusion is consistent with the general knowledge in the art that, with rare exceptions,
expression of an mRNA is predictive of expression of its encoded protein. This is particularly true for mRNA with an open
reading frame and a Kozak consensus sequence for translation initiation.
It is understood in the art that the absolute levels of messenger RNA present and the amounts of protein produced
do not always provide a 1:1 correlation. In those instances where the Northern blot has shown mRNA to be present, it is
almost always possible to detect the presence of the corresponding protein in the tissue which provided a positive result in
the Northern blot. The levels of the protein compared to the levels of the mRNA may be differential, but generally, cells that
exhibit detectable mRNA also exhibit detectable corresponding protein and vice versa. This is particularly true where the
mRNA has an open reading frame and a good Kozak sequence (See, Peri and Pandey, supra.).
Occasionally those skilled in the art encounter a rare occurrence where there is no detectable protein in the
presence of corresponding mRNA. (See, Fu, L, et al., Embo. Journal, 15:4392-4401 (1996)). In many cases, a reported
lack of protein expression is due to technical limitations of the protein detection assay. These limitations are readily known to
those skilled in the art. These limitations include but are not limited to, available antibodies that only detect denatured
protein and not native protein present in a cell and unstable proteins with very short half-life. Short-lived proteins are still
functional and have been previously described to induce tumor formation. (See, Reinstein, et al., Oncogene, 19: 5944-
5950). In such situations, when more sensitive detection techniques are performed and/or other antibodies are generated,
protein expression Is detected. When studies fail to take these principles into account, they are likely to report artifactually
lowered correlations of mRNA to protein. Outside of these rare exceptions the use of Northern blot analysis is recognized to
those skilled in the art to be predictive and indicative of the detection of 251 P5G2 protein production.
Extensive expression of 191P4D12(b) in normal tissues is shown in Figure 15. Two multiple tissue northern blots
(Clontech) both with 2 ug of mRNAnane were probed with the 191P4D12(b) sequence. Size standards in kilobases (kb) are
indicated on the side. Results show expression of an approximately 4kb transcript in placenta and very weakly in prostate
but not in any other normal tissue tested. A smaller 191P4D12(b) transcript of approximately 2.5kb was detected in heart
and skeletal muscle.
Expression of 191P4D12(b) in bladder cancer patient specimens and human normal tissues is shown In Figure 16.
RNA was extracted from a pool of 3 bladder cancer patent specimens, as well as from normal prostate normal bladder
O normal kidney normal colon normal lung normal breast (NBr), normal ovary and normal
0 pancreas (NPa). Northern blot with 10 ug of total RNAlane was probed with 191P4D12(b) SSH sequence. Size standards
in kilobases (kb) are indicated on the side. The 191P4D12(b) transcript was detected in the bladder cancer specimens, but
not in the normal tissues tested.
Analysis of individual bladder cancer patient specimens Is depicted in Figure 17. RNA was extracted from bladder
cancer cell lines normal bladder and bladder cancer patient tumors Northern blots with 10 ug of total RNA
were probed with the 191P4D12(b) SSH fragment. Size standards in kilobases are on the side. Results show expression of
the approximately 4kb 191P4D12(b) transcript in the bladder tumor tissues but not in normal bladder. A smaller transcript
was detected in the HT1197 cell line but not in the other cancer cell lines tested.
t^ Expression of 191P4D12(b) was also detected in prostate cancer xenograft tissues (Figure 18). RNA was
extracted from normal prostate, and from the prostate cancer xenografts LAPC-4AD, LAPC-4AI, LAPC-9AD, and LAPC-9AI.
00 Northern blots with 10 ug of total RNA were probed with the 191P4D12(b) SSH fragment. Size standards In kilobases are on
the side. Results show expression of the approximately 4kb 191P4D12(b) transcript in all the LAPC xenograft tissues but not
in normal prostate.
Figure 19 shows expression of 191P4D12(b) In cervical cancer patient specimens. RNA was extracted from
normal cervix, Hela cancer cell line, and 3 cervix cancer patient tumors Northern blots with 10 ug of total RNA were
probed with the 191P4D12(b) SSH fragment. Size standards in kilobases are on the side. Results show expression of the
approximately 4kb 191P4D12(b) transcript in 2 out of 3 cervix tumors tested but not in normal cervix nor in the Hela cell line.
191P4D12(b) was also expressed in lung cancer patient specimens (Figure 20). RNA was extracted from lung
cancer cell lines normal lung bladder cancer patient tumors and normal adjacent tissue (Nat). Northem blots
with 10 ug of total RNA were probed with the 191P4D12(b). Size standards in kilobases are on the side. Results show
expression of the approximately 4kb 191P4D12(b) transcript in the lung tumor tissues but not in normal lung nor in the cell
lines tested.
191P4D12(b) expression was tested in a panel of individual patient cancer specimens (Figure 21). First strand
cDNA was prepared from a panel of lung cancer specimens bladder cancer specimens prostate cancer specimens
colon cancer specimens uterus cancer specimens and cervix cancer specimens Normalization was
performed by PCR using primers to actin. Semi-quantitative PCR, using primers to 191P4D12(b) SSH fragment, was
performed at 26 and 30 cycles of amplification. Expression level was recorded as 0 no expression detected; 1 weak
expression, 2 moderate expression; 3 strong expression. Results show expression of 191P4D12(b) in 97% of the 31
lung cancer patient specimens tested, 94% of 18 bladder cancer patient specimens, 100% of 20 prostate cancer patient
specimens, 100% of 22 colon cancer patient specimens, 100% of 12 uterus cancer patient specimens, and 100% of 14
cervix cancer patient specimens tested.
The restricted expression of 191P4D12(b) in normal tissues and the expression detected in cancer patient
specimens suggest that 191P4D12(b) is a potential therapeutic target and a diagnostic marker for human cancers.
Example 5: Transcript Variants of 191P4D12(b)
Transcript variants are variants of mature mRNA from the same gene which arise by alternative transcription or
altemative splicing. Alternative transcripts are transcripts from the same gene but start transcription at different points. Splice
variants are mRNA variants spliced differently from the same transcript. In eukaryotes, when a multi-exon gene is
transcribed from genomic DNA, the initial RNA Is spliced to produce functional mRNA, which has only exons and is used for
translation into an amino acid sequence. Accordingly, a given gene can have zero to many alternative transcripts and each
transcript can have zero to many splice variants. Each transcript variant has a unique exon makeup, and can have different
00 coding and/or non-coding or 3' end) portions, from the original transcript. Transcript variants can code for similar or
S different proteins with the same or a similar function or can encode proteins with different functions, and can be expressed in
CN the same tissue at the same time, or in different tissues at the same time, or in the same tissue at different times, or in
different tissues at different times. Proteins encoded by transcript variants can have similar or different cellular or
S extracellular localizations, secreted versus Intracellular.
STranscript variants are identified by a variety of art-accepted methods. For example, alternative transcripts and
splice variants are identified by full-length cloning experiment, or by use of full-length transcript and EST sequences. First,
all human ESTs were grouped into clusters which show direct or Indirect identity with each other. Second, ESTs in the same
cluster were further grouped into sub-clusters and assembled into a consensus sequence. The original gene sequence is
C1 compared to the consensus sequence(s) or other full-length sequences. Each consensus sequence is a potential splice
variant for that gene. Even when a variant is identified that is not a full-length clone, that portion of the variant is very useful
C for antigen generation and for further cloning of the full-length splice variant, using techniques known in the art.00
SMoreover, computer programs are available in the art that identify transcript variants based on genomic
sequences. Genomic-based transcript variant identification programs include FgenesH Salamov and V. Solovyev, "Ab
initio gene finding in Drosophila genomic DNA," Genome Research. 2000 April;10(4):516-22); Grail (URL
compbio.ornl.gov/Grail-bin/EmptyGrailForm) and GenScan (URL genes.mit.edu/GENSCAN.html). For a general discussion
of splice variant identification protocols see., Southan, A genomic perspective on human proteases, FEBS Lett.
2001 Jun 8; 498(2-3):214-8; de Souza, et al., Identification of human chromosome 22 transcribed sequences with ORF
expressed sequence tags, Proc. Natl Acad Sci U S A. 2000 Nov 7; 97(23):12690-3.
To further confirm the parameters of a transcript variant, a variety of techniques are available in the art, such as
full-length cloning, proteomic validation, PCR-based validation, and 5' RACE validation, etc. (see Proteomic Validation:
Brennan, et al., Albumin banks peninsula: a new termination variant characterized by electrospray mass spectrometry,
Biochem Biophys Acta. 1999 Aug 17;1433(1-2):321-6; Ferranti P, et al., Differential splicing of pre-messenger RNA produces
multiple forms of mature caprine alpha(sl)-casein, Eur J Biochem. 1997 Oct 1;249(1):1-7. For PCR-based Validation:
Wellmann S, et Specific reverse transcription-PCR quantification of vascular endothelial growth factor (VEGF) splice
variants by LightCycler technology, Clin Chem. 2001 Apr,47(4):654-60; Jia, et al., Discovery of new human beta-
defensins using a genomics-based approach, Gene. 2001 Jan 24; 263(1-2):211-8. For PCR-based and 5' RACE Validation:
Brigle, et al., Organization of the murine reduced folate carrier gene and identification of variant splice forms, Biochem
Biophys Acta. 1997 Aug 7; 1353(2): 191-8).
It is known in the art that genomic regions are modulated in cancers. When the genomic region to which a gene
maps is modulated in a particular cancer, the alternative transcripts or splice variants of the gene are modulated as well.
Disclosed herein is that 191P4D12(b) has a particular expression profile related to cancer. Alternative transcripts and splice
variants of 191P4D12(b) may also be involved in cancers in the same or different tissues, thus serving as tumor-associated
markers/antigens.
Using the full-length gene and EST sequences, four additional transcript variants were identified, designated as
191P4D12(b) v.6, v.7, v.8 and v.9 as shown in Figure 12. The boundaries of exons in the original transcript, 191P4D12(b) v.1
were shown in Table LI. Compared with 191P4D12(b) v.1, variant v.6 spliced out 202-321 from the first exon of v.1 while
variant v.8 spliced out 63 bases from the last exon of v.1. Variant v.7 spliced out exon 8 of v.1. Variant 9 was part of the last
exon of v.1. Theoretically, each different combination of exons in spatial order, e.g. exons 2, 3, 5, 7 and 9 of v.1, is a
potential splice variant.
Tables LlI through LV are set forth on a variant-by-variant bases. Tables LII shows nucleotide
sequence of the transcript variants. Tables LIII shows the alignment of the transcript variant with nucleic acidOO0 sequence of 191P4D12(b) v.l. Tables LIV lays out amino acid translation of the transcript variant for the identified
i reading frame orientation. Tables LV displays alignments of the amino acid sequence encoded by the splice variant
with that of 191P4D12(b) v.1.
Example 6: Single Nucleotide Polymorphisms of 191P4D12(b)
C A Single Nucleotide Polymorphism (SNP) is a single base pair variation in a nucleotide sequence at a specific
location. At any given point of the genome, there are four possible nucleotide base pairs: A/T, C/G, G/C and T/A. Genotype
refers to the specific base pair sequence of one or more locations in the genome of an individual. Haplotype refers to the
base pair sequence of more than one location on the same DNA molecule (or the same chromosome in higher organisms),
CN often in the context of one gene or in the context of several tightly linked genes. SNP that occurs on a cDNA Is called cSNP.
This cSNP may change amino acids of the protein encoded by the gene and thus change the functions of the protein. Some
o SNP cause inherited diseases; others contribute to quantitative variations In phenotype and reactions to environmental
S factors including diet and drugs among individuals. Therefore, SNP and/or combinations of alleles (called haplotypes) have
many applications, including diagnosis of inherited diseases, determination of drug reactions and dosage, identification of
genes responsible for diseases, and analysis of the genetic relationship between individuals Nowotny, J. M. Kwon and A.
M. Goate, "SNP analysis to dissect human traits," Curr. Opin. Neurobiol. 2001 Oct; 11(5):637-641; M. Pirmohamed and B. K.
Park, "Genetic susceptibility to adverse drug reactions," Trends Pharmacol. Sci. 2001 Jun; 22(6):298-305; J. H. Riley, C. J.
Allan, E. Lai and A. Roses, "The use of single nucleotide polymorphisms in the isolation of common disease genes,"
Pharmacogenomics. 2000 Feb; 1(1):39-47; R. Judson, J. C. Stephens and A. Windemuth, "The predictive power of
haplotypes in clinical response," Pharmacogenomics. 2000 feb; 1(1):15-26).
SNP are identified by a variety of art-accepted methods Bean, "The promising voyage of SNP target discovery,"
Am. Clin. Lab. 2001 Oct-Nov; 20(9):18-20; K. M. Weiss, "In search of human variation," Genome Res. 1998 Jul; 8(7):691-
697; M. M. She, "Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping
technologies," Clin. Chem. 2001 Feb; 47(2):164-172). For example, SNP can be identified by sequencing DNA fragments
that show polymorphism by gel-based methods such as restriction fragment length polymorphism (RFLP) and denaturing
gradient gel electrophoresis (DGGE). They can also be discovered by direct sequencing of DNA samples pooled from
different individuals or by comparing sequences from different DNA samples. With the rapid accumulation of sequence data
in public and private databases, one can discover SNP by comparing sequences using computer programs Gu, L. Hillier
and P. Y. Kwok, "Single nucleotide polymorphism hunting in cyberspace," Hum. Mutat. 1998; 12(4):221-225). SNP can be
verified and genotype or haplotype of an individual can be determined by a variety of methods including direct sequencing
and high throughput microarrays Y. Kwok, "Methods for genotyping single nucleotide polymorphisms," Annu. Rev.
Genomics Hum. Genet. 2001; 2:235-258; M. Kokoris, K. Dix, K. Moynihan, J. Mathis, B. Erwin, P. Grass, B. Hines and A.
Duesterhoeft, "High-throughput SNP genotyping with the Masscode system," Mol. Diagn. 2000 Dec; 5(4):329-340).
Using the methods described above, seven SNP and one insertion/deletion of three bases were identified in the original
transcript, 191P4D12(b) v.1, at positions 420 2184 2341 2688 367 699 1590
and insertion of GCA in between 1262 and 12631. The transcripts or proteins with alternative allele were designated as
variant 191P4D12(b) v.2 through v.5 and v.10 through v.13, as shown in Figure 10. Figure 11 shows the schematic
alignment of protein variants, corresponding to nucleotide variants. Nucleotide variants that code for the same amino acid
sequence as v.1 are not shown in Figure 11. These alleles of the SNP, though shown separately here, can occur in different
combinations (haplotypes) and in any one of the transcript variants (such as 191P4D12(b) v.9) that contains the site of the
SNP. The SNP at 2688 of v.1 occurs also in transcript variant v.9 and contributed to one codon change of v.9 at amino acid
64 from Ala to Asp (Figure 11).
000 Example 7: Production of Recombinant 191P4D12(b) in Prokarvotic Systems
C To express recombinant 191P4D12(b) and 191P4D12(b) variants in prokaryotic cells, the full or partial length
191P4D12(b) and 191 P4D12(b) variant cDNA sequences are cloned into any one of a variety of expression vectors known in
the art. One or more of the following regions of 191P4D12(b) variants are expressed: the full length sequence presented in
Figures 2 and 3, or any 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more
Cr contiguous amino acids from 191P4D12(b), variants, or analogs thereof.
A. In vitro transcription and translation constructs:
pDRII: To generate 191P4D12(b) sense and anti-sense RNA probes for RNA in situ investigations, pCRII
Ci constructs (Invitrogen, Carlsbad CA) are generated encoding either all or fragments of the 191P4D12(b) cDNA. The pCRII
vector has Sp6 and T7 promoters flanking the insert to drive the transcription of 191P4D12(b) RNA for use as probes in RNA
C in situ hybridization experiments. These probes are used to analyze the cell and tissue expression of 191 P4D12(b) at the00
RNA level. Transcribed 191P4D12(b) RNA representing the cDNA amino acid coding region of the 191P4012(b) gene is
used in in vitro translation systems such as the TnTTM Coupled Reticulolysate System (Promega, Corp., Madison, WI) to
synthesize 191 P4D12(b) protein.
B. Bacterial Constructs:
pGEX Constructs: To generate recombinant 191P4D12(b) proteins in bacteria that are fused to the Glutathione S-
transferase (GST) protein, all or parts of the 191P4D12(b) cDNA protein coding sequence are cloned into the pGEX family of
GST-fusion vectors (Amersham Pharmacia Biotech, Piscataway, NJ). These constructs allow controlled expression of
recombinant 191P4D12(b) protein sequences with GST fused at the amino-terminus and a six histidine epitope (6X His) at
the carboxyl-lerminus. The GST and 6X His tags permit purification of the recombinant fusion protein from induced bacteria
with the appropriate affinity matrix and allow recognition of the fusion protein with anti-GST and anti-His antibodies. The 6X
His tag is generated by adding 6 histidine codons to the cloning primer at the 3' end, of the open reading frame (ORF).
A proteolytic cleavage site, such as the PreScissionTM recognition site in pGEX-6P-1, may be employed such that it permits
cleavage of the GST tag from 191P4D12(b)-related protein. The ampicillin resistance gene and pBR322 origin permits
selection and maintenance of the pGEX plasmids in E. coli.
pMAL Constructs: To generate, in bacteria, recombinant 191P4D12(b) proteins that are fused to maltose-binding
protein (MBP), all or parts of the 191P4D12(b) cDNA protein coding sequence are fused to the MBP gene by cloning into the
pMAL-c2X and pMAL-p2X vectors (New England Biolabs, Beverly, MA). These constructs allow controlled expression of
recombinant 191P4D12(b) protein sequences with MBP fused at the amino-terminus and a 6X His epitope tag at the
carboxyl-terminus. The MBP and 6X His tags permit purification of the recombinant protein from induced bacteria with the
appropriate affinity matrix and allow recognition of the fusion protein with anti-MBP and anti-His antibodies. The 6X His
epitope tag is generated by adding 6 histidine codons to the 3' cloning primer. A Factor Xa recognition site permits cleavage
of the pMAL tag from 191P4D12(b). The pMAL-c2X and pMAL-p2X vectors are optimized to express the recombinant
protein in the cytoplasm or periplasm respectively. Periplasm expression enhances folding of proteins with disulfide bonds.
pET Constructs: To express 191P4D12(b) in bacterial cells, all or parts of the 191P4D12(b) cDNA protein coding
sequence are cloned into the pET family of vectors (Novagen, Madison, WI). These vectors allow tightly controlled
expression of recombinant 191P4D12(b) protein in bacteria with and without fusion to proteins that enhance solubility, such
as NusA and thioredoxin (Trx), and epitope tags, such as 6X His and S-Tag TM that aid purification and detection of the
recombinant protein. For example, constructs are made utilizing pET NusA fusion system 43.1 such that regions of the
191P4D12(b) protein are expressed as amino-terminal fusions to NusA.00
C. Yeast Constructs:
pESC Constructs: To express 191P4D12(b) in the yeast species Saccharomyces cerevlsiae for generation of
recombinant protein and functional studies, all or parts of the 191P4D12(b) cDNA protein coding sequence are cloned into
the pESC family of vectors each of which contain 1 of 4 selectable markers, HIS3, TRP1, LEU2, and URA3 (Stratagene, La
Jolla, CA). These vectors allow controlled expression from the same plasmid of up to 2 different genes or cloned sequences
containing either FlagTM or Myc epitope tags in the same yeast cell. This system is useful to confirm protein-protein
interactions of 191P4D12(b). In addition, expression in yeast yields similar post-translational modifications, such as
S glycosylations and phosphorylations, that are found when expressed in eukaryotic cells.
pESP Constructs: To express 191P4D12(b) in the yeast species Saccharomyces pombe, all or parts of the 191P4D12(b)
cDNA protein coding sequence are cloned into the pESP family of vectors. These vectors allow controlled high level of
expression of a 191P4D12(b) protein sequence that is fused at either the amino terminus or at the carboxyl terminus to GST
00 which aids purification of the recombinant protein. A FlagT epitope tag allows detection of the recombinant protein with anti-
SFlagTM antibody.
Example 8: Production of Recombinant 191P4D12(b) in Higher Eukaryotic Systems
A. Mammalian Constructs:
To express recombinant 191P4D12(b) in eukaryotic cells, the full or partial length 191P4012(b) cDNA sequences
can be cloned into any one of a variety of expression vectors known in the art. One or more of the following regions of
S191P4D12(b) are expressed in these constructs, amino adds 1 to 510, or any 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more contiguous amino acids from 191P4D12(b) v.1, v.2, v.10, v.11, v.12; amino
acids 1 to 511, or any 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30 or more
contiguous amino acids from 191P4D12(b) v.13, variants, or analogs thereof.
The constructs can be transfected into any one of a wide variety of mammalian cells such as 293T cells.
Transfected 293T cell lysates can be probed with the anti-191P4D12(b) polyclonal serum, described herein.
pcDNA4/HisMax Constructs: To express 191P4D12(b) in mammalian cells, a 191P4D12(b) ORF, or portions
thereof, of 191P4D12(b) were cloned into pcDNA4/HisMax Version A (Invitrogen, Carlsbad, CA). Protein expression is
driven from the cytomegalovirus (CMV) promoter and the SP16 translational enhancer. The recombinant protein has
XpressTM and six histidine (6X His) epitopes fused to the amino-terminus. The pcDNA4/HisMax vector also contains the
bovine growth hormone (BGH) polyadenylation signal and transcription termination sequence to enhance mRNA stability
along with the SV40 origin for episomal replication and simple vector rescue in cell lines expressing the large T antigen. The
Zeocin resistance gene allows for selection of mammalian cells expressing the protein and the ampicillin resistance gene and
ColE1 origin permits selection and maintenance of the plasmid in E. coli.
pcDNA3.11MycHis Constructs: To express 191P4D12(b) in mammalian cells, a 191P4D12(b) ORF, or portions
thereof, of 191 P4D12(b) with a consensus Kozak translation initiation site was cloned into pcDNA3.1/MycHis Version A
(Invitrogen, Carlsbad, CA). Protein expression is driven from the cytomegalovlrus (CMV) promoter. The recombinant
proteins have the myc epitope and 6X His epitope fused to the carboxyl-terminus. The pcDNA3.1/MycHis vector also
contains the bovine growth hormone (BGH) polyadenylation signal and transcription termination sequence to enhance mRNA
stability, along with the SV40 origin for episomal replication and simple vector rescue in cell lines expressing the large T
antigen. The Neomycin resistance gene can be used, as it allows for selection of mammalian cells expressing the protein
and the ampicillin resistance gene and ColE1 origin permits selection and maintenance of the plasmid in E. coli. Figure 22
shows expression of 191P4D12(b).pcDNA3.1/MycHis following vector transfection into 293T cells. 293T cells were
transfected with either 191P4D12(b).pcDNA3.1/mychis or pcDNA3.11mychis vector control. Forty hours later cell lysates
00 were collected. Samples were run on an SDS-PAGE acrylamide gel, blotted and stained with anti-his antibody. The blot
was developed using the ECL chemiluminescence kit and visualized by autoradiography. Results show expression of
191P4D12(b) in the lysates of 191P4D12(b).pcDNA3.1/mychis transfected cells (Lane but not from the control
pcDNA3.1/mychis (Lane 4).
pcDNA3.11CT-GFP-TOPO Construct: To express 191P4D12(b) in mammalian cells and to allow detection of the
recombinant proteins using fluorescence, a 191P4D12(b) ORF, or portions thereof, with a consensus Kozak translation
initiation site are cloned into pcDNA3.1/CT-GFP-TOPO (Invitrogen, CA). Protein expression is driven from the
cytomegalovirus (CMV) promoter. The recombinant proteins have the Green Fluorescent Protein (GFP) fused to the
carboxyl-terminus facilitating non-invasive, in vivo detection and cell biology studies. The pcDNA3.1CT-GFP-TOPO vector
r also contains the bovine growth hormone (BGH) polyadenylation signal and transcription termination sequence to enhance
mRNA stability along with the SV40 origin for episomal replication and simple vector rescue in cell lines expressing the large
00 T antigen. The Neomycin resistance gene allows for selection of mammalian cells that express the protein, and the
Sampicillin resistance gene and ColE1 origin permits selection and maintenance of the plasmid in E. coli. Additional
N constructs with an amino-terminal GFP fusion are made in pcDNA3.1/NT-GFP-TOPO spanning the entire length of a
191P4D12(b) protein.
PAPta: A 191P4D12(b) ORF, or portions thereof, is cloned into pAPtag-5 (GenHunter Corp. Nashville, TN). This
construct generates an alkaline phosphatase fusion at the carboxyl-terminus of a 191P4D12(b) protein while fusing the IgGK
signal sequence to the amino-terminus. Constructs are also generated in which alkaline phosphatase with an amino-terminal
IgGK signal sequence is fused to the amino-terminus of a 191P4D12(b) protein. The resulting recombinant 191P4D12(b)
proteins are optimized for secretion into the media of transfected mammalian cells and can be used to identify proteins such
as ligands or receptors that interact with 191 P4D12(b) proteins. Protein expression is driven from the CMV promoter and the
recombinant proteins also contain myc and 6X His epitopes fused at the carboxyl-terminus that facilitates detection and
purification. The Zeocin resistance gene present in the vector allows for selection of mammalian cells expressing the
recombinant protein and the ampicillin resistance gene permits selection of the plasmid in E coli.
A 191P4D12(b) v.1 extracellular domain was cloned into pTag-5 plasmid. This vector is similar to pAPtag
but without the alkaline phosphatase fusion. This construct generates 191P4D12(b) protein with an amino-terminal IgGK
signal sequence and myc and 6X His epitope tags at the carboxyl-terminus that facilitate detection and affinity purification.
The resulting recombinant 191P4D12(b) protein is optimized for secretion into the media of transfected mammalian cells, and
is used as immunogen or ligand to identify proteins such as ligands or receptors that interact with the 191P4D12(b) proteins.
Protein expression is driven from the CMV promoter. The Zeocin resistance gene present in the vector allows for selection
of mammalian cells expressing the protein, and the ampicillin resistance gene permits selection of the plasmid in E. coli.
Figure 22 shows expression and secretion of the extracellular domain of 191P4D12(b) following 191P4D12(b).pTag5 vector
transfection into 293T cells. 293T cells were transfected with 191P4D12(b) .pTag5. Forty hours later, cell lysate and
supematant were collected. Samples were run on an SDS-PAGE acrylamide gel, blotted and stained with anti-his antibody.
The blot was developed using the ECL chemiluminescence kit and visualized by autoradiography. Results show expression
from 191P4D12(b).pTag5 plasmid of 191P4D12(b) extracellular domain in the lysate (Lane 2) and secretion in the culture
supematant (Lane 1).
191P4D12(b) ORF, or portions thereof, is also cloned into pTag-5 plasmid.
PsecFc: A 191P4D12(b) ORF, or portions thereof, is also cloned into psecFc. The psecFc vector was assembled
by cloning the human immunoglobulin G1 (IgG) Fc (hinge, CH2, CH3 regions) into pSecTag2 (Invitrogen, California). This
construct generates an IgG1 Fc fusion at the carboxyl-terminus of the 191P4D12(b) proteins, while fusing the IgGK signal
sequence to N-terminus. 191P4D12(b) fusions utilizing the murine IgG1 Fc region are also used. The resulting recombinant
0o 191P4D12(b) proteins are optimized for secretion Into the media of transfected mammalian cells, and can be used as
0 immunogens or to identify proteins such as ligands or receptors that interact with 191P4D12(b) protein. Protein expression is
driven from the CMV promoter. The hygromycin resistance gene present in the vector allows for selection of mammalian
cells that express the recombinant protein, and the ampicillin resistance gene permits selection of the plasmid in E. coli.
pSRa Constructs: To generate mammalian cell lines that express 191P4D12(b) constitutively, 191P4D12(b)
ORF, or portions thereof, of 191P4D12(b) were cloned into pSRa constructs. Amphotropic and ecotropic retroviruses were
generated by transfection of pSRa constructs into the 293T-10A1 packaging line or co-transfection of pSRa and a helper
plasmid (containing deleted packaging sequences) into the 293 cells, respectively. The retrovirus is used to infect a variety
of mammalian cell lines, resulting in the integration of the cloned gene, 191P4D12(b), into the host cell-lines. Protein
C expression is driven from a long terminal repeat (LTR). The Neomycin resistance gene present in the vector allows for
p selection of mammalian cells that express the protein, and the ampicillin resistance gene and ColE1 origin permit selection0 0 and maintenance of the plasmid in E. coli. The retroviral vectors can thereafter be used for infection and generation of
various cell lines using, for example, PC3, NIH 3T3, TsuPrl, 293 or rat-1 cells.
Figure 23 shows stable expression of 191P4D12(b) following 191P4D12(b).pSRa transduction into 3T3 cells. 3T3
cells were transduced with the pSRa retroviral vector encoding the 191P4D12(b) gene. Following selection with neomycin,
the cells were expanded and RNA was extracted. Northern blot with 10 ug of total RNAlane was probed with the
191P4D12(b) SSH sequence. Size standards In kilobases (kb) are indicated on the side. Results show expression of the
191P4D12(b) transcript driven from the retroviral LTR, which migrates slower than the endogenous 4 kb 191P4D12(b)
transcript detected in the positive control LAPC-4AD.
Additional pSRa constructs are made that fuse an epitope tag such as the FLAGTM tag to the carboxyl-terminus of
191P4D12(b) sequences to allow detection using anti-Flag antibodies. For example, the FLAGTM sequence 5' gat tac aag
gat gac gac gat aag 3' (SEQ ID NO: 60) is added to cloning primer at the 3' end of the ORF. Additional pSRa constructs
are made to produce both amino-terminal and carboxyl-terminal GFP and myc/6X His fusion proteins of the full-length
191P4D12(b) proteins.
Additional Viral Vectors: Additional constructs are made for viral-mediated delivery and expression of
191P4012(b). High virus titer leading to high level expression of 191P4D12(b) is achieved in viral delivery systems such as
adenoviral vectors and herpes amplicon vectors. A 191P4D12(b) coding sequences or fragments thereof are amplified by
PCR and subcloned into the AdEasy shuttle vector (Stratagene). Recombination and virus packaging are performed
according to the manufacturer's instructions to generate adenoviral vectors. Alternatively, 191P4D12(b) coding sequences
or fragments thereof are cloned into the HSV-1 vector (Imgenex) to generate herpes viral vectors. The viral vectors are
thereafter used for infection of various cell lines such as PC3, NIH 3T3, 293 or rat-1 cells.
Regulated Expression Systems: To control expression of 191P4D12(b) in mammalian cells, coding sequences
of 191P4D12(b), or portions thereof, are cloned into regulated mammalian expression systems such as the T-Rex System
(Invitrogen), the GeneSwitch System (Invitrogen) and the tightly-regulated Ecdysone System (Sratagene). These systems
allow the study of the temporal and concentration dependent effects of recombinant 191P4D12(b). These vectors are
thereafter used to control expression of 191P4D12(b) in various cell lines such as PC3, NIH 3T3, 293 or rat-1 cells.
B. Baculovirus Expression Systems
To generate recombinant 191P4D12(b) proteins in a baculovirus expression system, 191P4D12(b) ORF, or
portions thereof, are cloned into the baculovirus transfer vector pBlueBac 4.5 (Invitrogen), which provides a His-tag at the N-
terminus. Specifically, pBlueBac-191P4D12(b) Is co-transfected with helper plasmid pBac-N-Blue (Invitrogen) into SF9
(Spodoptera frugiperda) insect cells to generate recombinant baculovirus (see Invitrogen instruction manual for;details).
Baculovirus is then collected from cell supernatant and purified by plaque assay.
00 Recombinant 191P4D12(b) protein is then generated by infection of HighFive insect cells (Invitrogen) with purified
S baculovirus. Recombinant 191P4D12(b) protein can be detected using anti-191P4D12(b) or anti-His-tag antibody.
Cr 191P4012(b) protein can be purified and used in various cell-based assays or as immunogen to generate polyclonal and
monoclonal antibodies specific for 191P4D12(b).
Example 9: Antigenicity Profiles and Secondary Structure
c Figure Figure Figure Figure and Figure 9(A-C) depict graphically five amino acid
profiles of 191P4D12(b) variants 1, 7, and 9, each assessment available by accessing the ProtScale website located on the
S World Wide Web at (.expasy.ch/cgi-bin/protscale.pl) on the ExPasy molecular biology server.
C1 These profiles: Figure 5, Hydrophilicity, (Hopp Woods 1981. Proc. Natl. Acad. Sci. U.S.A. 78:3824-
3828); Figure 6, Hydropathicity, (Kyte Doolittle 1982. J. Mol. Biol. 157:105-132); Figure 7, Percentage Accessible
Residues (Janin 1979 Nature 277:491-492); Figure 8, Average Flexibility, (Bhaskaran and Ponnuswamy 1988.00
Int. J. Pept. Protein Res. 32:242-255); Figure 9, Beta-turn (Deleage, Roux B. 1987 Protein Engineering 1:289-294); and
C optionally others available in the art, such as on the ProtScale website, were used to identify antigenic regions of each of the
191P4D12(b) variant proteins. Each of the above amino acid profiles of 191P4D12(b) variants were generated using the
following ProtScale parameters for analysis: 1) A window size of 9; 2) 100% weight of the window edges compared to the
window center; and, 3) amino acid profile values normalized to lie between 0 and 1.
Hydrophilicity (Figure Hydropathicity (Figure 6) and Percentage Accessible Residues (Figure 7) profiles were
used to determine stretches of hydrophilic amino acids values greater than 0.5 on the Hydrophilicity and Percentage
Accessible Residues profile, and values less than 0.5 on the Hydropathicity profile). Such regions are likely to be exposed to
the aqueous environment, be present on the surface of the protein, and thus available for immune recognition, such as by
antibodies.
Average Flexibility (Figure 8) and Beta-turn (Figure 9) profiles determine stretches of amino acids values
greater than 0.5 on the Beta-tur profile and the Average Flexibility profile) that are not constrained in secondary structures
such as beta sheets and alpha helices. Such regions are also more likely to be exposed on the protein and thus accessible
to immune recognition, such as by antibodies.
Antigenic sequences of the 191P4D12(b) variant proteins indicated, by the profiles set forth in Figure
Figure Figure Figure andlor Figure 9(A-C) are used to prepare immunogens, either peptides or
nucleic acids that encode them, to generate therapeutic and diagnostic anti-191P4D12(b) antibodies. The immunogen can
be any 5, 6, 7, 8, 9, 10, 11, 12,13,14,15,16,17,18,19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50 or more than
contiguous amino acids, or the corresponding nucleic acids that encode them, from the 191P4D12(b) protein variants listed
in Figures 2 and 3, of which the amino acid profiles are shown in Figure 9, or are identical to the variant sequences that are
the same as a variant depicted in figure 9. In particular, peptide immunogens of the invention can comprise, a peptide region
of at least 5 amino acids of Figures 2 and 3 in any whole number increment that includes an amino acid position having a
value greater than 0.5 in the Hydrophilicity profiles of Figure 5; a peptide region of at least 5 amino acids of Figures 2 and 3
in any whole number increment that includes an amino acid position having a value less than 0.5 in the Hydropathicity profile
of Figures 6; a peptide region of at least 5 amino acids of Figures 2 and 3 in any whole number increment that includes an
amino acid position having a value greater than 0.5 in the Percent Accessible Residues profiles of Figure 7; a peptide region
of at least 5 amino acids of Figures 2 and 3 in any whole number increment that includes an amino acid position having a
value greater than 0.5 in the Average Flexibility profiles on Figure 8 and, a peptide region of at least 5 amino acids of
Figures 2 and 3 In any whole number increment that includes an amino acid position having a value greater than 0.5 in the
Beta-turn profile of Figures 9. Peptide immunogens of the invention can also comprise nucleic acids that encode any of the
0 forgoing.
All immunogens of the invention, peptide or nucleic acid, can be embodied in human unit dose form, or comprised
by a composition that includes a pharmaceutical excipient compatible with human physiology.
The secondary structure of 191P4D12(b) protein variants 1,7, and 9, namely the predicted presence and location
of alpha helices, extended strands, and random coils, is predicted from the primary amino acid sequence using the HNN
Hierarchical Neural Network method (Guermeur, 1997, http://pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsann.html),
accessed from the ExPasy molecular biology server located on the World Wide Web at (.expasy.ch/tools/). The analysis
indicates that 191P4D12(b) variant 1 is composed of 24.90% alpha helix, 18.63% extended strand, and 56.47% random coil
(Figure 13A). Variant 6 is composed of 28.47% alpha helix, 19.32% extended strand, and 52.20% random coil (Figure 13B).
Variant 7 is composed of 26.19% alpha helix, 18.76% extended strand, and 55.05% random coil (Figure 13C). Variant 7 is
C composed of 56.20% alpha helix, 8.76% extended strand, and 35.04% random coil (Figure 13D).
0 Analysis for the potential presence of transmembrane domains in the 191P4D12(b) variant proteins was carried out
0 using a variety of transmembrane prediction algorithms accessed from the ExPasy molecular biology server located on the
World Wide Web at (.expasy.ch/tools/). Shown graphically in figure 13E and 13F are the results of analysis of variant 1
depicting the presence and location of 1 transmembrane domain using the TMpred program (Figure 13E) and 1
transmembrane domain using the TMHMM program (Figure 13F). Shown graphically In figure 13G and 13H are the results
of analysis of variant 6 depicting the presence and location of 1 transmembrane domains using the TMpred program (Figure
13G) and 1 transmembrane domain using the TMHMM program (Figure 13H). Shown graphically in figure 131 and 13J are
the results of analysis'of variant 7 depicting the presence and location of 1 transmembrane domain using the TMpred
program (Figure 131) and 1 transmembrane domain using the TMHMM program (Figure 13J). Shown graphically in figure
13K and 13L are the results of analysis of variant 9 depicting the presence and location of 2 transmembrane domains using
the TMpred program (Figure 1K) and 1 transmembrane domain using the TMHMM program (Figure 13L). The results of
each program, namely the amino acids encoding the transmembrane domains are summarized in Table VI and Table L.
Example 10: Generation of 191P4D12(b) Polyclonal Antibodies
Polyclonal antibodies can be raised in a mammal, for example, by one or more injections of an immunizing agent
and, if desired, an adjuvant. Typically, the immunizing agent and/or adjuvant will be injected in the mammal by multiple
subcutaneous or intraperitoneal injections. In addition to immunizing with a full length 191P4D12(b) protein variant,
computer algorithms are employed in design of immunogens that, based on amino acid sequence analysis contain
characteristics of being antigenic and available for recognition by the immune system of the immunized host (see the
Example entitled "Antigenicity Profiles and Secondary Structures"). Such regions would be predicted to be hydrophilic,
flexible, in beta-turn conformations, and be exposed on the surface of the protein (see, Figure Figure 6(A C),
Figure Figure 8(A or Figure 9(A-C) for amino acid profiles that indicate such regions of 191P4D12(b) protein
variants).
For example, recombinant bacterial fusion proteins or peptides containing hydrophilic, flexible, beta-turn regions of
191P4D12(b) protein variants are used as antigens to generate polyclonal antibodies in New Zealand White rabbits or
monoclonal antibodies as described in Example 11. For example, in 191P4D12(b) variant 1, such regions include, but are
not limited to, amino acids 27-39, amino acids 93-109, and amino acids 182-204. In sequence unique to variant 7, such
regions include, but are not limited to, amino acids 400-420. In sequence specific for variant 9, such regions include, but are
not limited to, amino acids 80-94. It is useful to conjugate the immunizing agent to a protein known to be immunogenic in the
mammal being immunized. Examples of such immunogenic proteins include, but are not limited to, keyhole limpet
hemocyanin (KLH), serum albumin, bovine thyroglobulin, and soybean trypsin inhibitor. In one embodiment, a peptide
00 encoding amino acids 52-63 of 191P4D12(b) variant 1 and amino acids 179-197 were each conjugated to KLH and used to
S immunize separate rabbits. Alternatively the immunizing agent may include all or portions of the 191P4D12(b) variant
C proteins, analogs or fusion proteins thereof. For example, the 191P4D12(b) variant 1 amino acid sequence can be fused
using recombinant DNA techniques to any one of a variety of fusion protein partners that are well known in the art, such as
glutathione-S-transferase (GST) and HIS tagged fusion proteins. In another embodiment, amino acids 2-349 of
C 191P4D12(b) variant 1 was fused to GST using recombinant techniques and the pGEX expression vector, expressed,
purified and used to immunize a rabbit Such fusion proteins are purified from induced bacteria using the appropriate affinity
matrix.
Other recombinant bacterial fusion proteins that may be employed include maltose binding protein, LacZ,
N thioredoxin, NusA, or an immunoglobulin constant region (see the section entitled "Production of 191P4D12(b) in Prokaryotic
Systems" and Current Protocols In Molecular Biology, Volume 2, Unit 16, Frederick M. Ausubul et al. eds., 1995; Linsley,
Brady, Urnes, Grosmaire, Damle, and Ledbetter, L.(1991) J.Exp. Med. 174, 561-566).00
SIn addition to bacterial derived fusion proteins, mammalian expressed protein antigens are also used. These
c antigens are expressed from mammalian expression vectors such as the Tag5 and Fc-fusion vectors (see the section
entitled "Production of Recombinant 191P4D12(b) in Eukaryotic Systems"), and retain post-translational modifications such
as glycosylations found in native protein. In one embodiment, amino acids 31-347 of variant 1, encoding the extracellular
domain, was doned into the Tag5 mammalian secretion vector, and expressed in 293T cells resulting in a soluble secreted
protein (Figure 22). The recombinant protein is purified by metal chelate chromatography from tissue culture supernatants of
293T cells stably expressing the recombinant vector. The purified Tag5 191P4D12(b) protein is then used as immunogen.
During the immunization protocol, it is useful to mix or emulsify the antigen in adjuvants that enhance the immune
response of the host animal. Examples of adjuvants include, but are not limited to, complete Freund's adjuvant (CFA) and
MPL-TDM adjuvant (monophosphoryl Lipid A, synthetic trehalose dicorynomycolate).
In a typical protocol, rabbits are initially immunized subcutaneously with up to 200 pg, typically 100-200 pg, of
fusion protein or peptide conjugated to KLH mixed in complete Freund's adjuvant (CFA). Rabbits are then injected
subcutaneously every two weeks with up to 200 pg, typically 100-200 pg, of the immunogen in incomplete Freund's adjuvant
(IFA). Test bleeds are taken approximately 7-10 days following each immunization and used to monitor the titer of the
antiserum by ELISA.
To test reactivity and specificity of immune serum, such as the rabbit serum derived from immunization with the
-191P4D12(b) variant 1 protein, the full-length 191P4D12(b) variant 1 cDNA is cloned into pCDNA 3.1 myc-his
expression vector (Invitrogen, see the Example entitled "Production of Recombinant 191P4D12(b) in Eukaryotic Systems").
After transfection of the constructs into 293T cells, cell lysates are probed with the anti-191P4D12(b) serum and with anti-His
antibody (Santa Cruz Biotechnologies, Santa Cruz, CA) to determine specific reactivity to denatured 191P4D12(b) protein
using the Western blot technique. In addition, the Immune serum is tested by fluorescence microscopy, flow cytometry and
immunoprecipitation against 293T (Figure 22) and other recombinant 191P4D12(b)-expressing cells to determine specific
recognition of native protein. Western blot, immunoprecipitation, fluorescent microscopy, and flow cytometric techniques
using cells that endogenously express 191P4D12(b) are also carried out to test reactivity and specificity.
Anti-serum from rabbits immunized with 191P4D12(b) variant fusion proteins, such as GST and MBP fusion proteins, are
purified by depletion of antibodies reactive to the fusion partner sequence by passage over an affinity column containing the
fusion partner either alone or in the context of an irrelevant fusion protein. For example, antiserum derived from a GST-
191P4D12(b) variant 1 fusion protein is first purified by passage over a column of GST protein covalently coupled to AffiGel
1
matrix (BioRad, Hercules, Calif.). The antiserum is then affinity purified by passage over a column composed of a MBP-
191P4D12(b) fusion protein covalently coupled to Affigel matrix. The serum is then further purified by protein G affinityS chromatography to isolate the IgG fraction. Sera from other His-tagged antigens and peptide immunized rabbits as well as
0 fusion partner depleted sera are affinity purified by passage over a column matrix composed of the original protein
immunogen or free peptide.
Example 11: Generation of 191P4D12(b) Monoclonal Antibodies (mAbs)
In one embodiment, therapeutic mAbs to 191P4D12(b) variants comprise those that react with epitopes specific for
each variant protein or specific to sequences in common between the variants that would disrupt or modulate the biological
function of the 191P4D12(b) variants, for example those that would disrupt the interaction with ligands and binding partners.
Immunogens for generation of such mAbs include those designed to encode or contain the entire 191P4D12(b) protein
S variant sequence, regions of the 191P4D12(b) protein variants predicted to be antigenic from computer analysis of the amino
acid sequence (see, Figure Figure Figure Figure or Figure and the Example
00 entitled "Antigenicity Profiles"). Immunogens include peptides, recombinant bacterial proteins, and mammalian expressed
Tag 5 proteins and human and murine IgG FC fusion proteins. In addition, cells engineered to express high levels of aC respective 191P4D12(b) variant, such as 293T-191P4D12(b) variant 1 or 300.19-191P4D12(b) variant Imurine Pre-B cells,
are used to immunize mice.
To generate mAbs to a 191P4D12(b) variant, mice are first immunized intraperitoneally (IP) with, typically, 10-50
pg of protein immunogen or 107 191P4D12(b)-expressing cells mixed in complete Freund's adjuvant. Mice are then
subsequently immunized IP every 2-4 weeks with, typically, 10-50 pg of protein immunogen or 107 cells mixed in incomplete
Freund's adjuvant. Alternatively, MPL-TDM adjuvant is used in immunizations. In addition to the above protein and cell-
based immunization strategies, a DNA-based immunization protocol is employed in which a mammalian expression vector
encoding a 191P4D12(b) variant sequence is used to immunize mice by direct injection of the plasmid DNA. For example,
amino acids 31-347 was cloned into the Tag5 mammalian secretion vector and the recombinant vector will then be used asimmunogen. In another example the same amino acids are cloned into an Fc-fusion secretion vector in which the
191P4D12(b) variant 1 sequence is fused at the amino-terminus to an IgK leader sequence and at the carboxyl-terminus tothe coding sequence of the human or murine IgG Fc region. This recombinant vector is then used as immunogen. The
plasmid immunization protocols are used in combination with purified proteins expressed from the same vector and with cellsexpressing the respective 191P4D12(b) variant
During the immunization protocol, test bleeds are taken 7-10 days following an injection to monitor titer and
specificity of the immune response. Once appropriate reactivity and specificity is obtained as determined by ELISA, Western
blotting, immunoprecipitation, fluorescence microscopy, and flow cytometric analyses, fusion and hybridoma generation isthen carried out with established procedures well known in the art (see, Harlow and Lane, 1988).
In one embodiment for generating 191P4D12(b) monoclonal antibodies, a Tag5-191P4D12(b) variant 1 antigen
encoding amino acids 31-347, was expressed (Figure 22) and then purified from stably transfected 293T cells. Balb C mice
are initially immunized intraperitoneally with 25 jg of the Tag5-191P4D12(b) variant 1 protein mixed in complete Freund's
adjuvant. Mice are subsequently immunized every two weeks with 25 pig of the antigen mixed in incomplete Freund's
adjuvant for a total of three immunizations. ELISA using the Tag5 antigen determines the titer of serum from immunized
mice. Reactivity and specificity of serum to full length 191P4D12(b) variant 1 protein is monitored by Western blotting,immunoprecipitation and flow cytometry using 293T cells transfected with an expression vector encoding the 191P4D12(b)variant 1 cDNA (see the Example entitled "Production of Recombinant 191P4D12(b) in Eukaryotic Systems"and Figure 22). Other recombinant 191P4D12(b) variant 1-expressing cells or cells endogenously expressing 191P4D12(b)
variant 1 are also used. Mice showing the strongest reactivity are rested and given a final injection of Tag5 antigen in PBS
and then sacrificed four days later. The spleens of the sacrificed mice are harvested and fused to SPO/2 myeloma cells
00 using standard procedures (Harlow and Lane, 1988). Supernatants from HAT selected growth wells are screened by ELISA,
S Western blot, immunoprecipitation, fluorescent microscopy, and flow cytometry to identify 191P4D12(b) specific antibody-
Cl producing clones.
To generate monoclonal antibodies that are specific for each 191P4D12(b) variant protein, immunogens are
S designed to encode sequences unique for each variant. In one embodiment, a GST-fusion antigen encoding the full
sequence of 191P4D12(b) variant 9 (AA 1-137) is produced, purified, and used as immunogen to derive monoclonal
LC antibodies specific to 191P4D12(b) variant 2. In another embodiment, an antigenic peptide composed of amino acids 400-
420 of 191P4D12(b) variant 7 is coupled to KLH and used as immunogen. Hybridoma supematants are then screened on
the respective antigen and then further screened on cells expressing the specific variant and cross-screened on cells
C<l expressing the other variants to derive variant-specific monoclonal antibodies.
The binding affinity of a 191 P4D 12(b) variant monoclonal antibody Is determined using standard technologies.
r1 Affinity measurements quantify the strength of antibody to epitope binding and are used to help define which 191P4D12(b)00
variant monoclonal antibodies preferred for diagnostic or therapeutic use, as appreciated by one of skill in the art. The
S BIAcore system (Uppsala, Sweden) is a preferred method for determining binding affinity. The BIAcore system uses surface
plasmon resonance (SPR, Welford K. 1991, Opt. Quant. Elect. 23:1; Morton and Myszka, 1998, Methods in Enzymology 295:
268) to monitor biomolecular interactions in real time. BIAcore analysis conveniently generates association rate constants,
dissociation rate constants, equilibrium dissociation constants, and affinity constants.
Example 12: HLA Class I and Class II Binding Assays
HLA class I and class II binding assays using purified HLA molecules are performed in accordance with disclosed
protocols PCT publications WO 94/20127 and WO 94/03205; Sidney et al., Current Protocols in Immunology 18.3.1
(1998); Sidney, et al., J. Immunol. 154:247 (1995); Sette, et Mol. Immunol. 31:813 (1994)). Briefly, purified MHC
molecules (5 to 500 nM) are incubated with various unlabeled peptide inhibitors and 1-10 nM 1251-radiolabeled probe peptides
as described. Following incubation, MHC-peptide complexes are separated from free peptide by gel filtration and the fraction
of peptide bound is determined. Typically, in preliminary experiments, each MHC preparation is titered in the presence of
fixed amounts of radiolabeled peptides to determine the concentration of HLA molecules necessary to bind 10-20% of the
total radioactivity. All subsequent inhibition and direct binding assays are performed using these HLA concentrations.
Since under these conditions [label]<[HLA] and ICso_[HLA], the measured ICso 'values are reasonable
approximations of the true Ko values. Peptide inhibitors are typically tested at concentrations ranging from 120 p.g/ml to 1.2
ng/ml, and are tested in two to four completely independent experiments. To allow comparison of the data obtained in
different experiments, a relative binding figure is calculated for each peptide by dividing the ICso of a positive control for
inhibition by the ICso for each tested peptide'(typically unlabeled versions of the radiolabeled probe peptide). For database
purposes, and inter-experiment comparisons, relative binding values are compiled. These values can subsequently be
converted back into ICso nM values by dividing the ICs0 nM of the positive controls for inhibition by the relative binding of the
peptide of interest. This method of data compilation is accurate and consistent for comparing peptides that have been tested
on different days, or with different lots of purified MHC.
Binding assays as outlined above may be used to analyze HLA supermotif and/or HLA motif-bearing peptides (see
Table IV).
Example 13: Identification of HLA Supermotif- and Motif-Bearing CTL Candidate Epitopes
HLA vaccine compositions of the invention can include multiple epitopes. The multiple epitopes can comprise
multiple HLA supermotifs or motifs to achieve broad population coverage. This example illustrates the identification and0 0 confirmation of supermotif- and motif-bearing epitopes for the inclusion in such a vaccine composition. Calculation of
0 population coverage is performed using the strategy described below.
Computer searches and algorithms for identification of supermotif and/or motif-bearing epitopes
SThe searches performed to identify the motif-bearing peptide sequences in the Example entitled "Antigenicity
Profiles" and Tables VII-XXI and XXII-XLIX employ the protein sequence data from the gene product of 191P4D12(b) set
O forth in Figures 2 and 3, the specific search peptides used to generate the tables are listed in Table VII.
Computer searches for epitopes bearing HLA Class I or Class II supermotifs or motifs are performed as follows, All
translated 191P4D12(b) protein sequences are analyzed using a text string search software program to identify potential
peptide sequences containing appropriate HLA binding motifs; such programs are readily produced in accordance with
S information in the art in view of known motif/supermotif disclosures. Furthermore, such calculations can be made mentally.
SIdentified A2-, A3-, and DR-supermotif sequences are scored using polynomial algorithms to predict their capacity
00 to bind to specific HLA-Class I or Class II molecules. These polynomial algorithms account for the impact of different amino
acids at different positions, and are essentially based on the premise that the overall affinity (or AG) of peptide-HLA molecule
S interactions can be approximated as a linear polynomial function of the type:
"AG" aul x a2 x a x ani
where aji is a coefficient which represents the effect of the presence of a given amino acid at a given position (i)
along the sequence of a peptide of n amino acids. The crucial assumption of this method is that the effects at each position
are essentially independent of each other independent binding of Individual side-chains). When residue j occurs at
position i in the peptide, it is assumed to contribute a constant amount ji to the free energy of binding of the peptide
irrespective of the sequence of the rest of the peptide.
The method of derivation of specific algorithm coefficients has been described in Gulukota et al., J. Mol. Biol.
267:1258-126, 1997; (see also Sidney et al., Human Immunol. 45:79-93, 1996; and Southwood et al., J. Immunol. 160:3363-
3373, 1998). Briefly, for all i positions, anchor and non-anchor alike, the geometric mean of the average relative binding
(ARB) of all peptides carrying j is calculated relative to the remainder of the group, and used as the estimate of j. For Class
II peptides, if multiple alignments are possible, only the highest scoring alignment is utilized, following an iterative procedure.
To calculate an algorithm score of a given peptide in a test set, the ARB values corresponding to the sequence of the peptideare multiplied. If this product exceeds a chosen threshold, the peptide is predicted to bind. Appropriate thresholds are
chosen as a function of the degree of stringency of prediction desired.
Selection of HLA-A2 supertype cross-reactive peptides
Protein sequences from 191P4D12(b) are scanned utilizing motif identification software, to identify 9- 10- and11-mer sequences containing the HLA-A2-supermotif main anchor specificity. Typically, these sequences are then scoredusing the protocol described above and the peptides corresponding to the positive-scoring sequences are synthesized andtested for their capacity to bind purified HLA-A*0201 molecules in vitro (HLA-A*0201 is considered a prototype A2 supertypemolecule).
These peptides are then tested for the capacity to bind to additional A2-supertype molecules (A*0202, A*0203,A*0206, and A*6802). Peptides that bind to at least three of the five A2-supertype alleles tested are typically deemed A2-supertype cross-reactive binders. Preferred peptides bind at an affinity equal to or less than 500 nM to three or more HLA-A2 supertype molecules.
Selection of HLA-A3 supermotif-bearing epitopes
The 191P4D12(b) protein sequence(s) scanned above is also examined for the presence of peptides with the HLA-
c0 A3-supermotif primary anchors. Peptides corresponding to the HLA A3 supermotif-bearing sequences are then synthesized
0 and tested for binding to HLA-A*0301 and HLA-A*1101 molecules, the molecules encoded by the two most prevalent A3-
C supertype alleles. The peptides that bind at least one of the two alleles with binding affinities of <500 nM, often 200 nM,
are then tested for binding cross-reactivity to the other common A3-supertype alleles A*3101, A*3301, and A*6801) to
identify those that can bind at least three of the five HLA-A3-supertype molecules tested.
C Selection of HLA-B7 supermotif bearing epitopes
The 191P4D12(b) protein(s) scanned above is also analyzed for the presence of 9- 10-, or 11-mer peptides with
I the HLA-B7-supermotif. Corresponding peptides are synthesized and tested for binding to HLA-B*0702, the molecule
C encoded by the most common 87-supertype allele the prototype B7 supertype allele). Peptides binding B*0702 with
ICso of 500 nM are identified using standard methods. These peptides are then tested for binding to other common B7-
CK supertype molecules 8*3501, B*5101, B'5301, and B*5401). Peptides capable of binding to three or more of the five
B7-supertype alleles tested are thereby identified.
Selection of Al and A24 motif-bearing epitopes
To further increase population coverage, HLA-A1 and -A24 epitopes can also be incorporated into vaccine
compositions. An analysis of the 191P4D12(b) protein can also be performed to identify HLA-A1- and A24-motif-containing
sequences.
High affinity and/or cross-reactive binding epitopes that bear other motif and/or supermotifs are identified using
analogous methodology.
Example 14: Confirmation of Immunogenicity
Cross-reactive candidate CTL A2-supermotif-bearing peptides that are identified as described herein are selected
to confirm in vitro immunogenicity. Confirmation is performed using the following methodology:
Target Cell Lines for Cellular Screening:
The .221A2.1 cell line, produced by transferring the HLA-A2.1 gene into the HLA-A, -C null mutant human B-
lymphoblastoid cell line 721.221, is used as the peptide-loaded target to measure activity of HLA-A2.1-restridted CTL. This
cell line is grown in RPMI-1640 medium supplemented with antibiotics, sodium pyruvate, nonessential amino acids and
heat inactivated FCS. Cells that express an antigen of interest, or transfectants comprising the gene encoding the
antigen of interest, can be used as target cells to confirm the ability of peptide-specific CTLs to recognize endogenous
antigen.
Primary CTL Induction Cultures:
Generation of Dendritic Cells PBMCs are thawed in RPMI with 30 lpg/ml DNAse, washed twice and
resuspended in complete medium (RPMI-1640 plus 5% AB human serum, non-essential amino adds, sodium pyruvate, L-
glutamine and penicillin/streptomycin). The monocytes are purified by plating 10 x 106 PBMC/well in a 6-well plate. After 2
hours at 37"C, the non-adherent cells are removed by gently shaking the plates and aspirating the supernatants. The wells
are washed a total of three times with 3 ml RPMI to remove most of the non-adherent and loosely adherent cells. Three ml of
complete medium containing 50 ng/ml of GM-CSF and 1,000 U/ml of IL-4 are then added to each well. TNFa( is added to the
DCs on day 6 at 75 ng/ml and the cells are used for CTL induction cultures on day 7.
Induction of CTL with DC and Peptide: CD8+ T-cells are isolated by positive selection with Dynal immunomagnetic
beads (Dynabeads® M-450) and the detacha-bead@ reagent. Typically about 200-250x10 6 PBMC are processed to obtain
0 24x10 6 CD8* T-cells (enough for a 48-well plate culture). Briefly, the PBMCs are thawed In RPMI with 30pg/ml DNAse,
washed once with PBS containing 1% human AB serum and resuspended In PBS/1% AB serum at a concentration of
S 20xl06cells/ml. The magnetic beads are washed 3 times with PBS/AB serum, added to the cells (140pl beads/20x10 6 cells)
and Incubated for 1 hour at 4°C with continuous mixing. The beads and cells are washed 4x with PBS/AB serum to remove
the nonadherent cells and resuspended at 100x10 6 cells/ml (based on the original cell number) in PBS/AB serum containing
C 100pl/ml detacha-bead® reagent and 30 pg/ml DNAse. The mixture is incubated for 1 hour at room temperature with
continuous mixing. The beads are washed again with PBS/AB/DNAse to collect the CD8+ T-cells. The DC are collected and
centrifuged at 1300 rpm for 5-7 minutes, washed once with PBS with 1% BSA, counted and pulsed with 40pg/ml of peptide
at a cell concentration of 1-2x10/ml in the presence of 3pg/ml 112- microglobulin for 4 hours at 20°C. The DC are then
NC Irradiated (4,200 rads), washed 1 time with medium and counted again.
N Setting up induction cultures: 0.25 ml cytokine-generated DC (at 1x10 s cells/ml) are co-cultured with 0.25ml of
00 CD8+ T-cells (at 2x10 6 cell/ml) in each well of a 48-well plate in the presence of 10 ng/ml of IL-7. Recombinant human
0 is added the next day at a final concentration of 10 ng/ml and rhuman IL-2 is added 48 hours later at 10 IU/ml.
Restimulation of the induction cultures with peptide-pulsed adherent cells: Seven and fourteen days after the
primary induction, the cells are restimulated with peptide-pulsed adherent cells. The PBMCs are thawed and washed twice
with RPMI and DNAse. The cells are resuspended at 5x10 6 cells/ml and irradiated at -4200 rads. The PBMCs are plated at
2x10 6 in 0.5 ml complete medium per well and incubated for 2 hours at 370C. The plates are washed twice with RPMI by
tapping the plate gently to remove the nonadherent cells and the adherent cells pulsed with 10pg/ml of peptide in the
presence of 3 pg/ml 112 microglobulin in 0.25ml RPMI/5%AB per well for 2 hours at 37°C. Peptide solution from each well is
aspirated and the wells are washed once with RPMI. Most of the media is aspirated from the induction cullures (CD8+ cells)
and brought to 0.5 ml with fresh media. The cells are then transferred to the wells containing the peptide-pulsed adherent
cells. Twenty four hours later recombinant human IL-10 is added at a final concentration'of 10 ng/ml and recombinant
human IL2 is added the next day and again 2-3 days later at 501U/ml (Tsai et al., Critical Reviews in Immunology
18(1-2):65-75, 1998). Seven days later, the cultures are assayed for CTL activity in a 51Cr release assay. In some
experiments the cultures are assayed for peptide-specific recognition in the in situ IFNy ELISA at the time of the second
restimulation followed by assay of endogenous recognition 7 days later. After expansion, activity is measured in both assays
for a side-by-side comparison.
Measurement of CTL lytic activity by 5'Cr release.
Seven days after the second restimulation, cytotoxicity is determined in a standard (5 hr) s5 Cr release assay by
assaying individual wells at a single E:T. Peptide-pulsed targets are prepared by Incubating the cells with 10pg/ml peptide
overnight at 370C.
Adherent target cells are removed from culture flasks with trypsin-EDTA. Target cells are labeled with 200pCi of1Cr sodium chromate (Dupont, Wilmington, DE) for 1 hour at 370C. Labeled target cells are resuspended at 106 per ml and
diluted 1:10 with K562 cells at a concentration of 3.3x10 6/ml (an NK-sensitive erythroblastoma cell line used to reduce non-
specific lysis). Target cells (100 pl) and effectors (100pl) are plated in 96 well round-bottom plates and incubated for 5 hours
at 370C. At that time, 100 pl of supernatant are collected from each well and percent lysis is determined according to the
formula:
[(cpm of the test sample- cpm of the spontaneous slCr release sample)/(cpm of the maximal 51Cr release sample-
cpm of the spontaneous 51Cr release sample)] x 100.
Maximum and spontaneous release are determined by incubating the labeled targets with 1% Triton X-100 and
media alone, respectively. A positive culture is defined as one in which the specific lysis (sample- background) is 10% or
00 higher in the case of individual wells and is 15% or more at the two highest E:T ratios when expanded cultures are assayed.
SIn situ Measurement of Human IFNy Production as an Indicator of Peptide-specific and Endogenous Recognition
Cl Immulon 2 plates are coated with mouse anti-human IFNy monoclonal antibody (4 pg/ml 0.1M NaHCO3, pH8.2)
overnight at 4°C. The plates are washed with Ca2 Mg2 -free PBS/0.05% Tween 20 and blocked with PBS/10% FCS for two
hours, after which the CTLs (100 pl/well) and targets (100 pl/well) are added to each well, leaving empty wells for the
standards and blanks (which received media only). The target cells, either peptide-pulsed or endogenous targets, are used
l at a concentration of 1x10 6 cells/ml. The plates are incubated for 48 hours at 37°C with 5% CO2.
Recombinant human IFN-gamma is added to the standard wells starting at 400 pg or 1200pg/100 microliter/well
and the plate incubated for two hours at 37°C. The plates are washed and 100 pl of biotinylated mouse anti-human IFN-
S gamma monoclonal antibody (2 microgram/ml in PBS/3%FCS/0.05% Tween 20) are added and incubated for 2 hours at
room temperature. After washing again, 100 microliter HRP-streptavidin (1:4000) are added and the plates incubated for one
00 hour at room temperature. The plates are then washed 6x with wash buffer, 100 microliter/well developing solution (TMB
1:1) are added, and the plates allowed to develop for 5-15 minutes. The reaction is stopped with 50 microliter/well 1M H3P0 4
Cl and read at OD450. A culture is considered positive if it measured at least 50 pg of IFN-gammalwell above background and
is twice the background level of expression.
CTL Expansion.
Those cultures that demonstrate specific lytic activity against peptide-pulsed targets and/or tumor targets are
expanded over a two week period with anti-CD3. Briefly, 5x10 4 CD8+ cells are added to a T25 flask containing the following:
lx106 irradiated (4,200 rad) PBMC (autologous or allogeneic) per ml, 2x10 5 irradiated (8,000 rad) EBV- transformed cells per
ml, and OKT3 (anti-CD3) at 30ng per ml in RPMI-1640 containing 10% human AB serum, non-essential amino acids,
sodium pyruvate, 25pM 2-mercaptoethanol, L-glutamine and penicillin/streptomycin. Recombinant human IL2 is added 24
hours later at a final concentration of 2001U/ml and every three days thereafter with fresh media at 501U/ml. The cells are
split if the cell concentration exceeds lx10 6/ml and the cultures are assayed between days 13 and 15 at E:T ratios of 30,
3 and 1:1 in the s5 Cr release assay or at 1x10 6/ml in the in situ IFNy assay using the same targets as before the expansion.
Cultures are expanded in the absence of anti-CD3* as follows. Those cultures that demonstrate specific lytic
activity against peptide and endogenous targets are selected and 5x104 CD8* cells are added to a T25 flask containing the
following: 1x106 autologous PBMC per ml which have been peptide-pulsed with 10 pg/ml peptide for two hours at 37°C and
irradiated (4,200 rad); 2x10 5 irradiated (8,000 rad) EBV-transformed cells per ml RPMI-1640 containing 10%(v/v) human AB
serum, non-essential AA, sodium pyruvate, 25mM 2-ME, L-glutamine and gentamicin.
Immunogenicity of A2 supermotif-bearing peptides
A2-supermotif cross-reactive binding peptides are tested in the cellular assay for the ability to induce peptide-
specific CTL in normal individuals. In this analysis, a peptide Is typically considered to be an epitope if it induces peptide-
specific CTLs in at least individuals, and preferably, also recognizes the endogenously expressed peptide.
Immunogenicity can also be confirmed using PBMCs isolated from patients bearing a tumor that expresses
191P4D12(b). Briefly, PBMCs are isolated from patients, re-stimulated with peptide-pulsed monocytes and assayed for the
ability to recognize peptide-pulsed target cells as well as transfected cells endogenously expressing the antigen.
Evaluation of A*03/A11 immunoqenicity
HLA-A3 supermotif-bearing cross-reactive binding peptides are also evaluated for immunogenicity using
methodology analogous for that used to evaluate the immunogenicity of the HLA-A2 supermotif peptides.
Evaluation of B7 immunoqenicitv
Immunogenicity screening of the B7-supertype cross-reactive binding peptides identified as set forth herein are
confirmed in a manner analogous to the confirmation of A2-and A3-supermotif-bearing peptides.00
Peptides bearing other supermotifs/motifs, HLA-A1, HLA-A24 etc. are also confirmed using similar
S methodology
Example 15: Implementation of the Extended Supermotif to Improve the Binding Capacity of Native Epitopes byCreating Analogs
SHLA motifs and supermotifs (comprising primary and/or secondary residues) are useful in the identification and
preparation of highly cross-reactive native peptides, as demonstrated herein. Moreover, the definition of HLA motifs and
supermotifs also allows one to engineer highly cross-reactive epitopes by identifying residues within a native peptide
sequence which can be analoged to confer upon the peptide certain characteristics, e.g. greater cross-reactivity within the
S group of HLA molecules that comprise a supertype, and/or greater binding affinity for some or all of those HLA molecules.
Examples of analoging peptides to exhibit modulated binding affinity are set forth in this example.
00 Analoqing at Primary Anchor Residues
Peptide engineering strategies are implemented to further increase the cross-reactivity of the epitopes. ForS example, the main anchors of A2-supermotif-bearing peptides are altered, for example, to introduce a preferred L, I, V, or M
at position 2, and I or V at the C-terminus.
To analyze the cross-reactivity of the analog peptides, each engineered analog is initially tested for binding to theprototype A2 supertype allele A*0201, then, if A*0201 binding capacity Is maintained, for A2-supertype cross-reactivity.
Alternatively, a peptide is confirmed as binding one or all supertype members and then analoged to modulatebinding affinity to any one (or more) of the supertype members to add population coverage.
The selection of analogs for immunogenicity in a cellular screening analysis is typically further restricted by thecapacity of the parent wild type (WT) peptide to bind at least weakly, bind at an ICso of 5000nM or less, to three of moreA2 supertype alleles. The rationale for this requirement is that the WT peptides must be present endogenously in sufficientquantity to be biologically relevant. Analoged peptides have been shown to have Increased immunogenicity and cross-reactivity by T cells specific for the parent epitope (see, Parkhurst et al., J. Immunol. 157:2539, 1996; and Pogue et a.,Proc. Natl. Acad. Sci. USA 92:8166, 1995).
In the cellular screening of these peptide analogs, it is important to confirm that analog-specific CTLs are also ableto recognize the wild-type peptide and, when possible, target cells that endogenously express the epitope.
Analoqing of HLA-A3 and B7-supermotif-bearing peptides
Analogs of HLA-A3 supermotif-bearing epitopes are generated using strategies similar to those employed inanaloging HLA-A2 supermotif-bearing peptides. For example, peptides binding to 3/5 of the A3-supertype molecules areengineered at primary anchor residues to possess a preferred residue S, M, or A) at position 2.
The analog peptides are then tested for the ability to bind A*03 and A*11 (prototype A3 supertype alleles). Thosepeptides that demonstrate 500 nM binding capacity are then confirmed as having A3-supertype cross-reactivity.
Similarly to the A2- and A3- motif bearing peptides, peptides binding 3 or more B7-supertype alleles can beimproved, where possible, to achieve increased cross-reactive binding or greater binding affinity or binding half life. B7supermotif-bearing peptides are, for example, engineered to possess a preferred residue I, L, or F) at the C-terminalprimary anchor position, as demonstrated by Sidney et al. Immunol. 157:3480-3490, 1996).
Analoging at primary anchor residues of other motif and/or supermotif-bearing epitopes is performed in a likemanner.
The analog peptides are then be confirmed for immunogenicity, typically in a cellular screening assay. Again, it is
generally important to demonstrate that analog-specific CTLs are also able to recognize the wild-type peptide and, when
OO possible, targets that endogenously express the epitope.
O
CN Analoging at Secondary Anchor Residues
Moreover, HLA supermotifs are of value in engineering highly cross-reactive peptides andlor peptides that bind
HLA molecules with increased affinity by identifying particular residues at secondary anchor positions that are associated
with such properties. For example, the binding capacity of a B7 supermotif-bearing peptide with an F residue at position 1 is
S analyzed. The peptide is then analoged to, for example, substitute L for F at position 1. The analoged peptide is evaluated
for increased binding affinity, binding half life and/or increased cross-reactivity. Such a procedure identifies analoged
peptides with enhanced properties.
C Engineered analogs with sufficiently improved binding capacity or cross-reactivity can also be tested for
Immunogenicity in HLA-B7-transgenic mice, following for example, IFA immunization or lipopeptide immunization. Analoged
r1 peptides are additionally tested for the ability to stimulate a recall response using PBMC from patients with 191P4D12(b)-00
expressing tumors.
SOther analoging strategies
Another form of peptide analoging, unrelated to anchor positions, involves the substitution of a cysteine with cc-
amino butyric acid. Due to its chemical nature, cysteine has the propensity to form disulfide bridges and sufficiently alter the
peptide structurally so as to reduce binding capacity. Substitution of ct-amino butyric acid for cysteine not only alleviates this
problem, but has been shown to improve binding and crossbinding capabilities in some instances (see, the review by
Sette et al., In: Persistent Viral Infections, Eds. R. Ahmed and I. Chen, John Wiley Sons, England, 1999).
Thus, by the use of single amino acid substitutions, the binding properties and/or cross-reactivity of peptide ligands
for HLA supertype molecules can be modulated.
Example 16: Identification and confirmation of 191P4D12(b)-derived sequences with HLA-DR binding motifs
Peptide epitopes bearing an HLA class II supermotif or motif are identified and confirmed as outlined below using
methodology similar to that described for HLA Class I peptides.
Selection of HLA-DR-supermotif-bearinq epitopes.
To identify 191P4D12(b)-derived, HLA class II HTL epitopes, a 191P4D12(b) antigen is analyzed for the presence
of sequences bearing an HLA-DR-motif or supermotif. Specifically, 15-mer sequences are selected comprising a DR-
supermotif, comprising a 9-mer core, and three-residue N- and C-terminal flanking regions (15 amino acids total).
Protocols for predicting peptide binding to DR molecules have been developed (Southwood et al., J. Immunol.
160:3363-3373, 1998). These protocols, specific for individual DR molecules, allow the scoring, and ranking, of 9-mer core
regions. Each protocol not only scores peptide sequences for the presence of DR-supermotif primary anchors at
position 1 and position 6) within a 9-mer core, but additionally evaluates sequences for the presence of secondary anchors.
Using allele-specific selection tables (see, Southwood et al., ibid.), it has been found that these protocols efficiently
select peptide sequences with a high probability of binding a particular DR molecule. Additionally, it has been found that
performing these protocols in tandem, specifically those for DR1, DR4w4, and DR7, can efficiently select DR cross-reactive
peptides.
The 191P4D12(b)-derived peptides identified above are tested for their binding capacity for various common HLA-
DR molecules. All peptides are initially tested for binding to the DR molecules in the primary panel: DR1, DR4w4, and DR7.
Peptides binding at least two of these three DR molecules are then tested for binding to DR2w2 p1, DR2w2 02, DR6w19,
and DR9 molecules in secondary assays. Finally, peptides binding at least two of the four secondary panel DR molecules,
and thus cumulatively at least four of seven different DR molecules, are screened for binding to DR4w15, DR5w11, and00
S DR8w2 molecules in tertiary assays. Peptides binding at least seven of the ten DR molecules comprising the primary,
secondary, and tertiary screening assays are considered cross-reactive DR binders. 191P4D12(b)-derived peptides found to
S bind common HLA-DR alleles are of particular interest.
Selection of DR3 motif peptides
Because HLA-DR3 is an allele that is prevalent in Caucasian, Black, and Hispanic populations, DR3 binding
LC capacity is a relevant criterion In the selection of HTL epitopes. Thus, peptides shown to be candidates may also be
assayed for their DR3 binding capacity. However, in view of the binding specificity of the DR3 motif, peptides binding only to
DR3 can also be considered as candidates for inclusion in a vaccine formulation.
To efficiently identify peptides that bind DR3, target 191P4D12(b) antigens are analyzed for sequences carrying
CK1 one of the two DR3-specific binding motifs reported by Geluk et al. Immunol. 152:5742-5748, 1994). The corresponding
LC peptides are then synthesized and confirmed as having the ability to bind DR3 with an affinity of 1 LM or better, less than
0 1 pM. Peptides are found that meet this binding criterion and qualify as HLA class II high affinity binders.
SDR3 binding epitopes identified in this manner are included in vaccine compositions with DR supermotif-bearing
peptide epitopes.
Similarly to the case of HLA class I motif-bearing peptides, the class II motif-bearing peptides are analoged to
improve affinity or cross-reactivity. For example, aspartic acid at position 4 of the 9-mer core sequence is an optimal residue
for DR3 binding, and substitution for that residue often improves DR 3 binding.
Example 17: Immunogenicity of 191P4D12(b)-derived HTL epitopes
This example determines immunogenic DR supermotif- and DR3 motif-bearing epitopes among those identified
using the methodology set forth herein.
Immunogenicity of HTL epitopes are confirmed in a manner analogous to the determination of immunogenicity of
CTL epitopes, by assessing the ability to stimulate HTL responses and/or by using appropriate transgenic mouse models.
Immunogenicity is determined by screening for: in vitro primary induction using normal PBMC or recall responses from
patients who have 191P4D12(b)-expressing tumors.
Example 18: Calculation of phenotypic frequencies of HLA-supertypes in various ethnic backgrounds to determine
breadth of population coverage
This example illustrates the assessment of the breadth of population coverage of a vaccine composition comprised
of multiple epitopes comprising multiple supermotifs and/or motifs.
In order to analyze population coverage, gene frequencies of HLA alleles are determined. Gene frequencies for
each HLA allele are calculated from antigen or allele frequencies utilizing the binomial distribution formulae gf=1-(SQRT(1-
at)) (see, Sidney et al., Human Immunol. 45:79-93, 1996). To obtain overall phenotypic frequencies, cumulative gene
frequencies are calculated, and the cumulative antigen frequencies derived by the use of the inverse formula [af=1-(1-Cgf) 2
Where frequency data is not available at the level of DNA typing, correspondence to the serologically defined
antigen frequencies is assumed. To obtain total potential supertype population coverage no linkage disequilibrium is
assumed, and only alleles confirmed to belong to each of the supertypes are included (minimal estimates). Estimates of total
potential coverage achieved by inter-loci combinations are made by adding to the A coverage the proportion of the non-A
covered population that could be expected to be covered by the B alleles considered total=A+B*(1-A)). Confirmed
members of the A3-like supertype are A3, All, A31, A*3301, and A*6801. Although the A3-like supertype may also include
A34, A66, and A'7401, these alleles were not included in overall frequency calculations. Likewise, confirmed members of
the A2-like supertype family are A*0201, A*0202, A*0203, A*0204, A*0205, A*0206, A*0207, A*6802, and A*6901. Finally,
Sthe B7-like supertype-confirmed alleles are: B7, B83501-03, 851, B*5301, B*5401, B*5501-2, B*5601, B*6701, and B7801
0 (potentially also 8*1401, B*3504-06, 8*4201, and B*5602).
CPopulation coverage achieved by combining the A2-, A3- and B7-supertypes is approximately 86% in five major
S ethnic groups. Coverage may be extended by including peptides bearing the Al and A24 motifs. On average, Al is present
in 12% and A24 in 29% of the population across five different major ethnic groups (Caucasian, North American Black,
Chinese, Japanese, and Hispanic). Together, these alleles are represented with an average frequency of 39% in these
C same ethnic populations. The total coverage across the major ethnicities when Al and A24 are combined with the coverage
of the A2-, A3- and B7-supertype alleles is see, Table IV An analogous approach can be used to estimate
population coverage achieved with combinations of class II motif-bearing epitopes.
Immunogenicity studies in humans Bertoni et at., J. Clin. Invest. 100:503,1997; Doolan et al., Immunity 7:97,c 1997; and Threlkeld et J. Immunol. 159:1648, 1997) have shown that highly cross-reactive binding peptides are almost
CN always recognized as epitopes. The use of highly cross-reactive binding peptides is an important selection criterion in000 identifying candidate epitopes for inclusion in a vaccine that is immunogenic in a diverse population.
With a sufficient number of epitopes (as disclosed herein and from the art), an average population coverage is
predicted to be greater than 95% in each of five major ethnic populations. The game theory Monte Carlo simulation analysis,
which is known in the art (see Osborne, M.J. and Rubinstein, A. "A course in game theory" MIT Press, 1994), can be
used to estimate what percentage of the individuals in a population comprised of the Caucasian, North American Black,
Japanese, Chinese, and Hispanic ethnic groups would recognize the vaccine epitopes described herein. A preferred
percentage is 90%. A more preferred percentage is
Example 19: CTL Recognition Of Endogenously Processed Antigens After Priming
This example confirms that CTL induced by native or analoged peptide epitopes identified and selected as
described herein recognize endogenously synthesized, native antigens.
Effector cells isolated from transgenic mice that are immunized with peptide epitopes, for example HLA-A2
supermotif-bearing epitopes, are re-stimulated in vitro using peptide-coated stimulator cells. Six days later, effector cells are
assayed for cytotoxicity and the cell lines that contain peptide-specific cytotoxic activity are further re-stimulated. An
additional six days later, these cell lines are tested for cytotoxic activity on 51Cr labeled Jurkat-A2.1/Kb target cells in the
absence or presence of peptide, and also tested on 5'Cr labeled target cells bearing the endogenously synthesized antigen,i.e. cells that are stably transfected with 191P4D12(b) expression vectors.
The results demonstrate that CTL lines obtained from animals primed with peptide epitope recognize
endogenously synthesized 191P4D12(b) antigen. The choice of transgenic mouse model to be used for such an analysis
depends upon the epitope(s) that are being evaluated. In addilion to HLA-A*0201/Kb transgenic mice, several other
transgenic mouse models including mice with human All, which may also be used to evaluate A3 epitopes, and B7 alleles
have been characterized and others transgenic mice for HLA-A1 and A24) are being developed. HLA-DR1 and HLA-
DR3 mouse models have also been developed, which may be used to evaluate HTL epitdpes.
Example 20: Activity Of CTL-HTL Conjugated Epitopes In Transgenic Mice
This example illustrates the induction of CTLs and HTLs in transgenic mice, by use of a 191P4D12(b)-derived CTLand HTL peptide vaccine compositions. The vaccine composition used herein comprise peptides to be administered to apatient with a 191P4D12(b)-expressing tumor. The peptide composition can comprise multiple CTL and/or HTL epitopes.
The epitopes are identified using methodology as described herein. This example also illustrates that enhanced
S Immunogenicity can be achieved by inclusion of one or more HTL epitopes in a CTL vaccine composition; such a peptide
O composition can comprise an HTL epitope conjugated to a CTL epitope. The CTL epitope can be one that binds to multiple
HLA family members at an affinity of 500 nM or less, or analogs of that epitope. The peptides may be lipidated, if desired.
Immunization procedures: Immunization of transgenic mice is performed as described (Alexander et al., J.
Immunol. 159:4753-4761, 1997). For example, A2/Kb mice, which are transgenic for the human HLA A2.1 allele and are
used to confirm the immunogenicity of HLA-A*0201 motif- or HLA-A2 supermotif-bearing epitopes, and are primed
C1 subcutaneously (base of the tail) with a 0.1 ml of peptide in Incomplete Freund's Adjuvant, or if the peptide composition is a
lipidated CTL/HTL conjugate, in DMSO/saline, or if the peptide composition is a polypeptide, In PBS or Incomplete Freund's
S Adjuvant. Seven days after priming, splenocytes obtained from these animals are restimulated with syngenic irradiated LPS-
activated lymphoblasts coated with peptide.
Cell lines: Target cells for peptide-specific cytotoxicity assays are Jurkat cells transfected with the HLA-A2.1/Kb
CK chimeric gene Vitiello et al,, J. Exp. Med. 173:1007, 1991)
SIn vitro CTL activation: One week after priming, spleen cells (30x10 6 cells/flask) are co-cultured at 37*C with
O syngeneic, irradiated (3000 rads), peptide coated lymphoblasts (10x10 6 cells/flask) in 10 ml of culture medium/T25 flask.
After six days, effector cells are harvested and assayed for cytotoxic activity.
Assay for cytotoxic activity: Target cells (1.0 to 1.5x106) are incubated at 37°C in the presence of 200 pl of s5 Cr.
After 60 minutes, cells are washed three times and resuspended in R10 medium. Peptide is added where required at a
concentration of 1 pg/ml. For the assay, 104 slCr-labeled target cells are added to different concentrations of effector cells
(final volume of 200 pl) in U-bottom 96-well plates. After a six hour incubation period at 37°C, a 0.1 ml aliquot of supernatant
is removed from each well and radioactivity is determined in a Micromedic automatic gamma counter. The percent specific
lysis is determined by the formula: percent specific release 100 x (experimental release spontaneous release)/(maximum
release spontaneous release). To facilitate comparison between separate CTL assays run under the same conditions,
s Cr release data is expressed as lytic units/106 cells. One lytic unit is arbitrarily defined as the number of effector cells
required to achieve 30% lysis of 10,000 target cells in a six hour 51Cr release assay. To obtain specific lytic units/10 6 the
lytic units/106 obtained in the absence of peptide is subtracted from the lytic units/106 obtained in the presence of peptide.
For example, if 30% 5'Cr release is obtained at the effector target ratio of 50:1 5x10 5 effector cells for 10,000
targets) in the absence of peptide and 5:1 5x10 4 effector cells for 10,000 targets) in the presence of peptide, the specific
lytic units would be: [(1/50,000)-(1/500,000)] x 106 18 LU.
The results are analyzed to assess the magnitude of the CTL responses of animals injected with the immunogenic
CTL/HTL conjugate vaccine preparation and are compared to the magnitude of the CTL response achieved using, for
example, CTL epitopes as outlined above in the Example entitled "Confirmation of Immunogenicity." Analyses similar to this
may be performed to confirm the immunogenicity of peptide conjugates containing multiple CTL epitopes and/or multiple HTL
epitopes. In accordance with these procedures, It is found that a CTL response is induced, and concomitantly that an HTL
response is induced upon administration of such compositions.
Example 21: Selection of CTL and HTL epitopes for Inclusion in a 191P4D12(b)-specific vaccine.
This example illustrates a procedure for selecting peptide epitopes for vaccine compositions of the invention. The
peptides in the composition can be in the form of a nucleic acid sequence, either single or one or more sequences
minigene) that encodes peptide(s), or can be single and/or polyepitopic peptides.
The following principles are utilized when selecting a plurality of epitopes for inclusion in a vaccine composition.
Each of the following principles is balanced in order to make the selection.
Epitopes are selected which, upon administration, mimic immune responses that are correlated with 191P4D12(b)
clearance. The number of epitopes used depends on observations of patients who spontaneously clear 191P4D12(b). For
00 example, if it has been observed that patients who spontaneously clear 191P4D12(b)-expressing cells generate an immune
response to at least three epitopes from 191P4D12(b) antigen, then at least three epitopes should be included for HLA
class 1. A similar rationale is used to determine HLA class II epitopes.
Epitopes are often selected that have a binding affinity of an ICso of 500 nM or less for an HLA class I molecule, or
for class 11, an ICso of 1000 nM or less; or HLA Class I peptides with high binding scores from the BIMAS web site, at URL
0 bimas.dcrt.nih.govl.
In order to achieve broad coverage of the vaccine through out a diverse population, sufficient supermotif bearing
peptides, or a sufficient array of allele-specific motif bearing peptides, are selected to give broad population coverage. In
S one embodiment, epitopes are selected to provide at least 80% population coverage. A Monte Carlo analysis, a statistical
evaluation known in the art, can be employed to assess breadth, or redundancy, of population coverage.
O When creating polyepitopic compositions, or a minigene that encodes same, it is typically desirable to generate the
00 smallest peptide possible that encompasses the epitopes of interest. The principles employed are similar, if not the same, as
O those employed when selecting a peptide comprising nested epitopes. For example, a protein sequence for the vaccine
Cl composition is selected because It has maximal number of epitopes contained within the sequence, it has a high
concentration of epitopes. Epitopes may be nested or overlapping frame shifted relative to one another). For example,
with overlapping epitopes, two 9-mer epitopes and one 10-mer epitope can be present in a 10 amino acid peptide. Each
epitope can be exposed and bound by an HLA molecule upon administration of such a peptide. A multi-epitopic, peptide can
be generated synthetically, recombinantly, or via cleavage from the native source. Alternatively, an analog can be made of
this native sequence, whereby one or more of the epitopes comprise substitutions that alter the cross-reactivity and/or
binding affinity properties of the polyepitopic peptide. Such a vaccine composition is administered for therapeutic or
prophylactic purposes. This embodiment provides for the possibility that an as yet undiscovered aspect of immune system
processing will apply to the native nested sequence and thereby facilitate the production of therapeutic or prophylactic
immune response-inducing vaccine compositions. Additionally such an embodiment provides for the possibility of motif-
bearing epitopes for an HLA makeup that is presently unknown. Furthermore, this embodiment (absent the creating of any
analogs) directs the immune response to multiple peptide sequences that are actually present in 191P4D12(b), thus avoiding
the need to evaluate any junctional epitopes. Lastly, the embodiment provides an economy of scale when producing nucleic
acid vaccine compositions. Related to this embodiment, computer programs can be derived in accordance with principles in
the art, which identify in a target sequence, the greatest number of epitopes per sequence length.
A vaccine composition comprised of selected peptides, when administered, is safe, efficacious, and elicits an
immune response similar in magnitude to an immune response that controls or clears cells that bear or overexpress
191P4D12(b).
Example 22: Construction of "Minigene" Multi-Epltope DNA Plasmids
This example discusses the construction of a minigene expression plasmid. Minigene plasmids may, of course,
contain various configurations of B cell, CTL and/or HTL epitopes or epitope analogs as described herein.
A minigene expression plasmid typically includes multiple CTL and HTL peptide epitopes. In the present example,
HLA-A2, -A3, -B7 supermotif-bearing peptide epitopes and HLA-A1 and -A24 motif-bearing peptide epitopes are used in
conjunction with DR supermotif-bearing epitopes and/or DR3 epitopes. HLA class I supermotif or motif-bearing peptide
epitopes derived 191P4D12(b), are selected such that multiple supermotifs/motifs are represented to ensure broad
population coverage. Similarly, HLA class II epitopes are selected from 191P4D12(b) to provide broad population coverage,
i.e. both HLA DR-1-4-7 supermotif-bearing epitopes and HLA DR-3 motif-bearing epitopes are selected for inclusion in the
minigene construct The selected CTL and HTL epitopes are then incorporated into a minigene for expression in an00
S expression vector.
Such a construct may additionally include sequences that direct the HTL epitopes to the endoplasmic reticulum.
For example, the li protein may be fused to one or more HTL epitopes as described in the art, wherein the CLIP sequence of
the li protein is removed and replaced with an HLA class II epitope sequence so that HLA class II epitope is directed to the
endoplasmic reticulum, where the epitope binds to an HLA class II molecules.
This example illustrates the methods to be used for construction of a minigene-bearing expression plasmid. Other
expression vectors that may be used for minigene compositions are available and known to those of skill in the art.
The minigene DNA plasmid of this example contains a consensus Kozak sequence and a consensus murine kappa
Ig-light chain signal sequence followed by CTL and/or HTL epitopes selected in accordance with principles disclosed herein.
C-K The sequence encodes an open reading frame fused to the Myc and His antibody epitope tag coded for by the pcDNA 3.1
Myc-His vector.
00 Overlapping oligonucleotides that can, for example, average about 70 nucleotides in length with 15 nucleotide
0 overlaps, are synthesized and HPLC-purified. The oligonucleotides encode the selected peptide epitopes as well as
appropriate linker nucleotides, Kozak sequence, and signal sequence. The final multiepitope minigene is assembled by
extending the overlapping oligonucleotides in three sets of reactions using PCR. A Perkin/Elmer 9600 PCR machine is used
and a total of 30 cycles are performed using the following conditions: 95°C for 15 sec, annealing temperature (50 below the
lowest calculated Tm of each primer pair) for 30 sec, and 72*C for 1 min.
For example, a minigene is prepared as follows. For a first PCR reaction, 5 pig of each of two oligonucleotides are
annealed and extended: In an example using eight oligonucleotides, four pairs of primers, oligonucleotides 1+2, 3+4,
5+6, and 7+8 are combined in 100 p1 reactions containing Pfu polymerase buffer (1x= 10 mM KCL, 10 mM (NH4)2S04,
mM Tris-chloride, pH 8.75, 2 mM MgSO4, 0.1% Triton X-100, 100 gg/ml BSA), 0.25 mM each dNTP, and 2.5 U of Pfu
polymerase. The full-length dimer products are gel-purified, and two reactions containing the product of 1+2 and 3+4, and
the product of 5+6 and 7+8 are mixed, annealed, and extended for 10 cycles. Half of the two reactions are then mixed, and
cycles of annealing and extension carried out before flanking primers are added to amplify the full length product. The full-
length product is gel-purified and cloned into pCR-blunt (Invitrogen) and Individual clones are screened by sequencing.
Example 23: The Plasmid Construct and the Degree to Which It Induces Immunogenicity.
The degree to which a plasmid construct, for example a plasmid constructed in accordance with the previous
Example, is able to induce immunogenicity is confirmed in vitro by determining epitope presentation by APC following
transduction or transfection of the APC with an epitope-expressing nucleic acid construct. Such a study determines
"antigenicity" and allows the use of human APC. The assay determines the ability of the epitope to be presented by the APC
in a context that is recognized by a T cell by quantifying the density of epitope-HLA class I complexes on the cell surface.
Quantitation can be performed by directly measuring the amount of peptide eluted from the APC (see, Sijts et al., J.
Immunol. 156:683-692, 1996; Demotz etal., Nature 342:682-684, 1989); or the number of peptide-HLA class I complexes
can be estimated by measuring the amount of lysis or lymphokine release induced by diseased or transfected target cells,
and then determining the concentration of peptide necessary to obtain equivalent levels of lysis or lymphokine release (see,
Kageyama et al., J. Immunol. 154:567-576, 1995).
Alternatively, Immunogenicity is confirmed through in vivo injections into mice and subsequent in vitro assessment
of CTL and HTL activity, which are analyzed using cytotoxicity and proliferation assays, respectively, as detailed in
Alexander et al., Immunity 1:751-761, 1994.
For example, to confirm the capacity of a DNA minigene construct containing at least one HLA-A2 supermotif
peptide to induce CTLs in vivo, HLA-A2.1/Kb transgenic mice, for example, are immunized intramuscularly with 100 .g of
00 naked cDNA. As a means of comparing the level of CTLs Induced by cDNA immunization, a control group of animals is also
immunized with an actual peptide composition that comprises multiple epitopes synthesized as a single polypeptide as they
C would be encoded by the minigene.
Splenocytes from immunized animals are stimulated twice with each of the respective compositions (peptide
epitopes encoded in the minigene or the polyepitopic peptide), then assayed for peptide-specific cytotoxic activity in a 51Cr
release assay. The results indicate the magnitude of the CTL response directed against the A2-restricted epitope, thus
indicating the in vivo immunogenicity of the minigene vaccine and polyepitopic vaccine.
It is, therefore, found that the minigene elicits immune responses directed toward the HLA-A2 supermotif peptide
S epitopes as does the polyepitopic peptide vaccine. A similar analysis is also performed using other HLA-A3 and HLA-B7
transgenic mouse models to assess CTL induction by HLA-A3 and HLA-B7 motif or supermotif epitopes, whereby it is also
found that the minigene elicits appropriate immune responses directed toward the provided epitopes.
C To confirm the capacity of a class II epitope-encoding minigene to induce HTLs in vivo, DR transgenic mice, or for
those epitopes that cross react with the appropriate mouse MHC molecule, I-Ab-restricted mice, for example, are immunized
1 intramuscularly with 100 pg of plasmid DNA. As a means of comparing the level of HTLs induced by DNA immunization, a
group of control animals is also immunized with an actual peptide composition emulsified in complete Freund's adjuvant.
CD4+ T cells, i.e. HTLs, are purified from splenocytes of immunized animals and stimulated with each of the respective
compositions (peptides encoded in the minigene). The HTL response is measured using a 3H-thymidine incorporation
proliferation assay, (see, Alexander et al. Immunity 1:751-761, 1994). The results indicate the magnitude of the HTL
response, thus demonstrating the in vivo immunogenicity of the minigene.
DNA minigenes, constructed as described in the previous Example, can also be confirmed as a vaccine in
combination with a boosting agent using a prime boost protocol. The boosting agent can consist of recombinant protein
Barnett at al., Aids Res. and Human Retroviruses 14, Supplement 3:S299-S309, 1998) or recombinant vaccinia, for
example, expressing a minigene or DNA encoding the complete protein of interest (see, Hanke et al, Vaccine 16:439-
445,1998; Sedegah et al., Proc. Natl. Acad. Sci USA 95:7648-53, 1998; Hanke and McMichael, Immunol. Letters 66:177-
181, 1999; and Robinson etal., Nature Med. 5:526-34, 1999).
For example, the efficacy of the DNA minigene used in a prime boost protocol is initially evaluated in transgenic
mice. In this example, A2.1/Kb transgenic mice are immunized IM with 100 jig of a DNA minigene encoding the
'immunogenic peptides including at least one HLA-A2 supermotif-bearing peptide. After an incubation period (ranging from 3-
9 weeks), the mice are boosted IP with 107 pfu/mouse of a recombinant vaccinia virus expressing the same sequence
encoded by the DNA minigene. Control mice are immunized with 100 ig of DNA or recombinant vaccinia without the
minigene sequence, or with DNA encoding the minigene, but without the vaccinia boost. After an additional incubation
period of two weeks, splenocytes from the mice are immediately assayed for peptide-specific activity in an ELISPOT assay.
Additionally, splenocytes are stimulated in vitro with the A2-restricted peptide epitopes encoded in the minigene and
recombinant vaccinia, then assayed for peptide-specific activity In an alpha, beta and/or gamma IFN ELISA.
It Is found that the minigene utilized in a prime-boost protocol elicits greater immune responses toward the HLA-A2
supermotif peptides than with DNA alone. Such an analysis can also be performed using HLA-A11 or HLA-B7 transgenic
mouse models to assess CTL induction by HLA-A3 or HLA-B7 motif or supermotif epitopes. The use of prime boost
protocols in humans is described below in the Example entitled "Induction of CTL Responses Using a Prime Boost Protocol."
Example 24: Peptide Compositions for Prophylactic Uses
Vaccine compositions of the present invention can be used to prevent 191P4D12(b) expression in persons who are
at risk for tumors that bear this antigen. For example, a polyepitopic peptide epitope composition (or a nucleic acid
S comprising the same) containing multiple CTL and HTL epitopes such as those selected in the above Examples, which are
0 also selected to target greater than 80% of the population, is administered to individuals at risk for a 191P4D12(b)-
associated tumor.
For example, a peptide-based composition is provided as a single polypeptide that encompasses multiple epitopes.
The vaccine Is typically administered in a physiological solution that comprises an adjuvant, such as Incomplete Freunds
Ci Adjuvant. The dose of peptide for the initial immunization is from about 1 to about 50,000 pg, generally 100-5,000 pg, for a
kg patient. The initial administration of vaccine is followed by booster dosages at 4 weeks followed by evaluation of the
S magnitude of the immune response in the patient, by techniques that determine the presence of epitope-specific CTL
populations in a PBMC sample. Additional booster doses are administered as required. The composition is found to be both
C= safe and efficacious as a prophylaxis against 191P4D12(b)-associated disease.
SAlternatively, a composition typically comprising transfecting agents is used for the administration of a nucleic acid-
00 based vaccine in accordance with methodologies known in the art and disclosed herein.
Example 25: Polyepitopic Vaccine Compositions Derived from Native 191P4012(b) Sequences
A native 191P4D12(b) polyprotein sequence is analyzed, preferably using computer algorithms defined for each
class I and/or class II supermotif or motif, to identify "relatively short" regions of the polyprotein that comprise multiple
epitopes. The "relatively short" regions are preferably less in length than an entire native antigen. This relatively short
sequence that contains multiple distinct or overlapping, "nested" epitopes can be used to generate a minigene construct.
The construct is engineered to express the peptide, which corresponds to the native protein sequence. The "relatively short"
peptide is generally less than 250 amino acids in length, often less than 100 amino acids in length, preferably less than
amino acids in length, and more preferably less than 50 amino acids in length. The protein sequence of the vaccine
composition is selected because it has maximal number of epitopes contained within the sequence, it has a high
concentration of epitopes. As noted herein, epitope motifs may be nested or overlapping frame shifted relative to one
another). For example, with overlapping epitopes, two 9-mer epitopes and one 10-mer epitope can be present in a 10 amino
acid peptide. Such a vaccine composition is administered for therapeutic or prophylactic purposes.
The vaccine composition will include, for example, multiple CTL epitopes from 191P4D12(b) antigen and at least
one HTL epitope. This polyepitopic native sequence is administered either as a peptide or as a nucleic acid sequence which
encodes the peptide. Alternatively, an analog can be made of this native sequence, whereby one or more of the epitopes
comprise substitutions that alter the cross-reactivity and/or binding affinity properties of the polyepitopic peptide.
The embodiment of this example provides for the possibility that an as yet undiscovered aspect of immune system
processing will apply to the native nested sequence and thereby facilitate the production of therapeutic or prophylactic
immune response-inducing vaccine compositions. Additionally, such an embodiment provides for the possibility of motif-
bearing epitopes for an HLA makeup(s) that is presently unknown. Furthermore, this embodiment (excluding an analoged
embodiment) directs the immune response to multiple peptide sequences that are actually present in native 191P4D12(b),
thus avoiding the need to evaluate any junctional epitopes. Lastly, the embodiment provides an economy of scale when
producing peptide or nucleic acid vaccine compositions.
Related to this embodiment, computer programs are available in the art which can be used to identify in a target
sequence, the greatest number of epitopes per sequence length.
Example 26: Polyepitopic Vaccine Compositions from Multiple Antigens
The 191P4D12(b) peptide epitopes of the present invention are used in conjunction with epitopes from other target
tumor-associated antigens, to create a vaccine composition that is useful for the prevention or treatment of cancer that
00 expresses 191P4D12(b) and such other antigens. For example, a vaccine composition can be provided as a single
O polypeptide that incorporates multiple epitopes from 191P4D12(b) as well as tumor-associated antigens that are often
C1 expressed with a target cancer associated with 191P4D12(b) expression, or can be administered as a composition
comprising a cocktail of one or more discrete epitopes. Alternatively, the vaccine can be administered as a minigene
S construct or as dendritic cells which have been loaded with the peptide epitopes in vitro.
S Example 27: Use of peptides to evaluate an immune response
Peptides of the invention may be used to analyze an immune response for the presence of specific antibodies,
S CTL or HTL directed to 191P4D12(b). Such an analysis can be performed in a manner described by Ogg et al., Science
CKl 279:2103-2106, 1998. In this Example, peptides in accordance with the invention are used as a reagent for diagnostic or
prognostic purposes, not as an immunogen.
In this example highly sensitive human leukocyte antigen tetrameric complexes ("tetramers") are used for a cross-00
sectional analysis of, for example, 191P4D12(b) HLA-A*0201-specific CTL frequencies from HLA A*0201-positive individuals
c- at different stages of disease or following immunization comprising a 191P4D12(b) peptide containing an A*0201 motif.
Tetrameric complexes are synthesized as described (Musey et al., N. Engl. J. Med. 337:1267, 1997). Briefly, purified HLA
heavy chain (A*0201 in this example) and p2-microglobulin are synthesized by means of a prokaryotic expression system.
The heavy chain is modified by deletion of the transmembrane-cytosolic tail and COOH-terminal addition of a sequence
containing a BirA enzymatic biotinylation site. The heavy chain, p2-microglobulin, and peptide are refolded by dilution. The
refolded product is isolated by fast protein liquid chromatography and then biotinylated by BirA in the presence of
biotin (Sigma, St. Louis, Missouri), adenosine 5' triphosphate and magnesium. Streptavidin-phycoerythrin conjugate is
added in a 1:4 molar ratio, and the tetrameric product is concentrated to 1 mg/ml. The resulting product is referred to as
tetramer-phycoerythrin.
For the analysis of patient blood samples, approximately one million PBMCs are centrifuged at 300g for 5 minutes
and resuspended in 50 pl of cold phosphate-buffered saline. Tri-color analysis is performed with the tetramer-phycoerythrin,
along with anti-CD8-Tricolor, and anti-CD38. The PBMCs are incubated with tetramer and antibodies on ice for 30 to 60 min
and then washed twice before formaldehyde fixation. Gates are applied to contain >99.98% of control samples. Controls for
the tetramers include both A*0201-negative individuals and A*0201-positive non-diseased donors. The percentage of cells
stained with the tetramer is then determined by flow cytometry. The results indicate the number of cells in the PBMC sample
that contain epitope-restricted CTLs, thereby readily indicating the extent of immune response to the 191P4D12(b) epitope,
and thus the status of exposure to 191P4D12(b), or exposure to a vaccine that elicits a protective or therapeutic response.
Example 28: Use of Peptide Epitopes to Evaluate Recall Responses
The peptide epitopes of the invention are used as reagents to evaluate T cell responses, such as acute or recall
responses, in patients. Such an analysis may be performed on patients who have recovered from 191P4D12(b)-associated
disease or who have been vaccinated with a 191P4D12(b) vaccine.
For example, the class I restricted CTL response of persons who have been vaccinated may be analyzed. The
vaccine may be any 191P4D12(b) vaccine. PBMC are collected from vaccinated individuals and HLA typed. Appropriate
peptide epitopes of the invention that, optimally, bear supermotifs to provide cross-reactivity with multiple HLA supertype
family members, are then used for analysis of samples derived from Individuals who bear that HLA type.
PBMC from vaccinated individuals are separated on Ficoll-Histopaque density gradients (Sigma Chemical Co., St.
Louis, MO), washed three times in HBSS (GIBCO Laboratories), resuspended in RPMI-1640 (GIBCO Laboratories)
O supplemented with L-glutamine (2mM), penicillin (50U/ml), streptomycin (50 pg/ml), and Hepes (10mM) containing
c heat-inactivated human AB serum (complete RPMI) and plated using microculture formats. A synthetic peptide comprising
S an epitope of the invention is added at 10 .g/ml to each well and HBV core 128-140 epltope is added at 1 p.g/ml to each well
as a source of T cell help during the first week of stimulation.
In the microculture format, 4 x 105 PBMC are stimulated with peptide in 8 replicate cultures In 96-well round bottom
r plate In 100 pl/well of complete RPMI. On days 3 and 10, 100 pl of complete RPMI and 20 U/ml final concentration of rlL-2
are added to each well. On day 7 the cultures are transferred into a 96-well flat-bottom plate and restimulated with peptide,
r- rlL-2 and 10s irradiated (3,000 rad) autologous feeder cells. The cultures are tested for cytotoxlc activity on day 14. A
N positive CTL response requires two or more of the eight replicate cultures to display greater than 10% specific 61Cr release,
based on comparison with non-diseased control subjects as previously described (Rehermann, et al., Nature Med.
C 2:1104,1108, 1996; Rehermann et al., J. Clin. Invest. 97:1655-1665, 1996; and Rehermann et a. J. Clin. Invest. 98:1432-000 1440, 1996).
Target cell lines are autologous and allogeneic EBV-transformed B-LCL that are either purchased from the
American Society for Histocompatibility and Immunogenetics (ASHI, Boston, MA) or established from the pool of patients as
described (Guilhot, et al. J. Virol. 66:2670-2678, 1992).
Cytotoxicity assays are performed in the following manner. Target cells consist of either allogeneic HLA-matched
or autologous EBV-transformed B lymphoblastoid cell line that are incubated overnight with the synthetic peptide epitope of
the invention at 10 pM, and labeled with 100 iCi of S5 Cr (Amersham Corp., Arlington Heights, IL) for 1 hour after which they
are washed four times with HBSS.
Cytolytic activity is determined in a standard 4-h, split well s5 Cr release assay using U-bottomed 96 well plates
containing 3,000 targets/well. Stimulated PBMC are tested at effector/target ratios of 20-50:1 on day 14. Percent
cytotoxicity is determined from the formula: 100 x [(experimental release-spontaneous release)/maximum release-
spontaneous release)]. Maximum release is determined by lysis of targets by detergent Triton X-100; Sigma Chemical
Co., St. Louis, MO). Spontaneous release is <25% of maximum release for all experiments.
The results of such an analysis indicate the extent to which HLA-restricted CTL populations have been stimulated
by previous exposure to 191P4D12(b) or a 191P4D12(b) vaccine.
Similarly, Class II restricted HTL responses may also be analyzed. Purified PBMC are cultured in a 96-well flat
bottom plate at a density of 1.5x10 5 cells/well and are stimulated with 10 ig/ml synthetic peptide of the Invention, whole
191P4D12(b) antigen, or PHA. Cells are routinely plated in replicates of 4-6 wells for each condition. After seven days of
culture, the medium is removed and replaced with fresh medium containing 10U/ml IL-2. Two days later, 1 pCi 3H-thymldine
is added to each well and incubation is continued for an additional 18 hours. Cellular DNA is then harvested on glass fiber
mats and analyzed for 3H-thymidine incorporation. Antigen-specific T cell proliferation is calculated as the ratio of 3H-
thymidine incorporation in the presence of antigen divided by the 3H-thymidine incorporation in the absence of antigen.
Example 29: Induction Of Specific CTL Response In Humans
A human clinical trial for an immunogenic composition comprising CTL and HTL epitopes of the invention is set up
as an IND Phase I, dose escalation study and carried out as a randomized, double-blind, placebo-controlled trial. Such a
trial is designed, for example, as follows:
A total of about 27 individuals are enrolled and divided into 3 groups:
Group I: 3 subjects are injected with placebo and 6 subjects are injected with 5 pg of peptide composition;
Group II: 3 subjects are injected with placebo and 6 subjects are injected with 50 pg peptide composition;
Group III: 3 subjects are Injected with placebo and 6 subjects are injected with 500 pg of peptide composition.
00 After 4 weeks following the first injection, all subjects receive a booster inoculation at the same dosage.O
0The endpoints'measured in this study relate to the safety and tolerability of the peptide composition as well as its
immunogenicity. Cellular immune responses to the peptide composition are an index of the intrinsic activity of this the
t peptide composition, and can therefore be viewed as a measure of biological efficacy. The following summarize the clinical
and laboratory data that relate to safety and efficacy endpoints.
SSafety: The incidence of adverse events is monitored in the placebo and drug treatment group and assessed in
terms of degree and reversibility.
Evaluation of Vaccine Efficacy: For evaluation of vaccine efficacy, subjects are bled before and after injection.
Peripheral blood mononuclear cells are isolated from fresh heparinized blood by Ficoll-Hypaque density gradient
centrifugation, aliquoted In freezing media and stored frozen. Samples are assayed for CTL and HTL activity.
SThe vaccine is found to be both safe and efficacious.
00
Example 30: Phase II Trials In Patients Expressing 191P4D12(b)
r Phase II trials are performed to study the effect of administering the CTL-HTL peptide compositions to patients
having cancer that expresses 191P4D12(b). The main objectives of the trial are to determine an effective dose and regimen
for inducing CTLs in cancer patients that express 191P4D12(b), to establish the safety of inducing a CTL and HTL response
in these patients, and to see to what extent activation of CTLs improves the clinical picture of these patients, as manifested,
by the reduction and/or shrinking of lesions. Such a study is designed, for example, as follows:
The studies are performed in multiple centers. The trial design is an open-label, uncontrolled, dose escalation
protocol wherein the peptide composition is administered as a single dose followed six weeks later by a single booster shot
of the same dose. The dosages are 50, 500 and 5,000 micrograms per injection. Drug-associated adverse effects (severity
and reversibility) are recorded.
There are three patient groupings. The first group is injected with 50 micrograms of the peptide composition and
the second and third groups with 500 and 5,000 micrograms of peptide composition, respectively. The patients within each
group range in age from 21-65 and represent diverse ethnic backgrounds. All of them have a tumor that expresses
191P4D12(b).
Clinical manifestations or antigen-specific T-cell responses are monitored to assess the effects of administering the
peptide compositions. The vaccine composition is found to be bdth safe and efficacious in the treatment of 191P4D12(b)-
associated disease.
Example 31: Induction of CTL Responses Using a Prime Boost Protocol
A prime boost protocol similar in its underlying principle to that used to confirm the efficacy of a DNA vaccine in
transgenic mice, such as described above in the Example entitled "The Plasmid Construct and the Degree to Which It
Induces Immunogenicity," can also be used for the administration of the vaccine to humans. Such a vaccine regimen can
Include an initial administration of, for example, naked DNA followed by a boost using recombinant virus encoding the
vaccine, or recombinant protein/polypeptide or a peptide mixture administered in an adjuvant.
For example, the initial immunization may be performed using an expression vector, such as that constructed in the
Example entitled "Construction of "Minigene" Multi-Epitope DNA Plasmids" in the form of naked nucleic acid administered IM
(or SC or ID) in the amounts of 0.5-5 mg at multiple sites. The nucleic acid (0.1 to 1000 pg) can also be administered using
a gene gun. Following an incubation period of 3-4 weeks, a booster dose is then administered. The booster can be
recombinant fowlpox virus administered at a dose of 5-10 7 to 5x109 pfu. An altemative recombinant virus, such as an MVA,
canarypox, adenovirus, or adeno-associated virus, can also be used for the booster, or the polyepitopic protein or a mixture
0 of the peptides can be administered. For evaluation of vaccine efficacy, patient blood samples are obtained before
S immunization as well as at intervals following administration of the initial vaccine and booster doses of the vaccine.
S Peripheral blood mononuclear cells are isolated from fresh heparinized blood by Ficoll-Hypaque density gradient
centrifugation, aliquoted in freezing media and stored frozen. Samples are assayed for CTL and HTL activity.
Analysis of the results indicates that a magnitude of response sufficient to achieve a therapeutic or protective
immunity against 191P4D12(b) is generated.
Example 32: Administration of Vaccine Compositions Using Dendritic Cells (DC)
Vaccines comprising peptide epitopes of the invention can be administered using APCs, or "professional" APCs
CN such as DC. In this example, peptide-pulsed DC are administered to a patient to stimulate a CTL response in vivo. In this
C method, dendritic cells are isolated, expanded, and pulsed with a vaccine comprising peptide CTL and HTL epitopes of the
00 invention. The dendritic cells are infused back into the patient to elicit CTL and HTL responses in vivo. The induced CTL
0 and HTL then destroy or facilitate destruction, respectively, of the target cells that bear the 191P4D12(b) protein from which
the epitopes in the vaccine are derived.
For example, a cocktail of epitope-comprising peptides is administered ex vivo to PBMC, or isolated DC therefrom.
A pharmaceutical to facilitate harvesting of DC can be used, such as ProgenipoietinTM (Monsanto, St. Louis, MO) or GM-
CSF/IL-4. After pulsing the DC with peptides, and prior to reinfusion into patients, the DC are washed to remove unbound
peptides.
As appreciated clinically, and readily determined by one of skill based on clinical outcomes, the number of DC
reinfused into the patient can vary (see, Nature Med. 4:328, 1998; Nature Med. 2:52, 1996 and Prostate 32:272, 1997).
Although 2-50 x 106 DC per patient are typically administered, larger number of DC, such as 107 or 108 can also be provided.
Such cell populations typically contain between 50-90% DC.
In some embodiments, peptide-loaded PBMC are injected into patients without purification of the DC. For
example, PBMC generated after treatment with an agent such as ProgenipoietinTM are injected into patients without
purification of the DC. The total number of PBMC that are administered often ranges from 108 to 1010. Generally, the cell
doses injected into patients is based on the percentage of DC in the blood of each patient, as determined, for example, by
immunofluorescence analysis with specific anti-DC antibodies. Thus, for example, if ProgenipoletinTM mobilizes 2% DC in
the peripheral blood of a given patient, and that patient is to receive 5 x 106 DC, then the patient will be injected with a total of
x 108 peptide-loaded PBMC. The percent DC mobilized by an agent such as ProgenipoietinTM is typically estimated to
be between 2-10%, but can vary as appreciated by one of skill in the art.
Ex vivo activation of CTLHTL responses
Altematively, ex vivo CTL or HTL responses to 191P4D12(b) antigens can be induced by incubating, in tissue
culture, the patient's, or genetically compatible, CTL or HTL precursor cells together with a source of APC, such as DC, and
immunogenic peptides. After an appropriate incubation time (typically about 7-28 days), in which the precursor cells are
activated and expanded into effector cells, the cells are infused into the patient, where they will destroy (CTL) or facilitate
destruction (HTL) of their specific target cells, tumor cells.
Example 33: An Alternative Method of Identifying and Confirming Motif-Bearing Peptides
Another method of identifying and confirming motif-bearing peptides is to elute them from cells bearing defined
MHC molecules. For example, EBV transformed B cell lines used for tissue typing have been extensively characterized to
determine which HLA molecules they express. In certain cases these cells express only a single type of HLA molecule.
These cells can be transfected with nucleic acids that express the antigen of interest, e.g. 191P4D12(b). Peptides produced
00 by endogenous antigen processing of peptides produced as a result of transfection will then bind to HLA molecules within the
cell and be transported and displayed on the cell's surface. Peptides are then eluted from the HLA molecules by exposure to
CK1 mild acid conditions and their amino acid sequence determined, by mass spectral analysis Kubo et al., J.
Immunol. 152:3913,1994). Because the majority of peptides that bind a particular HLA molecule are motif-bearing, this is an
alternative modality for obtaining the motif-bearing peptides correlated with the particular HLA molecule expressed on the
cell.
Alternatively, cell lines that do not express endogenous HLA molecules can be transfected with an expression
construct encoding a single HLA allele. These cells can then be used as described, they can then be transfected with
S nucleic acids that encode 191P4D12(b) to isolate peptides corresponding to 191P4D12(b) that have been presented on the
CKl cell surface. Peptides obtained from such an analysis will bear motif(s) that correspond to binding to the single HLA allele
that is expressed in the cell.
OC) As appreciated by one in the art, one can perform a similar analysis on a cell bearing more than one HLA allele00
and subsequently determine peptides specific for each HLA allele expressed. Moreover, one of skill would also recognize
C=K that means other than transfection, such as loading with a protein antigen, can be used to provide a source of antigen to the
cell.
Example 34: Complementary Polynucleotldes
Sequences complementary to the 191P4D12(b)-encoding sequences, or any parts thereof, are used to detect,
decrease, or inhibit expression of naturally occurring 191P4D12(b). Although use of oligonucleotides comprising from about
to 30 base pairs is described, essentially the same procedure is used with smaller or with larger sequence fragments.
Appropriate oligonucleotides are designed using, OLIGO 4.06 software (National Biosciences) and the coding sequence
of 191P4D12(b). To inhibit transcription, a complementary oligonucleotide is designed from the most unique 5' sequence
and used to prevent promoter binding to the coding sequence. To inhibit translation, a complementary oligonucleotide is
designed to prevent ribosomal binding to a 191P4D12(b)-encoding transcript.
Example 35: Purification of Naturally-occurring or Recombinant 191P4D12(b) Using 191P4D12(b)-Specific
Antibodies
Naturally occurring or recombinant 191P4D12(b) is substantially purified by immunoaffinity chromatography using
antibodies specific for 191P4D12(b). An immunoaffinity column is constructed by covalently coupling anti-191P4D12(b)
antibody to an activated chromatographic resin, such as CNBr-activated SEPHAROSE (Amersham Pharmacia Biotech).
After the coupling, the resin is blocked and washed according to the manufacturers instructions.
Media containing 191P4D12(b) are passed over the immunoaffinity column, and the column is washed under
conditions that allow the preferential absorbance of 191P4D12(b) high ionic strength buffers in the presence of
detergent). The column is eluted under conditions that disrupt antibody/191P4D12(b) binding a buffer of pH 2 to pH 3,
or a high concentration of a chaotrope, such as urea or thiocyanate ion), and GCR.P is collected.
Example 36: Identification of Molecules Which Interact with 191P4D12(b)
191P4D12(b), or biologically active fragments thereof, are labeled with 121 1 Bolton-Hunter reagent. (See, e.g.,
Bolton et at. (1973) Biochem. J. 133:529.) Candidate molecules previously arrayed in the wells of a multi-well plate are
incubated with the labeled 191P4D12(b), washed, and any wells with labeled 191P4D12(b) complex are assayed. Data
obtained using different concentrations of 191P4D12(b) are used to calculate values for the number, affinity, and association
of 191P4D12(b) with the candidate molecules.00
S Example 37: In Vivo Assay for 191P4D12(b) Tumor Growth Promotion
S The effect of the 191P4D12(b) protein on tumor cell growth is evaluated in vivo by evaluating tumor development
and growth of cells expressing or lacking 191P4D12(b). For example, SCID mice are Injected subcutaneously on each flank
with 1 x 106 of either 3T3, prostate PC3 cells), bladder UM-UC3 cells), kidney CaKI cells), or lung A427
cells) cancer cell lines containing tkNeo empty vector or 191P4D12(b). At least two strategies may be used: Constitutive
191P4D12(b) expression under regulation of a promoter such as a constitutive promoter obtained from the genomes of
viruses such as polyoma virus, fowlpox virus (UK 2,211,504 published 5 July 1989), adenovirus (such as Adenovirus 2),
bovine papilloma virus, avian sarcoma virus, cytomegalovirus, a retrovirus, hepatitis-B virus and Simian Virus 40 (SV40), or
from heterologous mammalian promoters, the actin promoter or an immunoglobulin promoter, provided such promoters
are compatible with the host cell systems, and Regulated expression under control of an inducible vector system, such as
00 ecdysone, tetracycline, etc., provided such promoters are compatible with the host cell systems. Tumor volume Is then
monitored by caliper measurement at the appearance of palpable tumors and followed over time to determine if
C 191P4D12(b)-expressing cells grow at a faster rate and whether tumors produced by 191P4D12(b)-expressing cells
demonstrate characteristics of altered aggressiveness enhanced metastasis, vascularization, reduced responsiveness
to chemotherapeutic drugs).
Additionally, mice can be implanted with 1 x 105 of the same cells orthotopically to determine if 191P4D12(b) has
an effect on local growth in the prostate, and whether 191P4D12(b) affects the ability of the cells to metastasize, specifically
to lymph nodes, and bone (Miki T et al, Oncol Res. 2001;12:209; Fu X et al, Int J Cancer. 1991, 49:938). The effect of
191P4D12(b) on bone tumor formation and growth may be assessed by injecting tumor cells intratiblally.
The assay is also useful to determine the 191P4D12(b) inhibitory effect of candidate therapeutic compositions,
such as for example, 191P4D12(b) intrabodies, 191P4D12(b) antisense molecules and ribozymes.
Example 38: 191P4D12(b) Monoclonal Antibody-mediated Inhibition of Tumors In Vivo
The significant expression of 191 P4D12(b) in cancer tissues and surface localization, together with its restrictive
expression in normal tissues makes 191P4D12(b) a good target for antibody therapy. Similarly, 191P4D12(b) is a target for
T cell-based immunotherapy. Thus, the therapeutc efficacy of anti-191P4D12(b) mAbs in human cancer xenograft mouse
models, including prostate, lung, bladder, kidney and other -191P4D12(b)cancers listed in table 1, is evaluated by using
recombinant cell lines such as PC3-191P4D12(b), UM-UC3-191P4D12(b), CaKi-191P4D12(b), A427-191P4D12(b) and
3T3-191P4D12(b) (see, Kaighn, et Invest Urol, 1979. 17(1): 16-23), as well as human prostate, kidney and
bladder xenograft models such as LAPC 9AD, AGS-K3 and AGS-B1 (Saffran et al PNAS 1999,10:1073-1078).
Antibody efficacy on tumor growth and metastasis formation is studied, in a mouse orthotopic prostate,
kidney, bladder, and lung cancer xenograft models. The antibodies can be unconjugated, as discussed in this Example, or
can be conjugated to a therapeutic modality, as appreciated in the art. Anti-191P4D12(b) mAbs inhibit formation of tumors in
prostate kidney, bladder and lung xenografts. Anti-191P4012(b) mAbs also retard the growth of established orthotopic
tumors and prolonged survival of tumor-bearing mice. These results indicate the utility of anti-191P4D12(b) mAbs in the
treatment of local and advanced stages several solid tumors. (See, Saffran, et al., PNAS 10:1073-1078 or world
wide web URL pnas.org/cgildoi/10.1073/pnas.051624698).
Administration of the anti-191 P4D12(b) mAbs led to retardation of established orthotoplc tumor growth and
inhibition of metastasis to distant sites, resulting in a significant prolongation in the survival of tumor-bearing mice. These
studies indicate that 191P4D12(b) as an attractive target for immunotherapy and demonstrate the therapeutic potential of
anti-191P4D12(b) mAbs for the treatment of local and metastatic prostate cancer. This example indicates that unconjugated
0 191P4D12(b) monodonal antibodies are effective to inhibit the growth of human prostate, kidney, bladder and lung tumor
O xenografts grown In SCID mice; accordingly a combination of such efficacious monoclonal antibodies is also effective.
CK Tumor Inhibition using multiple unconjugated 191P4D12(b) mAbs
Materials and Methods
191P4D12(b) Monoclonal Antibodies:
Monoclonal antibodies are raised against 191P4D12(b) as described in the Example entitled "Generation of
1 191P4D12(b) Monoclonal Antibodies (mAbs)." The antibodies are characterized by ELISA, Western blot, FACS, and
immunoprecipitation for their capacity to bind 191P4D12(b). Epitope mapping data for the anti-191P4D12(b) mAbs, as
determined by ELISA and Western analysis, recognize epitopes on the 191P4D12(b) protein. Immunohistochemical analysis
C of prostate, kidney, bladder and lung cancer tissues and cells with these antibodies is performed.
SThe monoclonal antibodies are purified from ascites or hybridoma tissue culture supernatants by Protein-G
Cr Sepharose chromatography, dialyzed against PBS, filter sterilized, and stored at -20°C. Protein determinations are00
performed by a Bradford assay (Bio-Rad, Hercules, CA). A therapeutic monoclonal antibody or a cocktail comprising a
mixture of individual monoclonal antibodies is prepared and used for the treatment of mice receiving subcutaneous or
orthotopic injections of PC3, UM-UC3, CaKi and A427 tumor xenografts.
Cell Lines and Xenografts
The cancer cell lines, PC3, UM-UC3, CaKi, and A427 cell line as well as the fibroblast line NIH 3T3 (American
Type Culture Collection) are maintained in RPMI (PC3) and DMEM (UM-UC3, CaKi, and A427, 3T3) respectively,
supplemented with L-glutamine and 10% FBS.
PC3-191P4D12(b), UM-UC3-191P4D12(b), CaKi-191P4D12(b), A427-191P4D12(b) and 3T3-191P4D12(b) cell populations
are generated by retroviral gene transfer as described in Hubert, et al., Proc Natl Acad Sci U S A, 1999. 96(25): 14523.
The LAPC-9 xenograft, which expresses a wild-type androgen receptor and produces prostate-specific antigen (PSA), is
passaged in 6- to 8-week-old male ICR-severe combined immunodeficient (SCID) mice (Taconic Farms) by s.c. trocar
implant (Craft, et al., Nat Med. 1999, 5:280). Single-cell suspensions of LAPC-9 tumor cells are prepared as described in
Craft, et al. Similarly, kidney (AGS-K3) and bladder (AGS-B1) patient-derived xenografts are passaged in 6- to 8-week-old
male ICR-SCID mice.
Xenograft Mouse Models.
Subcutaneous tumors are generated by injection of 2 x 10 6 cancer cells mixed at a 1:1 dilution with Matrigel
(Collaborative Research) in the right flank of male SCID mice. To test antibody efficacy on tumor formation, i.e. antibody
injections are started on the same day as tumor-cell injections. As a control, mice are injected with either purified mouse IgG
(ICN) or PBS; or a purified monoclonal antibody that recognizes an irrelevant antigen not expressed in human cells. In
preliminary studies, no difference is found between mouse IgG or PBS on tumor growth. Tumor sizes are determined by
caliper measurements, and the tumor volume is calculated as length x width x height Mice with Subcutaneous tumors
greater than 1.5 cm in diameter are sacrificed.
Orthotopic injections are performed under anesthesia by using ketamine/xylazine. For prostate orthotopic studies, an
incision is made through the abdomen to expose the prostate and LAPC or PC3 tumor cells (5 x 105) mixed with Matrigel are
injected Into the prostate capsule in a 10-pl volume. To monitor tumor growth, mice are palpated and blood is collected on a
weekly basis to measure PSA levels. For kidney orthotopic models,.an incision is made through the abdominal muscles to
expose the kidney. AGS-K3 cells mixed with Matrigel are injected under the kidney capsule. The mice are segregated into
groups for the appropriate treatments, with anti-191P4D12(b) or control mAbs being injected i.p.00
SAnti-191P4D12(b) mAbs Inhibit Growth of 191P4D12(b)-Expressing Xenoqraft-Cancer Tumors
The effect of anti-191P4D12(b) mAbs on tumor formation is tested by using cell line PC3, UM-UC3, CaKI, A427, and
3T3) and patient-derived tumor LAPC9, AGS-K3, AGS-B1) orthotopic models. As compared with the s.c. tumor model,
the orthotopic model, which requires injection of tumor cells directly in the mouse organ, such as prostate, bladder, kidney or
S lung, results in a local tumor growth, development of metastasis in distal sites, deterioration of mouse health, and
subsequent death (Saffran, et al., PNAS supra). The features make the orthotoplc model more representative of human
disease progression and allowed us to follow the therapeutic effect of mAbs on clinically relevant end points.
For example, tumor cells are injected into the mouse prostate, and 2 days later, the mice are segregated into two groups and
CK" treated with either: a) 200-500pg, of anti-191P4D12(b) Ab, or b) PBS three times per week for two to five weeks.
A major advantage of the orthotopic cancer models is the ability to study the development of metastases.0 0 Formation of metastasis in mice bearing established orthotopic tumors is studies by IHC analysis on lung sections using an
0 antibody against a tumor-specific cell-surface protein such as anti-CK20 for prostate cancer (Lin S et al, Cancer Detect Prev.
2001;25:202).
Another advantage of xenograft cancer models is the ability to study neovascularization and angiogenesis. Tumor
growth is partly dependent on new blood vessel development. Although the capillary system and developing blood network
is of host origin, the initiation and architecture of the neovascular is regulated by the xenograft tumor (Davidoff AM et al, Clin
Cancer Res. 2001;7:2870; Solesvik O et al,, Eur J Cancer Clin Oncol. 1984, 20:1295). The effect of antibody and small
molecule on neovascularization is studied in accordance with procedures known in the art, such as by IHC analysis of tumor
tissues and their surrounding microenvironment.
Mice bearing established orthotopic tumors are administered 1000pg injections of either anti-191P4D12(b) mAb or
PBS over a 4-week period. Mice in both groups are allowed to establish a high tumor burden, to ensure a high frequency of
metastasis formation in mouse lungs. Mice then are killed and their bladders, livers, bone and lungs are analyzed for the
presence of tumor cells by IHC analysis. These studies demonstrate a broad anti-tumor efficacy of anti-191P4D12(b)
antibodies on initiation and progression of prostate cancer in xenograft mouse models. Anti-191P4D12(b) antibodies inhibit
tumor formation of tumors as well as retarding the growth of already established tumors and prolong the survival of treated
mice. Moreover, anti-191P4D12(b) mAbs demonstrate a dramatic inhibitory effect on the spread of local prostate tumor to
distal sites, even in the presence of a large tumor burden. Thus, anti-191P4D12(b) mAbs are efficacious on major clinically
relevant end points (tumor growth), prolongation of survival, and health.
Example 39: Therapeutic and Diagnostic use of Anti-191P4D12(b) Antibodies In Humans.
Anti-191 P4D12(b) monoclonal antibodies are safely and effectively used for diagnostic, prophylactic, prognostic
and/or therapeutic purposes in humans. Western blot and immunohistochemical analysis of cancer tissues and cancer
xenografts with anti-191P4D12(b) mAb show strong extensive staining in carcinoma but significantly lower or undetectable
levels in normal tissues. Detection of 191P4D12(b) in carcinoma and in metastatic disease demonstrates the usefulness of
the mAb as a diagnostic and/or prognostic indicator. Anti-191P4D12(b) antibodies are therefore used in diagnostic
applications such as immunohistochemistry of kidney biopsy specimens to detect cancer from suspect patients.
As determined by flow cytometry, anti-191P4D12(b) mAb specifically binds to carcinoma cells. Thus, anti-
191P4D12(b) antibodies are used in diagnostic whole body imaging applications, such as radioimmunoscintigraphy and
radioimmunotherapy, (see, Potamianos et. al. Anticancer Res 20(2A):925-948 (2000)) for the detection of localized
and metastatic cancers that exhibit expression of 191P4D12(b). Shedding or release of an extracellular domain of
191P4D12(b) into the extracellular milieu, such as that seen for alkaline phosphodiesterase B10 (Meerson, N. R.,
00 Hepatology 27:563-568 (1998)), allows diagnostic detection of 191P4D12(b) by anti-191P4D12(b) antibodies in serum
and/or urine samples from suspect patients.
ri Anti-191P4D12(b) antibodies that specifically bind 191P4D12(b) are used in therapeutic applications for the
treatment of cancers that express 191P4D12(b). Anti-191P4D12(b) antibodies are used as an unconjugated modality and as
conjugated form in which the antibodies are attached to one of various therapeutic or imaging modalities well known in the
art, such as a prodrugs, enzymes or radioisotopes. In preclinical studies, unconjugated and conjugated anti-191P4D12(b)
antibodies are tested for efficacy of tumor prevention and growth inhibition in the SCID mouse cancer xenograft models, e.g.,
kidney cancer models AGS-K3 and AGS-K6, (see, the Example entitled "191P4D12(b) Monoclonal Antibody-mediated
S Inhibition of Bladder and Lung Tumors In Vivo). Either conjugated and unconjugated anti-191P4D12(b) antibodies are used
CN as a therapeutic modality in human clinical trials either alone or in combination with other treatments as described in
following Examples.
00Example 40: Human Clinical Trials for the Treatment and Diagnosis of Human Carcinomas through use of Human
C Anti-191P4D12(b) Antibodies In vivo
Antibodies are used in accordance with the present invention which recognize an epitope on 191P4D12(b), and
are used in the treatment of certain tumors such as those listed in Table I. Based upon a number of factors, including
191P4D12(b) expression levels, tumors such as those listed in Table I are presently preferred indications. In connection with
each of these indications, three clinical approaches are successfully pursued.
Adjunctive therapy: In adjunctive therapy, patients are treated with anti-191P4D12(b) antibodies in
combination with a chemotherapeutic or antineoplastic agent andlor radiation therapy. Primary cancer targets, such as those
listed in Table I, are treated under standard protocols by the addition anti-191P4D12(b) antibodies to standard first and
second line therapy. Protocol designs address effectiveness as assessed by reduction in tumor mass as well as the ability to
reduce usual doses of standard chemotherapy. These dosage reductions allow additional and/or prolonged therapy by
reducing dose-related toxicity of the chemotherapeutic agent. Anti-191P4D12(b) antibodies are utilized in several adjunctive
clinical trials in combination with the chemotherapeutic or antineoplastic agents adriamycin (advanced prostrate carcinoma),
cisplatin (advanced head and neck and lung carcinomas), taxol (breast cancer), and doxorubicin (preclinical).
II.) Monotherapy: In connection with the use of the anti-191P4D12(b) antibodies in monotherapy of tumors,
the antibodies are administered to patients without a chemotherapeutic or antineoplastic agent. In one embodiment,
monotherapy is conducted clinically in end stage cancer patients with extensive metastatic disease. Patients show some
disease stabilization. Trials demonstrate an effect in refractory patients with cancerous tumors.
III.) Imaging Agent Through binding a radionuclide iodine or yttrium (1131, Y90 to anti-191P4D12(b)
antibodies, the radiolabeled antibodies are utilized as a diagnostic and/or imaging agent. In such a role, the labeled
antibodies localize to both solid tumors, as well as, metastatic lesions of cells expressing 191P4D12(b). In connection with
the use of the anti-191P4D12(b) antibodies as imaging agents, the antibodies are used as an adjunct to surgical treatment of
solid tumors, as both a pre-surgical screen as well as a post-operative follow-up to determine what tumor remains and/or
returns. In one embodiment, a (11' ln)-191P4D12(b) antibody is used as an imaging agent in a Phase I human clinical trial in
patients having a carcinoma that expresses 191P4D12(b) (by analogy see, Divgi etal. J. Natl. Cancer nst. 83:97-104
(1991)). Patients are followed with standard anterior and posterior gamma camera. The results indicate that primary lesions
and metastatic lesions are identified.
Dose and Route of Administration
As appreciated by those of ordinary skill in the art, dosing considerations can be determined through comparison
with the analogous products that are in the clinic. Thus, anti-191P4D12(b) antibodies can be administered with doses in the
00 range of 5 to 400 mg/m 2, with the lower doses used, In connection with safety studies. The affinity of anti-
191P4D12(b) antibodies relative to the affinity of a known antibody for its target is one parameter used by those of skill In the
art for determining analogous dose regimens. Further, anti-191P4D12(b) antibodies that are fully human antibodies, as
c compared to the chimeric antibody, have slower clearance; accordingly, dosing in patients with such fully human anti-
191P4D12(b) antibodies can be lower, perhaps in the range of 50 to 300 mg/m 2 and still remain efficacious. Dosing in
mg/m 2 as opposed to the conventional measurement of dose in mg/kg, is a measurement based on surface area and is a
convenient dosing measurement that is designed to include patients of all sizes from infants to adults.
Three distinct delivery approaches are useful for delivery of anti-191P4D12(b) antibodies. Conventional
intravenous delivery is one standard delivery technique for many tumors. However, in connection with tumors in the
CK peritoneal cavity, such as tumors of the ovaries, biliary duct, other ducts, and the like, intraperitoneal administration may
0 prove favorable for obtaining high dose of antibody at the tumor and to also minimize antibody clearance. In a similar
00 manner, certain solid tumors possess vasculature that is appropriate for regional perfusion. Regional perfusion allows for a
O high dose of antibody at the site of a tumor and minimizes short term clearance of the antibody.
NC Clinical Development Plan (CDP)
Overview: The CDP follows and develops treatments of anti-191P4D12(b) antibodies in connection with adjunctive
therapy, monotherapy, and as an imaging agent. Trials initially demonstrate safety and thereafter confirm efficacy in repeat
doses. Trails are open label comparing standard chemotherapy with standard therapy plus anti-191P4D12(b) antibodies. As
will be appreciated, one criteria that can be utilized in connection with enrollment of patients is 191P4D12(b) expression
levels in their tumors as determined by biopsy.
As with any protein or antibody infusion-based therapeutic, safety concerns are related primarily to cytokine
release syndrome, hypotension, fever, shaking, chills; (ii) the development of an immunogenic response to the material
development of human antibodies by the patient to the antibody therapeutic, or HAHA response); and, (iii) toxicity tonormal cells that express 191P4D12(b). Standard tests and follow-up are utilized to monitor each of these safety concerns.Anti-191P4D12(b) antibodies are found to be safe upon human administration.
Example 41: Human Clinical Trial Adjunctive Therapy with Human Anti-191P4D12(b) Antibody andChemotherapeutic Agent
A phase I human clinical trial is initiated to assess the safety of six intravenous doses of a human anti-191P4D12(b) antibody in connection with the treatment of a solid tumor, a cancer of a tissue listed in Table I. In thestudy, the safety of single doses of anti-191P4D12(b) antibodies when utilized as an adjunctive therapy to an antineoplastic
.or chemotherapeutic agent as defined herein, such as, without limitation: cisplatin, topotecan, doxorubicin, adriamycin, taxol,or the like, is assessed. The trial design includes delivery of six single doses of an anti-191P4D12(b) antibody with dosageof antibody escalating from approximately about 25 mg/m 2 to about 275 mg/m 2 over the course of the treatment inaccordance with the following schedule:
Day 0 Day 7 Day 14 Day 21 Day 28 Day
00 mAb Dose 25 75 125 175 225 275
mg/m 2 mg/m 2 mg/m 2 mg/m 2 mg/m2 mg/m 2
SChemotherapy
(standard dose)
O Patients are closely followed for one-week following each administration of antibody and chemotherapy. In
C particular, patients are assessed for the safety concerns mentioned above: cytokine release syndrome, hypotension,
fever, shaking, chills; (ii) the development of an immunogenic response to the material development of human
S antibodies by the patient to the human antibody therapeutic, or HAHA response); and, (iii) toxicity to normal cells that
CK express 191P4D12(b). Standard tests and follow-up are utilized to monitor each of these safety concerns. Patients are also
assessed for clinical outcome, and particularly reduction in tumor mass as evidenced by MRI or other imaging.
C The anti-191P4D12(b) antibodies are demonstrated to be safe and efficacious, Phase II trials confirm the efficacy
0 and refine optimum dosing.
Example 42: Human Clinical Trial: Monotherapy with Human Antl-191P4D12(b) Antibody
Anti-191P4D12(b) antibodies are safe in connection with the above-discussed adjunctive trial, a Phase II human
clinical trial confirms the efficacy and optimum dosing for monotherapy. Such trial is accomplished, and entails the same
safety and outcome analyses, to the above-described adjunctive trial with the exception being that patients do not receive
chemotherapy concurrently with the receipt of doses of anti-191P4D12(b) antibodies.
Example 43: Human Clinical Trial: Diagnostic Imaging with Anti-191P4D12(b) Antibody
Once again, as the adjunctive therapy discussed above is safe within the safety criteria discussed above, a human
clinical trial is conducted concerning the use of anti-191P4D12(b) antibodies as a diagnostic imaging agent. The protocol is
designed in a substantially similar manner to those described in the art, such as in Divgi et al. J. Natl. Cancer Inst. 83:97-104
(1991). The antibodies are found to be both safe and efficacious when used as a diagnostic modality.
Example 44: Homology Comparison of 191P4D12(b) to Known Sequences
The human 191P4D12(b) protein exhibit a high degree of homology to a known human protein, namely Ig
superfamily receptor LNIR (gi 14714574), also known as human nectin 4 (gi 16506807). Human LNIR shows 100% identity
to 191P4D12(b) at the protein level. The mouse homolog of 191P4D12(b) has been Identified as murine nectin 4 (gi
18874521). It shows strong homology to 191P4D12(b), exhibiting 92% identity and 95% homology to 191P4D12(b). (See,
Figure 4).
The prototype member of the 191P4D12(b) family, 191P4D12(b)v.1, Is a 510 amino acids protein, with the N-
terminus located extracellulary and intracellular C-terminus. Initial bioinformatics analysis using topology prediction
programs suggested that 191P2D14 may contain 2 transmembranes based on hydrophobicity profile. However, the first
hydrophobic domain was identified as a signal sequence, rendering 191P2D12 a type I membrane protein, with an
extracellular N-terminus.
The 191P4D12(b) gene has several variants, including one SNP represented in 191P4D12(b) v.2, an N-terminal
deletion variant represented in 191P4D12(b) v.6 and 191P4D12(b) v.7 which lacks 25 amino acids between amino acids 411
and 412 of 191P4D12(b) v.1.
Motif analysis revealed the presence of several protein functional motifs in the 191P4D12(b) protein (Table L).
Two immunoglobulin domains have been identified at positions 45-129 and 263-317. In addition, 191P4D12(b) contains a00 cadherin signature which includes and RGD sequence. Immunoglobulin domains are found in numerous proteins and
participate in protein-protein such including protein-ligand interactions (Weismann et al, J Mol Med 2000, 78:247). In
addition, Ig-domains function in cell adhesion, allowing the interaction of leukocytes and blood-born cells with the
ct endothelium (Wang and Springer, Immunol Rev 1998, 163:197). Cadherins are single transmembrane proteins containing
immunoglobulin like domains, and are involved in cell adhesion and sorting (Shan et al, Biophys Chem 1999, 82:157). They
mediate tissue-specific cell adhesion, such as adhesion of lymphocytes to the surface of epithelial cells. Finally, the closest
homolog to 191P4D12(b) is Nectin4, a known adhesion molecule that regulates epithelial and endothelial junctions, stronglysuggesting that 191P4D12(b) participates in cell adhesion (Reymond N et al, J Biol Chem 2001, 276:43205).
The motifs found in 191P4D12(b) can participate In tumor growth and progression by enhancing the initial stages oftumorigenesis, such as tumor take or establishment of a tumor, by allowing adhesion to basement membranes andsurrounding cells, by mediating cell communication and survival.
00 Accordingly, when 191P4D12(b) functions as a regulator of tumor establishment, tumor formation, tumor growth,cell signaling or as a modulator of transcription involved in activating genes associated with survival, invasion, tumorigenesis
Cl or proliferation, 191P4D12(b) is used for therapeutic, diagnostic, prognostic and/or preventative purposes. In addition, whena molecule, such as a variant or SNP of 191P4D12(b) is expressed in cancerous tissues, such as those listed in Table I, theyare used for therapeutic, diagnostic, prognostic and/or preventative purposes.
Example 45: Regulation of Transcription
The cell surface localization of 191P4D12(b) coupled to the presence of Ig-domains within its sequence indicatethat 191P4D12(b) modulates signal transduction and the transcriptional regulation of eukaryotic genes. Regulation of geneexpression is confirmed, by studying gene expression in cells expressing or lacking 191P4D12(b). For this purpose,two types of experiments are performed.
In the first set of experiments, RNA from parental and 191P4D12(b)-expressing cells are extracted and hybridizedto commercially available gene arrays (Clontech) (Smid-Koopman E et al. Br J Cancer. 2000. 83:246). Resting cells as wellas cells treated with FBS, androgen or growth factors are compared. Differentially expressed genes are identified inaccordance with procedures known in the art. The differentially expressed genes are then mapped to biological pathways(Chen K et al. Thyroid. 2001.11:41.).
In the second set of experiments, specific transcriptional pathway activation is evaluated using commerciallyavailable (Stratagene) luciferase reporter constructs including: NFkB-luc, SRE-luc, ELKI-luc, ARE-luc, p53-luc, and CRE-luc.These transcriptional reporters contain consensus binding sites for known transcription factors that lie downstream of well-characterized signal transduction pathways, and represent a good tool to ascertain pathway activation and screen forpositive and negative modulators of pathway activation.
Thus, 191P4D12(b) plays a role in gene regulation, and it is used as a target for diagnostic, prognostic, preventative and/ortherapeutic purposes.
Example 46: Identification and Confirmation of Potential Signal Transduction PathwaysMany mammalian proteins have been reported to interact with signaling molecules and to participate in regulating
signaling pathways. (J Neurochem. 2001; 76:217-223). Immunoglobulin-like molecules in particular has been associatedwith several tyrpsine klnases including Lyc, Blk, syk the MAPK signaling cascade that control cell mitogenesis and calciumflux (Vilen J et al, J Immunol 1997, 159:231; Jiang F, Jia Y, Cohen I. Blood. 2002, 99:3579). In addition, the 191P4D12(b)
protein contains several phosphorylation sites (see Table VI) indicating an association with specific signaling cascades.
Using immunoprecipitation and Western blotting techniques, proteins are identified that associate with 191P4D12(b) and
00 mediate signaling events. Several pathways known to play a role in cancer biology can be regulated by 191P4012(b),
including phospholipid pathways such as P13K, AKT, etc, adhesion and migration pathways, including FAK, Rho, Rac-1,
C icatenin, etc, as well as mitogenic/survival cascades such as ERK, p38, etc (Cell Growth Differ. 2000,11:279; J Biol Chem.
1999, 274:801; Oncogene. 2000, 19:3003, J. Cell Biol. 1997, 138:913.). In order to determine whether expression of
191P4D12(b) is sufficient to regulate specific signaling pathways not otherwise active in resting PC3 cells, the effect of these
genes on the activation of the p38 MAPK cascade was investigated in the prostate cancer cell line PC3 (Figure 21A-B).
Activation of the p38 kinase is dependent on its phosphorylation on tyrosine and serine residues. Phosphorylated p38 can be
distinguished from the non-phosphorylated state by a Phospho-p38 mAb. This phospho-specific Ab was used to study the
S phosphorylation state of p38 in engineered PC3 cell lines.
CK PC3 cells stably expressing 191P4D12(b) neo were grown overnight in either 1% or 10% FBS. Whole cell lysates
were analyzed by western blotting. PC3 cells treated with the known p38 activators, NaSal or TNF, were used as a positive
C control. The results show that while expression of the control neo gene has no effect on p38 phosphorylation, expression of
191P4D12(b) in PC3 cells is sufficient to induce the activation of the p38 pathway (Figure 21A). The results were verified
K using western blotting with an anti-p38 Ab, which shows equal protein loading on the gels (Figure 21B).
In another set of experiments, the sufficiency of expression of 191P4D12(b) in the prostate cancer cell line PC3 to activate
the mitogenic MAPK pathway, namely the ERK cascade, was examined (Figure 22A-B). Activation of ERK is dependent on
its phosphorylation on tyrosine and serine residues. Phosphorylated ERK can be distinguished from the non-phosphorylated
state by a Phospho-ERK mAb. This phospho-specific Ab was used to study the phosphorylation state of ERK in engineered
PC3 cell lines. PC3 cells, expressing an activated form of Ras, were used as a positive control.
The results show that while expression of the control neo gene has no effect on ERK phosphorylation, expression of
191P4D12(b) in PC3 cells Is sufficient to induce an increase in ERK phosphorylation (Figure 22A). These results were
verified using anti-ERK western blotting (Figure 22B) and confirm the activation of the ERK pathway by 191P4D12(b) and
STEAP-2.
Since FBS contains several components that may contribute to receptor-mediated ERK activation, we examined
the effect of 191P4D12(b) in low and optimal levels of FBS. PC3 cells expressing neo or 191P4D12(b) were grown in either
0.1% or 10% FBS overnight. The cells were analyzed by anti-Phospho-ERK western blotting. This experiment shows that
191P4D12(b) induces the phosphorylation of ERK in 0.1% FBS, and confirms that expression of 191P4D12(b) is sufficient to
induce activation of the ERK signaling cascade in the absence of additional stimuli.
To confirm that 191P4D12(b) directly or indirectly activates known signal transduction pathways in cells, luciferase
(luc) based transcriptional reporter assays are carried out in cells expressing individual genes. These transcriptional
reporters contain consensus-binding sites for known transcription factors that lie downstream of well-characterized signal
transduction pathways. The reporters and examples of these associated transcription factors, signal transduction pathways,
and activation stimuli are listed below.
1. NFkB-luc, NFkB/Rel; Ik-kinase/SAPK; growthlapoptosis/stress
2. SRE-luc, SRFfTCF/ELK1; MAPK/SAPK; growth/differentiation
3. AP-1-luc, FOS/JUN; MAPK/SAPK/PKC; growth/apoptosis/stress
4. ARE-luc, androgen receptor; sterolds/MAPK; growth/differentiation/apoptosis
p53-luc, p53; SAPK; growth/differentiation/apoptosis
6. CRE-luc, CREB/ATF2; PKAlp38; growth/apoptosis/stress
7. TCF-luc, TCF/Lef; 0-catenin, Adhesion/invasion
00 Gene-mediated effects can be assayed in cells showing mRNA expression. Luciferase reporter plasmids can be
0 introduced by lipid-mediated transfection (TFX-50, Promega). Luciferase activity, an indicator of relative transcriptional
activity, is measured by incubation of cell extracts with luciferin substrate and luminescence of the reaction is monitored in a
C' luminometer.
Signaling pathways activated by 191P4D12(b) are mapped and used for the identification and validation of
0 therapeutic targets. When 191P4D12(b) is involved in cell signaling, it is used as target for diagnostic, prognostic,
preventative and/or therapeutic purposes.
r"-Example 47: Involvement in Tumor Progression
Based on the role of Ig-domains and cadherin motifs in cell growth and signal transduction, the 191P4D12(b) gene
can contribute to the growth, invasion and transformation of cancer cells. The role of 191P4D12(b) in tumor growth is
00 confirmed in a variety of primary and transfected cell lines including prostate cell lines, as well as NIH 3T3 cells engineered
to stably express 191P4D12(b). Parental cells lacking 191P4D12(b) and cells expressing 191P4D12(b) are evaluated for cell
rC growth using a well-documented proliferation assay (Fraser SP, Grimes JA, Djamgoz MB. Prostate. 2000;44:61, Johnson
DE, Ochieng J, Evans SL. Anticancer Drugs. 1996, 7:288).
To confirm the role of 191P4D12(b) in the transformation process, its effect in colony forming assays is
investigated. Parental NIH-3T3 cells lacking 191P4D12(b) are compared to NIH-3T3 cells expressing 191P4D12(b), using a
soft agar assay under stringent and more permissive conditions (Song Z. et al. Cancer Res. 2000;60:6730).
To confirm the role of 191P4D12(b) in invasion and metastasis of cancer cells, a well-established assay is used,
a Transwell Insert System assay (Becton Dickinson) (Cancer Res. 1999; 59:6010). Control cells, including prostate,
breast and kidney cell lines lacking 191P4D12(b) are compared to cells expressing 191P4D12(b). Cells are loaded with the
fluorescent dye, calcein, and plated in the top well of the Transwell insert coated with a basement membrane analog.
Invasion Is determined by fluorescence of cells in the lower chamber relative to the fluorescence of the entire cell population.
191P4D12(b) can also play a role in cell cycle and apoptosis. Parental cells and cells expressing 191P4D12(b) are
compared for differences in cell cycle regulation using a well-established BrdU assay (Abdel-Malek ZA. J Cell Physiol.
1988, 136:247). In short, cells are grown under both optimal (full serum) and limiting (low serum) conditions are labeled with
BrdU and stained with anti-BrdU Ab and propidium iodide. Cells are analyzed for entry into the G1, S, and G2M phases of
the cell cycle. Alternatively, the effect of stress on apoptosis is evaluated in control parental cells and cells expressing
191P4D12(b), including normal and tumor prostate cells. Engineered and parental cells are treated with various
chemotherapeutic agents, such as etoposide, taxol, etc, and protein synthesis inhibitors, such as cycloheximide. Cells are
stained with annexin V-FITC and cell death is measured by FACS analysis. The modulation of cell death by 191P4D12(b)
can play a critical role in regulating tumor progression and tumor load.
When 191P4D12(b) plays a role in cell growth, transformation, invasion or apoptosis, it is used as a target for
diagnostic, prognostic, preventative and/or therapeutic purposes.
Example 48: Involvement In Anglogenesis
Angiogenesis or new capillary blood vessel formation is necessary for tumor growth (Hanahan D, Folkman J. Cell.
1996, 86:353; Folkman J. Endocrinology. 1998 139:441). Based on the effect of cadherins on tumor cell adhesion and
their Interaction with endothelial cells, 191P4012(b) plays a role In angiogenesis (Mareel and Leroy: Physiol Rev, 83:337;
DeFouw L et al, Microvasc Res 2001, 62:263). Several assays have been developed to measure anglogenesis in vitro and
in vivo, such as the tissue culture assays endothelial cell tube formation and endothelial cell proliferation. Using these
assays as well as in vitro neo-vascularization, the role of 191P4D12(b) in angiogenesis, enhancement or inhibition, is
confirmed.00
O For example, endothelial cells engineered to express 191P4D12(b) are evaluated using tube formation and
proliferation assays. The effect of 191P4D12(b) is also confirmed in animal models in vivo. For example, cells either
expressing or lacking 191P4D12(b) are implanted subcutaneously in immunocompromised mice. Endothelial cell migration
and angiogenesis are evaluated 5-15 days later using immunohistochemistry techniques. 191P4D12(b) affects
angiogenesis, and it is used as a target for diagnostic, prognostic, preventative and/or therapeutic purposes.
Example 49: Involvement in Protein-Protein Interactions
Ig-domains and cadherin motifs have been shown to mediate interaction with other proteins, including cell surface
protein. Using immunoprecipitation techniques as well as two yeast hybrid systems, proteins are identified that associate
C- with 191P4D12(b). Immunoprecipitates from cells expressing 191P4D12(b) and cells lacking 191P4D12(b) are compared for
CN specific protein-protein associations.
SStudies are performed to confirm the extent of association of 191P4D12(b) with effector molecules, such as
O nuclear proteins, transcription factors, kinases, phosphates etc. Studies comparing 191P4D12(b) positive and 191P4D12(b)
negative cells as well as studies comparing unstimulated/resting cells and cells treated with epithelial cell activators, such as
cytokines, growth factors, androgen and anti-integrin Ab reveal unique interactions.
In addition, protein-protein interactions are confirmed using two yeast hybrid methodology (Curr. Opin. Chem Biol.
1999, 3:64). A vector carrying a library of proteins fused to the activation domain of a transcription factor is introduced into
yeast expressing a 191P4D12(b)-DNA-binding domain fusion protein and a reporter construct. Protein-protein interaction is
detected by colorimetric reporter activity. Specific association with effector molecules and transcription factors directs one of
skill to the mode of action of 191P4D12(b), and thus identifies therapeutic, prognostic, preventative and/or diagnostic targets
for cancer. This and similar assays are also used to identify and screen for small molecules that interact with 191P4D12(b).
Thus it is found that 191P4D12(b) associates with proteins and small molecules. Accordingly, 191P4D12(b) and these
proteins and small molecules are used for diagnostic, prognostic, preventative and/or therapeutic purposes.
Example 50: Involvement of 191P4D12(b) in cell-cell communication.
Cell-cell communication is essential in maintaining organ Integrity and homeostasis, both of which become
deregulated during tumor formation and progression. Based on the presence of a cadherin motif in 191P4D12(b), a motif
known to be involved in cell interaction and cell-cell adhesion, 191P4D12(b) can regulate cell communication. Intercellular
communications can be measured using two types of assays Biol. Chem. 2000, 275:25207). In the first assay, cells
loaded with a fluorescent dye are incubated in the presence of unlabeled recipient cells and the cell populations are
examined under fluorescent microscopy. This qualitative assay measures the exchange of dye between adjacent cells. In
the second assay system, donor and recipient cell populations are treated as above and quantitative measurements of the
recipient cell population are performed by FACS analysis. Using these two assay systems, cells expressing 191P4D12(b)
are compared to controls that do not express 191P4D12(b), and it is found that 191P4D12(b) enhances cell communications.
Figure 19 and Figure 20 demonstrate that 191P4D12(b) mediates the transfer of the small molecule calcein between
adjacent cells, and thereby regulates cell-cell communication in prostate cancer cells. In this experiment, recipient PC3 cells
were labeled with dextran-Texas Red and donor PC3 cells were labeled with calcein AM (green). The donor (green) and
recipient (red) cells were co-cultured at 370C and analyzed by microscopy for the co-localization of Texas red and calcein.
The results demonstrated that while PC3 control cells (no detectable 191P4D12(b) protein expression) exhibit little calcein
transfer, the expression of 191P4D12(b) allows the transfer of small molecules between cells (Figure 19), whereby the
initially red recipient cells take on a brownish color, and co-localize the red and green molecules. Small molecules and/or
00 antibodies that modulate cell-cell communication mediated by 191P4D12(b) are used as therapeutics for cancers thatS express 191P4D12(b). When 191P4D12(b) functions in cell-cell communication and small molecule transport, it Is used as a
rCl target or marker for diagnostic, prognostic, preventative and/or therapeutic purposes.
Example 51: Modulation of 191P4D12(b) function.
Knock down of 191P4D12(b) expression
rli Several techniques can be used to knock down or knock out 191 P4D12(b) expression in vitro and in-vivo, includingRNA interference (RNAi) and other anti-sense technologies. RNAi makes use of sequence specific double stranded RNA toprevent gene expression. Small interfering RNA (siRNA) are transfected into mammalian cells and thereby mediate
S sequence specific mRNA degradation. (Elbashir, et al, Nature, 2001; vol. 411: 494-498). Using this approach, 191P4D12(b)-specific RNAi is introduced in 191P4D12(b)-expressing cells by transfection. The effect of knocking down the expression of
CN 191P4D12(b) protein is evaluated using the biological assays mentioned in examples 44 to 50 above.00
SReduction of 191P4D12(b) Protein expression is detected 24-48 hours after transfection by Immunostaining andS flow cytometry. The introduction of 191P4D12(b) specific RNAi reduced the expression of 191P4D12(b) positive cells and
reduce the biological effect of 191P4D12(b) on tumor growth and progression.
Accordingly, the RNA oligonucleotide sequences are used in therapeutic and prophylactic applications. Moreover,the RNA oligonucleotide sequences are used to assess how modulating the expression of a 191P4D12(b) gene affectsfunction of cancer cells and/or tissues.
Inhibition using small molecule and antibodies
Using control cell lines and cell lines expressing 191P4D12(b), inhibitors of 191P4D12(b) function are identified.For example, PC3 and PC3-191P4D12(b) cells can be incubated in the presence and absence of mAb or small moleculeinhibitors. The effect of these mAb or small molecule inhibitors are investigated using the cell communication, proliferationand signaling assays described above.
Signal transduction and biological output mediated by cadherins can be modulated through various mechanisms, includinginhibition of receptor binding, prevention of protein interactions, or affecting the expression of co-receptors and bindingpartners (Kamei et al, Oncogene 1999, 18:6776). Using control cell lines and cell lines expressing 191P4D12(b), modulators(inhibitors or enhancers) of 191P4D12(b) function are identified. For example, PC3 and PC3-191P4D12(b) cells areincubated in the presence and absence of mAb or small molecule modulators. When mAb and small molecules modulate,
inhibit, the Iransport and tumorigenic function of 191P4D12(b), they are used for preventative, prognostic, diagnosticand/or therapeutic purposes.
Throughout this application, various website data content, publications, patent applications and patents arereferenced. (Websites are referenced by their Uniform Resource Locator, or URL, addresses on the World Wide Web.)
The present invention is not to be limited in scope by the embodiments disclosed herein, which are intended assingle illustrations of individual aspects of the invention, and any that are functionally equivalent are within the scope of theinvention. Various modifications to the models and methods of the invention, in addition to those described herein, willbecome apparent to those skilled in the art from the foregoing description and teachings, and are similarly intended to fallwithin the scope of the invention. Such modifications or other embodiments can be practiced without departing from the truescope and spirit of the invention.
TABLES:
00TABLE 1: Tissues that Express 191NPDI 2(b):
a. Malianant Tissues
ProstateBladderKidneyColonLungPancreasOvaryBreastUterusCervix
TABLE ii: Amino AcId Abbreviations
SINGLE LETTER THREE LETTER FULL NAME
F Phe phenylalanineL Leu leucineS Ser serineY Tyr tyrosineC Cys cysteineW Trp tryptophanP Pro prolineH His histidineQ Gln glutamineR Arg arginine
Ilie isoleucineM Met methionineT Thr threonineN Asn asparagineK LYS lysineV Val valineA Ala aianlneD Asp aspartic acidE Glu glutamic acidG Gly glycine
TABLE III: Amino Acid Substitution Matrix
00 Adapted from the GCG Software 9.0 BLOSUM62 amino acid substitution matrix (block substitution matrix). The
S higher the value, the more likely a substitution is found in related, natural proteins. (See world wide web URLS ikp.unibe.ch/manual/blosum62.html)
A C D E F G H I K L M N P Q R S T V W Y.4 0 -2 -1 -2 0 -2 -1 -1 -1 -2 -1 -1 -1 1 0 0 -3 -2 A
9 -3 -4 -2 -3 -3 -1 -3 -1 -1 -3 -3 -3 -3 -1 -1 -1 -2 -2 C6 2 -3 -1 -1 -3 -1 -4 -3 1 -1 0 -2 0 -1 -3 -4 -3 D
-3 -2 0 -3 1 -3 -2 0 -1 2 0 0 1 -2 -3 -2 E6 -3 -1 0 -3 0 0 -3 -4 -3 -3 -2 -2 -1 1 3 F
6 -2 -4 -2 -4 -3 0 -2 -2 -2 0 -2 -3 -2 -3 G8 -3 -1 -3 -2 1 -2 0 0 -1 -2 -3 -2 2 H
4 -3 2 1 -3 -3 -3 -3 -2 -1 3 -3 -1 1-2 -1 0 1 1 2 0 -1 -2 -3 -2 K
CN14 2 -3-3 -2-2-2 -1 1 -2 -1 L-2 -2 0 -1 -1 -1 1 1 -1I M
00 6 -2 0 0 1 0 -3 -4-2 N7 -1 -2 -1 -1 -2 -4 -3 P
1 0 -1 -2 -2 -1 Q1 -1 -3 -3 -2 R4 1 -2 -3 -2 S
0 -2 -2 T4 -3 -1 V
1.1 2 W
7 Y
TABLE IV:HLA Class 1111 Mo~f slSupermotifs
00
00
TABLE IV HLA Class I SupermotifslMotifs
ISUPERMOTIF POSITION POSITION POSITION2 (Primary Anchor) 3 (Primary Anchor) C Terminus (Primary
Al TIL VMS FWYA2 LIVMATQ _____IVMATL
A3 VSMATLI RKA24 YFWIVLMT Fl YWLMB7 P VILFMWYA827 RHK
B44 ED ________FWYLIMVA
B58 ATS 862 QLIVMP FWYMIVL A
MOTIFS
Al TSM YAl IDEAS YA2.1 LMVQIAT VLIMATA3 LMVISATFCGD KYRHFAAllI VTMLISAGNCDF KRYHA24 YFWM FLIWA'3101 MVTAUIS A*3301 MVALFIST A*6801 AVTMSLI RK
B'*0702 p LMFWVfAIV8*3501 P LMFWYIVAB51 P _LIVF WYAMB*5301 P IMFWYALVB*5401 P ATIVLMFWY
Bolded residues are preferred, italicized residues are less preferred: A peptide is considered motif-bearing if it has primaryanchors at each primary anchor position for a motif or supermotif as specified in the above table.
TABLE IV HLA Class 11 Supermotif
TABLE IV HLA Class 11 Motifs
MOTIFS 1"a anchor 1 2 3 4 5 1 anchor 6 7 8 9DR4 preferred FMYUIVW M T I VSTCPALIM MH MH
deleterious W R WOE
DR1 preferred MFLIVWY PAMQ VMATSPUIC M AVMdeleterious C CH FD CWD GDE D
DR7 preferred MFLIVWY M W A IVMSACTPL M IVdeleterious C G GIRD N G
DR3 MOTIFS 1 0anchor 1 2 3 1 *anchor 4 5 1 *anchor 6Motif a preferred LIVMFY DMotif b preferred LIVMFAY DNQEST KRHDR Supermotif MFLIVWY VMSTACPU/
Italicized residues indicate less preferred or "tolerated" residues
TABLE IV HLA Class I Supermotifs
POSITION: 1 2 3 4 5 6 7 8 C-terminusSUPER-MOTIFSAl 1 a Anchor I' Anchor
TIL VMS FWYA2 10* Anchor 1 Anchor
LIVMATQ LIVMATA3 Preferred 1 0 Anchor YEW YFW YFW P 1 0 Anchor
VSMATL/ RKdeleterious DE DE
P A24 1' Anchor 1 o Anchor
YFV~1VLMT FlY WLMB7 Preferred FWY 10* Anchor FWY FWY 1 "Anchor
LIVM P VILFMWYAdeleterious DE DE G QN DE
G(415);
B27 1* Anchor I "AnchorRHK FYLWMIVA
B41 *Anchor 1 0 AnchorED FWYLIMVA
858 1 *Anchor 1" AnchorATS FWYLIVMA
B62 1 *Anchor 1" AnchorQUVMP FWYMIVLA
Italicized residues indicate less preferred or "tolerated" residues
TABLE IV HLA Class I Motifs
POSITION 1 3 4 5 6 7 8 9 C-00
00
terminusorC-terminus
Al preferred GFYW 1 0Anchor DEA YFW P DEQN YFW 1 *Anchor9-mer STM Y
deleterious DE RHKLIVMP A G AAl preferred GRHK ASTCLIVM 1 0Anchor GSTC ASTC LIVMV DE 1 0Anchor9-mer DEAS Y
deleterious A RHKDEPYFW DE PQN RHK PG GPAl preferred YFW 1 0Anchor DEAQIN A YFWQN PASTO GDE P 1 0Anchor
STM Ymer
deleterious GP RHKGLIVM DE RHK ONA RHKYFW RHK AAl preferred YFW STCLIVMV 1 0Anchor A YFW PG G YFW 1 0Anchor
IDEAS Ymer
deleterious RHK RHKDEPYFW P G PRHK QNA2.1 preferred YEW l0Anchor YFW STO YFW A P l0Anchor9-mer LMIVQAT VLMAT
deleterious DEP DERKH RKH DERKHPOSITION:l1 3 4 5 6 7 8 9 C-
TerminusA2.1 preferred AYFW l0Anchor LVIm G G FYWL l0Anctior
LMIVQAT vim VLMATmer
deleterious DEP DE RKHA P RKH DERKHRKHA3 preferred RHK l0Anctior YFW PRHKYF A YFW P 1*Anchor
LMVISATFCGD W KXRHFAdeleterious DEP DE
AllI preferred A 1*Anchor YEW YEW A YEW YEW P l0AnchorVTLMISAGN CD KRYHF
deleterious DEP A GA24 preferred YFWRHK l0*Anchor STC YEW YFW l0Anchor9-mer YFWM FLIW
deleterious DEG DE G QNP DERHKG AQNA24 Preferred 1 0Anchor P YFWP P 1 0Anchor
YFWM FLIWmer
Deleterious GDE QN RHK DE A QN DEAA3101 Preferred RHK l0Anctior YFW P YFW YFW AP I Anchor
MVTALIS RKDeleterious DEP DE ADE DE DE DE
A3301 Preferred 1 0Anctior YFW AYFW 1 0AnchorMVALFIST RK
Deleterious GP DEA6801 Preferred YFWSTC I *Anchor YFWLIV YEW P l0Anchor
AVTMSLI M RKdeleterious GP DEG RHK A
B30702 Preferred RHKFWY' 1 0Anchor RHK RHK RHK RHK PA 1 0AnchorP LMFWYAI
Vdeleterious DEQNP DEP DE DE GDE QN DE
B3501 Preferred FWYLIVM 1 0Anchor FWY FWY 1*AnchorP LMFWY/V
POSITION I POION1 2 3 4 5 6 7 8 9 0-
00
00
terinIIusor
Al peferedGFYW 1 Act~r DA YF P EON YFW C-terminusprf FW 8Aco DA YWP DQ F Anchor9-mer STM Y
deleterious DE RHKLIVMP A G AAl preferred GRHK ASTCLIVM J0Anchor GSTC ASTC LIVM DE IcAnchor9-mer IDEAS Ydeleterious A RHKDEPYFW DE PQN RHK PG GP
deleterious AGP G G
851 Preferred LIVMFWY l0Anchor FWY STC FWY G FWY l0AnchorP LIVFWYA
Mdeleterious AGPIDER IDE G IDEQN GDEHKSTC
B5301 preferred LIVMFWY 1 *Anchor F5"Y STC FWY LI VMFWYF WY 1 AnctiorP IMFWYAL
Vdeleterious AGPQN G RHKQN IDE85401 preferred FWY 1 Anchor FWYLIVM LIVM ALIVM FWYA 1 *AnchorP P AT! VLMF
WYdeleterious GPQNDE GDESTC RHKDE IDE QNIDGE DE
TABLE IV
00
0
Summary of HLA-supertypesOverall phenotypic frequencies of HLA-supertypes In different ethnic populations
Specificity Phenotypic frequencySupertype Position 2 C-Terminus Caucasian N.A. Black Japanese Chinese Hispanic AverageB7 P AILMVFWY43.2 55.1 57.1 43.0 49.3 49.5,3 ,LMVST RK 37.5 42.1 45.8 52.7 43.1 44.2A2 AILMVT AILMVT 45.8 39.0 42.4 45.9 43.0 42.224 F (WIVLMT) FI (YWLM) 23.9 38.9 58.6 0.1 8.3 0.0
B44_ E(D) .FWYLIMVA 3.0 21.2 42.9 39.1 39.0 37.01 I (LVMS) FWY 47.1 16.1 21.8 14.7 26.3 25.227 HK YL (WMI) 28.4 26.1 13.3 13.9 35.3 23.4
362 QL(IVMP) FWY (MIV) 12.6 .8 36.5 25.4 11.1 18.158 ATS FWY (LIV) 10.0 25.1 1.6 9.0 5.9 10.3
TABLE IV Calculated population coverage afforded by different HLA-supertype combinationsHLA-supertypes Phenotypic frequency
Caucasian N.A Blacks Japanese hinese Hispanic Average83.0 86.1 87.5 88.4 36.3 86.2
2, A3 and 87 99.5 98.1 100.0 99.5 99.4 99.32, A3, B7, A24, B44 99.9 99.6 100.0 99.8 99.9 99.8
and AlA2, A3, B7, A24,B44, A1,B27, B62,nd B 58otifs indicate the residues defining supertype specificites. The motifs incorporate residues determined on the basis ofublished data to be recognized by multiple alleles within the supertype. Residues within brackets are additional residuesaso predicted to be tolerated by multiple alleles within the supertype.
Fable
V: Frequently Occurring Motifs
Table V: Frequently Occurring Motifs
I
Name avrg.% Description Potential Functionidentity
Nucleic acid-binding protein functions astranscription factor, nuclear location
f-C2H2 34% Zinc finger, C2H2 type probable
Cytochrome b(N- membrane bound oxidase, generate;ytochrome_b_N 68% erminal)/b6/petB superoxide
domains are one hundred amino acidslong and include a conserved
Ig 19% Immunoglobulin domain intradomain disulfide bond.tandem repeats of about 40 residues,each containing a Trp-Asp motif.Function in signal transduction and
18% WD domain, G-beta repeat protein interaction
may function in targeting signalingPDZ 23% PDZ domain molecules to sub-membranous sitesLRR 28% -eucine Rich Repeat short sequence motifs involved in
protein-protein interactions
conserved catalytic core common toboth serine/threonine and tyrosineprotein kinases containing an ATP
Pkinase 23% Protein kinase domain binding site and a catalytic site
00O0O
pleckstrin homology involved inintracellular signaling or as constituents
PH 16% PH domain of the cytoskeleton30-40 amino-acid long found in theextracellular domain of membrane-
EGF 34% EGF-like domain bound proteins or in secreted proteins
Reverse transcriptase(RNA-dependent DNA
Rvt 49% polymerase)
Cytoplasmic protein, associates integralAnk 25% Ank repeat membrane proteins to the cytoskeleton
NADH- membrane associated. Involved inUbiquinone/plastoquinone proton translocation across the
Oxidored_qi 32% (complex various chains membranecalcium-binding domain, consists of a12residue loop flanked on both sides by a
Efhand 24% EF hand 12 residue alpha-helical domain
Retroviral aspartyl Aspartyl or acid proteases, centered onRvp 79% protease a catalytic aspartyl residue
extracellular structural proteins involvedin formation of connective tissue. The
Collagen triple helix repeat sequence consists of the G-X-Y and theCollagen 42% (20 copies) polypeptide chains forms a triple helix.
Located in the extracellular ligand-binding region of receptors and Is about200 amino acid residues long with twopairs of cysteines involved in disulfide
Fn3 20% Fibronectin type III domain )ondsseven hydrophobic transmembraneegions, with the N-terminus located
7 transmembrane receptor extracellularly while the C-terminus Is7tm_1 19% (rhodopsin family) cytoplasmic. Signal through G proteins
Table VI: Motifs and Post-translational Modifications of 191P4D12(b)
Table VI: Post-translational modifications of 191P4D12(b)
N-glycosylation site281 284 NWTR (SEQ ID NO: 61)430- 433 NSSC (SEQ ID NO: 62)489- 492 NGTL (SEQ ID NO: 63)
Tyrosine sulfatlon site118- 132 VQADEGEYECRVSTF (SEQ ID NO: 64)
Protein kinase C phosphorylation site26- 28 TGR
192-194 SSR195-197 SFK249-251 SVR322-324 SSR339- 341 SGK383-385 TQK397-399 SIR426-428 SLK450-452 TVR465-467 SGR491 493 TLR
Casein kinase II phosphorylation site
283 -286 TIRLD (SEQ ID NO: 322- 325 SSRD (SEQ ID NO: 66)410-413 SQPE (SEQ ID NO: 67)426 -429 SLKD (SEQ ID NO: 68)
00 450 453 TVRE (SEQ ID NO: 69)456-459 TQTE (SEQ ID NO:
N-myristoylaUon site.135-140 GSFQAR (SEQ ID NO: 71)162- 167 GQGLTL (SEQ ID NO: 72)164-169 GLTLAA (SEQ ID NO: 73)189-194 GTTSSR (SEQ ID NO: 74)
c-i218-223 GQPLTC (SEQ ID NO: 311 -316 GIYVCH (SEQ ID NO; 76)354 -359 GVIAAL (SEQ ID NO: 77)464 -469 GSGRAE (SEQ ID NO: 78)477 -482 GlKQAM (SEQ ID NO: 79)490- 495 GTLRAK (SEQ ID NO:
c-K1500- 505 WIING (SEQ ID NO: 81)
c-1 RGD Cell attachment sequence00 55 -57 RGD
ci Table VII:Search Peptides
191 P412(b) v.1 aal-.5109-mers, 10-mets and 15-mers (SEQ ID NO: 82)MPLSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGEQVGQVAWARV DAGEGAQELA LLHSKYGLHV SPAYEGRVEQ PPPPRNPLDG SVLLRNAVQADEGEYECRVS TFPAGSFQAR LRLRVLVPPL PSLNPGPALE EGQGLTLMAS CTAEGSPAPSVTWDTEVKGT TSSRSFKHSR SAAVTSEFHL VPSRSMNGQP LTCWVSHPGL LQDQRITHILHVSFLAEASV-RGLEDQNLWH IGREGAMLKC LSEGQPPPSY NWVTRLDGPLP SGVRVDGDTLGFPPLTTEHS GIYVCHVSNE FSSRDSQVTV DVLDPQEDSG KQVDLVSASV VVVGVIAALLFCLLVVVVVL MSRYHRRKAQ QMTQKYEEEL TLTRENSIRR LHSHHTDPRS QPEESVGLRAEGHPDSLKDN SSCSVMSEEP EGRSYSTLTT VREIETQTEL LSPGSGRAEE EEDQDEGIKQAMNHFVQENG TLRAKPTGNG IYINGRGHLV
v.2 aal -5109-mets 45-6 1 GQDAKLPCLYRGDSGEQ (SEQ ID NO: 83)
44-62 LGQDAKLPCLYRGDSGEQV (SEQ ID NO: 84)39-67 VVTVVLGQDAKLPCLYRGDSGEQVGQVAW (SEQ ID NO:
v. ORFR 264..1721 Frame +39-mets 403-418 SHHTDPRSQSEEPEGR (SEQ ID NO: 86)
402-419 HSHHTDPRSQSEEPEGRS (SEQ ID NO: 87)397-424 SIRRLHSHHTDPRSQSEEPEGRSYSTLT (SEQ ID NO: 88)
V.9: AA 1-137; 9-mets, 1O-mers, 15-mets (SEQ ID NO: 89)MRRELLAGIL LRITFNFFLF FFLPFPLVVF FIYFYFYFFL EMESHYVAQA GLELLGSSNPPASASLVAGT LSVHHCACFE SFTKRKKKLK KAFRFIQCLL LGLLKVRPLQ HQGVNSCDCERGYFQGIFMQ MAPWEGT
SNP variant9-mets 27-43 GRCPAGELGTSDVVTWV (SEQ ID NO: 1 0-mets 26-44 TGRCPAGELGTSDVVTWVL (SEQ ID NO: 91)
21-49 LLASFTGRCPAGELGTSDVVTVVLGQDAK (SEQ ID NO: 92)
v11 SNP variant9-mets 138-154 QARLRLRVMVPPLPSLN (SEQ ID NO: 93)
137-1 55 FQARLRLRVMVPPLPSLNP (SEQ ID NO: 94)132-1 60 FPAGSFQARLRLRVMVPPLPSLNPGPALE (SEQ ID NO:
7-
v.12 SNP variant9-mers 435-451 VMSEEPEGCSYSTLTTV (SEQ ID NO: 96)1 0-mers 434-452 SVMSEEPEGCSYSTLTTVRE (SEQ ID NO: 97)
00 15-mers 429-457 DNSSCSVMSEEPEGCSYSTLTTVREIETQ (SEQ ID NO: 98)
v.13 Insertion of one AA at 333-49-mers 426-442 SQVTVDVLADPQEDSGK (SEQ ID NO: 99)
S 10-mers 425-443 DSQVTVDVLADPQEDSGKQ (SEQ ID NO: 100)420-448 EFSSRDSQVTVDVLADPQEDSGKQVDLVS (SEQ ID NO: 101)
S 191P4Dl2(b)v.14: AA56-72; 9-mersGSSNPPASASLVAGTLS (SEQ ID NO: 102)
.191 P4DI 2(b) v.14: AA55-73; I 0-mersLGSSNPPASASLVAGTLSV (SEQ ID NO: 103)
c~I 191 P4DI 2(b) v.1 4: AA5O-78; riAGLELLGSSNPPASASLVAGTLSVHHCAC (SEQ ID NO: 104)
00
Tables VillI- XXI:
00
00
1Table VIII-VI-H LA-Al -9mers-_191P4D126
Each peptide is a portion ofSEQ ID NO: 3; each start
Iposition Is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide Is the start positionJ
[StartjSu-bsequence 1STrei
,F437 SEEPEGRSYF22500 I
EfLRV~fEPPPP]j 1.000]
E7i LSGQPPPS! 21.700
107 PLDGq SVLLR -TI.FpjLEiELT LTR]L.3oF[41 qtEE§KyR I 2.2501
58FTE VKGTS~ 1.250]
F7-67PidAEM PEAI i9I
45:'TSVVTWL] 1.5001
IL 3611 MSEEPEGRS[ 1.350]LU1 LTTH SGIY[1.5I 405[ L!ZQPE T i-Lli.IIGPEWLLLL lLj.'zsi5
[84]1 RLDGLPSG f.00-0]
l[hVD2 =.P0158 I AL EGQ E0.0
li4 flL~~ G ooTJ7CL1RE HP I 0.900-
iIA TiEIE ELLJI 999_9,L486 IQNTR iiC9L 0.675
Lm.[ .I L. HLs
Lff Jl AVQA5EGY f[150Il EEDQDEGI _Kj [0.500
I31 ITILHVSF I 0.0
[Tble 111M Al9es191 P401 2B
Each peptide is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight
7rt] Subsequence ifScoreF3675vvvWiR[ 0.500
L Y6 VLSIRYTTO500
1.71, LATL.LIKY IF-.67
F[7 87 QqM Tqll 0.500]Wf J[EYECRVSTF j 0.450
I~oi DEGEECR~0.450]
71 IL FPXCTj 0.450 IyGL( _HV SPYjIO.?50 1
318F§NEF SSDS 1I_0.225_1
PT 1LAG AQE o [.225L~E gEYCVI 0.225LU75I LEEGQGLTLIL2I
1GLETSDVj =0.225I 15ILPP_ LL I0200[Ti][SVTWDTEVK II 92901
[41]TVLQDAKII 0.20 0
Li7jLLLLLLASF 0T
QPEESVG T. 01 501N_2I1 S L AGS F 15 7i
K3.IDSK 0.1 2-5 7I L2].ITRENSIRR. ff. 25 I
'F T51 GQVJ I.ZF I jTrSSRSFK Lo.1i25
j353. VGILFI 125j
313fI[VSNEfF_0.100
Table Vlll-VI-HLA-A1-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acdds,
and the end position for eachpeptide is the start position
plus eight.Sia-rtl[utbseqencel -Score
6IQ-VGQVYAWAR iF0.100,F5 .ELLSPGSGR II 0100
Py?9 I TVDV-Y LDPQE [0.100
L20 LLLSFTGR L q
I Y MNJ .0.100]
1467 iRA~f9P I0.090
I.1[x D q__qLIYH-q~ 0.075I
F{j GS~_ FQARLRL1[_O.075 I
FE77I DPQDqEGIKQA 00751R[DGTLGFPP [o0762j
L1L,6~vI FH =_0.0501
[folLvPsRsmNG -2oA650
1.W9 I .iL P i 0.0501IU 1. _W LLLLL LLL50 I
L~.iL~~LT L0.050 1
ITable VIII-V2-HL11A-A-9mers-
00
00
Each peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.Start ISubsequence i 17 [GQDAKLPCLj 0.1.50
FT AK-LPCLYRG IF 0--010
KF LqPCLRGDS Y IP003J
[JJ PCYRGDG 000VY1L P D L-qlF.oo1 DT-IEI CL YRGDSGE 0.000--oT
§1r~Y~5GEQ. (000Ta le il-V7-HLA-A1-9mers-
Eah 191P4D128 jEahpeptide is a p ortion of
SEQ ID NO: 15; each startposition Is specified, the length
of peptide is 9 amino acids,and the end position for each
pepplde is the start positionplus eight.
I. I J ubsequence [Score3[iiIHDPF q§j =.250
F--j SQSEEPEG-R .015
LI71 DP RSQ P P9:99T.
LJ [7DS QSE PEj 1009
Tiale Vill-V9-H LA-Al -9mers-191P4D128
Each peptide is a portion of1SEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight. [Strt jj ubsequencj ScorI
I IDq~ F [5 q0
L2IJLIFNf -F L Ff
7I LFFWFIYYF lf76of
[Table VI II-V9-HLA-A1-9mers-L- 191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
9--]FI GLLLGSSLa9J007o
[TI. 17ELLGLR0.0
~JZ..J~!.TfFFLF. 050
~IJ18 [~EGYFQGj 0.450
ESFTRK
Fj77]I1 TEJL01 7 q
F 991 LLGL vR 13 KJLGVNSCDCERI 0. 10 0
ACFESFTKR II0. 10]-qCLLLGL
1..GI_ GLLKV i 0.050
=6 JLWYYJ050][~jfWAQGLEL] 095049_ IF2GLELLGS[01
[I I SPPASSL .050'65. SLvAGTLSV 1=.5
56 GSNPS,03OJ
I IGTLSV~cA -0.025II 30 1L..FIXYFYF.0251
Table VIII-V9-HLA-A1-9mers-191P4D12B
Each pepUde Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
[par] SFubseq-uejco[(. E
[7-21L FFLPFPLYY 0.025
Fj .iIFFLEMESH'URI 0.25
TIY_ LLSN6~(.020]
fNFFL 1F6 i3
2= KVRqPWQJ 0.0201
LDD[ LALLRIT 11.0101
175- iFF HCAFFL'T!I0.1:3]
[i Yl L.o =-1
128 D NMPEGI .005i15-5 GSSNPPATJ0
K JI A1L_1
ILA Ij KKAFRI LP3
FUD21 YFQGIF9 0.010DI]326ILL FF LEMS0.0f3
DEBJ.TE FFPP I0.=005I7 5][TLSVHHC I 0.9035
00
00
1Table Vil jHA-l9esEach peptide Is a portion ofSEQ ID NO: 19; each startI
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
-plus ei1ght.
Stat Sbsqunc _03_
_93_FFFRFIQCLLL 10031[114 IVNSCDCERG!FO.003
QIFQ 0.003j
I JF .A I I F F F L 0.0p 03j
[107 RPLQHQGVN L0.003'
:F 7 VH 9 91 E 0.003j1 91RFIQCLLLG. 10P.003
'FI_ I.FLFFFLPFP 1[-0-002.
11081PLQHQVNS]0.002[
61 I1E.AL-Gl
I 17P9I -q~CLLLGLL1i021
L' iL 'AA 0.002j
~~10.00211
191P4D12BEach peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
Lstart [.Subsequence rLj[7AGELGTSDV :FP7. 5I
[7]GRCPAGELG J10.005[771 LGSDvvT7V 0.05
,able _VIII-V10-HLA-A-9mers-111412B I
Each pepide Is a portion of1SEQ ID NO: 21; each start
position is specified, the length~of peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
LStadr [-Subsequence1 LScorei
[T CPAGELGTS F70003
I[117 -1 G EL GT SDVV F0 .0 0E7I.PA _GGTS jFo.oooi,
TbeVIll-VI 1-HLA-A1-9mers-:191P4D12B
Each peptide Is a portion ofSEQ ID NO: 23; each start
Iposition is specified, the length;of peptide is 9 amino acids,
and theend position for eachpeptide Is the start position
1_____jpus eight_.. I
ILFrt j subsequence iscorelMV- P FP LL 11.1001
7 F R LVMVPPLPS 1 1:501
RLRV1VPL0.001.1
7T2 FLRLVMV 0.000
[Table VIII-Vi 2-HLA-A1 -9mers-
L191P34D12B3Each peptide is a portion of1SEQ ID NO: 25; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus et.
f77 SEPEGC 1Y22.5013 SEEEGCS 1301
7~ PEGOSYS O 04501
77] GCSYSTLTT 0.050;
17111 m_ EPEGC -0 _09 51
1Table AVII-V 2-HLA-A -9mers-19P4D12BJ
Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eg t
[Start .1 Sbsequee FS'ore[T GCSYSTILT IO 0 3]
PEGSYSTL 1Fo
T~able ViW-V1 3-HLAA1-9rners-j191P4D12B
Each peptide is a porion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 9 amino acids,'
and the end position for eachIpeptide is the start position
1- plus eight.
L9 1 I2!L G~I 0.01e0[11[LAP~qEDS 5.00
DillADPED ?GKII.00
TVnDVLADPii00]V77 KD~vVI: 0.005
[Table VIIIAVi4-H LA-Al .9mers-jEach peptide is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.-gj_ l ubsequence [core]
71 FASASLVAGT, IO391G I
E7 S ASLVAGTL 0 .010
WI NPPASASLVj FO 003
00
00
Table ViII.V14.HLA-A1-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 29; each start
position Is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight._
[T71 PASASLVAGi F50072
[aeIXi-Vl.HLAA1orers-
Each peptide Is a portion of1SEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.,[.Start Subsequence ScreI 71 j[ GffPSK i 135.0001
F33 2 VLDPQEDSG 100.0001
43 MSEEPEGRS 7 Q
L4 EGHPDSL1 18.000
QA~~**DEGEYEC1 _.0
[453 J[ EIET-QTERLLS1[E 4.50[306 TEHGI VC 300 j
GQDAKLPCF 3.5
[86IQ ENGTLAI 2.70
[76 AELA7LHSKJ 2.700250
E [57
1457! QT-ELSPGSG L2:.5
I 18j D3TEKGTTSSj2fi
,IRVEQPPPP .0
.t2 TfAE-GSPAPSVJ {T0-*I SD VT V GI1
ITable IX.V1-HLA-A1mers-II 191 P40D12B
Each peptide Is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
[1 QPEESVGLR 1125
F11 T[GEAWLLLLL][ 151251
F6Ij[GEQNWHJ)A [09001
NQADEGE
1_61 0.L500]YTVGDK)~0
[~HLVPSRSMN O[00
G4IL~ 9ILLL MS:jF.500
[12] EGEYECRVS 0.450
[47SEEPEGRSY 0.45
[1JRSQPEESVG 030
[]RGDSGEQVG [0.250.
3181 ISNEFSSRDSI .2
F 1[ t LPEGRSYSTL2 7
1i6 FL LLLLLSF F. 2O I
L Table I1X-V1-HLA-A1-lo0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.____[Strt I Subsequenqcoe
3 67]KVLMSRYHJL [0.2001
36~VLMSRYHRRI 0,2001K I
L2 251 VSHPDGLLQD 0.150
WL .GSFQARLRRI_F §]RSYSTLTTVR L0.j
18) GTTSSRSFKH 0.12
L~qNS lL- 0.L92
05 LLTTEHSq2YYJ 0125)
1[400 RLHSHHTDPI 0.100o
11451 VLVPPLPSL iLO.100
E SVMSEEPEG 010
260] IHGEAj0100j
I9jHVSPAYEGIR 0.0
E4 QDEGIKQAME00901
[4 7RAEEE)oDI
731Ir IKQA~f 0.075]
RSNGQPLT~[0
357 MFAAUCLLWI 0.950
00
00
Table IXV1-1-L1A-Al1l0mers-
Each peptide Is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start positionI
plus nine.
Itrt SubseqUence [Scre
I F4 ILQDKPI 0.050
lL188Ji G TTSSRFK 0.050
217 NG~QP LCW 0.0501
29,4j RVDGDT7LGF 0.05
[i7fjq CTEGSPAPS1 0050
447Z LTLTTVREIET L0050-221_ILTCWVSHPGLI 0.0sq0
S-S-R-DSQVTD 0
if 30D4WELTERSGjFY .0502~ FEGQPPPS~YN 0050
1146 L- 4 1L 9511 1485 WLLLQENGTLFL00 1
Table IX-V2-HLA-A10mers-___191 P4D12B
Each peptide is a portion of1SEQ ID NO: 5; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
Is tartj Subsequence IS-corej,'T G~QDAKLPCy [3.750
17] KLCLRGI d .0-10q'FI1 LGq9RKLPPL7Fq.005
Tabl IX-V2-HLA-A10mers-K 191 P4D12B
Each peptide is a portion ofSEQ ID NO: 5; eachstr
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start position
I.L PA.9J[S:9.[7L LPCLYRGDSG 09-0O3
F' _CLYRGDSGEJL.00J
71LA ~S!~xGEQY10.000
,[Table IX-V7-HLA-A1 -1 Omers-191P4D128
Each peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine. jFsi.a7.I __*Subsequence~ Fs9L~I
FlHTDPRSQSEE~i[7ki R.SQSEEPEGR
SHTDPRQ 0.01.5,,I.§QSEEPEGIRS 10.02
f[ 7 (TDSQSEEP [0 000
~Table IX-V9-LA-1-0mers.-191 P4D1 2B
Each peptide is a portion of1SEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachIpeptide is the start position
pusnie Subsequence ScorejI
I 1 ITFNFFLFF 110I 281 VVFHYYY-10
[Table IX-V9-H11A-A1-1 Omers-
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
Start I Subsequence. JFr
117~ SCDCERGYFQ _5.00I HOACFESFTK IF.00
L8_11
IA2f ILVVFHXYFYF .0.5o
Lii U±RTFNF [ii~ LAURT 0.5001
SSNPPASASL 0.-3 09TiRRELLAGILL P]L.2251
12.j FLPffPLVVFF. 19:-2091q101TLSVHHA9FiL.9
I 77J ACFESFKRK 112.290L9U .Q GL
b'5] NSCDCERGYF 1F0419I
1i!3 ILVNSCDCERGY L0:1
76~ CACFESFTKR F000
T I LLf 'FY.00]
LTI LLGLKV L0A-0IFq. J1
E74T! I GLELLGN 10.0501SV.HGT!fY [0.0750.
L31 IYFYYFFL 0.050
F 8 '1SNPPASASLV' 10.025]
Fl RELLAGILLR 0.0251[112! QGVNSCDCER-j9 110051
69 J~GTSVHHac. P7.251
LRITFNFFLF T9.025,,
00
00
Table IX-V9-HL11A-A-1-l0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptidle is 10 amino acids,and the end position for each*peptide is the start position
plus nine.
I..821 -FKKKLKIK .2291 VFFIYF F 025
[16 1[ NFFtLFFlPF_ 25~YFFILEMEHY 005
LGSSNPPA _0.20I
1[ 62 ASASVAGT 10151J1ESFTKRKKKL [IE175
FL .IL NPPSALV 7t13[1'21 11 RGYFQGIFMQ 10.131
YARTLSYH FClaO~
11051 KVRPLQHQGV jf0.0101[1-ILLRITFNFFj 1ojI~FESFTKRKKK '10.010
I_49 1[QAGLELLSJ ~poi14 iFYVqAGLELL [.olol
I±!~1LVNSCDERG 0.1
I..LQCLL 0.010Dl. FIFYFEYFF 0.1
[F SLAGT LvH 161L1.90I LLLLK'RPL 0.oj
[4811 AQAGLELLGS 1000ffl GLLLKVRPLQH .005I
I 5LGSSNPPASA LO.005]I LGLILKVRPILQ 905
T73, VHHCACFESF_]KooSIQGIFMQMPW. jo.LLRITFNFFL I:2I
11767 R PLQ HQGVNS] FoKosiT'8ilFMQAAPWEGT .05I 61 KKLKKAFRF q0031F117,[ CDCERY FqGI0_3]
[Table IXHAA1-l10mers-L191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptidle is 10 amino acids,and the end position for each
peptide is the start positionpLu nine.
lStartLubsqeneIsoeI93j FR FICLLILGF7:3
FLTiLYFYYFLEM 10. 00120j1 ERGYfqGIFM 10.00
L22 YF QGI F6.7003
FT.3 YFFLEMES [O.7090
D[jI HYVAQAGLEL 000[so I ALELLGSSN 110-003
I
I 7 LSVHHCA F O.7002j[1 1 FN F1F L H .i I
I LLVPFLHQ 10.001
FL[j ARFIQCLLGL o1
K..l GIKY 19 0.002EachAI petd i ortono
[fASE -DN:21 IahFtr
I _rtI Susqec .661
F ll GRCP--IAE LGT10m 0251
EachpAetid s p pono
ITable IX-V 0G-HLA-A1 1 Omers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
M7LmLTSDVVT [EO1]L5ILGLTSPVE 10.0011
IK1TG-RCPALG 0.000
Table IX-Vi 1 -HLA-Al 1Omers-191P4D12B
Each peptidle is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptidle is the start position
plus nine.Jrt LJ&bseqyence Ls coreIMI.7 VMVPPLPSLN
1i.9JI _vL sL MI LY__rT-L1o~oo
LE7 0RMPLS[.003j[DI1LW LLRVM lLp2j
lifli RLRLRVMVP] 0.000I
[IlLRLRVMVPPL 1[.7ooo
L Tble IX-VI 12-HILA-Al-I Diers-i191 P4D12B
Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptidle is 10 amino acids,and the end position for eachpeptide is the start position
___.plus nine.
3 MSEEPEGCSYj jF SEEPEGCSYS_jo.450
F_7, [EPE GCSYSTL 0.22?
00
00
Table IX-V1 2-HLA-A1 -1 Omers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for each
peptide is the start positionp lu s n in e
Lstartl Subsequence i[ScrelLull CgSYSTLTTVR]0.5
ITLE(CSSTIT_7 !EO 131
GCSY TLT j.010~
j*VMSEEPEGCSjO7.05J
1 Y! SYSTLTV 1EO [900~PEGCYSTT 10.0001
Tbe IX-V1 3-HLA-A 1lmers-191 P4D1 26
Each peptide Is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
[Sj Subsequenice jlre
Lo-o1
F--1 DSqnTpy! J[ .03DO
i. WLDVLADPQDS110.10
W37LQYTYVDJLAP 0.002
110 51LAPQEDSG-K9 b01
ablIXV1 4-HL-A-Al1l0mers-1
I191P4D128
Each peptide is a portion ofSEQ ID NO: 29; each start
Iposition is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine..
I..Start 11 Subsequence IS-core
[ale IX-14-H-1-1 mer-10,
Eahpeptide is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.
1.§t.qj Subs,!quence _L[coreI[i SSPPASSLJ [0,3001
=07I ASLV AG TL S V 1T NPPAAs_ LV T.0251
[T]LAS aAGTL. 0~.015S
[2 J[SNPASS0.-0105-
P77! LGSSN~PPSA 10.00951
Table X- V1.-HLA-A201 -9mers-l191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachppde Is the start position1_!plus eight.
q]1 Subsequenice. iL 9I ~LLL.F9!4 12.546~:
[T8 L LSF T F2 I59? -80I
[KT0_iIS~9L 1 [7ML0411
F1 EMWGPAWL L72§~
M)2~ VLLR NAV 11. Ii
742? WLGQDAKL 1111.7I203[_, _TFHLV 111.5631F341l SASM1114101 SQPEESVGL j18.880
Table X- V1-HLA-A201-9mers-'191 P4D12B_Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight._
lPti Su. bsequence j L~or
S351j qVVIAAL i 7.309
LESVTJ .288
[10 jWGPEALLLJI4.471
1l32JELTDW 4.122
1± L SY STLTJ34
L24 I VLAAV _2.856IILLAFT GII.1
1253]ELL PPNLWHI L.9[i21GLLQDQRIT..2.261[Ifl7iL v~y9yil__~..2?22
L~jNLDGSVL 21151
jGY~Rsj1 .775jE2I[DNGQPLTCV 1
[5~5j RIETTEL 1.7036]
L87iGPLSGVRJI68023 1 FLQDQ0TH I
3 Th
L6 21EV 9AY1v Fl.32
I.1Z.LLLLLLA~L.I.P98Ll iLLLLLAL J[1P78
I3fl F _ALLEo~ILJA.7
[i2611REGALCL [_2A.
00
00
Table X- V1 -HLA-A201-9mers-L 191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
li tart Subsequence JF sre I
390 1 LT L. 9k I
j(M?8 FvQEN1LoF K I
I2661 AmL cLSEG] 1 0.8
IF'!6lsLTTA IiI__EAWLLLLL .425_I
(11IDGYEGRvj .1
113061[ TT EISG IYV [0O.340
Jj~ AEEQGL 025j
P~flI KQVDLVSAS
F18JMT-QKY)-EELIOa2747[1 3L iLnsyF-9,. FT2:4- I
14501 -T-!KV TT123 71THILHVSF 088P-1-71[ N9 9!!TpW 0.1861
1.20 j LLLA FTiO781
144811 LTTVEITJ 011112851 IDGq!PPSGV f( 0.164
Table X- V1-HLA-A201-9mers-I. 191 P4D1 2B
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
iI plus eight.lq]aYtiusequencej score]
1.4 7 1 FDQ DEGI KQA1 0142
1L332JLSSRIDSQVTV][ 0.141]lR'Tfi 0LSRHR 1 41I
1z221TCWSHGL I0.139
1P2 L -H G!EG-I014JL~eII QLTLASC 0.120]
I ?3 ii ASFTGRP II 0 ]0j
[TbexV2-HLA-A201-9mers-}191P4D12B
Each peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight_____
jSaqtl Subsequence 11. ScoreFY]_QDALPC L93Jt1I'- -GE~j 0.048
177 LPLYRG~qDSJL0-.T0TJDAKLPC LYI 0.000
9 LyGDGQ] 0.90
Table X- W7-HLA-A201 -9mers-191 P40128 B
Each peptide is a portion ofISEQ ID NO: 15; each startposition Is specified, the length
of peptide is 9 amino acids,and the end position for eachpeptide is the start position
plus eight.
stq [Subsequence scrj
R-SQSEEPEG FP 796001
WTal -V-HLA-A201 -9mers-1f~be 191 P4D12B
Each peptide Is a portion ofSEQ ID NO: 15; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.-itl Fsubsequenej1 S
FT1I TDPRSQSEI000
[LI SHTPRTSQ 0[,000
T~be 191P4D1281
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids.
and the end position for eachpeptide is the start position
plus eight.
I1staiiq seq uence 1
s. Lo-HYiIJ
I[NJFIQC LLGL DLl~z
181 ~FLfFFLP 12.194j
LG7SNPPA] 8.4j6j
K- 2I Eff 1[IFTL
F7 ILLRFFI 2-7191
11281 MQMPWEG.85 LF1 FIfYFYFF !11.576
IEE7F1TLY I 59..FT [LLGLL [TK.57.[F 21 FFLPFPLW 1.
00
00
Table X- V9-HLA-A201-9mers-191 P40128
Each peptide is a portion ofSEQ 10 NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight. [Startil ubsequence I Sor
9.1.IQCLLLGLL 1 1.io0j
F- 29QFM--EG-iL .09702407 LE ME S HYVAf 1.02
L1 RGYFQGIFM 0-.5-71]
L LVFFY-FY 0.337GLL R I TF N- Fi 8 0
L [NPPASASLV 0.454j[]jLL!SVRPL II 0403]
[42J[MS AQ [t IDL 15*3
Fj- ILGTLSV IPAJ 0.255158 II SNPPASASL. I F- 9-]
ULjRITFNFFLF II 0.113[L7LA-§LYAG. I 1lL!PiI. LLRITFNFF L0..
LYIYFFLEm-I 0.085 J
NE68 ILLRVy J 0 .055
FRFIQCLLL1Lo~
L 91. ffIYFYFYJ~4LzUL.Ly~IJI .039
i 31 ISASLVAGTL 10.0391F126 iIGIMQAPWI 0.387
PLW[ F-F 0037-
Ii[ HCACFESFT, .0395[Ti-f LAGILLRIT ij. 0.033-1
f119 q E RGYF QG 17 0029
ITbe X- V9-HLA-A201-9mers-9iP4D12B
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
F07] LLGLLK1VRP]F 0.025
Iii II V QGVD 0O.0167
Li F§ SFKRKKKL 0015_
M4 ITFNF _ff 0.010
QAgLELLG;I 0.008'qHCCFE1 0.007
[0.-006
L IELLG§SSNPPIf_0,004~I P.IIFFLEMESHYI LOP0 I
l.A 7 I qAGELS RI 0.003l.FI9J 5 IIL9 0.002j
L5TI LELLGSS NPLO.024 [i lL-VAP.1
EEEM2RKLL-A!9qGI[ .0.0021
I P8jLQHQGVN Sj 0.00211 .1 LFFLP ii1 0.002
RI ]GNCDCE RII. IFT6 F7fAC:2 EThI .001TO
§I51 GSP PA§, oFPo II x FflEMVE 0.001
K1LHA97 DL-9! 1F[T~i GILLRITF7F 00 0 0
Table X- V9-HLA-A201-9mers-191 P4D128
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.IStartI Subsequenc1.e.j 7
.LfZ I.S NPPAA F Oq-7Fl1177 Ic .9 F~ P000 1
Lu. ItKSCDCE9L 9.~
;fTable X- V1O-HLA-A201.9mers-1 91 P401 2B
Each peptide is a portion ofSEQ ID NO: 21; each start
Iposition is specified, the length1Iof peptide is 9 amino acids,and the end position for eachIpeptide is the start position
plseight.9
Seuence'1-r I
.7 RLRMVPPL 11.03
'F7iF RVMVP-PlPS K 0.2:4]
11 .000 IF-47 L VMVPPLPII *K0:00
Table X-Vi1 -HLA-A201
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide is the start position
plus eight.lStart:l I Susqec _§roJ
LG TSDVT 11177K2
F5-- FAGELGqT S DV F0029.
00
00
Table X-V1 1-HLA-A201--9mers-191'P412B
Each peptide is a portion of1SEQ ID NO: 23; each start
position Is specified, the lengthof peptidle is 9 amino acids,
and the end position for eachpeptidle is the start position
*plus eight.StarJj ubequence 11[Score
SCPAGELGTS! 0.077P-AGELGTSD jj 000V[7R-CPAGELG 1. F.-0
9rers-191PQ12B3IEach peptide is a portion of
SEQ ID NO: 25; each startposition is specified, the length
of peptidle is 9 amino acids,and the end position for each
peptide Is the start positionpius eight.
jStart j Subsequence lScorei
[TF7jc GCSTLTT ILRm9PEG-CSYSTL 0.014 Jj
IDfEEGCOSY [000I
11.1 IIMSEPGCS [Eo007o
L Table X-V1 3-HLA-A201-9mers-191P4D1 2B_
Each peptide Is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.I !9rtII. ubsequenceJScr
1~ SQVTVDVLA 1[.0.50 Fl7 WA PQDJj.253FflVDVLADP 0j.003
LADPQEDS 0 II OOOJ
Table X-V13-HLA-A201-9nmers-191P4D12B
Each peptidle Is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.Star][SLs uence.1 _scoreI
[E[I[ADPEI 11 FOO9J
Table X-V14-HLA-A201-9mers-1 91P4D1 28
Each peptidle Is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end positon for each
Lpeptide is the start positionplus eight.
[Start ffu Subequence F--iril-~F(7] NPP ASASLV jFO.ffl S nPA-sALjJO.- 13flJ
L17 GSSNPP-ASA1 T. 0q032]MI] ASLVAGTLS J[ .900
F1 L PA§V I 0.000
~fTable XI-V1-HLA-A201-l0mers-191p14Dl2B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptidleis 10 amino acids,
Iand the end position for eachpeptide Is the start position
_plus nine.
I359.i LCLV\y 4256
358 j L-F-cLYY924. 6741244 LES~Ii2S230FL-LQDQRITHi 1167.2481
81 LLSYG9LHV IP 8.2381
215 1 SMNGQPLTC 115.534
IFTab-le XI-V1 -HLA-A201 I Omers-191 P4D12B
Each peptide Is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
pRlus nine.ISta tisbsq u e[ 1.
ILHVS FL AE A 73. 8
L -PAW 72.031252_ GLEDQLHI~j4.2
[Y6j? civwvj[!:. FI3LT9T EH SG lY2Y9j.0
RLDGPLPSRL 27.821
3 5-4iIGv -IAA! L L124.93
L!441LYVPPLPSL 20 LL4LASFTGRCJ 15.4371
VTDTEVKG181] 1377
11Q .i VGALcL[.8I
IPE 8.453VI QDAKLP1
LP85[Z QENGTLR3.18
[381LT 7.560jI 447 _ILTYIEIET. Ji
350 VVVVGVIAL Fo9J
5L IALLFCLLV1 .4
[2 7 GQPPPSYNW 6.3
WGPEAWLLL .4
158 IALEEGQGLTL1 5.6095
NEFSSRDSQ
164j [LLAS T 96:8:]~
00
00
Table XI-V1-HLA-A201-10mers-191M4128
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
__._plus nine.
LS it. a-rtSubsequence I rF
1.34 IjLVSASVVV1L_49j9
[1 VQADEGEYE; 3.511
WVGVLL1[YV 31 78_
jLsIWLLU.LLLAs 112.917
1118 I LLLLLASFG ILZ.Z.!9.l[T2 IIYEqfRV§TtPAI 2.5771
t132] LFASQAL
L[7I LETSO) VV 2:16FSSRDSQVT
P21 r.RISQVT2.088
L1TTP2QRLLR.l 1.8- 79]iL. [M79w TWGQA L.891
FE ]Pj LALHSKYGfl .866
9KANHFVI
3J AvWG .775]211 M TSEFHIiIF.721]
Pii! 1:SV1 FN VJ=.608
[370 VGQA J 1.2220
~OjFMSR F 11 208
32 LGEETSDVTJ Pf991i
[T~f E LTLT TNSI I. 0.782
[39]1 VVTVVLGQD 0.739
Table XI-VI -HLA-A201 I Orers-1 91 P41 2B
Each peptide is; a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
LrtISubsquen~e] IS(creJ
(353]VG-VAALLFC.69YNWTRLD280]GL 0.692
[3:iT_QRiTH7IL'10.60471
IPTLTc vvSHPGti q. 5o04
6, VAWARVD 050
[I 2 F GQGTLAAS 0507TE I
[1 APSVTWDT I 0.454]
[T's EAWYLLLLLL I045[176PAS TW 0.365~
E1MNG Q PLT C V 1 [f8]qKYEEE-LTLj_ .3I
L~mi1CLSEGPPP~~0.306]L29JGL,_QDQR [.j0.276.
1501 PIWsLN PqtALj 0C.237
M GP 0.226
;112 IK VLLRNA V9QAD .216j
T6i 5GLTLAS~i .A§i
119 LL-LLASFTGR I. 9Y7..~1FTGRCPAGE [017
36J QE7DSGKQVDJ[0.6
9- E Q _P R N -1 2
'i 4_ YSTLTTVR~ 014
1 41SVRGLEDQ .4249 .S99i L.140
F Table XI-V1-HLA-A201-l0mers-191P4D12B.
Each pepfide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
,[Sai Subs equnce SFcor e
[K][NPLDSL 0.1394]091 RSQ7PEESVG 1 0
FLk]GF9 LL 0.1391
156 GPALEEGQG 0.139
14511 IVLVPLp§SLN L:3Table X14V2-1-1LA-A201 -1
l0mers-191P4D12B_ Each peptide is a portion ofSEQ ID NO: 5; each start
Iposition is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionIplus nine. I1
MIt Subsequence Score]
MIJL qAKLPCL1 2.23]
10 LYR DSGEQ]I o
FLQDKC R 10.0031V]L__LP CLYD [p j
[T7 DAKLPCLYR [0.000
Table XI-W-HLA-A201 F Imers-191P4D12B
Each peplide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
.usine..[t7 jj.Sy!bsequence. Score
[F_7!sQSEEPEGRSII 0.004_'
151
00
00
[Table XI-VW-HLA-A201 1 Omers-1 91 P4D1 28
Each peptide Is a portion ofSEQ ID NO: 15; each start
position. Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
EStartjj Subsequence ScoreF iJ1lHHTDPRSQSJ, 0.0006 1
[TDP R-SQSE 0.0
F H HTql)s9 E LQOF T HSTPRSQ!:LPF0.PPJ
STable XI-V9-HLA-A201 -Inrs-194P 11
Each peptide is a portion ofSEQ ID) NO: 19; each start]
position is specified, the lengthof peptide is 10 aino aisand the end position for eachpeptide Is the start position
plus nine.-
IS LStub;sueq u e nce Sore
FI1YFYFFL1 7861.87
HFLFFFLPFPL 2108.811
FiEL LRITFNFFL[3.50PLYFF 1 .429
2] jFMQMAPWEG[F23[T3JIf FLEMESHYVI18.538
LGLVRPL1670
DC] IL ITFF J2- 4.898
157-1%12 K FPLV F Lt3 .j
I-T± IAL -VAGT7LVJ 1.680,105] IlfY!-LQH9 11161
ITable XI-V9-HLA-A201- 1l0mers-191 P4D12B
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
Subsequenlce IFssorei
II F53 ]LEL--GSNPPA7 9 .j
.1 3][LEMESffyV [:O600j
IF! f -T 171. 30 1
D I T FF fYfYLP.4 0T]
5 I jPWF lF[ 09.32 9I 102j[GLLKVRPL9 j F.276j
F7I. VAGTLSVI-IH 0.270GTLSVHHCA
08PLQHQGVNS [0.251.I
E-l[ Ii GILRIFNF I 17
[Tf]lLSSNPA I 0.127]
[5I FLDA. V F
I 126j GIFM(QAAPW[ .7042.
[4j MSY 0. 040]
F 80 -11 <RKKI I*09
LTable XI-V9-HLA-A201-l0mners-1 91 P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.[S t artl FSu-e qu en~ 7ce .]e
F 2] .SVHHCACFE 00O38
AGTLSVHHC][ .032]62- 1IAS Y.iLp
R-0 ILEMEHYVA 0 01711
43J ESHYVAQAG
LM7.1 FF LF-FFLP]17 000FI KALE-LLGSSN [o.007Jf
FT 4]fY4jIFQGWAPfJI.O07liii AGILLR-FFN 0.006_
EF] JPA ASLY AGT
I121 [RGYFQGIFM 0L024_FELF7J C EGYF 0004]7 IHHCACFEFTJI. 97I
QQGVNSCD [0.003
GVNSgDCER J[0 ]0[I96][§L LLLGLLK .LP. 03I
19LQHQGVNSC .03
M4 J ESHYVAQ 002
G 0.002
00
00
Table XI-V9-HLA-A201-110mers-191P4012B3
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the length
Iof peptide is 10 amino acids,,and the end position for each
peptide is the start position
t[StaJl Subsequence lj SoRej
I !-flLLKVRPQHQL.992L-E-LLGSSNPPi0.00iI7 RPLQIIQGVN 0.002
[TFj LGILLRITF 0.002~
47 i GiLLL 0.002
tF iNCDCERGY 0.0
16jj NFLFFFL 1 0-q L71
FLj K zmi -EF~RIJ0.0 0 1I !P IIK2LKT< I 01 i
3 ]jASLVGTLSF 00 j
5~1. G1LELLGSSNP !LO.001 iFf71iISVHHqcACFEL.001 1F17Jlf-YFLEEHY LOO-jJ121 FfLFPLF A 001]II f9 LKKARFQC]qEL
F11 FLL /PwQ 0001
[125j FQGIFMQMAP 0 000
GSSPPAS 0.000
STable Xl.V1O-HLA-A201-mers-1 91 P4012B
Each peptide is a portion ofSEQ It) NO: 21; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
____plus nine.
WI9LGsDvy)vTYYJ AK?IJ9JlKIS0Y3 I 0.499
Table XI-VI 0-HLA-A201 L. lmers-191P4D12B JEach peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peplide Is 10 amino acids,and the end position for eachpeptide is the start position
pRlus nine.
MFWL-GTSpV\'il 0.2201MF]PAGELGTS-DV L92-L
0.006-
LLTGRCPGELGLoJ o
Table XI-V1 1-HLA-A201 I Omers-1 91 P4D12BEach peptide Is a portion ofSEQ ID NO: 23; each start
position Is specified, the lengthlIof peptide is 10 amino acids,1 ,Iand the end position for each
p eptide Is the start positionplus nine.
ttartjL:S9se 91Lnc 9 el
]VMV-PP LSLN I001ALRLRVMIVI 0.073
f05 LRVMvPP LI1j.043[-4IIR!LR,VMVPPII .00R3110 yPLPSLNPLT..2I
=6 LR YvPLP1I 0.1[7 ]LRVMVP.PLP.f7ULAR LLRVMVPI JB0000
I TbleXI-12HLA-A201 lms-19P4D1 26'
Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the length,of peptide is 10 amino acids,and the end position for eachpeptide is the start position
p lus nine....-
Start Subsequence iiL.crEIGCSYSTLTIVJ 11.044.I
i MSEEPEGC1 .788, 1
Table XI-VI 2-HLA-A201 L 0mers-191P4D12BEach peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
~~plus nine.
L[Lta~j Su c eL~il!~Fs 049
FL- LJEEPEGOYSTj 04
]10LEC§T. =O901
Table XI-V13:-HLA-A201-L i mers-1 91 P412__ 1
Each peptide is a portion ofSEQ ID NO: 27; each start
Iposition is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.Dart bequence.I[cofeJ
MLQFOVDVL- I~
[Wt~iSwoDVL 002J[I][vLADPQEDS]ffK]T
E4~I m'M =0001
D 1 PPQEGQ[ 0.0001
Table XI-V1 4-HLA-A201 -I
1 Omers-1 91 P401 2B--Each peptide is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
00
00
LTable XI-V14-HLA-A201-I1 0mers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthiIof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
1Startj ubsequencejj score.L1ull AS-L VA-GT LS L F15.6 F41 NPPASASLV L 0.541
L-Y 000=8
(Table XIlI-VI -HLA-A3-9mers-1F1-Z 191 P4D12B I
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for each
peptide is the start positionplus eight
[FLrtj[ seque ce I c r
L[7 LA F LG]~ 000JfTJ51VMSEEPER .000j
L~zo LM RYHR [aooo
1 IILLAF IL 4. 00L3~zL~~wvv.LjI .050j
L 92iLT LJI 4.OO
I L qY 99A~ 3.000
1)821 SVVWDTVK O 0IK L~YQVW I L1.800368]jIVVLMSRYHRII 1.800
Table XII-V1-HLA-A3-9mners-1191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
,and the end position for eachpeptide Is the start position
plus eight.[Start subseq-uenc~[ e
136-311 Y 5LLvL FE.350-.t1-61SNE-SS-R_]jF 120k[252 GLE-DQNL Vl_1.200q
IL 78 IL I1.200I[366Pj j WMSYL.900j9
T1Jl KckY.I m 900
:115 IL LL~LLfl=.900j89 I HVPAYER FL 6qT
[485 II FV-qENGTLR[-0F~TIREQPPP 1 0. 600
[392 q P.ENIR 6Lo 0
351 -j V V AL[ LLq I 0.3 040
31 =Y.vj039
1)12I yLRNAVA L .300L2T PCl FPPLnj 0
LL6!I.I =LLSJ .3q0
P EGVIL~ j 0- .270
FIf =51 F9 2~:70J1 5 51L qN--v H-1 0.21 6
fl~~ [yyV VIA 1- E2180I 1861 EK-GTTSSR II.p89
1y9. SFHYPRJ L0.1801
I ii L -LL LLA 0.150219I. 7 UQELALHSK i~:~i
I Table XII-VI-HLA-A3-9mers-1L: 19P4D12B
Each peptide is a portion of1SEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
378 IFL QA7TKYII 0.12035L~IL!YSFLE o
FT.1U p LLLASTG Y-290
P35 ]IGS FALRL 0.090
LFTII DLVASMVW Tn.00
L 4FEPLPsGJ[y68 jL--
IXJLI][PHSKYGLH ][0O760
[3lyji I I -9
[IJL 7SRSFK] 060j
121g. IILRAVQAD TLo C
I 345 LVSKsVVWJ[-=060_
LF7-iI 0\Y i 0=
1471 D KCFR [0054
PI 20 LTTESM 00460
D39 A1LTLT R 1 0.04
00
00
ITable XIll-VI -FL-3ges
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide Is 9 amino adds,
Iand the end position for eachpeptide is the start positionL pluseight
[StartI[ SLbsequence rej1.-8fllALEEGQGLT jt05j
L66 II.AMLKCLSEG =1..045
Fi--iRL ~n~ 2 J _0=640I? ISFPLKD NS S1 I 0 .0361
1276 EYI.?~jliI 0.036
F3~ I7fLFAAvR n 0.030 I
ITable XII-V2-HLA-A3-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 5; each start
position Is specified, the lengthof peptidle is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.__
I Strtil Subsequence 11 Score jDi K[CYRjGDSGEI 0.100
Wi]E GQDAKL C L FI-m91i
LPCELYRGD ][1E0.]
g[III_LPCLYSI0.004
]L LYRGJ =0.000
L 7-1 LYRGDS9GE] .000]
ale XII-V7-HLA-A3-9mers-1191P4D12BEach peptide is a portion of1SEQ ID NO: 15; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for each1peptide is the start position I
p -__lus eight. _j
[E i aL squene[ScoreJ
1181 SQ: EEPE GRI .1809 j HDRQE[T.00 7I
Table XII-W7-HL-3mes191 P4D2
Each peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 9 amino adids,
and the end position for eachpeptide is the start position
plus eight.
[07 9SEPEG LoOOLg1l HHTDPRSQS EL.S7 I
lli R 9EEJ 0.000I]PRS QSEEPE 0~.001
M] SHHT D P RSQ 7000
TbeXII-V9-HLA-A3-9mers-]Tb 191P4D12B
Each peptide is a portion of1SEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight._1P Strt ubseqyence II Score
[ul_I1FFFF.000
PILL(Iu±LLKV~fl 6.750j
Liii LLRTFNFjL6.-0001
F] LFHY .500
P- ]EFPfFW j 4.50 0
WL. LI
'FiflKRITFNF=FLF 1.800 fL13[GN SCDCERI 1.200]
Fi-ffCLLLGLLKV0.0
]L o.54o982 j F KRKKKLK j 0.500
FTable XII-V9-HLA-A3-9mers191 P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino adids,
and the end position for eachpeptide is the start position
plus eight. Fs-taRt I[Subsequence IL cy
.1.1FLFFFLPFPI 0.450JL ]KFRffQCLI 0.405
0 F-.Tn
L ELGSNPP 0.2001
M12 I[ ql-LKyRPLj 10.1 '35 1FI~ 4 -IYyV 9L9 [0121]j[80:I ESTKRKKJ0.7
g69jj GlSVHHCW j 0.0680
F! -5I FFLFFLLF0.05417I[]LffFfFLPFI0.054I
[F.1L 5 f.945 1
[2KjFIFYFi[ 027
I FYFE E10.027]
=24I ff iL-24
FoFL 9 y 00ELGLV P 7201
Fj1 LSHCA NLO.0
FW~~1 L 1F oi[86l IFET-q KKLKF If_0 .012
11051 KVRPLQHQGI1 .0091191 LFFFLPFPL 'I 0.009-
00
00
ITable Xl-V9-HLA-A3-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptidle Is 9 amino acids,and the end position for eachpeptidle is the start position
plus eight.
[L-t~q S-ubsequence _I Score
11.DFLRITFNFFL- 00896JLQCLLLGLL 8
1.741 HHCFF! F0- 0008]
LI~.ILMEHYV IF 0.006 1
IiN3LSFDER GYQ F T 9
RELAGILLjjt005[A21z N4 WEHY VAQI 0.005
I6.1GSSNPPAESA J6L-5-[lj.-IFFFLPFPL .0
I 40 EMESHYVA P0.041
F!7 L N AFRFQ II0004
LF i I HCACqFESFT jO.031
[T6i NFFFF!FLP 1.003]LI. I FFLFPW. =0.003
[63 ILSASLVAGTL I0.003
I T 67 VGTLSVHH 0.002ffl]K RGYQGIFM JLO02j
0.002
[47 II YFF LEMESH JR 0.99271621 ASSVG 002112 RLGFQGIFMQJ_0.001
.RKKKLKKAF Ii 0.001o
Table XII-V9-HLA-A3-9mers-L....191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptidle is the start position
plus eight.
F24jPFPLVVFHJ om
i 9jE RGYFQGIF L9f. i
1 Table XII-V1O-HLA-A3-Smers-I1P4D)12B3
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptidle is the statpsto
plus eight
I[Start ILSubsequence I Scorel
[T7 [GLGTSDWT I LO.oo437YJ] [OPELT][ 0.0041]
~1L ~!§YYTV CI01]
FT7171f-- I9~ D Ilq.99'EP GEL] 10.0001
able Xil-V1 I -HLA-A3-9mers-191 P4D128
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptidle is the start position
~us ight.
F1. tart Subsequenc L crelF±@PPLPSL 3.38J
Fl] K-RLVMVP 101
FT][ QARLRLRVM- 0-001
[Table I -I 1 -H LA -A 3 -9 me rs 191P4D12B
Each peptide is a portion ofSEQ ID NO: 23; each start
position Is specified, the lengthof peptidle Is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
FS-iart Subsequence][gTor
L FA 1LRLRVM7VL~]F .LLRVMVPPP [00
Table XII-V1 3-H LA-A3-9mers-.191P4D12B___
Each peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 9 amino acids,.
and the end position for eachpeptidle is the start position
plus eight.
WELLP9 Ps-J 0.020
F -1H1Ipy 9_Q .002_YALP Joo1j
4Y]LYPVLDPQE 0.0
Table XII-VI4-H L-A-9mers-1191 P4012B
Each peptide is a portion of1SEQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
eight.
I tartj Su§ bsequence ;Iscr
7i7[GSSNPPAS II 000
NPP SSLV I 0.00[P LSNPPASAS[- KLO.
[77 L SLAGT Fjqq0002771 SSNPPASAS 11 OJ000
00
00
ILL LVAGTL S .09L~
lTalex XI-VI -HLA-A3-1 Omers-
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide, Is the start position
pius nine.
[Stalubsequence IIc e1K2 3jAI)LDDGK -LOM9 [ILLLSFTGR 18.0003
LMSRYHRRK][9.go![25211[9 GLD-QN ml I 181 100ofI II11 TLRENSIRR 18.000*F1 Ti~iLLLLLLLASFE1.500 IIF 81 M WqP wLLFl4-050 IKOC LRLHSHHTOPR[ 4 000
FC6 J[IGREAMLKJI 4.000][3s911 LLFCLLv~vyvVIL.0-001
U LE L7TL.80][L2LG~LLQIDq i] =1.809]
LYfl[WVLMS-RYR][ j-
[2[1VLnQDA[ L1.500[362] cL50
[L 754 GVIAALLFCL, FT .215112571 NLWHGREGA. II .0-j
:yLhv ;sRJ.F 0.9001[239 ILSLAEJ[0.
LE:CoiLTHR!. ii 90~p
F1674 STE I O.600L
P68j1 LVVLMS Y::R0]
t] RAEGtHPDSLK I 0.450]8 L FCLVk VY Y 0450
Table XIlI-V1-HLA-A3-lomers-191 P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
Runine.
Ir W:Jj GVIMALLF1IOAOOI]
F4--flEQVGQVAWARf =.36o.
J[ 4[ R GPLs~ v] .300 1
I FT4ILPW-A-Mqi. ILT29KPq PI LDNSSCSVJI 0.270o
I[Fl?0j LA IGEIT 0.27001
llIF4!1L~VI LPQ0.19. I[-3IL11__h~qyENS I ]wO]
vSFLEASV il0.200
F51 LLL sFT10.81-9
T4]LMy 0.090]8
F A-L-LHSKY -T i~~
1789 G S I 0..120
Table XII-VI-HLA-A3-loers-1K191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,ad the end position for eachpeptide is the start position
.jusnine.
Fi-irJtLy~eence [(Scre][±6!LQNGTL RA2KLo.09-0
[Th 11 'YqK- I -0[3D6[ IHIL
U28JLRsTFPAsfl 6.961
127011. CLSEGqPPPS j[N060I 47J[GIQAMNFV I0.060j
I. =jF~NTR I0.060g205) TSEFLVPSR] 0L.060
I-Ill GPEAWLLLLL 1[ITOR4][218 LGQPLTcYHI 615a41
L99LTh9?tPTTE] 0.045[272] QPPSY 1[0.045]
135 GFQARRLR 0.045I
a~j]LLLWWVL ]ff041][341 ]QYQLVSAS§ j 0.0413
N5][ EETLTR [36
Iq IT ILLEg. 3 61
I I cwOi 03
Trable XII-V2-A-A3 -1 mrt 191 P4D12B _i
00
0
*Each peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthI of pepfide Is 10 amino acids,
and the end position for eachpeptide is the start position
plus nine.
LStartll subsequence Score
[Z,.iU19CD ]L9L F366Q[6_7[!PLYRGDS 1v 8)
I77I PKC pYR 0,.012
1-I IGQALC II QID NYRO:GV 15; eachstar
Eapeptide Is ar poition o
plus Ine. 1
[st-art L ubsequenc ej[Scor e
[Z11]F SQSEE 00]
LFJ[]PSQSEEPEI 0p.0900j
,jffHHDPRSQS§E 0.0001
K]LRSQE EPEG IR 0.00
Table XIII-V9-Hla---I-mers-S191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
I startI Su bsequence II.Sco~nI 8 I FY F 1L40001
18 II FLFFF P 9051
Table XIII-V9-HLA-A3 10mers-191 P4DI2B"
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peplide Is 10 amino acids,and the end position for each
peptide Is the start positionplus nine,
M [ldqueneILF cor 900
I 6. LYVF:F .100
'IF GR-ILLRIT FF I4.050I 2! RFFLFF L3.600J
FL E S FTRKI .250O182 j FKRK KKLKJ[2.000_1
[T.iT9J:LT CACF [12:000F! t. FLLKVRPLqH] 800I
[911ICLLGLLKI i:20 I
qL 1.20
L-3_il F LVAThSVEIO7KP~J LLGLVP 1 o]
I 7[CCFSFTK
I LjjI HVA L.ELL I9130 II 7FFYF L001
FU I REGL] 0.54
69 ITLSVHC~c 0.45
Table XITI-V:9-HLA31Oer
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
Lstartj I Subsequence]
1.103 !LL~v Lo745
I66jLVATLSVH± _L3 0
[Igj GIMQPAtWJl 0.030](~221 GYQGIFQA j0.027.
7EL.'GL iI 0.022I. 7]YFLEESH q[0.00
I181 CFYFELEJ[0.018
112l1y _±~~oo2
I 1!9]LfEPLFQGIF I 0.010
Ti]T2 R-KILJK.0079!j FFF c LPFP i[.O6 7I
r F TIbY G
F I Fgi 119A qE IL0
I 9iLL SfmHY( .006
I 8 L~KLKAFRII .004I..i PAALVAL 0.004 I
L 0.003]
5?UT -j ASL LSV 1115.1 t NSDEGF o07
00
00
Table XII-V9-LAA3Iomers-191P4Dl2B_._
Each peptidle is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide Is the start position
1..art§Sbsequence JF7coeJ1 RFICLILqlGL 0.003]
32LYFYFFLE (0.0031
FT 80 EFTRKKKL- II 999ZFi! L 1ESF -RK FL.00[Z1[YAQGLEL 10.00f 61[ FFFEMESHtPO2
123 ['LQGlFMQAA.001
[6i[ASASLVAGT 10.001
[7 I2RELLAGLLJ[0.001]
8j _KKAFRFiQc 05.001
1l F2[AfRffqCLLL j 0.00111109 [LqtqGyNSqPIL01
FT ~jE§L Aq~q10.001
L87. !KKLKK FF 0.001j
[11[ IIVN C DC EYO. 01
W2 IIHQGVNSCD I EIP00-1]
[IO7JIP LqHQqGVNI 0.001]27[I 4IL FM QP 0.001
LFEMESH YvJ=000[iI FYF FFE]~ 0.000
ff.! 11 RGFQGI FMQ [L7O(?
ITable AX1l411IO-HLA-A3-
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthIof peptidle is 10 amino acids,and the end position for eachIpeptide is the start position
plus nine.
[S-tarti Sub-sequence IKc2ReI F LTDVVIq.T8R
GSDVWTWL7 .13 5F71. iE-LGTsDVVTT L.001FT2 11F qiRcPAGEGT FO.0011
Table XIll-V1O-HL.A-A3--1 0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
ELGTSDV-'0000I
[T AGELGTSDVV 9J1.0001[77RCPGLGTS ffYOjO
,[IfjGRCAGEj0. 02
fTable XIII-VI 1-HLA-A3-l10mers-191P14ID12B
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
10JI fLVIPPL P F
[2Dl. QARLRLRVMV E0002L itFQARLRLRVM 19.0011
Table XllI-V12-H L-A-1 Omers-1 91 P4D1 28
Each peptide is a porton of 1SEQ ID NO: 25; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine. j
S _rtJ Subsequence I.r70ii:Ei CSYSTLTrvR Kio-oo-1IM SV.~MSEPEGq 10.030
V 1MSE EPS 10.030.1
5[
EEPEGCSYS]P7I990
LfLPEGCSYSThT.l.09
[T]1j E9STIIL9OOOI0001
STable XIII-V13.HLA-A3-110mers-191P4012B
Each peptide is a portion of1SEQ ID NO: 27; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for each;peptide is the start position
plus nine.
Su_§bsequence7Lscrel
77 QV-TVRYLADP JO.0051I[77_ DL EDS 1O
[2 DYI Pi[.021
v RVLA D qoF f b v: L7J[ IPQEs ~ooo
900.0 I H ~llI .9
9~ I ~c~Xi IN01
0WMA~d 9LZ
F i66 iF ozi
I L~~Iiij ]F6v- I
1 N LP16
Z o6o II ij iL li-
I6~ Ii/TVi I
v~hiiii4Li
8 F Mildl
Foqlso pel VdaH1A si op9 1
4088 Jol U11sod e eql
'S8 Ouwe6] a1iddK i joto6i66a awoupsfls uoilso
*JBI p Peg d 3
jo uoipiod e sl apdad qosflZ 10d1lU-5JGW6
I 9ifoOI 1dF1 I [8Cr
I-2Z07 .1 r TA I-e6 i
z 00JNAAA__
F6Fo
F6i 1o dHA-1ie
F oeooi~i9~i L\7[*IAS0lAi1
r6o WA
1-646i~
1069, snid-uofllsod piels 941 sl opIjded
14058 iol uoI~fsod pua 9qi pue'Sp!Oe Ou!we 6 sl epijdad jo
q)Bue I~ peij'p9gods Sf uoqjfSOdIJ'Is qL059! :O 01 03 DS
jo uolljod e SI opqded 4083
S9- 1.OVd 1.6 1.-SJGw6
R601 9Wd6JA V6U
I oo*Q IIS.L!A 8.7091.0 MilmA 4H8SnA9
I 6E]IN V6 0 I jA]'6'
WJddd6AA R]
IO f ILOMIAS091
pea jol uoilsod pua 914) pueI'SP!02 Oulwe 6 Si opildod 'o
141Buaj 941 'peijpeds 5! uo, sod
jo uofljod esSi opn~ded qoea
L O0 _VVHU.-AX elqei
1b6oo Fi6VS 6_Ir I
F 6: Fiido If V§~rir ib& lv~s I~ 0-11
FJd6Y1 RXIVSdd] LI
etju snlduoilisod liesS 814) Si ap!ldad
14059 iol uolSod pue 914 pUeISJpi0 oufWe 01 sipided jo
lb 14! aqjpaIj!0ds si uoilsod)J8)s 408!6Z :ON 01 03Sjo uoilJod e si api~ded 14059
-CV-VIH-71A-IIIX Glqsj
00
00
00
00
Table XIV-V1-HLA-AI 101.9rers-9P4D2Bj
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
Startj Subsequence 11 Score
69]RVDAGEGAQ~j 0.006
362 FCLWVVVL I .0
-131-1TFP7AGSQ .0
357-1 -AA'LLFCLLV 0.00 j1771(ULLLLLLASF i 0006
77"! FQENGTLRAKII .006iOYiI Fq FP PL -E HJI-O6
rTable XIV-V2-HL-A-A1 101-
Each peptide is a portion of1SEQ ID NO: 5; each start
position is specified, the lengthof peplide Is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.[sar I Sbsquenc 11 Score7
D-]j DAPC P LYRILffO 24[9qDAKLPCL 0 .018
[T1LYRGDG T 180.00
LFLP G] E 000D] PQoc9E[oo
Table Xl V-V7-HLA-Al lol-
Each peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.____
F{Start Susqyuencej[ Score
8,F§9I E P G R 0. 120Lo
Table XIV-W-HLA-A1IO01-L. 9mers-1 911P4DI283
Each peptide is a portion ofSEQ ID NO: 15; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
I Plus eight.
Start I .Sbsence I L e I
-TiJ TDRSQSEEE F TO.00
I- tHDP RFS-. 96
Table Xl V-V9-HLA-A1 1017I 9mers-1 91P4D1 2B___Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the length1of peptide is 9 amino acids,
and the end position for eachipeptide is the start position
____plus eight.
I SusequnceSc-ore1:3 Jj GVNSCP9E III.200
L
1 77 I,1.ACFESFTKR 0.08
7-A7 ELL-GUR] 0.07
8L769 iIGVHCAI.045
L2. .1 DTT fLf 000I i YYA9
FL 24166 _LVAGTLV 921
31 I FIYF YF YF] 19.0161
ITable XIV-V9-HLA-AlI 01-9mers-1 911P4DI 28
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
LS!a rt.Subsequence j[ScoreF86 IFKKKLKKAFRJ[02,[i71 LFFFLPFPLO2
[98~~7 [iCLGLK 0. 121
F91 KAFRFIQCL JIO.01'21
FT SLA G TLSV 19:91?
110.ii LLKVRP LQH [9CO8II[ IL. LLGILLRI 10.-08-1195_1 FIQC LLLGL E=0081
H371 -iFYY 9k9LF-1 F FLPEFPLW E0.06[14T 1I.TFNFLFFF- 0.006
FA- KI FESFTKRKKK Fq9.P9717JffLFFFLPfJL006
1I.FQ9GIM-QM- ][.079J
105 I1jSRf !9 II9PLQ G K
Ji31iFQ~l F. OI9 41
jq:1 LRITFNFF 0.004
M2 LF-x
87 LKK KAFR FO.T93,
47] VAQGLELL 0=.002
_76-1 SCDCERGYF 19921
00
00
1[ Table XIV-V9-HLA-Al 1OI-_L.9mers-191P4D12BI
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
____plus eight.
j~arti Subsequence Iscorel
Lf1 67 vAGTLSVHHJ[000FCL 727SVHHCACEJ[002j
L 63 ]SASL AGTLJp0
F7i]RFIQCLLLG 1102]___]__1LLRITFN- .002.9~
I PLFF ic..
L 33 YFYFYFFLE 0.001 1
F48]j AQaGLELLGJl[5.00188j __]KLKKAFRF FO9691
116 j NFFLF ffLP joOjII_5JLELLG-SSN.0011
I8 ]SFTKRK L 0.011I] FL LR1TFNFFL 110.0011
L~p~ i RPLHQ~v .0aoo1 128 J{ QAA q E.~0o II iii fLFT PFJO.R011
RRELAGIL[07.0012
T0jijqPHQGVNSq 10.001'L QM PWEGT 0.9211
=1i EIQGVNStCECIKp901]LF i ALLRT jol1
421_] MESHYVAQA 110.9011
7 SHVQG.0001
F1il LLEGL LKVRP iFO.ooolL F TSHHA 10.90
49 QGLE LLGs 0.000!F127 Jj LFM~qMWEjg DOO~L SS E.IsA~ I.709
Table XIV-V9-HLa-A1 10-1*9mers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight. FStar 7d S ubse qu e nce] soe
F[7h1LsN'HLKA F 60.666FT]IRKK LKKA7IOO
Table XlV-V1 0.Al101-9mers-191.P4Dl26
Each peptide Is a portion ofSEQ ID NO: 21; each startI
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
pius eight. Startj Subsequence I Score'
II9_J GTSDVVTVV 11 00 0
I 6LGELGTSDvvjIF.00312FIT ROAEGJN.001.
JF Ei GTjDVVTVj[000=5L EGSDV L9
T ELGTSDV [ooo
=71711 GRCPAGELG3[a=0O
[7111 AGLGTSD 000
Table XIV-V1-AI1O-9mers.]191 P40128
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 9 amino acids,
and te end position for eachpeptide is the start position
plus eight. I_Subsequencel[Taores
F7 ]f RV VP.PLPSIO.2
j7~ _RVMPSL0.006
JD7 71 MVIPLPSN I 0002
Table XlV.V1l.A1101-9mers-]
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified. the lengthof peptide is 9 amino acids,
,and the end position for eachpeptide is the start position
plus eight.
t _FARLRLRv m vjo. 6o6;7ILLR~VM4~ 0.000 I
Table XlVMVM2Al101-9mers-191NPD1213Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
I PI jjoC Y_ 0 01]~F I FL~~C SY S ogoo[77VMSEEPEGC T00
7~ZLPECYT .0001
[711 EEG 0.000j1
f Table XlV-V1 3-Al 101 -9mers-191P4D128 r
Each peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide is the start position
_pius eight. J[rt Subsequence Score
I..1_j[EQ T yLAI T LJ9YTVDVLAD j[ 004]
[Mi[ PYVL: 9D. I E.02!.
00
00
Table XIV-Vi4-AI 101-9mers-1!95-41Bt
Each pepide Is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachIpeptide is the start position
plus eight.Start JISubsequence (Score!I
F- SALA GTL Lo:0021
[fl~sNPPSAj 0..01AS VA IF.00
A- ~PrAS SL 1 0.0017i7] A 1 SLL 199
[T][ASLV GT~0.0001SSNP ASI 1.000!,
~7~JjPASASVAqIO00
LTable XV-VI..HLA.A1IO1 1.
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.Start~ F usqec Ico rel
401 F y-ooj~.5 0-1
364 LVVVLMSRR1l1.2001
f #L HIREGAMVLK1080§YVMSEEPEGRJ[O.BO0
I T IAQ LALLK Joo0I 4 1LRAEGHP!DSLK 10.76001
L .I5WLsRyiHRRI Fq6016
PT] 'VLDPQEDSGK Fq10.400;I ~0JL~~r~N O. 0300
~354i GVIA LLFLJI0.2701I LOj.( RLHSHHTDR P0.240
I LLLL A§FTGR IF..120
ITable XV-V1-HLA-A1 101-1j Omers-191P4D12BjEach peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
Rl-12 ILKrqsY!wT.] 10.00IR~j 48 [YEEGT JF270.0
KGTTSRSFK I0.090I
P1112811 L- RVTPG FOl.0.9P
![lj Q19 QDGYCJ0.060
[352j WVqALF 1 0.040j
F 301_VVPVWLMS R 000
lF?5P]LLyylQyIT 10.0361T q~
iL~~Asv I0.030i
F1 1-111 GrmnGRGHI .0Ef2J[ gLQnLHI (1.024.1
QVfl GQVA A R 100207
lF2-i GRVEQPPPPRH 10.0241
[Table XV-V1-HLA-A1 101-1 Omers-1 91 P4DI 28
Each peptide is a portion ofSEQ ID NO: 3; each star
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
LStartl__Subsequence jscore
1479.11 tED Q DE GEIT.0
_tL TSHR 10.0181
[F58JITELLSPGSGR 0.-018
14 [QDAKLPCFYR 11.018
LT9Jl qIqAMN-FY] 0. 012]
[Eljz. 1. QMNFJlO.0121
G1_LTLAACT _91 21
18 -kI YLHV~spA 0.012i
L284 Ij RLDGPI-P§GY]051'I 1 [RYHRIRKAQq 0I.012J25 DLFIRCPAGL]Fj!OJ
lj TCWSHPGL =0.10I
[2-'f[_nuLHYLF 0.010!
F L5EL41cLL"17P.i0.98.
FI !l..ALEEGqGLTL ff-08D257l [NLWHIGREGA =0.008
(315 jC YSNE FSSRjq06
NI88][LHvSPAYE GR I F-6-66j-
I 156f GPALE =GQGIJ(0.006358 IO. 0LF 0l96i
I. P1.l1. IYINGRGftlV j.006
I 79JI._ LHSKY9 i1295
I 493LWAKTGNGlFj[.006]FkAziI L CLLW 0.006
d II RVEPPPPRj0063 62] 0.LW V 0M0L06
12941 =VDO.006bos161FLLLL L16.6AS56.1~
00
I 00
ITable XV-V1-HLA-A1 101-10mers-191P4D12B I
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.
Kt Subs-ybequence I Scorel
1312- 1LYCHVS N!EF EWE-06FI 69 I RYAGEGAQ 9 006
L29. _LRVDGDT 0.JIO006:
1223 1 CSPLqpf-- 10. 006
[I7MGPAWLL10,05.1
GO.RTLRA KPTGN 0.0051IL!!HSFLAEA I 10004]
F426] §LKDNSSCS 10.0041
IILVPPPSLN IL..004!,
~_Table XV-V2-HLA-Aii11.l0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 5; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
~t t L sbs eq e ne I scReIE2 G1QD-AKLPCLTY E:6:81
[3 QDALPCLYR] 21.08
1i :61LLY-RG5 SGEQ P6149~DI1I.nKLYRGDs 99-11[i]LI CLYRGDSGE j0.001
DAKLPCLYRG L0.00~
AKLPCLYRGD 000
Each peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine,
SStart S1 ubsequepce-IS-core]
[711 SQSEEPEGRI 0012
;7F71 DPRSQSEEPE IaOOOJ
j:]7F7 HHTRSQSE P000
TI~able XV-V9-HLA-A11O1-I lmers-191P4D2Bj
*Each peptIde is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 10 amino acids,and the end position for each
peptide Is the start positionplus nine.
i 82 Ij TK RKK KJ 2.000]
ELE1L E LLLGLLK .209PI. .Th.IF CACFE FTK jja60]0
L lRELLAGBR[l 18
I-El SFT_ KRIKKL 100][27 JjyVFIYFYj 0.090
DI8EE 9!JLf [LLK 00
ff~F Q0.q90L7UIiJ1L LLFNF 110.054]
IF7 ES qFFT7R Fo0.040]11102 _GLLKVRPLqH 0.036]
1121RITNFFLF 10.0243111 F[YfYfYLP 1L04J
787, C CFSTKRK]Oq
Table XV-V9-HLA-Al 101.lomers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
f Stat Subsequencej JScore
F66.11,LVAGTLSVHH F10.02ii -4.1LR ILqUL.FI2:
[91JJ~FRFRILL[.-O1
29IVFFIYFYFYF 1F001211 JL~LRTFNffL ]E.12
[45 I FYVAQAGLE I .012J
F23] TFF LPF-P LVV]lE. 0128
16 I NFLFFFLPFIK 19081F33 lfYfYfFLE!J02
12QGVNSCDCE06
-1 FY.Yil0251 FPiL VVTFF g.711006]
I 79CLLLGLKV lt.096L J L~FL 19.006
F L ILRT 10.004
19 l FFINF LFPFLI 0.004]5II 7 j TSVHHAC 0.0045
F92 ]AFRFIQCLL .00
38 Fii EM. !l'I[9.031
00
00
LTable XV-Vg-HLA-AI 101-I Omers-1 91 P4D1 2B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids.
Iand the end position for eachIpeptide Is the start position
plus nine. jFstart L~usqjecescoref
13 ii YFYFYFFLEA 10.0021
(81 KKLKKAFRF [.oo21
D71 RELLAILL] 01001,[AQAGLELLSIOO1
1_26 jPLVVFFIYFY .0011
I. 7JjMQMPWE .00101j
F-7( ASLVAGTLSV 0t.i90i
F1. ~ni~ KKARF90JI.1
(11911 ERGYFqGIF 1!~I
F1, FMQMAPWEG I O~OOO
[LSSNPPAS. M00F10011 LLGLLKVRPLI1K000
581 SIFNPPA!SASLVJI0.000I(103 1LLV-RPL-QHQ (.000
!F2 121FGYF "P K670O1
r F7 KRKKLKK b7O00F17 J. FFLFFFL5PF.00
Table XV-V9-HLA-AI 101-0mers-19P4DW2B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 10 amino As,and the end position for each
peptide is the start positionplus nine.
Startl Sfubsequen~e coe 9
us f[N CtcERYF 0.000(63y SASLVAGTLS (0.0001
7-T] MRRL-LAGII.I0.000J7~T] VA GLCII.009J
7~]LAs~~GI._)[0.0001
Table XV-VIO0-HLA-A1 101
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.,_,
E[IE:TpyYTLyY' L 0:P.[~7[ELTSDVTV F01]
I7L9 LG7TL9LYVP7.p00
LVGRCPAGELGT ILO.oOO
11 Table XV-V11-HLA-A11O1-10mers±91P412B
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is '10 amino acids,and the end position for each[peptide is the start positionj_ plus nine...
art71 SubsequenceF-77 RRVVPPPL 110:901
AO: 7i1 KPLPLy i 110.0041
Ff7* LRLRVVP .I02oo3 7 ALVMVPL 11.001F]LVMVPPLPS 110.0001
ITable XV-V12-HLA-A1 101-IL__0mers-191P4D128__Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 10 amino acids,
Iand the end position for eachpeptide is the start position
.plus nine. fLs 7aq Susquence JScore
10 CSj YSEtLTTVR.0081
IDTM] GCSYSTLT 10.0001
3 MEEEGCSY ~ooo
=5i1 LEEPEGCSYST 0.9OI
ITable XV-V13-HLA-,AlIO1-1[ 0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
IF7LTIDVLA DP 7CE 0.002WLQpy.l-AfO2
F]DgWJl9-
00
00
Table XV-V1 3-HLA-A1101-I Omers-191 P4D12B
Each peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionP -plus nine.
[S~taRtJE Sbs quence I s- rel-TVDVLADPQI ,021
7T] DVLA PO GI0.000!
[7 DSQVTVDVLA!j0.000j
~J 6 VDL ADPQ S K l 0 00
r FTabe XV-V14-HLA-A11OIL_1 Omers-1 91 P40128IEach peptide is a portion of
SEQ ID NO: 29; each startposition Is specified, the lengthof peptide Is 10 amino acids,1and the end position for each
peptide is the start positionplus nine. __j
ItrjSubsequence- !LSoeE.57 NPPASASLVA.04Li. il UAVGT SV 1P011fT ]SNPPASASV o_ o7W] A SLVAGTL 119.0001LFi7IiI.SASLVAGTL 0.000I
L771LGSSNPPASA 1.00L7.ss~~Jj~pp I
S7]GSNPPASAS .77W] PPASASA 10.000]
FT7 PAALAGT .R990]
le~ XVI-VI.HLA-p,4..gmers-
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide is the start position
-plus eight.I
Star.t Subsequence I Score
1501 IYINGRGHL30.0
111241. EYECR VS fP0990
~Table XVI-V1-HLA-A24-9mers-'I 191P4D12B jEach peptide is a portion of1SEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
rt ,,tSubsequence Score,
7I 485 Q KEELTT Li .0
Iio5RNLDGSL 12.07001
15 8 JI_tKYGLHYSPA _I 00~[i121 _RLRVLVPPLjI .E6 9J10 _q P I F.6470I
i 53621 CLVVVV'/L 8 '.00
I~5i~Y~Y~ 1L.42001141 AWLLL [T7200]
:F5'2 WLGQDAKL 6.600382j MITQKY E E L L6. '600
_R7J AGE GAqEl .I[633611200lR AAISEFIL.16L1
:12221TCWHGL.o
I'53 F 6.0-00'l j IETQITELLII6.00.I i11ALHSKYjLII 60001I2 I VTSEFHIiOOO00
[1111 GpEAWLLLL 1L6.o.1251LAEASVLL60 LO
ff7 AALLFC LL i l_5.76I
12811LNTLGk 4.800.-l
1111 EAWLLLLL. .800-o135iVIALFCL 49-FYI A-4.800
I261 TGRCPAGEL f7 4.400EMWGPEAWLI4.000 I
'12941
L Table XVI-V1 -HLA-A24-9mers-191 P40128
Each peptide is a portion ofSEQ 10 NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,and Ile end position for eachpeptide is the start position
pj lus eight.
Star Subsequence Scre
11 35!'[.SFQRLRLI400[211 ARlLDRD LL4.000
1? 9! HGREAML.! I4._0017411 EGA QELL 114.000
S 4~l1L~A 000
'1 7jL9M H F 0~IA LL2 .00
L5 45) D KPCF I2.000b 2] YSTF ALS 1 014951 KP TGNGYIL?:T090jL QlI LTLRN~
IPIL TVRE 11.650-1l~iILVVVVLMI1.001
WLLGEi O 01
11571 EGGL ~0.8641
Y12I AYGV~t EI F.750J
111 IFPAGSFqAJ 07501[I7LEFH LVIDI
361LFCLLVVVV 110.600]
3931 T RE NSR 0.6001
00
00
Table XVI-V1 .HLA-A24-9mers-I191 P4D1 2B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
Star Subsequence Score
2371[ HILHSFL] i0:6001
53 LFYRGDS GEQ P I-50L301EFSRSQV 1 050
F195][SFKH§RSAA If 0.:500
L2.!~I SRMNGq Lj[ O. Oj[297 I[.qDTG FP P l 48250]1YRGLEDQIN1L 0.480
[384 1-KYEEELTL 7 0.480'
F?2i 1. R GLEqDQNvLW [o0.-457?341 [KQVDLVS AS .42
L3?8 LKA QqMTCqK 1ii .39 6-E I L9CPAGELETIA3 q_014[Y-LPLPLIEtO.300
E3].RfITHLHVS !Fi 0.280I58 SGEqqVGqyA! I. .252_j
F16 [LP LPLN 02.216.]110~ 1 "'--LNAJ0~~
IFI-01 FOPLC j 216-
I3T1LqpPPSYNVT I I[VTWALqQPAJF 6-Ti
LableXVINM}LAA 24 9mers-
Each peptide Is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachipeptide is the start position
'I plus eight.[starjasubsequenceI IcreF][iGQDAKLP-CL IF00
Table XVl-V2-HLA-A24-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide is the start position
.pus eight.
lFatI Subseq uence I.P9.F yRI)SqQ ~0.550;FT LPCLYRGDS r0.100I
77 QDAKLPCLY 02
D711 K L m
lTable XVI-W7-HLA-A24-9mers-191 P4D12B_
Each peptide is a portion ofSEQ ID NO: 15; each start
iposition Is specified, the lengthIof peptide is 9 amino acids,and the end position for eachIpeptide is the start position
_plus eight FStartj .Subsequence J co q
D ][TD §R II 0.00217_TtDPSQ002
LI] TDRSSE j0-
[Table XVI-V9-HLA-A24-9nmers-IK 191P4D12B.. J-
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight..,-ar; ubsequence IiScore I
32 IYFYFYFFLU203
i, TFYFYFFLEM j 3a0001
Table XVI-V9-HLA-A24-9mers-19P4Di2B-
Each peptide is a portion ofSEQ I D NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
.pus eight.
[Start Isubsequence 11 coe
I LF FLPP 24.000I
Fi FLFFFLPF
[T7 J F FlY 8I1.002i
'I'd FNFFLFFI1 5.000
[*5J P AFRFClqq1! 9.609]
F5 I SNPPASASL 1 7.200j
IL 6,1 FYFFLEM[I6.00
(1q~i[GL~L 6.000]LS![ FNFLPFF 57601
63 7 SAF SLVAGTL II 5.600 I
9:61F IQLLGL 480
Fk] R2 RIFNFLF IA:0
F 711 F S t qjI 3.000OI LRITFNffJ 2.880
23- 3 LPFPLW-FF280
I. il LKKFF 1=.400
176~~i SODOE YFI 2.000
Ii23iLYFQ(LFMQ? ij-t260 I
WT FFELEM--L0-0
Pl. 1 L F VVJI 0.90II75I1HYVAFlE _1_0.750_
00
00
~Table XVI-V9-HLA-A24-9mers-IL -191P4D12B
Each peptide is a portion of 1SEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight._
Fi11LRITFNFFL (0.600]FFFLPFPLV]OVFFIFYF 1(f0.600
IFz. II w KKK( F O.60
1122 G QGFQ1051
4 P LWFFIYFQ q 0.360
F11 RFPQQGF 10TF7 FPLVFFI II 0.252
Ij 7 iLHAE F ILPSfl ot7
,L769LGTILSYHHCA 0.210O I
[T201 ERGYFQG(IFF .o
Y. FIQLLLG 0.10
LF..ILFLE:MESHYV 1[.10i
L6.iU AsLVAGTL F(01561
I CERGqi YFI 1[ 0.144K
F I i FQGIM2 0120i 9
M09 FTLQHQGVNSC L9 1!_0.1
111'5 1NSCDCERGY '_0.12
I 56 SSNPAS F .100P- gSSNPS Fq[67ThoI
Fj?1LMQAAPWEGT [I 9:Iq7
EfYJT[[ HGVN SC DC -0 0
[Table XVI-V9-HLA-A24-9mers-
Each pepffde Is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for each
Lpeptide is the start positionplus eight.. -1
[i26 f[~FMMPWF .1700
[7ATLSVHHC j[05.iqpLLGSSNP l[.100t
9I 1 FMQAWE [I06:6'IFT[F8 ST jL~ g.
[~Y1 FFEMEH [0.507,[Tqfl]!KVRPL-qHQG ]L .7i
K "L [0F.0722
I 106 _QHqGy [L 018FL4o]J~tMESHYVA jj0=.18
I LLSSNPPLO081 43JI SH AQAq jf.01-7
ffTljfGVNSCCR_ .07
Table XVI-VI 0-H LA-A24-S 9mers-1 91P4D1 2BEach peptide is a portion ofSEQ ID NO: 21; each start
position Is specified, the lengthIof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
IStart[ Subsequence 'IScorel
l77[Grso w.W 0.1681AGELGS~y 0.1501
!FT-F7] oLTDV :1.10
FTable XV1-V1O(-HLA-A24- 19mrs11PD2B J
Each peptide is a portion ofSEQ ID NO: 21; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for each
Ppeptide is the start positionplus eight.
LS!9rt]I Subsequence ji®cre
F iL EG YI JK.ooI
PA-GELG IjL0100
F 7_ ZL~I~ pI Iqk:: GL OL03
Table XVI-V 1-H LA-A24-9mers-1 91 P4D12B
Each peptide is a portion ofSEQ ID NO: 23; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
____plus eight.
St art( Subsequence I r
Y MVP1L 8[.000V_]MVfPPSL 17.2001
F ][RLRLRRVM .OI
E23 ][.LRLRVMP Fi
r_1[LRVMVPPLP ~0502]E7 LRRMVPP I[.02j
Table XVI-VI 2-HLA-A24- 19mers-1 91P401 2B
Each peptide is a portion ofSEQ 10 NO: 25; each start
position Is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
p lu s e i g h t t.=tartI Subsequenc Scre
F7IP=EGCSYST [..o501
111111~ VMEPG7§7LCSYSTL t~O.12O[77 0.1
00
00
Table XVI-V1 2-HLA-A24-9mers-191 P4DI2B
Each peptide is a portion ofSEQ ID NO: 25; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
1. Start Jlbsquen.~c relEL L2~TLT II0.1001K-7 SPEG SY S 0 J.018
[77IEEPGSY P.018
Table XVI-V1 3-HLA-A24-9mers-191P4D12B i
Each peptide Is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthofpep ie is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
IStr jI Sursquce I §;oReF iL D i0...20;
Zli LADPQEDS IO,0i12i
71111 PQy~j[p 01
9mers-19 1 .01 2 1
Each peptide is a portion of1SEQ 10 NO: 29; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
L- plus eight W[Subse quence [Scjr&
F 3J[NPPSS [.0
7Ti FK PASAS7LV [q[0.!5]0F 7711 FTPAS-LVkG-T] Fq.120
FT] GSPPS 0.1001FPASASLVA I0.010
PASASLVAG0.001~
FTable XVll-V1-HLA-A24-10mers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plsnine.
1Ir:I Subsequencej corej
1[33]RYHRRKAQJ 60.000 1
[TL42jRSQPEESV9Lj--.i0
KI'GVLSP J000
ifl705jR iPLDG
F[6][EQPPPP P L FK4 0j
I31FjC-FPU'LLVL I 7.200k
!I1q8.jAL GQGYLL 17.'200
Iji j~GPwu~~IK7.00GVIAALLFGCL .9200.
k~IEEGRYST I=.000]
[-2F =ITWsHPGLLI
2311 LQQRITILJ5.
!F3] FYRGDSGEQ 1 so]
I ~I[F~SRGL1 .0011249EAWYLLLLL1[4.800123 41F LERENSIRRL1L4.800
1YNWTRLDGP J4I LO 4.800
12351 RITHILVSF 4.800
Table XVII-V1-HLA-A24-
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
Start Su. bsequence 1 Scorej
9MWGPEAWLL 14.8001'12961 DTLG FPPE1II4.800_ILi56I GPALEEGQGLU[4.800
TqKEEEL 14.40011132 ?I TPAG SFQARLIDL4O1
261. .ITHILHVS7F.I401[2211 y§ LTVV -GLI 14.000
128 [IIRVSTFPAGSFI1 4.000
L134 [GSFQTR~ 4.000
[501MYNRGH 4. 000F EM GP AL 4118L..L .000
3~3Fl!;[qEEELTh L9. 0[E5 1g PGPA1L FA9.-11611 F LLL LLAIF L60 I~
47 61EIQMH .0
[IE2 I WGVMLLF J 2.000[E2 .9h!DQNLWHI I 1.800jF?239J[QRTtH 1.800
I4JI.LEQTELLJ1 'A
F3LG- Q 1.26.2I3 9P ILTTLTRENS!J1 2=01
I?!71IHGLLQDR 1. 200
1124 ]YERV STFP 1105
473l- =QDGIQA LQ8IWj01[ Q ??!THs 10.900113 6 RL R Vl F- o 76
00
00
[Table XVII-V1 -HLA-A24-l0rners-191PD2
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.
Ltrt Subsquence Sore
P24 FIR -S Q-VTV Dv Q FT .80027 SYNWTRLDG
(11 RRVLPPYI1O .720!
I[6 0] FO LL YV-VVV'J.7001F( 51-j FVRIE-TqTE jI
62j GREGAIVLKC 0.0
SWHIGREGAM 00
_201 EFSDQ I0.600
§.27 PPSY vTrR 0.600
F !AEMWGPEAWI'1 L 0.600VOAGEGAQEI
I 34KQDLVSAV! 0.504JSfLWHIGREGA I
L7 LRAGS [LJ0480
P2]SRSMNGQOP 0.480
[3 QEDSGKQVD1L43 NH EL 1.0 '4001
L29 YRVDGTLFIO.360
LI 9j[ sL YS vsF [0.3081
[;97]RVEQPPPR 0.300
[11RSMNGQPLT~ 0.3001
I~ D 28 1R ELT(.300-1
(41 PESGLRA [L0..
(43j RA PGGy 0.240
11123]K GEYECR V7STF *0.240 1
Table XVII-VI -HLA-A24-i0mers-191PD12B j
Each peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
__pus ne.
I LVPPSLN F-.2-6j
[274 T 0.P N O216
[Table XVII-V2-HLA-A24-1 Omers-1 911P4D1 28
IEach peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.-[tatSubsequene] cr
[T1 LGQDAKLPCL] 7.200
[i~I KPCLRGDS 0.3001[f DKLPCLYJ 0.120
FLYRGDSGtq1 0.011
[7]LPLYRGDSGI .1
[T-]FPCLRGDSE([ 0.002
IF QDAKL-PCLY F0507,
Table XVII-V7-HLA-A24-1
IEach peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start position
plus nine._
;F~7_QEEPEGR A120
R-8 SE1 PEGR IFo.03077T T R9~E!41
F Table XVII-W7-HLA-A24-II l0mers-1191P412B jEach peptide Is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
l.1i~siHD~i~Q1[O0 II 1 HHTDPRSQsJ0.0101( T T DPR S Q S j 0r o1_ 3 [HHTDTPRSQSE IToqoolI17IL! -Q EPEG l[0.ooppjFTabeXVV 9 -HLA-A2 4 j
1 Omers-1 91 P40128Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 10 amino acids,and the end position for each
peptide Is the start positionplsnine.
(Start I Subsequence- Pjcj(
IL 451 HYVAQAGLEL 330.0
1 F Q LL 1720 -'jID T7LNF!FFFL j320
I .Fl~T~YL118.000
16]NFFFLFI1.2.o
FLqR!FQLLI 11.200
LT.-YIyfY-FYF 1110o.0001[j].-GYFQGIFMQ 8.400j
5 IUL- ],F.200
M12]RITFNFFLFFIK[T80011811 FLFFFLPFPLJ(M.01
ESFTKRKKKL 9WGL RN L4.400I
119 1 ILLRITFNFF ]4.000
00
00
Table XVII-V9-HLA-A24-1 Omers-1 91 P4DI 2B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide Is the start positionI- plus nine.
[startlE Su bsequ e nce J LScre IL4-61.nA~qA LL ]J[,4.9*99Uoj L_LLKVPL I .0001
I E-V IL T!Yy IF 3.600
I.2FLPP LW FF][ =.600
[3 fj YFYffyFLkEM
Gfl 2.400
1118 fDCRGqFqGI F2.160!
W[ LL~ILLI ~2.10 01[i3i jf rNfFLFFF1200
3 i_LP~fLWFTFI l~.680 1
I KAFRFI .601jLF1iI2 YFQG Fq 09001
Las. YFYFFLEMES][ 0.660j
FLi][MLLAGILI 0.76-.o
r [Y[LFFLMESHY [.76
[36 f FFFLMESHILO=.5001
86 jj KKLKFRF 1 P.[711 ][LRITFNFFfj~.36O1
[~~Z~iIF KKKA I I ff60 I
j1105 IKVRPLQHQGVIIO28L77lI vHHCACE~sff I02406
1 -19J CERGFQG-Lf F[ 20SNPS-V[A0
[j-TT][QCLLLGLLKV ifoIl5.j53j1 ELLGSS',NP-PA1FO.1j50
7Table XVII-V9-HLA-A24-I1 Omers-1 91 P401 2B__
Each peptide is a portion ofSEQ ID NO: 19; Eac tr
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
F647LSLV GTLSYI0.-15O IFLLFE:-EtYA 1.0..150]I 2TLFQApW. G. 114591ri:2 LPV]
L1. 6 y R~9 1FO150
681 J]ALEHaA 0-14I~qA 24O- I.f)Y94 7iC
.YflYY1I0.120_1
WI] LLGLRT -0.120:'
55 1LGSSNPPASAj 510gp 0[114 IIVNSCDCERGYI 0.-100 I
[9 ii GNP=PASj 0.100]
[E3A.YGTS~ 0.100]LJIL GTLSVHHC F0- o1-0 0
F127 IRIMQMw?)G]LO.0831
.i~i LE0Yqql_.050 1
1oi][ILLKVRPL4o992t]][RGYFQGIFMQ 1L2.q20 I
ii9jCLLLGLLKVR FO 018F7 I VAQAGLELLG .0-O187I. 12 IqqYSCDCERLQ2
51 .L~ELI-GSSN.?j[ 0.015 I
26IPLVVFFIYFY 10.015'
F able XVI I-V9-HLA-A24-L....I9mrs-191 P4D1 28
Each peptide is a portion ofSEQ ID NO: 19; each startposition is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
Dad[subsequencej1 Score I
F211 II KVIRLgHJ[0.1[l JkV L~v~ AcF E I 1 15 j
Table XVII-V1O-HLA-A24-110mers-191ND P4B -j
Each peptide is a portion ofSEQ ID NO: 21; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine..
FSt][f Subeq uen ce cr
[10] GTSK3V11-00
[7IFG LGTSDWV 0.1591
L=91[K9TS D V VTV V0.1091q[LALF LGTSDVVT fl
7 2 PAGELGTSDJ 0.01
F7]lE PAELGTqpVj =0.012LIT]19..CPAGELGT 0.01217 Ifp- T CRCPA GELG 0.0 101
Table XVII-V1 1-HLA-A24-lomers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
1 Startj Suseunc__ o
8 VMVPPLPSL
F7-7LT-LRMVPPLJ 777.FW IFQALLRVMII-o..0
00
00
Table XVIl-V1 1-HLA-A24"l0mers-191P4D12B__
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof pepide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
L__iiSubsequence. te[7i7 LVM VPP LN .0.2161
7Y] QRLRLRMVII.1 20
[FT7 RLRVPPLLP]0.0181
FF77 ILRVM VPPLPS] P0.9517__7 ,ARLRL RVMVPI{0:0.021
Table XVII-V12-HLA-A24-l0mers-191P4D1.2B.
Each peptide Is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine..
ILta.1 l.Subsequence core
1111 sYTLTfvR~j[0.50O
111]EEPECSYSTT 1
SEEEGSY L.o181
=0 oLqSTLTTVR !R.121[7F L EGCSYSTLTjI. I
L Table XVII-VI 3-HLA-A24-110mers-1 91MP41283
Each peptide is a portion ofSEQ ID NO: 27; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus rne
[I strtj[ Su bseuenc e
I Table XVII-V1 3-HLA-A24-
Each peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the lengthof peptide is 10 amino adds,and the end position for eachpeptide Is the start position
pius nine.
7T
W9LMLVP7P 0015
7~7[TDVLPD0QE 1 q t1
L Table XVI I-V1I4-HLA-A24-lomers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 29; each start
Iposition Is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
[-strtJLSubequence lScore
EN SSNP ASAS L 0. IT
~FZ3- PASN ASAST F0_1
I7CfLTA_As G y CIL
I Table XVII I-V -HLA-B7-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
_plus eight.
Subsequencoe Ij
292 GVRVDGDTL]20.0
HQPPPPRNPL 00
IL -PDSL IFO.p226 LT9q.PAGE i 60.000
LISIL RRV=LVPPL Pl 9.929.
[L17 [GPEWLLLL 124.0001
LD.lI VVGVIMLL 12.0001
LV\KILL 12.0001
TfL7 2 9AQL 112.000,F7i1]1 DALLHSKYGL [11.L001
1E6LMLLqA -112.000J
13 LGSFY RLlI.0
11] _EMWGPEAWL IL6 992iIi45jLP PLPsL]I 600045_0]LTvREIETq:TJ] .000i222 1 TCWVSPGL 5-67660
[25]1 D SoVrVD vL .001287]GPLPSVRVJ4.000
I F~ICLVL I4.000E[1 IEWL .0iL260]1I.HIGREGAML II kLP0i41 0] L:ESVGLLPc00 I
741 EFQ4AL.±0 0 07FJI T~qKYEE L4.000
203 F3_00_051i[F2.7]5 F2.SNW J000]1322 1_SRDSqVTVII 2.000
AALCL I1.800 I
00
00
Table XVIII-V1-HLA-B7-9mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
[Strt ubsequence 1 Score,[3ft MSRYHRRKA 11 ':oo
1331[ PAGSFQARL F 1.200]493 ,.AKPTGNGI 1[1.200
L1I AWILLLLL .036 ]LPVVTL IIoi4-3L EIETQTELL I 1.200L'iI PALEEGQL 1 .200F 7 j A\SVVWGVI 121.001F?249II SVRGLEDQN 1.1.999.!T74lIHRRKAQQM F .OO200j
ii EGRSYSTLT IFT0001
345 LVSASVVVV 111.0001S 1.000
j[YQVAWARVDA if 6oIi1[_PPRNPLDGS 1 0.6001I8ALLFCLL-W ;0.6001.17. APSVTWDTE [0F.6C0
501 IYINGRGHL 10.600151 PSLNPGPAL IL.6001
]CFYRGDSJ1E5
I439i EPEGRSYST 10.6001LsA~sVVVVGV I[ 609J
W9 SWVGVIA J~ 050O
L GV LFC 40.500 IASFTGRCPA j[ L450
i L CPAGELET.S i0.400j7i1 STLTTVREI 11 P0.0
GDTLGFPPL 110.400,
jl.3 QaoRIHIL jf0.400263 REGAMLKCL /10.400 1[28j WRLDGPL I0.400 1
39J LTLTRENSI .1L9A00;t~J HFVENGTL 0.400~
REIETOTIEL j 0.400[T3 j( QKYEEELTL 1 0.400!
1Table XVIII-VI -HLA-B7-9mers-191P4D12 B
Each peptide is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide Is the start position
puseiht.
Pt7q 1§y sejuqnce )I Score]302 IFPPLTTEHS i0..0023j THILHVSFL IL0400250 I VRGLEDQNL .400
GEGAELA .001a ~WGPEWLL- II OA9O
3371 EDSGKQVDL 0.4001Iflj.ILPSRVGj[ 0.300LT:iI GSVLLRNAV o1ij AVQADEGEY 0.300
MNGPLTCV 0~~F
B137II~FQAR~LRLRVI.3001
F7 ]WARVDAGEGIIO.300342 [QVDLVSASV 10.300
4q2 IISPGSGRAEE F300IiY1[ IRSMNGQPLTI 0.3001
211 VPSRSMNGQ [0.200
17][ NGQPLTCW FO.2opiFO. VIW 11020-0T.1]1 ETSDVVTW 1.v00
iil PPLNPGPALEEG LO.3PQTable XVIII-V2-HLA-B7-9me
191P4D12BEach peptide is a portion ofSEQ ID NO: 5; each start
position Is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
LtartI ubsequence liScorel?1 GQDAKLPCL [11ooi0
IFDL yLPLYi j0.600j
AKLPCLYR /I:9iS
[F]Jf CLYRGDSGE ]70117jiL LRGDSGEQ 0.010i L.D KLPCLYRGD 9j
WF7411 KLPPCIYRG 1.0031
Table XVI I-V2-HLAB79mers-191 P4D1 2B
Each peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
[start Subsequence score=2L QDAKLPCLY IL.021
[abe XVIII-V7HLA-B7-9mers-191 P4D1 2B
Each peptide is a portion ofSEQ ID NO: 15; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
Startl ISubsequence Scre
[7111 PRSQSEEP j.000
I71SSEEPEGR /101O
II LHHjDPRSQS J0005K HTDRSQE e.0031
FLIL SHHTDPRSQJ 0.001F PRSQSEEPE g0.000
Table XVlIkIV9iLA-B7-9mersI19D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
[tailSubsequncetll re
I6 ILA~LLi .0.000I2 1i FRFI9Q4L 112.000
L4iI VAQAGLELJI 12.000
I. 2J NPPASASLVI1 4.000[qJ FICLLLGL 4.000[iL IQCLLLGL!][4.00015s FNFFLFFFL] 4.q
00
00
[TablIe XV I I I-9-LA-B77-9mers-K. 191P4D12B jEach peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpepide is the start position
plus eight.
KSar Su-§bsequence score
'i01 L-GLLKVRPL4.0F5'81 SNPPASASL F400]11IfRGYF-QGIM1.00
FK-VRPLQ HqG I[O. 500:
F 9Z!IF qPLQHqGVN [0.400
L[i 77LFTPFF Fj 00j
KLKKAFI I0.400 jL 1 SHVOAGL FT_00
TT171sF TKRKKL ff4o0 1L-.J.FVFF Y 0P.40071
FT IL IYTF7YFFFL Lo.4j0]RELGL 7( .40
Wi ICRGYF QGI ii .400F71 FFE CL 040
I111LF NFLEo40
[M71 LAGILRI 0.3001
f1 SLTSVL .301
FT1I LRELAL 0.120
E8[2L LQNS L 0S.100]659 [G TL_ [E2.OA0O
EOI lV H4j 1.9lMQqo.
FI =F HCC E 10071
Table XVIII-V9-HLA-B7-9m~ers-I___P4W2B
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.
ItE~rjI Subseqence score
[7 t-.AG ILLR I TF I 009 0F flQPAGLELL W, 66]
E F1 SLVAGTL 0.06
TPFEjALELLGSS FO0060
WLLYT ATLVH IA( 50F7fl I-11AF JR C I
L L THR [9030[2]FYLPFPLWF 1 0.030]
[7T]IIEY!I CF J S F030 I55 LSNPPASJ0.2
21 LffLPF PL V!0.2
E2 iL RITFNFfFLIO01I7WiL 1T F=NF i020Li SCDCERGY J
fl ITFNF] a020F 13i M j q_9F ITYF-F-YFF-7L0
[iP GLLRPLQ 1. 0.015.]
Ai1 GFQP IF-l .1L281FMQMPWEG 0.1
I[ __LFFF F 0.01
F!iq.oi LLLVRP 0.1
Iip!.I LLKVRPLQHj 0.0
TbeXIIi-V9-HLA-B7-9mers-1191P4D12B
Each peptide Is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 9 amino acids,
and the end position for eachpeptide Is the start position
plus eight.Stat Subsqec I
83JLTKRKKKLKK 010 190O LKKAFRFIQC 0L01 i
[L2]Ki MESH LAQAL 0.01 1L±]LS nAGILLR- 10.010
K-L o-io 1 n
[*IIL1I LGPP 11 0.010]
E1J±LnS-cDCERG .oLFIl]. SODGERGYF 1 =0.009]
F?17]IP I-FMAPWE][0.004]
LTable XVII-11-A-7.__9mers-191P4D12B__
Each peptide Is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachpeptide is the start position
plus eight.
[1 rJt [ubsequence SIeF RLRVMVPL 0.000
M]?AIRLRIRYI3000W-80EPPLP.?L 6.000
ELK =VVPP .450
DII RLLRRVVPYD T !L W ARLRLRVMV', FT90 1
LD] LRYVVPLPJ i0001_
00
00
Table XVIiI-VI 2-HLA-B7-9rners-191P02
Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide is the start position
plus eight.
S Su bs e-qu en ce ISEPEGCSY~Ti 0. 600
9Li CSYSTLTTV IL0.200[Fl-7-T TJ 0,100
17L_ _UE 0.1001
tE99Y§11 0.040
Table XVI 114V13-HILA-B37-I9mers-191P4D12B JEach peptide is a portion ofSEQ ID NO: 27; each start
position is specified, the length 1of peptide is 9 amino acids,and the end position for eachpeptide is the start position
plus eight
fstart] S u bsequence] -score.)[qVTVDVLA II 0100
7~7IVLA PQED I .5
EyI qV TLDVLA7CI 0050]
17710 LVAPESL030_I
111yVT V 0.010EWDL Fq igL-G q
TalXII I ypyk HLA-B7I I[Ta _9mers-191P4D128 _1
Each peptide is a portion of7SQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,
and the end position for eachIpeptide is the start position
plus eight.
I ar~j ubsequ nce]Screj
Fk J L VL 7. F 2000I
FT able XVIII-14-HLA-B37-9mers-1 91P401 2B
Each pep tide is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 9 amino acids,and the end position for eachpeptide is the start position
plus eight.
SatSubsequence IIScore
rT][NPPASASL II4.000j]ASASLVAGT]I030
§2NAS FF/A 0:
1 I*ALVGTLS 6~0.6
ASASLVAG E.03_j
ITable XIX-VI-HLA-B7-1 Omers-I
Each peptide is a portion of1SEQ ID NO: each start
position Is specified, the lengthof peptide Is '10 amino acids,and the end position for each
peptide Is the start positionplus nine.
K1t![ usauencj Sc ore
1249] SVRGEDQI 0o
I DPRSQPE2SV060.00
IEPERST 24.O00035itVVVV GFMA.i 20.0003501 WVGV I 0WJ
FL[q1. GVIANjLFCL =4666600
1 .'I1 EAW YLLLLL L I1@:.9
I
IF79]LA~LLHSKYG9L]I. o000
Table _XIX-VI -HLA-B7-1 Omers-I191P4D12B
EIach 'peptid is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
F 99] EQPPPPRNPL_ L-00F1 3781- QARLRLRVLV 1 9.000
19 LY~NniL8.000PT?7]HPLQQ 1 i[00i
1_I~qG 1YL][.00025 FTRPn I 09
LTfIAMWGPEAWL 5. 4001
14021 ]RSQPEESVGL 'F4 4000]
F IL1. EP9Y 14.000
F 8 1 WGPEAWL LJL.095II 83lQiELTLi 4.000]
L7JL9~~Y~lI4.70001 E ITILV FL ±69i
91iSRVGT 4.0001
10 WGPEAWLLLL I 4.0001 2jqLIWsHPGL(L 4.000~SPSRSMNGQPLI.00
I280. Y T RLDP l40001M21 I LTCWVSHPGL 1 4.0001
IMALLFCLL l~IFQTQKYEE! _LJ 4.000
[T6]5 IT D 4TV
[i~fl ALEGQGLL60 COI~ F 1? AEAE _L360_0
[E7 )L\A9IIq 30001176I~PAPvTDT I2.oool
LQQHILv 1.200
SAVVGj[.200
11291]F IREGA MLKC F1.70001
00
00
Table _XIX-V1-H1L'-B7-1 Omers-]19PD1 2B
IEach peptide Is a portion ofSEQ ID NO: 3; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for each
peptide Is the start positionplus nine.
Stat Suseue c o jSoe]397] SIRHHT [i00oo
61_I[QVGQVAWYI1.00441EGRSYSTLTT 100
189 jHVSPAYEGRV lL.. 2JL~2j[TOLLVVVWLM_11SY1.000]
:133 PLTTEHSG 9~.1P] 1~d QPY9Et:GLRF LO60 0
I IMLLCLLV ]0.600]358___ ALLFCLLVVV. 0.600
I4 75FVQNTRA 0~.500TVREIETQTE 10.500!
292 GVRDGDTG [0.500.
FT2[LASFTGRCPA I 9A 5 9REIETQTELL]L70400]
3241 RDSQVTVDVL 0o.40L7o: VOYAqGGAEL IL[O0IjJI APLSLG!_EMW 0.4 0 0
r? ILT GEGM T i 0.400.
F. LGEGAQELALL 0.400[Tj~jKPTGNGN 0.400J
F i1 LRAEGHPIDSL I0407 MWGPEAWLLL 10400
483 NH FVQQENGTL 1 0.40l l* rLLQDQRIWTH I
LRLRVLVPPL I .401
]4~jYSTLTTVREI .0.4001JF342, QVDLVSASVV LO.300
2SMNGQPLTCVj]q0.307P,T, D1 DGEGAQELA!Io0302141 RSMNGQPLTCl 0.300
IASVWVVGVIA 030 01I lDGSVLLRNAV ,1 0.300
Table XIX-VI-HLA-87-l0mers-191 P4DI 28
Each peptide is a portion ofSEQ ID NO: 3; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
[Sart] 1. uj un e][Score
L1679 [ASqAEGSP ]Fo0.300][~fl[~PAEGRVEQ L:300
UL ff AE SPA P [0 2 0
FSRSQT LO.200i
Table XIX-2-H11A-B37-1 Omers-191 P4D128
Eh peptide is a portion ofSEQ ID NO: 5; each start
position is specified, the lengthof peptide is 10 amino acds,and the end position for eachpeptide is the start position
.plus nine.
[[cixi~q~qG][.200j
ET IL PLYRG L2 0.030D 10.039]
AKLLCLYRG I=.003]I[T]QDALPLR [2a002J
PAC LRSG 0.001
ITable -V47-H11A-B37-10mers!191 P4D1 28 I
Each peptide is a portion of]SEQ ID NO: 15; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plusrfnin.'[start[SubsE FnjScorej
171[PRSQSE EEI200
~Tble XIX-W7-HLA-B7-10mers.191P4128J
Each peptide is a portion ofSEQ 1D NO: 15; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plusnie
Fs-tartl fi ubsequence I[re]I
FA- SQSEPEGRS 0.030][fRQSEEPEGR fW1o
HSHTDRSQS.005]
5 TDI!PRSQSEPI 0.001
[[]PSSEEPEG. L7 P~9
Tble XIX-V9-HLA-B7-10 Orers-]191P4D128
Each peptide Is a portion of1SEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.
IEtrtL sq uen ceJ =co]
46 IWA QAGlELQ 20.000I ii. AFRF i..9DLF MlkJ i.000
F6 jAS±SLAGTL j[ .O OO[105ERIKPLQHQGY 1000
L1 qPJWL~LLK~fI 4.000]
80K ESFTKRKKKL [00j
lAF5'_S[fQGLL 4.000
I. 9 ,NPPASASLVA [L0
L64T I[AkA~SJ 0. ITFFJ[ LAGVNSI 0. 400]
114~ L iiFF LFFF I] .400
00
00
Table XIX-V9-HLA-B7-1 Omers--19IP4D12B_ _J
Each peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, the lengthof peptide Is 10 amino acids,and the end position for eachpeptide Is the start position
plus nine.[SrtjI Ln? Suseue c L~oreI
[_FPWFFIYFJIF0401_RHQCLLLGL ][000
1.TU[ [YVAqAGLEq LO40I[ KKFFIqQCl 0.4001I
I[~2VAGTSVHHIFO 300
IFI-.994 6LLLGLKV-J[ 0.200]8 1l SNPPASASLV F020
11281fMQAPWEGTIF .1501FL iLGSSNPPASA1 0.150j
'p 118]LqCERGYFQGI11F-.i20JI
IWFFIYYFYIL.100j IELLGSSPPA 1.100
11_12 ]V CACFES j 0100I -i1]T!R KKA Iol
2 jjLyLfF!YFI0.1:9PLU290jI EGYFQGFMJ 0 100
L11._AGILLRIT1F ]i 0.0901
[ilL AGB..LITFN 0.060]AGE-LLGSN 0.060
[T j1L%ELL§§[ FO.6-
AQAGLLLGJ0.040
56 GSNPSCDEGY 0P030
Li 77IACFESFTKRK 110.030
Table XIX-V-HLA-B7-lomersj191P4D12B Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
peptide is the start positionplus nine.
Sube unceScore
T9 ]I FLEM ESHY VA I 0.030 I]
F- I -LP0.LF 020
[iij 9ERGYfqqIW L2O I
F.jT5ILQqlIFM9AEW 0.0201rK7]Es-A4HI A0-Ln
GUIITFNF.] .1 2[Ifl21LTFNFLFF T .02.01
[11]LYTNCFLFFFJ( 0.020]LIFFLP FPL .07201
F~~~11_1 KLKFI 0.1jiOB VSOIL.0 0]
IW IQLLLLKVI 0.0157
L8U I LKK jlql90'5jF11[LLVPLQHQVS I 0.010
~iF-8-9 -1 l0.010
L065 L VATSH 0.010
L.i LLLLLVi0.010
FIo-91 I LQHQqVN.ScDI *o5oqi1-0Q1 GVN ScDC!L0.010oJ
IFLF .1L H YCE1If 0.010!
F. D26[9!!1QA V EI aoio I
[T E LFGF0~ 0010112 IFq!EMQ P~ 0.10
T~able XIX-V9-HLA-B7-1 Omers-191 F4D12B- j
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.
fft7ad I Subsequ-ec Scr~e
.7 jfCCFEST 010 IF 112JLQGVNSCDCE FOO-070
L _hI FLPFPLV 0,003]F12LRWIIq~ IFM MPW 0I-03 I40O I MEH.YYAQ ED 3
F i7 iCLSDERYF1FIaOo3
IFTable XIX-V1 0-HLA-7-]I1 0mers-191P4D128
Each peptide is a portion ofSEQ ID NO: 21; each start
Iposition is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plus nine.[Start &!se quencel Scre
FLLT -SD 0.2001
E7]KTPAGLELG .100IGEL9TSPYIA 1
M RCLAGELGT [o
Table XIX-V1 1 -HLA-B7-L 0mes11~P1BEach peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide is 10 amino acids,
and the end position for eachpepti'de is the start position
plus nine.
F~aJ Subsequenc Score
LRVMVPLPSL90.00LiF-9]-2___0.99
00
00
Table XIX-V1 1 -HLA-B37-1 0mers-191P4D12B3
Each peptide is a portion ofSEQ ID NO: 23; each start
position is specified, the lengthof peptide Is 10 amino acids,and the end position for eachIpeptide is the start position
pls_--e
I start Subsequence IScorel
1_T1 FQ RVM 1.00
IELLPR vMPPL -1
K M-_-LRmvmvPPLP LO.io
D 71[MVPPL PSLN P 10.075
FflLLRVMVPPL]F [0.03
Tabl XI-VI2HLA.B7-I1 10mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 25; each start
position is specified, the lengthof peptide is 10 amino acids,
Iand the end position for eachpeptide is the start position
plus nine.
[start]1 Subsequence [Icorej
6_ EPGCSYSTLJ200
][CSVMS EPEG 1101 1..i ifGCSYSTLTT 0.200
[IJIVM§EEPEGCS F[0.030][fEEPGCSYST 10.010]
I.i7K. ILSySTLTTI J90.1.7LMSEPEGCSY Fo.oo6
SEEPEGCSYSII j
[Table XIX-V13-HLA-B7- I]0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 27; each start
position Is specified, the lengthof peptide is 10 amino acids,and the end position for eachpeptide is the start position
plu nine.
IIS.~.tII Suseque c lcorel
jDVLADPQEDS 0.o150]
[T]I TVDVLADPQE 110.015j
Y VLAD DS .01
1 ijAjyDPQEDSG LO03
WI. VDVLADPQED R oJj-- 01
[Table XIX-VI 4-HLA-B7-l0mers-1 91 P4D12BJ
Each peptide is a portion ofSEQ ID NO: 29; each start
position is specified, the lengthof peptide is 10 amino acids,and the end position for each
p eptide is the start positionplus nine.
[LStart Subsquen [j cre
1[7 ASASLVAGTL 112d00SSN3 PPASASL '4.0 00
Ki-i [ESL VATLSV I0.600IF71]1 NPPA-SASLV 1LO-01!IT]IL9.SNPPASA FL1 501F~jI] -YAGTLS I0.060
Table XX-VI -HLA-B3501 -9mers-191P4D1 2B
Each peptide Is a portion of SEQID NO: 3; each start position Is
specified, the length of peptide Is9 amino acids, and the end
position for each peptide is thestart position plus eight.
iftftFu en -F r
I 78 AQQMVTqKYI1.00MM I RSAAVTSEF ][1o9-ooo
TbeXX-V1-HLA-B3501 -9mers-I191P4D12BJ
Each peptide Is a portion of SEQID NO: 3; each start position is
specified, the length of peptide is9 amino acids, and the end
position for each peptide is thestart position plus eight
su bsequei~ne] L ?7 KFT 81i7 P R Lg-.00-0L5iLRKPTGNGl oo
LA22IL~.~9ulYI 6000
L1j,]RLRVLVPPL L6.000I
71 J[DD EGA-EL I 6.I
[135 GSFQARLR L 5.0F0
4.00;
L287] GPPSV J 4.00L~il AQADGEY LO 3.026 IITGIRCPAGELI 3.000J
L2 I.A VTSEFHJ .0
1 I =QNLW I3.00029 I AE LES [L--00 0
13 EAL LLLLL 3.00pj356
D77 ILIMNHFJ 3.000]1=7 F~Jgs§PWsvrw LD=-566
FA-II VVV-VLM SRYIIZOOO IL75IILqPs-YNW]Lo00
li7 J1. 2.000. 1
Liiilj WGPEAWL 2 000L1.?F-PL-=H 91-~F 00K1
Ezz T' Fj Y qZR 0 zo
00
00
T able XX.Vl-HLA-B3501.9mers-1
Each peptide is a portion of SEQID NO: 3; each start position Is
specified, tihe length of peptide is9 amino acids, and the end
position for each peptide is thestart position plus eight._
StartI Subsequence Sco reLF44.]ItRSYSTLTTVI WOO0[-419-1EGHPDSL 15800 1
t6 il TD WL R1500
L3:1 J[qSR YHRRKAI 1.5001
F.L4iw~~ II E19 I foLIYIIL-LLLlLA F I1.0F P M F l 7o6 6
EjlF2. TQKYEEELJ]1.900]
=L6 2L Ep OK~
Li1~ LS j1.90F-L4-1LAwi:VID _[T1.o
~~LiF 1.ooo
'U38J D[SG Q VLj[F. 000C
L 2 iL IjHV 1. 0
531 EFLISSC~J FO.75
3 57 AALLF CLLV .11 0.6*00
LTable XX-V1 -HLA-B3501-9mers-1191P4D12B
Each peptide is a portion of SEQ1ID NO: 3; each start position is
specified, the length of peptide is9 amino acids, and the end
position for each peptide is thestart position plus eight
FL-tiI FSubsequence1 Scre
4 F J RIFEEG IO6039 IL SYKQ. IL0.600 I
Fi450]F PPVRNPLDGSQT- 0.600
F 72 T F0:600 1
GQPSN I0.500_19! [I ILQC 9.[I7 Kf.-r§i 1q07
=83 jj TQKEELT =L.520
I =.400~iF1~'
1 35 I E TVVL 0.400
Trable XXV2H A-3309mers-]
Each peptide is a portion of SEQID NO: 5; each start position is
specified, the length of peptide is9 amino acids, and the end
position for each peptide is thes__tartpositonplus eight.'
LPCLYRGS 2 .00
7F2GDA LPCL 0.3007O
jFF-KPCL 71 09
W I4 RC-LYRGG 0.01
Z-ZLJtCLRGj Loi
L able XX-W-HLA-B3501 -9mesI 91P4D12B
Each peptide is a portion of SEQID NO: 15; each start position isspecified, the length of peptide Is
9 amino acids, and the endposition for each peptide is the
start position plus eight.F t rPi S ubs eq u-en cejScr
Ii 7oDSQSEEPL=.6001FL771 _q9EEEI j .1 50 1Fi77KCLS~tGRI 0.030F7 71FrIffDPRSQS 0.0201
177 IH-I T PRSq IL7T 2
[Table XX-V9-HLA-83501 -9mers-1191 P4D12B
IEach peptide Is a portion of SEQID NO: 19; each start position isspecified, the length of peptide is
9 amino acids, and the endposition for each peptide is theI start position plus eight.
'7§tartliubseuen~i cr
I 0
Lj [iVP=CER=Gy1 20.000] 6-[TJITKAR=FIQCL 1I: .ooo][if jr[LYVHHCACF 5 .OO1OD7 1LII NPASASLV 4.00
UL11[ RGYFqa~fy ][4.00]F-F I[ _LTf NFFJ L.-=.000IfrLl LVAGL 3.000
1FiI KLKKAFRFI 2400OJIFFIYFYI 2.000
F [hITNF FL 1FlxY-KQ. GL 1O00O
F J FNFFFFL] FI.200--]
7j[ AGU=RITF [1L1.oOdPE~ILPFPL-NF ]I.00
L~i!.lLm~.IL Two0L 11 GLLqRPLjII.' -0 00j.~LI f1YXY± f 1I791 q
00
00
Table XX-V9-HL-A-B3501.gmers.IP4DI2B
Each peptide IS a portion of SEQ1I) NO: 19; each start. position isspecified, the length of peptide is
9 amino acids, and the endposition for each peptide is the
start position plus eight.I~J Suseqencej Score
I..-jI SNPPA SASL 1.00012!VVFFIYFY .000
ILLRITFNF 1 .000J13iJ ITFNFFLFF .19 I
96 ICLLLGLL F-1 6-6.85 1 RK tKKKAF f .600
E57]jj GFMQPW I=SA 0.500
I62t ASASLVAGT050
L6 4]...A.S-AGTLS! (561 GSSNPPASE 0. 0-
SQAGLELLGS 0450 Il
F LLAGLLRI 01]P 4 00L' MES:Hy.JL0.400J
2 Z AfRFIQCLL L 300L A1.j LLRIT 07.=300
DO MRRLAIJ 0.240
L P[ ASASLVAJ 0 .200
98 CLLLK 0.20034I FYFYFFLE E.O~OoiLVAGTL SijL 20=0
AGLELLGSSLl0[297 VFFIYFYFY L o oo-1191LCERGYFJI 0o
Lvi] TLSVHHCAc 0100
ll HQGVNSCDC .0FF IYFY F
11i. LRITFNFFL 010LGSSNPpA P A 0
32 IYFYFYFFL 00
I26! PLVVFFIYF 0.100
;FTT.b1~eXX-V9-HLAB3501-9rers-191 P4DI2B
Each -peptide Tis a portion of FSEQID NO: 19; each start position is
specified, the length of peptide is9 amino acids, and the end
posiion for each peptide Is the
,sar poito plus eight.[Sta Subse Serce
F1- TFNFFFLFF F 0 LIo I1447PSHAYVY H jG 0.00
109l TLSH CA~?9! [..100.
TT] FFLFFFLPF 0~j.io00
1[11I4] QGIFM~ 0100?74 Z41.t ACFESF1 ~o
7 HCACFEFff]F -090.[120J FEGYFQGF 0.100--
68! AGTLSVHHC o,0129 1MWEGTI .100j
100__fL] gL SHYV .090!
j[.84_IL KK-Li-KK 00-1105.! [TYRP9HC2 0.060
WIRRELLAGIL .060SjESFTKRKKK 0.05043ESHYVAQAG L. 050
If6 7lCACFESFTKI 0.045
[-C2 FTKRK'K-KLK 0.0p30
51 GLELLGSSN. 30~I 90j[ KKAFRFIQCJ[02L?.9.JLFLPFPLVJ0.2[Tl LEMESHYVA ~2_
I16 VRPLQHQGv L 0 2
1I114JVN-Lc cER~L01
I x 1 02[
EA JT72 =~HFj 01
18 FLFLFFFLPFP 1[0.010I 2 5_QGIFMQAAp II0.-010-1
TbeXX-V9-HLA-B3501.9mers.II Tbl 19IP4Di2BEach peptide is a portion of SEQI SD NO: 1; each start position is
specified, the lngt of peptide is9 amino acids, and the end
Position for each peptide is thestart position plus eight.
Ia r SubsequenceLco 197 ii CLLLGLLK 0.010J
'I1 2HKLU yRPLE1S 0010
ITable XXVOHL-30 19P4DI 2B
IDNO: 21; each start position is
speifid, helength of peptide Is9 amino acids, and the end
position for each peptide is thestart Positionjplus eight.
OStarti Subsequen~ce Score7FiCPAGELGTS
GTSDVVV L .400IsjfLGTSDVVA y]0.300j
RCPAELGT 0.200
57~ AGELGTSDV 6tLTSDW7I 0.020
WL~~~i~p j .ooJIGRCPAGELG0. 1
Table XX-V11-HIA-B33501.IF 9mers-191P4D128
FEach peptide is a portion of SEQID NO: 23; each start position Is
*specified, the length of peptide isamino acids, and the end
Position for each peptIde Is theStart Position DIus eloht-
00
00
Table XX-V1 1-HLA-B3501-9mers-191P4D12B j.
Each peptide is a portion of SEQID NO: 23; each start position isLspecified, the length of peptide is
9 amino acids, and the endposition for each peptide Is the
sart psition plus eight.,FI. jj[Sibsequeflcell ScreI
651 FLLRYVYVPPUF 0.001
Table XX-V12-HLA-B3501-9mers-191 P4D1 28LEach peptide is a portion of SEQ
ID NO: 25; each start position isspecified, the length of peptide is
9 amino acids, and the endposition for each peptide is the
start position plus eight-
L7CLTOmmd 11-0-i-
F~fl~.SEEPE CS 0.0
0.100
7T][EPEGCSYSI 0.020
LTable XX-V1 3-HLA-B3501-9mers-1 91 P4D12B
Each peptide is a portion of SEQID NO: 27; each start position isspecified, the length of peptide is
9 amino acids, and the endposition for each peptide is the
start position plus eight.
Liii SQVTVDVL 0100
'F Y8-L pPFR pSG [9.q jf7YIILIYDLADPQI 0.03-
91- qK F-.
I Table XX-V14-HLA-B3501-9rers-191P41281Each peptide is a portion of SEQID NO: 29; each start position Isspecified, the length of peptide Is
9 amino acids, and the endposition for each peptide is the
start position plus eight.IF Susequence i~~
4]~SV~T. F.000 I7T] SNASL-ASL I TP q
2 0.500
ElF SSPPASA Tgso_1 5 ]AASLVA L.201
PA-LA 1 03
Table XXI-V1-HLA-83501-I Omers-1 91 P401 2B
Each peptide is a portion of SEQ]ID NO: 3; each start position is
specified, the length of peptide is10 amino acids, and the end
position for each peptide is thestart position plus nine.
STart I Subsequence Score
F!9I[ R AKPTGNGIY 3.6.000
Table XXI-Vl-HLA-B3501-1omers-191P4D12BI
Each peptide is a portion of SEQID NO: 3; each start position is
specified, the length of peptide is10 amino acids, and the end
position for each peptide Is thestart position plus nine.
!a~iL eLun-ce 11[Fj3 L~I 3.000
201
[5L vvv SYJ 2.000F276 IPPPSYNWTIRL 2.000
I?]IRVSTFPAGS _F-ZOO1
FT,1_ ET-sDRvT-WL I 100E62] _LLVVVVLM][2.000LIN ]THLHVSF QWO
[144 RVLVPPLPSL 12.0.00[9J STLTFVREI.j[
10-q~ [WGPEAWLLL j 2.T009j
L§ iljAST.IL9PP U 9.7. RNPLDGSVLL Di2.000
24]j FLAEASVRGL .000
IIVRVDGDTL Lf.500.F192 jSSRSFKHSRSj 1.500[1 21_SRMNG PJ1.600I7 kI EMWGPEAWLL TT99
[j426 ILKDNSSCSV 1 1.200
141Ij QPEESVGLRA 120
1.1.03I[ PPRNPLDGSVJ 1.200
LjI..§Y VVVGVI L9.[Wfl[DQDEGIKQAMJ[1.200 I
IT1___LT !rHiHVSFL1 [1.000 1flj UTCSHPGL_1LI9q2i
[L??zFI jPGLLJul -OK0Fjz]II CPGELi 1F.000
VSASWW-VGV IL1999-LPY. 1[ DSGEQVGQVA 111.000FTI 94Jj RSFHSRS AAI jI7000 KM34! I..§SMNGQPLTC ILT.00
1581 qmi QMTQY- EE J[ i o
132 GPALGQ Lj 2i 0.0001
[4091 RSQPEESVGL j 15.000]L4O7LDltRSqPEESyjI12. 000 IFT] L i 10.00o0 I
F1 6]LjI HPGLLR 9!.000.J
'j 32 TRENSIRRL 1L.000
383 Q-K(EEaLTli 4500
F[2 PSVTWDTV. 4.000KFT5EGNGIYIN ',L4.00J
[T7Lf] LSEGQPPPSY~j L.0P..-:1_9 L LtKY9 7113.000
00
00
Table XXI-V1-HLA-B3501-LPmrs-l91P4D12BEach peptide is a portion of SEQID NO: 3; each start position is
specified, the length of peptide isamino acids, and the end
position for each peptide is thestart position plus nine.
[ar]l _Subsequence. Sore,
F375[ VIAALLFCLL F157000I 35-JL WGVqIAL 1_1.0,I 352 1_ WGVIAALLF D~:00.I
-L .VVIAL_ 1.T7p
1L~zi SNEfSSRD S- .1.000 .1[501GIYlNGRGHL]I 1.000
E,,L LLLLLASF iOq9J579 i qffPPRNPL 1 .1.000L 41ylWG1DAKL .'=00o
[Fi 1Ij AGSFQARLRL i'1.00GIKQAMNHFjEOO
'12i[FSSRDS Q\1V 1A.000lL1_ AVSEFHL-V- LO.900i
r 7]LWRYDAGEGA .00j
K-~QLVA..1 0.800 1
L~9ILSCTAES~j[ .750j1. iiDAGGQ I 0609j5[2331 V 0QIHLY[.60 _1
F1LP GQ91-Tl 0.600
L!561[ jAALLFCLLV j.09]
I 2 [HDsLKDNSS .60 L-O30911 HSGIYVCHV I[0.50 FO
28J[ AVRGLEDQN IF 0500]
1 74 !EGSAVTW I 0.500425 jjDSLKDNSSOS I .02013811 DSGKQV0DLVS d-O:0:1jlj 71 JI EGQPPPSYNW0.500[T7 GAEMWGPEA i0.0
Table XXI..VI -HLA-B3501 l0mers-191 402
Each peptide Is a portion of SEQID NO: 3; each start position Is
specified, the length of peptide Is10 amino acids, and the end
position for each peptide is thestart position plus nine. J
Start, Subequnce i 339i52!9Y ]'FA0.45 0
j INPLDGSYL~LR P.RKAQQM 91TQKY0.400.]
452][_REIETQT1ELL ]f 0.400389 D 1LTLTR ENSI
Table XXI-V2-HLA-B3501-1j1iners-i 91P401 2B
Each peptide Is a portion of SEQID NO: 5; each start position is
specified, the length of peptide is10 amino acids, and the end
position for each peptide Is the__start position plus nine.Strt Sbsequence T] LGDAKLPC L F52000-]
711 LPLYGDSG1 020]
]I DAKL-PGLYREj[ 0.090
7]CLYRGDSGEQ I 0. 0151
711111 CLYRS jI01
10.00-11
Table XXI-W7-HLA-B3501 -Ilomers:91P4D12Bj
Each peptide is a portion of SEQID NO: 15; each start position is
specified, the length of peptide is10 amino acids, and the end
position for each peptide Is thestart position plus nine.
[arj ~~sqecjscore
FEPRQSEPEL q-i.WLJ. EEPEGRS 1I0.200][11-]_RSQSEEPE9R]ff. 0J
HSHTDRSQ[ 75]
[Table XXI--HLA-3501-K I mers-191P4012B
Each peptide is a portion of SEQID NO: 15; each start position isspecified, the length of peptide is
10 amino acids, and the endposition for each peptide is the
start position plus nine.[stiart ISubsequence jco9e]4i HTDPRSQsE il 0.003
[7ITDPRSQSEEP I0.001L171711 PRQSEEPE9_JI aooOJ
Table XXI-V9-HLA-83501-
L 0mers-191P34D12B Each peptide is a portion of SEQID NO: 19; each start position isspecified, the length of peptide is
10 amino acids, and the endposition for each peptide is the
start position plus nine.
I~ .r lrE eI!~p
[.7i SNPPASASL J' 5.000
I L~9 .T-'LI .6?L NI!AQT..L 5.000
I IPLIRPLQHQGVNS I 4.000
[UIaLGILLITF- 000Li LITFNFFLJ .oooJ
[2Ki I[2_ I
[LU_[Y§CD .000105LK LQQ 1.2000
L~iL.AYA5-0 -0 1.
M Ij. fLffFLPFPL j[.000[1p 1 _L !KVPL LL99P J
[1171LRITFN..l 1. T000]I ~~JI.2 TT9b- -1 0
00
00
Table XXI-V9-HLA-B3501-10mers-191P4D1Bj
Each peptide is a portion of SEQID NO: 19; each start position isspecified, the length of peptide is
amino acids, and the endposition for each peptide is the
.start position pus. nine. _jIS~ttI .Subequece ScreJ
L~i.FIYFYFYF 0~
27 3 LVVLFFIYFYF 100
LPFLVVFF [1.000
I 86 KKLKKFRF .600-,
L125L~GFMQMWJI0.5001
[T LLGLR 0.400.JII1[:19]. CERGYFOGIF 0.300'
S.ASLVAGTLK][ 0.300
F~i _AFRFlqClL IL I49 1qAGLELLGSS I -Too0
l I ERGYFqGIF MJ .200
F58 S- Np-PPAsAsLVJ L[F2i[TO ,I KKAFFQCL]E.200 j[33] IYTIXLfM1I .200
F506 AGLELLGs SNJI 0200f
F26 [P.LVVfflYFYJ_0.200
[T7 FjFLMEtl-IY F___2.9[~ji.._RfIqCLLLGL COO.20
lAB jAQGLELLGS 1 0.150
[21J[FLPFPVVF 1.1001
Lf019 _Iff!YFYFYFF F- 910-0-
F §Y JI f SVHCE .100,I LGSSNPPS _q.10f169 TLSVHHCAC F0.1001
451 HVAQALELJ 0.1001
16 jFNFFLFFFLPF o io
I 2 NFFPEG 0j 0
AGTLSqj VHHCA I 9t92J
I Tabe XX-V9-LA-B33501 loes191P4D128J
Each peptide is a portion of SEQID NO: 19; each start position isspecified, the length of peptide is
10 amino acids, and the endposition for each peptide is the
start position plus nine.
W AGI qlLLRITFN ~I .1 LLGSSNPPAS] _0.100J
VHH cCFE 6O.166J
UL2] FFIYFYFYF JI .PJOO IWLA LLRIT1L010
E87] .iI 0.080LJ:81f IY !SYiL 0.0601
WI KKKRFIQIL.6=2 I_ RELLAGILL 0.060
E L1 SVHHqCF_ [q05osj
F~TF\~QAGELL]I .030
Ifl ASASLVAJI 0.030]IFT6Lq~FESFTK J aO-30 I
II~fl~rKR~KLK I0. -03-0_LKKFRFIQC ILQ~
ILEFEMESHYAQA IL09Pi139D _yLEA SHYVAiLj 0.30
[111RYFqGIFMVQJ 020
E4 21FPLVVFHI 020
D_9 IJLLFFFLPFPLVI .?9JFFLPFPLW][9020J? O
113 LqvnYsPqEGL:9[.1I 11ii H9vysUll.916 .1
_jl]ffFFLFFFLP 10 oo
T9 LLLq9LKVRPJi[.9q19.LVAGTLS§VH- [0.0 1
[FLL4KvrPQ o
Efi LL L g[ GI[ QAPEII
I l979jL tK I(.00.
Table XXI-9-H11A-B33501-10mers-191P4D12Bj
Each peptide is a portion of SEQID NO: 19; each start position isspecified, the length of peptide Is-
10 amino acids, and the endposition for each peptide is the
-start position plus nine.
.102 [_GLLKVRPQH1 0.0101
Table XXIMV 0-HLA-B3501 -1lomers-191P4D12B
Each peptide Is a portion of SEQ1ID NO: 21; each start position Istspecified, the length of peptide is
amino acids, and the endposition for each peptide is the
start position plus nine.
1[itg_ Susequen c c~.$17 1OJ[GSDVMTVL IL 2.000
RCAGE L L Sry 0L.300 1
i _il o .SD[ 0.200fl]IGETSIDV V IL.20 1
IK-EGTP 0.10-60IT1L 2I.19oe[7]TGRPGEG 0.030
IFLTRPAGE_ LGT .9 11 LEE U Y Li 0.010 I
FTable XXI-Vi1-HLA-B3501-1 Omers-1 91 P4D1 2B
Each peptide Is a portion of SEQID NO: 23; each start position isspecified, the length of peptide is
10 amino acids, and the endposition for each peptide is the
sta rt p o siio n plus nine [Start L-Sbsequ ence IS.ore .1
L ]9RLRLF Y~YV_1.800_J=9 FlLVIV PPLPSLNFT0.10I
75 ]LRRV VPL 0.06
LtIIVPPLPSLNP.IL=.010.M LRY- IL2 IWAR LLRM PI 901
00
00
Table XXI-V1 2-HLA-B3501 1~ 0mers-191P4D12B
SEach peptide is a portion of SEQID NO: 25; each start position isspecified, the length of peptide isl
amino acids, and the endposition for each peptide is the
start position plus nine.
Start Subsequen c L e'
L]L ECYSLI_60002 [tVMSEEPEGC§SILO.200
[TiSVMEEPGCI 50 JE f[ ICZ[GSYST LnT I~ 0.100
K771PE-GS L 0.001
[T TTTR E 0.001
[Table XXIMV3-LA-B33501-lmers-191F4D12B
Each peptide is agprtion of SEQID NO; 27; each str osition isspecified, the length of peptide is
10 amino acids, and the end1position for each peptide is theL-start position plus. nine.
[Sart LSubsequence j Sco re
FEI DSQ VT V RVL: II 0.500[TQEy ?Fi9EDS 0.100
f YI~~Di~oi[ .020:*
'[211 QTrDVLAD]32 F0.015
[T7VDVLAPQEJKII0 2
~IT able XXI-V4-HLA-B3501-L. 10mers-191IP4D12B
Each peptide is a portion of SEQ1ID NO: 29; each start position is
spcfethe length of peptide is10 amino acids, and the end
position for each peptlde Is thestart position plus nine, j
[St a- Subsequ ence 1. SceI~ASALVAGL 5.000.F .0
1G- AS IIGTS 0- .00MW AGSII. 0J
Li7ISNPA-yI 0.200.
LIIIIJP PSASL VAGI 0_.020 j
Tables XXII XLIX:
00
00
TableXXII-V1-HLA-Al-19mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score437SEEPEGRSY
1107 PDGSVLR 21305 LTTEHSGIY 21
3 TTEHSGIYV 21159 LEEGQGLTL 20
52 GLEDQNLWH 2HIDPRSPE
SYGLHVSPAY 1262 GREGAMLKC 19
SPEESVGLRA 196 VqENGThRA
494 AKPTGNGIY 191I GPEAWLLLL
ELALLHSKY 12 SEGQPPPSY 1
VLDPQEDSG 1YEEELTLTR 1TSDVVTWL 7AQELALLHS 17
1 DTEVKGTTS 1SVSHPGLLQD 1
LSEGQPPPSF RVDGDTLGF 17
38KQQMTQKY 1
f SGEQVGQVA 1
SALEEGQGLT 1
7 SDSQVVD 1SWVVLMSRY 1
SQIELLSPGS 1
1QDAKLPCFY 146 MSEEPEGRS Li~
TableXXII-V2-HLA-Al- 1I 9mers-191P4D12 1
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[Pos 123456789 score
QDAKLPCLY I17GQDAKLPCL E 0
TableXXII-V7-HLA-Al-9mers-191P4D12
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.IPosi 123456789 score
3~ HIDPRSqSE 20
TableXXII-V9-HLA-A1 9mers-191P4D12
Each peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[os 123456789 scorel
25 FPLWFFIY 212 VFFIYFYFY 2
11 NSCDCE 191FFLEMEHY 16
1 ITFNFFLFF it11 LWFFIYFY 1
11 SCDCERGYF 1
211FFLPFPLW 1FLEMESHYV i 1Z
1 GLELLGSS N 111 CERGYQG 1
4 ELLAGILLR 1SSNPPASAS 11
SSLVAGTSV 119 FRFIQCLLL 1
9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.s 123456789 score
SAGELGTSDV 13SGTSDVVIhV 1
RCPAGELGT BGRCPAGELGZ
TableXX I-V1 1 -H LA-Al 9mers-1 91P4D1 2B
00 Each peptide Is a portionof SEQ ID NO: 23; each
start position is specified,CK1 the length of peptide is 9
amino acids, and the endposition for each peptideis the start position plus
eight.
FP;~ 1234j 5 6789 Fscorel
TabeXXIIMM2-LA-A1
cK1 Each peptide is a portionof SEQ ID NO: 25; each
ri start position is specified,00 the length of peptide is 9
amino acids, and the endc~-K1position for each peptide
is the start position pluseight,
Pos112456789
TableXXII,-V1-3-HL-A7I-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptidle is 9amino acids, and the endposition for each peptideis the start position plus
eight.[Posj 12346789 re~~[7I]LADPQEDSG IDIJTVDVLADPQ]
EJVTVDVLADP 9JIEAQVTVDVLAD 1 7
511PPASASLVA 7
D~S~PSS
[FGSNP] S
1
00
00
TableXXIl-V1-HLA-A0201-9mers-191 P4D1 28Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight
123456789score53 EIETQIELL 16
IYINGGHL 16
[I GPEAWLLLL 2 PEAWLLLLL 15
LLASGR[ 15E GELETDW IDSGEQMGQV 1
SEGAQEAl.L 15
j FQARLRLRV 1510 RLRLRVLVP j
MNGQPLTCV 15NGQPLTCW 1
0 LLQDQRITH 1hLHVSFLAEA 15
270 CLSEGPPP 15PLTTEHSGIHSGIYVCHV 1
VLDPQgDSG 153 RAKPTGNGI 1
TableXXIll-V2-HLA-A0201-9mers-
191P4D128
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
eight.[os 123456789 scorel
1 GQDAKLPCL 17-CLYRGDSGEL3
KLPCLYRGD 134 AKLPCLYRG 1
TableXXIII-V7-HLA-A0201-9mers-
191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
3 HTDPRSQSE 8
F8 SQSEEePEGRlI1 SHHTDPRSQ 4FJRSQSEEPEG 3J
TableXXIII-V9-HLA-A0201-9mers-
191P4D12BEach peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
98 CLLLGLLKV 315 LLAGILLRI 296SLVAGILSV 29
95 FIQCLLLGL 2639 FLEMESHYV] 2146 AQAGLEL 2147 VAQAGLELL] F2191 KAFRF!QCL 2199 LLLGLLKVR 20
101 LGLLKVRPL 191jjMRRELGI 18
58 SNPPASASL 1863 SASLVAGTL 1888 KLKKAFRFI 1818 FLFFFLPFP 1721 FFLPFLW 1722 FLPFPWF 174 LLGSSNPPA 1
96IQCLLLGLL 17SELLAGILLR 169 ILLRIIFNF 6
F-44 SHYVAQAGL 162 ASASLAGT 166 LAGILRIT 158 GILLRITFN
TableXXIl-V9-HLA-A0201-9mers-
191P4012BEach peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
11 LRITFNFFL j100 LLGLLKVRP
A0201-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 re
SGTSDVVTW 201
F--3[8 LGTSDVVTV 19
[5 AGELGTSDV [6 GELGTSDW
ELGTSDVVT 13SCPAGELGTSI
TableXXIII-V11-HLA-A0201-9mers-
191P4D12BEach peptide Is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score8 VMVPPL.PSL 295~ RLRVMVPPL 2 ARLRLRVMV 173 RLRLRVMVP 14
TableXXIII-V1 2-HLA-A0201-9mers-191P4D12B
00
00
TabeXXI Il-Vi 3-H LA-A0201 -9mers-
191 P401 28Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos 12468 Fscore
7 QTeXIIVV-LA
A0201 -9mers-191 P4D12B
Each peptide is a portionof SEQ ID NO: 29; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
FPos 124679score
F- ASASLVAGT 16FL1] GSSNPPASAF 10F-4 NPPASASLV
PASAS LVAG
TableXXIV-V1 -H LA-A0203-9mers-
191 P401283
N-lolResuitsFound.[TabieXXIV-V2-HLA-A0203-9mers-
191 P4D12B
-NoResultsFound._[TabieXXIV-W-HLA-A0203-9mers-
[191lP401 28
NoResultsEound. [TableXXV-V9-HLA-A0203-9mers-
1911P401283
[P os 12345789 sore]
NoResultsFound.[TableXXIV-V1 0-HLA-[A0203-9mers-S 191P4D12B]I
TabIeXXIV-V1 1-H A-F A0203-9mers-191P4D12B
E os 124679score]IFNoResultsFound.
TableXXIV-VI 2-H LA-A0203-9mers-
191 P4D128
99124567coreNo~suis~ond.
TabeXXIV-VI 3-H LA-A0203-9mers-
191 P40128
Po134679scoreNResultsFound.
TableXXIV-V14-HLA-1A0203-9mers-
191 P40128
TableXXIV-V4-HLA-FA02 03-9mers-
NoResults ound
TableXXV-V1 -HLA-A03-19mers-191 P401 28
Each peptide is a portionof SEQ ID NO: 3; each
start position Is specified,the length of peptidle is 9amino acids, and the endposition for each peptideis the start position plus
eight
14 0RRRLP 2
180 VTWOEVK
451 TWG DAK 2
24] DDLF 2
F2-1 LLLAF 2
459 DLSP9G
13621 CLFV\V 19M Fj415 EQN1 [1]
00
00
TabIeXXV-V1 -HLA-A03-9mers-191P40128
Each peptide is a portionof SEQ ID NO: 3; each
start position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.s 123456789
I9GLEDQNLW-II 19g QVDLVSASV 1
Isw l SWGA[191366LMSRY
137RKAQQMTQ]19FVENTLR][ 19ELETSDVT 1 8
QVAWARVD 18I1QELALLHSK 18
RVSTFPAGS 1829HLVPSRSMN 18SHIGREGAML LJ1
lI1RLDGPLPSG 13TLGFPPLTT 7i
SGIYVOHVSN J[DLVSASW IIGVIMALLFC I i1
j~JLLFOLLVV Lj1365 J 8417 GLRAEGHPD 118
4TVREIETQT 1J491TLRAKPTGN 1
F-2][ZI PLLGMW 17![6LLLLLLLAS [7F-16
191 LLLASFTG 17
158 ALEEGCLTI 1717641 GLLMSCT 773511 WMGIAA 171368 W LMSRYI 97!
WLLLLLLLA 1681 ASKYGLH 16
1971 KHS AAVT 16224 WHLLQ 16
TableXXV-V1 -HLA-A03-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight123456789 o
D ISLGAEMWGP 13431VLGQDAKLP LE 491KLPCFYRGD 13F SKYGLHVSP 13
F 124 EYECRVST F 13LVL139 ALLVV 123AVTSEFHLV 13210 LVPSRSMNG 1236 ITHILHVSF 13
27NLWHIGREG [j1120CLSEGPP( 13
3041PLTTEHSGI3ssDSQMTV 13
391DVLDPQE3 D DPQEDS 13
LDPQEDSGK 13151WWVG!!M 13
371LMSRYHRRK 13
SRSYSTLTTV 113I4GIKQAMNHF IIi1
TableXXV-V2-HLA-A03-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[s123456789
SKLPCLYRGD II[11QDAKLPCLY j 1~
TableXXV-V-HLA-A3-19mers-1 91P4D12B 1
00
00
TableXXV-V9-HLA.A03.gmers-191P4D312B3
Each pepUde Is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 sor
FIGIL-LRITIN [14
26 -PLvvFFIYF IF14
F28WFYFF 1F53 ELLGSSNPP f 14F72SHCCE 1
F76CCEFK 1
88 LKAFI 14
[11 3VSDCR 1
[126GEQAP 4F21] FP F1 131[861KKKKFf J
38 FFEEH 12
EFKKK 123 LFWF 11571SPASS 1
F63SASL 7GTL 1TLSHHAC 11FQLLL 1
107 PLQHGVN 11,[TableXXV-VI 3-HLA-A03
[9mers-1 91 P4DI 2BEach peptide Is a portionof SEQ ID NO: 27; each
start position is specified,the length of pepuide is 9amino acids, and the endposl~on for each peptideis the start position plus
I eight.[pos 2468
76 DVADE
I~ VLADPQ 1VLDQEDS 121
00
00
TableXXV-V1 4-HLA-A03-mers-191 P4D1 28
Each peptide is a portionof SEQ ID NO: 29; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.os 123456789 score
F -2SSNPPASAS 118 SASLVAGTL 11
3 SNPPASASLZ 99 ASLVAGTLSZ 9Z
F NPPASASLVZ 8PPASASLVAZ 8
I GSSNPPASALZ 76 PASASLVAGZ 7
I ASASLVAGTZ 7
TableXXVI-V1-HLA-A26-9mers-191P4DI12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
PosI 123456789 score42 WLGQDAKL 19
L84184 DTEVKGTTS 19E3294 RVDGDTLGF 19331 DVLDPQEDS 19337 EDSGKQVDL 19
54 GVIAALLFC 19365VVVLMSR 191 EMWGPEAWL 18
60EQVGQVAWA 1871 DAGEGAQEL 18
145 VLVPPLPSL 182361 ITHILHVSF 18237 THILHVSFL 18313 YVCHVSNEF 1844918191 TTVRElETQ 1(18
VTVLGQD 17
13281VTVDVLDPQ 173551 VIAALLFCL 17411 TWLGQDAK 1
57 DSGEQVGQV 16
11301 STFPAGSFQ. 16
=1
298 DTLGFPPLT 1613271 QVTVDVLDP 163491 SVVVVGVIA 1616 MTQKYEEEL 16[450 TVREIETQT 161413 EESVGLRAEI 1414 ESVGLRAEG 15
14731 DQDEGIKQA12 PEAWLLLLL 14
[14 AWLLLLLLL 14[17 LLLLLLASF 14
VVLGQDA 4F16ol EEGQGLTLA 142601 HIGREGAML 14
345J LVSASVVVV 14367 WVLMSRYH 14
TableXXVI-V1-HLA-A26- 19mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[Pos 123456789 sore387 EEELTLTRE 14
(437 SEEPEGRSY j 141452 REIETQTEL 14
1472 EDQDEGIKQ 14476 EGIKQAMNH 14484 HFVQENGTL 14485 FVQENGTLR 17
F1 GPEAWLLLL 1345 GQDAKLPCF 13
109 DGSVLLRNA 13135 GSFQARLRL 13142 RLRVLVPPL 13146 LVPPLPSLN 13161 EGQGLTLAA 13222 TCWSHPGL 13249 SVRGLEDQN 13320 EFSSRDSQV 13329 TVDVLDPQE 13344 DLVSASVW 13353 VGVIAALLF 13393 TRENSIRRL 13421 EGHPDSLKD 13438 EEPEGRSYS 13446 STLTTVREI 13
459 ELLSPGSGR 13o501 IYINGRGHL 1 13
TableXXVI-V2-HLA-A26-9mers191P4D128
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789
I GQDAKLPCL 12 QDAKLPCLY 11
00
00
TableXXVI-V2-HLA-A26.9mers-1 911P40I13
Each peptide is a portionof SEQ ID NO: 5; each
start position Is specified,the length of peptide is 9amino acids, and the endposition for each peptidleIs the start position plus
eight.
[PoI 123456789lIcr
J 0A-KLPCLYR F
TableXXVI-W-HLA-A26-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos] 1l24567891 [sr
TableXXVI-V9-HLA-A26-9mers-191P4012B3
Each peptide Is a portionof SEQ ID NO: 19; eachstart position Is specified,the length of peptide Is59amino acids, and the endposition for each peptideIs the start position plus
eight.
IP-o s 12 34 5-6 78 996iQCLLLGLL j14j 4 TFNFFLFFF lFi1-151 FNFFLFFFL 1
F26 PLVVFFIYF][I)F381 FFLEMESHY 13j931 FRFIQCLLL 1
101LGLLKVRPL]1105IKVRPI QHQGI 13
TableXXVI-V9-HLA-A26-9mers-1 91P4D1 2B
Each peptide Is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
eight.[Pos 123456789F27 LVFIFY 228 WFFiYFYF F2413 ITFNFFLF 246 YVAQAGLEL 2
120 ERGYFQGIFF 1923 LPFPLWVFF F18
FIQCGL1ESFTKRKKKF16
F91 KAFRFIQCL ]F16
[ELLAG LLR f157 AGILLRITF 115]66LAGTLSVH
12 RITFNFFLF 1429 VFFIYFYFY 14
TableXXVI-V1 3-H L--A26-9mers-191 P4D1 28Each peptidle is a portionof SEQ 10 NO: 27; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
DI~ DVLAQD 1DVTVD-VLAD7
I~ TVDVLADPQ 12~
[TabIeXXVI-V1 4-HLA-]A26-9mers-1 91P40128]Each peptide is a portionof SEQ ID NO: 29: each
start position isspecified, the length of
peptide Is 9 amino acids,and the end position foreach peptide is the start
position plus eight.Pos 123456789 fsc-~
D SASLVAGTh 1L:1 ASASLVAGD PAASVA F-
I
00
00
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
F0 Q PPPPRNPL13 GPEAWLLL 231 PPSYNWTRL I
1106 NPLDGSVLL122287 GPLPSGVRV 2
KPTGNGIYI4I1 LPSLNPGPA 1
EPEGRSYST 11 MPLSLGAEM 1818~ EMWGPEAWL [T
QPPPSYNWT 1LPSGVRVDG 1
33 EDSGKQVDL 1RLRVLVPPL j
151 PSLNPGPAL 16[2 TGRCPAGEL 1
TSDVVTWL 1GEGAQELAL 115
3 PPRNPLDGS l
132 FPAGSFQAR 1145 VLVPPLPSL 1471 VPPLPSLNP f159 LEEGQGLTL 15
SAWLLLLLL 1SPAPSVTWDAPSVTWDTE
21311SRSMNGQPL351 WVGVIAAL 14
362 CLLWVWL12 PEAWLLLL 1
1 EAWLLLLLL 1CPAGELETS 1
42 WLGQDAKL 174 EGAQELALL 13ISPAYEGRVE][ 131
1 RNPLDGSVL] 131GSFQARLRL 131
1 QARLRLRVL 1161 EGQGLTLAA[ 11
TableXXVII-V2-HLA-B0702-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight
Po 123456789
L1GQDAKLPCL 13
6 LPCLYRGDSII 11
TableXXVII-V7-HLA-B0702-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos 123456789 oreD PRSQSEEP 1j
TableXXVII-V9-HLA-B0702-9mers-191P4DI2BEach peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eightPos 123456789
LPFPLVVFF 2160PPASASLVA 9 NPPASASLV 17
SYVAQAGLEL 14AFRFIQCLL 14RELLAGILL 12
[is FNFFLFFFL 12
22 FLPFPLWF 12
[3 YFYFYFFL 6 GSSNPPASA 7i/5 SNPPASASL 2
SASLVAGTL 1
FRFIQCLL
00
00
TableXXVII-V9-HLA-B0702-9mers-1 91 P4D1 2BEach peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
I eight.7Pos 1l23456789 -icor
1FI QCL LLG7L T 12
1 017 FGRP 12
72 RRLAI 11
13FITFNFFLFF 1
FFPPV 1111
47VQGEL 1
81 SFKKKL 1911 KAR DQL 196 ICLGL 1
1179 EEEFQI1[129 QAP EGT 1
1 FLP0L11
[42MSYAA 1
TableXXVll-V1 0-H LA-B0702-9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
eight.
[posI 2468[1F CAE3]S 1
[ELGSVTL2D j 'TA'TV 1
TableXXVII-V1 1-HLA-1130702-9mers-
191 P4D12BEach peptide Is a portionof SEQ ID NO: 23; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.,
IEos 123456789] score]1
[TabIeXXVII-V1 2-H LA-B0702-9mers-
191 P4012BEach peptide is a portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.H I 123456789soeDI EPEGCSYST 19~
STableXXVII-V13-H LA-1B0702-9mers-
191 P40128
Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos 123-4567891 scr
D] SQ V V DVLA EF EA1QVTVDD F-4,D1VLADPQEDs 12]
TabIeXXVII-V14-HLA-180702-9mers-191P4D12B
Each peptide Is a portionof SEQ ID NO: 29; each
start position is specified,the length of peptide Is 9amino acd s, and the endposition for each peptideis the start position plus
eight.
[P PA
[TableXXVIII-Vl-HLA-B08-9mers-1 91P40128
Each peptide Is a portionof SEQ ID NO: 3; each
start position Is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos 123456789
337 EDSGKQVDLF 23
4791TLAPG4777GKANF 2493 RAGG
362 CLVVV 19
00
00
Table)(XVIII-VI-HLA-B08-9mers-1 91RPDI 2B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
Pos F 1234-56789 scor
F1T1 G PE AWLLLL0 17EALLLL 17
2 T GR CP AGELQ 17
F7 1] ALPF 1
LE AGEAQE 17
124 EERSF 1145VVPPL 1
[2 PPS7-7] 17
78~1 QD9RPL7hF1 PALE G G 16
247 FAV LE 16
265 AUCS 16267 MLCLEG
356 EALCL374 YHRKQM 6i439EEG YS[ I[453 ITTEL]
I 7DALCYR[1AA5OGf
[Fol PPR6L 15231 LQQTI 15
245LESVG 152 60 HIREM 15355 E9ALFL 1
1369 VLSYHRt1410O 15ESGLE~
113 LRAQ D 14
202 AAVT E 14
1411 AEHPDL 14h
TabeXXViIl-V2-HLA-808-9mers-1 91 P4DI 2B
lEach peptide is a portion]I
of SEQ ID NO: 5; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
I_ eight
Epos 123456789 IscorelF- G QDAKLPCHO F211
STableXXVIlI-W*-HLA-1B308-9mers-1 911P4DI28 JEach peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
rTableXXV I I -V9-LA- 1BOB-9mers-191P4D12BjEach peptide Is a portionof SEQ ID NO: 19; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start posito pu
eight.Id
11031LLKVR-PLQH JF*821FTKKL
88 KLKFRILiLLLVRL 9
F8 11SKRKL jKRKKKK4]I~
[86 DKAKAR12i110 LLITNF
63 AVAGTL [1 J
91_ KAFRFIQCL ~5
TableXXVIII-V9-HLA-B08-9mers-1 91 P4D12B]Each peptide Is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight._123456789 Isor
F95 FIQCLLLGLl
F2MRELAG 14
26 PVFIF 1
80E SF KR K 13
E A ILI 12
F58 ISNPPASASL Zi 1
TabIeXXVlII-V1 0-H LA-B08-9mers-1 91 P4DI 28Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eigh
B08-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 9aino acids, and the end
position for each peptideis the start position plus
eight.
[Pos 12345678RLVVP [24
[D RLLRVMV
00
00O0
TableXXVIII-V1 1-HLA-B08-9mers-191 P4012B
Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 9amino adcids, and the endposition for each peptideis the start position plus
eight.
[PosI 123456789 score]1 []QARLRLRVM 191
D VMVPPLPSLI 11
TableXXVIII-V12-HLA-808-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Pos 123456789 score6 PEGCSYSTL 10
EPEGSYSTI 814 EEPEGCSYS D
TableXXVIII-V1 3-HLA-0B8-9mers-191P412B8
Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight
Pos 123456789 Iscore7 VLADPQEDSi 78 LADPQEDSG 4
SSQVTVDVLA 3
2 QVTVDVLAD 3
TableXXVIII-V14-HLA-B08-9mers-1 91P4012B
Each peptide is a portionof SEQ ID NO: 29; each
start position isspecified, the length of
peptide is 9 amino acids,and the end position foreach peptide is the start
position plus eight.
123456789 eSASLVAGTLI 17
[SNPPASASL 12
TableXXIX-V1-HLA-B1510-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight
Pos 123456789 score237 THILHVSFL 22
208 FHLVPSRSM 20259 WHIGREGAM 18374 YHRRKAQQM 17393 TRENSIRRL 17I 36 TSDVVTVVL 1611362 CLLWVWL II 1135 GSFQARLRL] 151
1308 EHSGIYVCH 151337 EDSGKQVDL 15100 QPPPPRNPL] 141106 NPLDGSVLL 14]
1138 QARLRLRVLI 14145 VLVPPLPSL 14245 LAEASVRGL 141277 PPSYNWTRL 14325 DSQVTVDVL[ 14
1501 IYINGRGHL 14I 8 EMWGPEAWL][ 13
26 TGRCPAGEL] 13
71 DAGEGAQEL[ 131
S74 EGAQELALL[ 1311142 RLRVLVPPL ][T1311511 PSLNPGPALI 13
1159 LEEGQGLTL 13197 KHSRSAAVT][ 131222TCWSHPGL][ 131292 GVRVDGDTL 13297 GDTLGFPPL [13351 VWVGVIAAL 13i356 IAALLFLL 13
1403 SHHTDPRSQ 131404 HHTDPRSQPI 131
14101 SQPEESVGL 1
TableXXIX-V1-HLA-B1510-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino adcids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
[419 RAEGHPDSL] 13[9 MWGPEAWLL 11 GPEAWLLLL
[73 GEGAQELALII1[821 LHSKYGLHV[88 LHVSPAYEG J[ 121los RNPLDGSVL [121[133 PAGSFQARL 121
[2131 SRSMNGQPLJ[ 1211382 MTQKYEEEL 12384 QKYEEELTL F 2]
14221 GHPDSLKDN 121452 REIETQTEL 12453 EIETQTELL 12484 HFVQENGTL 12
10 WGPEAWLLL 1112 PEAWLLLLL 1113 EAWLLLL 1142 WLGQDAKL 110 ALLHSKYGL 11
1157 PALEEGQGL j 1I1223 CWSHPGLL ii1226 SHPGLLQDQII ii[24J LHVSFLAEA (I1315 CHVSNEFSS Ii1352 WGVIAALL j[ III355 VIMLLFCL Fi0
1401 LHSHHTDPR ii1440 PEGRSYSTLj[11
[4831 NHFVQENGTII I
1232 QDQRITHIL 101
1236 ITHILHVSF 1250 VRGLEDQNLI 1011260 HIGREGAMLj
00
00
TableXXIX-V1-HLA- IB31510-9mers-1 91P41 281Each peptide Is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.
263 REGAMLK-CL 10281 NTL L 13631]LVVVM 14] QDG1QA 0ITableXXIX-V2-HLA-
B1510-9mers-191 P4012B 1
Each peptide is a portion'of SEQ I0 NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[TableXXIX-W-HLA-83151 0-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
eight
Po-sl F123456789- (cr
TableXXI-9HA8151 0-9mers-
191 P4D1 28Each peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of Peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight
Posi 123456789 scr
F74 H A F 16F46 YVAQ GLEL 14F11 LGLLKVRPL 13j32l IYFYFYFFLI[ 1258 SNPPASASL 12
F631 FSASLVAGT-L] 12
96 Q-CLLLG-LL 12
F- RRLLGI 1119 EEFPFL 1
F9j FL F 7LF 11F 21 L-I LVF LiiEq
F-1 KARFQC 1[ 0
U1 TNFFL1
TableXXiX-V1 0-1-LA-B1510-9mers-
191 P4D128Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 9amnino acids, and the endposition for each peptideis the start position plus
eightPos 123456789scrF-9 GTSDV-VTVV 6
EL SVVE GSW11
F-8 L4SVTVf~
ElRCAELEN PGEGS i~
AGLGSDV 1TabeXXIX-V1 1-H LA-
8151 0-9mers-191P4D1I28
Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideIs the start position plus
eight.Pos 1234 5 6789 Fso-~
D MPLS 14]jj1 LVMPL 1
TableXXIX-V1 2-HLA-81510-9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 25; each
start position isspecified, the length of
peptide is 9 amino acids,and the end position foreach peptide is the start
position plus eight.
TableXXIX-VI 3-H LA-6151 0-9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
IposI 124567-897D IQVTVDVLA0 3D VLADPQED)S
LA~ SQTVVL jj VDVLADPQ E
TableXXIX-V1 4-HLA-6151 0-9mers-191P4D128
Each peptide is a portionof SEQ ID NO: 29; each
00
00
start position isspecified, the length of
peptide is 9 amino acids,and the end position foreach pep de is the start
position plus eight.
[Pos 123456789 Iscore[3 SNPPASASL -71]
[SASLVAGTLI]
TabieXXX-V1 -HLA-B2705-Smers-19114D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide Is 9amino acids, and the end
position for each peptide isthe start position plus
eight.
Pos 123456789 score
393 TRENSIRRL 26
250VRGLEDNL 1251452REIETQTEL 22
135 GSFQARLRL 21213 SRSMNGQPL 20[77j RKAQQMTQK j19
42WLGQDAKL 189RVEQPPPPR 13
2621 GREGAMLKC Th1351] VVGVIAAL 111I376 1RRAQQMTQ1I 181j3991 RRLHSHHTD 11 11[g1 E2AWLLLLLLL IIi
17 LLLLASF 17]11051 RNPLDGSVL 11111421 RLRVLVPPL ]I17
201RSMAVTSEF2061 SEFHLVPSR] 171~
1294 RVDGDTLGF 11 1712971 GDTLGFPPL 11 17141911 RAEGHPDSL 1 1714981 GNGIYINGR I~iF41 TWLGQDAK 16
S451 GQDAKLPCF 16IF8 ALLHSKYGL 1
96GRVEQPPPP
106] NPLDGSVLL 111451 VLVPPLPSL 16I
RITHILHV16
TabieXXX-V1 -HLA-B2705-9mers-191P4D12B
Each peptide Is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the end
position for each peptide isthe start position plus
eight.
[Pos 123456789 [scorel[243 SFLAEASVRII 1[ 6
261 IGREGAMLK 196[293 VRVDGDTLG L16
301GFPPLTTEH [jjN337 EDSGKQVDL LJ
384 QKYEEELTLD
4761 EGIKAMNH [31477 GIKQAMNHF 71E HFVQENGTL ]I flii GPEAWLLLL 13
0LLLASFTGR 1[61 QVQAWA 31I7111 DAGEGAQEL IIis7 EGAQELALL 75 GAQELALLH 15
7 QELALLHSK 151 PLDGSVLLR 1-51 8PAGSFQARL 15
19 5ARLRLRVLV F 7141 LRLRVLVPP 15
1 KGTRSFI 15189 GTSSRSFK 1 151
227HPGLLQDQRi 15)
271THILHVSFL I123REGAMLKCL][ 151281TRLDGPLPSI f 71
1(31 LDPQEDSGK][ 7j1[365 VVVVLMSR][ 15j3921 LTRENSIRR4661 GRAEEEEDQ[ 15
[4921 LRAKPTGNG~J 15[j A IYINGRGHL ]ERIJ EMhrWGPEAWLL FI
11 EAWLLLLLL LZ1
TabIeXXX-V1 -HLA-B2705-9mers-191 P4D1 2B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide Is 9amino acids, and the end
position for each peptide isthe start position plus
eight.[Pos 123456789 [sce
27 GRCPAGELE[ 14j71GEGAQELAL
1041 PRNPLDGSV t 14[11411 LRNAVQADE [141201 ADEGEYECR 1 4
[13LRVLVPPLP[ 14[151 PSLNPGPAL[ 14157PALEEGQGL 14
[15 LEEGQGLTL[ 141861 EVKGTTSSR
11 SRSFKHSRS LiI199 SRSAAVTSE23 ITHILHVSF
127PPSYNWTRL .I1286 DGPLPSGVR 11292 IGVRVDGDTL J[ 14113131 YVCHVSNEF[14132311 SRDSQVTVD 143681 WLMSRYHR[14
F451 HRRKAQQET1378 KAQQMTQKY j[14
YEEELTLTR
[408 PRSQPEESV 1[410SQPEESVGL 711!
48 LRAEGHPDS 1440AEGHPDSLK 1
[4441 SYSTLTTVR 1114~1459) ELLSPGSGRI 141
lE1 MPLSLGAEM I13S121 PEAWLLLLL 11131S261 TGRCPAGEL 13~36 s(TsDVVL [1 131
S781 ELALLH SKY 1113]S861 YGLHVSPAY 13110 QPPPPRNPL Li112 EYECRVSTF L112 VSTFPAGSF 13
00
00
TabieXXX-V-HLA-B27059mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptide is
the start position pluseight.
F- 123456789 113 FPAGSFQAR(( 13
1138 QARLRLRVL 13202 AAVTSEFHL
208 FHLVPSRSM 13
129QPLTCWSH 113T WSHPGL 13
23 LQDQRII 13SGLEDQNLWH 1
SEGQPPPSY] 13PPPSYNWTR 1
P1T1 HVSNEFSSR 13WGVIAALL 13
I VGVIAALLF 133 IMLLFCLL (13
F WWLMSRY 1 38MTQKYEEEL
(391 TLTREN SIR i 3[~JRENSIRRLH ]I9
F44I0 sHHIT 131111 QPEESVGLR 13
481KDNSSOSVM [ThPEGRSYSTL][1
FVQENGTLR[ 13[JQENGTLRAK [71
[101 WGPEAWLLL 1247DAKLPCFYR
LYRGDGQ 126ARVOAGEGA 12
127 CRVSTFPAG 14 AGSFQARLR 1
192 SSRSFKHSR 122 PGQDQRI245LAEASVRGL 121
255DQNLWHiGR[259 WHIGREGAM 1Ej
HIGREGAML i
TabieXXX-V1-HLA-B2705-9mers-1191P4D12B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptide is
the start position pluseight
[os 123456789 score]281 NWTRLDGPL 1
308 EHSGIYVCH Ii3-25 DSQVVDVL fj1J55 VIMLLFCL 1
F33LLVWVLM 7iSVLMSRYHRR Li1
370LMSRYHRRK[32SRYHRRKAQ[ i
(396 NSIRRLHSH I435VMSEEPEGR
14511 VREIETQTE EI1471 EEDQDEGIK 2
474 QDEGIKQAM 7RAKPTGNGI 1
491AKPTGNGIY
TabieXXX-V2-HLA-B2705-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Ps123456789 soe1 GQDAKLPCLtIISDAKLPCLYR Li1F-11 16
[~JAKPCYRG E8
TableXXX-V7-HLA-B2705-9mers-191P4D12B
Each peptide Is a portionof SEQ ID NO: 15; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position pius
eight.
[PoF 123456789 s
D PRSQSEEPE 1
L SQSEEPEGR 12
RSSEEPEG
TabieXXX-V9-HLA-B2705-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position pius
eight.
Pos 123456789 sco
2 RRELLAGIL 27
S931 FRFICLLLI 241S1 1I LRITFNFFL 2120ERFGF2[I MRRELLAGI 2
77ACFESFTKR 287KKLKKAFRF 2
RELLAGILL 18SELLAGILLR 18SKRKKKLKKA 18
8RKKKLKKAF 18
91 KAFRFIQCL 18
LIi AGILLRITF 17Z23 LPFPLWVFF II1783TKRKKKLKK] 17199LLLGLLKVR 1 171
[I ILLRITFNF 1 161[0ESFTKRKKK] ]j666KKKLKKAFR][ j.6l[11ITFNFFLFF jI
SHYVAQAGL 81 SFTKRKKKL 15197 QCLLLGLLK
101 LGLLVRPLI IGVNSCDCERI 151
121 RGYFQGFM
00
00
TableXXX-V9-HLA-82705-9mers-
191 P4D1 28Each peptide is a portionof SEQ ID NO: 19; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.1Pos1 123456789 Iscore
F12 RlTFN FFL-F 141 5 F NF FL FF F-L 1
F 1 91 L FF FLP FPL 14F22 FLFPLF 1428 F FI-lY FY 1432 IYFYFY-FFLI 14
F37 YFFLEMES 1446 YVQGLL1
F58 S NPPA-SASL 14EF63 SALAT 1492AFR FI QCHLL 1 49-61 IQC LL LGL DF1 4
I71 LLGILR 13[1-71 FFF F FL P F 1327 LWFIF 17[31LFIYFYfYF 13j FFYFFLEM 13F47VAQAGLELL 166LVGTLVH 1376E9 EST 13,
F79 FESTKKK 13
F9 5 FiQCLF 13]122GYQGFM 1
[TableXXX-V1 1-HLA-82705-9mers-191 P4D12B
Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[os 1 23-456789 IsEl5 RLRVMVP-PLI 16
EFVM-VPPLP-SL 1
DLIRRVMP 14E9 LMPL7P 13LE QALLV 11DLRLRVMV
TabIeXXX-V1 2-HLA-1B2705-9mers-
191 P4D12BEach peptide is a portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptidleis the start position plus
eight.
os 124578 score:D EG6 YTL 1::SEEPEGCSY1
281 GCSYSTLTT] ZI6:91 =S6T~
TableXXX-VI 3-HIA-B2705-9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 27; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[gs 1l23456 78 9-1jjEAPFQEDSGK 16
TableXXX-V14-HLA-B32705-9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 29; eachstart position is specified,the length of peptidle is 9amino acids, and the endposition for each peptideis the start position plus
eight.[Posij 123456789 Esog
D~ SALVGT 14
D GSSN PPASAE:
(TaIeXXXI-V1-HLA-B32709-9mers-1 911P40128IEach peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptidleis the start position plus
eight.Po0s 1234567891scr
139 ARRLRVL 22
250 1VRGLEDQNL I1 211F39TRENSIRRL[212SRSMNGQPL
2341 QRITHILHV
104 PRNPLDGSV 19408] PRSQPEESV 18135 GSFQARLRLF 17142 RLRVLVPPL 16287 =GPLPSGVRV F16399 RRLHSHHFD 1
00
00
TableXXXI-VI-HLA-B2709-9mers-191P4DI2B1Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each pepbdeis the start position plus
eight
s 123456789se9 GRVEQPPPP 1
F RNPLDGSVL i1f~jGDTLGFPPL 1 5
RSYSTLTV I4 REIETQTEL 1
11 GPEAWLLL 1[jjAWLLLLLLL1ZIGRCPAGELE[ 14f GEGAQELAL [4j ALLHSKYGL FT1'22GREGAMLKC 14'23REGAMLKCL [14
1GVRVGDTL 14292 RVDGDTLGF 14
lICLLVVVVL It4lZ1RRKAQQMTQI i1 RAEGH1POSL11J
SGRSYSTLTT I 4GELETSDW lii
[LETSDVTV ]l13[i NPLDGSVLL11 CRVSTFPAG .i
941 LRLRVLVPP h(1 VLVPPLPSL 1il1f53 PSLNPGPAL [13
1 TRLDGPLPS If13324 1RDSQVTVDV [Th
I3QKYEEELTL 1T46GRAEEEEDQ 13
SRAKPTGNGI [J*1fJMWGPEAWLL( i21
w VVLGQAKLII21[lGQDAKLPCF 1126ARVDAGEGAI[12
Ii1i1 GSVLLRNAV 1121 PAGSFQARL EZ214 LRVLVPPLP [12
TableXXXI-HLA-B2709-9mers-1 91 P40128
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[PosI 123456789 i17 PALEEGQGLI[ 121
1 AEGSPAPSV 12200 RSAAVTSEF
20 AVTSEFHL F12 TCWSHPGL]22CSHPGLL 2237THILHVSFL
fJSRDSQVTVD[WGVIAALL 712 ALLFCLLV 1
358ALLFCLLVV 121361 FCLLFVVV 1
372SRYHRRKAQ 1
D501 IYINGRGHL 11IIIN MPLSLGAEM E l
1WGPEAWLLL 11
12 PEAWLLLLL 1
13 EAWLLLLLL 112TGRCPAGEL 11T36TSDVVTVVL 1
711 DAGEGAQEL 1]]10 QPPPPRNPL [j1115 LEEGQGLTL If1i18 KGTTSSRSF] iii
191SRSFKHSRS [jj19SRSAAVTSE jj123AVTSEFHLV 11
28PGLLQDQRI 11231QDQRITHIL 1jj
25LAEASVRGL II1M27PPSYNWTRL j-121NWTRLDGPLI 111123VRVDGDTLG II1i
SDSQVTVDVL l1l37EDSGKQ VOL 11 l
VDLVSASW] illSDLVSASWV IIIvi
TableXXXI-V1-HLA-82709-9mers-1 91 P40128
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos2456789 o
348 ASWVVGVI 11
351 WVGVIAAI. 11SVGVIMALLF ill
35 IAALLFCLL 1 j359LLFCLLV 11
1LLW VLM
38IRRLHSHHT ILAI4101 SQPEESVGL li1i1181 LRAEGHPDS 11 I
148KDNSSCSVM IIl STLTTVREI lil47GIKQAMNHF 114 HFVQENGTL IJIP42LRAKPTGNG 1145KPTGNGIYI 11
17 LLLLASF
I57 1DSGEQVGQVI 7 EGAQLALLI 101
14 LRNAVQADE
1129VSTFPAGSF L41I131FQARLRLRV] 10138QARLRLRVL] 11[81FHLVPSRSM F
ITHILHVSF 1
42 VSFLAEASV 1
26 -IGREGAML [45EFSSRDSQV 1l
SLVSASVVW 1U11 SAS D§GV j1371 VIAALLFCL Ii Th6
30LFLLW V J QYHRRKAQQM
135 RRKAQQMT ~iMTQKYEEEL
30LTLTRENSI 40PEGRSYSTL
00
TableXXXI-V1 -HLA-B2709-9mers-1 91 P4D1 28Each peptide is a portionof SEQ ID NO: 3; each
start position Is specified,the length of peptide Is 9amino acids, and the endposition for each peptideIs the start position plus
eight7Pos F 1234-56-789-[4511 VREI1ETQTE l453EIETQTELLI 10
TableXXXl-V2-HLA-B2709-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 5; each
start position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eightPosl 13579
(TableXXXI-V7-HLA-B2709-9mers-
191P4012BEach peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.
FE 6PRSQsE E 10~
TableXXXI-V9-HLA-82709-9mers-1911P4D1283
Each peptide is a portionof SEQ 10 NO: 19; eachstart position is specified,the length of peptide is 9aino acids, and the end
position for each peptideis the start position plus
eight.
IPos 124578 ore
TabIeXXXI-V9-H-LA-B2709-9mers-19 lP4D12B
Each peptide Is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
FPo 1-23-456789 sor
DIRRELLAGIL ,rF93 FRFIQCLLLI23
01MRRELLAGII1106 VPQQV1
[871KKLKKAFRF L91 KAFRFIQCLI 14
[1211RGYFQGIFMj 1-4
E1 RITFNFFLF 13
232PPVF
[jjFNFFLFFFL1] hLFF1FP [2
84 RKKLKA 12
TableXXXI-V1O-HLA-B2709-9mers-
191 P4D12BEach peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eighL
Posl 1123456 789 (cr
1 GRPAGLG146 GELGTsDW~ 1-i38 LGSDT 1 3
TableXXXI-VIO-HLA-B2709-9mers-19IP4019R
Each peptide Is a portionof SEQ ID NO: 21; eachstart position Is specified,the length of peptide Is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[Pos 123456789DGT-SDVVTVVr2
DAGELGTsDV E:j
TableXXXI-VII1-HLA-832709-9mers-
191 P401 28Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 9
Lamino acids, and the end
is the start position pluseight.
F12] RRRM 22
114] RL V V P 163F-8] VVP 13
!I1 MVP E9L1,DRVVPPD 1ITableXXXI-V12-HLA-
B32709-9mers-191P4D128
Each peptide is a portioniof SEQ ID NO: 25; each
start position isspecified, the length of
peptide is 9amino acids,and the end position foreach peptide is the start
position plus eight.
[Pos 123456789
EqCSYSTLTTV F11
TableXXXI-V1 3-lILA-1B2709-9mers-191P4012B J
00
00
Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 score
2 QVTVDVLAD 4
VDVLADPQE
6 DVLADPQED 31l] SQVTVDVLA 2
F-3J VTVDVLADP 1
4 TVDVLADPQj 18 LADPQEDSGI 19 SIjADPQEDSGKJ 1
TableXXXI-V1 4-HLA-B2709-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 29; each
start position isspecified, the length of
peptide is 9 amino acids,and the end position foreach peptide is the start
position plus eightPos 123456789 score
3I SNPPASASL 18 SASLVAGTL ii4 NPPASASL D9TableXXXIl-V1-HLA-
B4402-9mers-191P4Dl2B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the end
position for each peptide isthe start position plus
eight.
Pos 123456789 score7 AEMWGPEAW 27
4371 SEEPEGRSYI 2512 PEAWLLLLL Il2359 GEQVGQVAW[ 2373 GEGAQELAL 23159 LEEGQGLTL 23263 REGAMLKCL 23
452 REIETQTEL 23
ITableXXXII-V1-HLA-4402-9mers-191P4D12BEach peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the end
position for each peptide isthe start position plus
eight.Pos 123456789 score
272 SEGQPPPSY 22
440 PEGRSYSTL 22
g LEDQNLWHI 21470 EEEDQDEGI 2114 AWLLLLLLL 18
413 EESVGLRAE 17
13 EAWLLLLLL 16
100 QPPPPRNPL 16351 VVVGVIAAL 16388 EELTLTREN 16
9 MWGPEAWLL 15106 NPLDGSVLL 15124 EYECRVSTF 15138 QARLRLRVL 15237 THILHVSFL 5i246 AEASVRGLE 15
337 EDSGKQVDL 15
393 TRENSIRRL 15453 EIETQTELL 5487 QENGTLRAK 15494 AKPTGNGIY 15
1501 IYINGRGHL 1536 TSDVVTVVL 14
74 EGAQELALL 14]78 ELALLHSKY 480 ALLHSKYGL 1498 VEQPPPPRN 14
135 GSFQARLRL 14
145 VLVPPLPSL 14151 PSLNPGPAL 141
160 EEGQGLTLA 14173 AEGSPAPSV 14202 AAVTSEFHL 14
232 QDQRITHIL 14274 GQPPPSYNW 14294 RVDGDTLGF 14
TableXXXII-V1-HLA-B4402-9mers-1 91 P4D1 2B
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptide is
the start position pluseight.
Pos 123456789
307 TEHSGIYVC [14
319 NEFSSRDSQ 14362 CLLVWVVVL 1387 EEELTLTRE 1394 RENSIRRLH 14
420 AEGHPDSLK 1438 EEPEGRSYS 14
PLSLGAEMW 13
8EMWGPEAWL 1310 WGPEAWLLL 13
11 GPEAWLLLL 1317 LLLLLLASF 13
LETSDVVTV 1342 WLGQDAKL 1377 QELALLHSK 1386 YGLHVSPAY 13
105 RNPLDGSVL 13117 AVQADEGEY 1375 GSPAPSVTW 13
188 KGTTSSRSF 13213 SRSMNGQPL 13231 LQDQRITHI 13251 RGLEDQNLW 13348 ASWVVGVI 1335 WGVIAALL 13
353 VGVIAALLF 13356 IAALLFCLL 13378KAQQMTQKY 13
38 YEEELTLTR 13
410 SQPEESVGL 13446 STLTVREl 13458 TELLSPGSG 13468AEEEEDQDE 13471 EEDQDEGIK 13
TableXXXII-V2-HLA-B4402-9mers-191P4D12B
00
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.pos] F 2-345678-9
1 GQ DA KLP CL1 Li?2 Q DA K-LPC LY 12]4F PCLYRG L
FTTab -eXXXII-V9- HLA-FB4402-9mers-
191P4D12BEach peptide Is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peplide is 9amino acids, and the endposition for each peptidleis the start position plus
eight.
Pos 1 123456789 scoeF J I LL R ITFNF 14j4MI FLRIT FN FFLD1 221 FPFLW 14J
RKKKL-KK-AF 1f93 FIQL 1 141 01 L G L LK-VRPL 14~
F 15 FNFFLFFFL 13F17 FFLFFFLPF 1
19 LFFLFP 1271 LWVFFIYFY 1328 FFIFYF 13291 VFFIYFYFY 13
FFIYFYFYF F1-3
F79FEFTRK 1387 KLKAFR 13
961 IQCLLLGLL 1311 NSCDCERG-YF13
11-6 SCCEGY 13
126 GIMQAAP 132
2FPLWFFIY 1
F47VAQAGLELL 1
5FICLLLG 12
[14 TFNFFLFFF r71124F PFPLVVFFII 1iiL31 FIYFYFYFF F1138 LMESHY 11E44 ISHYVAGL Dlj
TableXXXI I-V9-H LA-B34402-9mers-191P4D12B
Each peptidle is a portionIof SEQ ID NO: 19; eachstart position is specified,the length of pepticde Is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos 123456789 scr
461 Y VAQAGLEL D =1l774 HHACEF 11
88 KLKAR I
TableXXXII-V9-HLA-B34402-9mers-
191 P4D12BEach peptidle is a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptidle is 9amino acids, and the endposition for each peptidleIs the start position plus
eight.
FPo sI 2468
12 ELA IL 2F GILRTF2
11-9 CEG F 20F23 LFLF
F91 KAR F 17]F13IFFLF 1
F5-8]PASS 15F63 FLV1T 15I 811 FKKK s
92j AFRFqc-L-L L-:15j
TabIeXXXII-V1 1.HLA-B34402-Smers-191P4D12B
Each peptide Is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide Is 9aino acIds, and the end
position for each peptideis the start position plus
eight.Pos 123456789 sore
LD] MvPPLP~sLNF-
TableXXXII-V1 2-H LA-B4402-9mers-191P4Dl2B-
00
00
Each peptide is a portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
Posi 123456789 Iscore
73 SEEPEGCSY 2476 PEGCSYSTL
:[EEPEGCSYS 13
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.[pos( 123456789 [score
71] DAGEGAQEL 2245 LAEASVRGL][-23
1287 GPLPSGVRV [23i34ZI SASVVVGV Lz 2l[493 RKPTGNGI
KPTGNGIYI
106 NPLDGSVLL
QA2LRLRVL L 357 MLLFCLLV 1911571 PALEEGQGLI jj1S11I GPEAWLLLL I i9F13 EAWLLLLLL F 1912021VTSEFH L
228 PGLLQDQRI(3561 IAALLFCLL Lf1
110 QPPPPRNPL 181
(27NGQPLTCW[ 18(27PPSYNWTRLI Lip'II1DPQEDSGKQ I 8
345 LVSASV 18
419 RAEGHPDSL 1
ETSDVVTW F179PAYEGRVEQ IZ Z7
13 PAGSFQARL fjffASVVWGVI4RSYSTLTrV46STLTTVREI
10 WGPEAWLLL
3GELETSDWI 6
[121 DEEYCV i[21911 QPLTCWS1-I]16
129LPSGVRVDG][i6(135DSQVTVDVL][16[1VDLVSASW][161 DLVSASVW] 1639ILLCLWV J76T
TableXXXIIII-V1-LA-B5101-9mers-191P4D1
Each peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[PosI 123456789 scre]
36 0 LFCLLWW 13621 CLLVWL 61(3901 LTLTRENSI D 16
LETSDVTV (65 VAWARVDAG[ 151F79 LALHSKYG 1 151[148 PPLPSLNPG
12311 LQDQRITHI] 1511276 1PPPSYNWTR][ i5338 DSGKQVDLV[
13581 ALLFCLLW 151lI1QKYEEELTh f's
(407 DPRSQPEES][ 1411 IQPEESVGLR1[ 22LASFTGRCP
26TGRCPAGEL j 29 PAGELETS31 AGEETSDV4
47 DAKLPCFYR 14
75~ GAQELALLH 1 141
[2LHSKYGLHV j( 141
1721 TAEGSPAPS 1
11761 SPAPSVTWDI 14253LEDQNLWHI
286 DGPLPSGVR 1((FPPLTTEHS FT4jPPLTTEHSG [7iMPLSLGAEM 133PAGELETSD 1113/3TSDVVTL 13
5LPCFYRGDSi 131f31 EGAQELALLI 131
9VSPAYEGRV1 131302 PPPRNPLDG 13
[1471_VPPLPSLNP L1
TableXXXII-V14-HLA-84402-9mers-191P4D12B
Each peptide Is a portionof SEQ ID NO: 29; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eightIsi123456789scrSSNPPASASL 15
LI 81SASLVAGTL 15
,E21 SNPPASASI Li7
-TableXXXIIII-V-HLA-LB5101-9mers-1 91P4D1 2B
00
00
TableXXXIlII-V1 -H LA-85101 -9mers-1 91 P4D1 28
of SEQ ID NO: 3; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position pius
eight.[Pos[123456789 sor1501 LPSLNPGPA -1-3'177 PAPSVTWD-T]13178APVTT 13211 VPSRSMNGQ 1275 QPPPSYNWT13j300 LgFPPLTTE [13322 SRDSQvTV 1
37 KQM TQKY 14 78 1KQ A MN HF V 13r42 WLGQDAKL 12
~YRGDSGEQvI 12F86 YGHVP 12101] PPPPRNPLD 12109 DGSVLRNA] 12119 QADEG EYEC 12154 NPGPALEEG 121i59 LEEGQGLTL F12167 LAASCTAEG 12
[168 AASCTAEGS 12234 QRITHILHV F122-65 ALK C LS E 12309 HSGIYVCHV 12I339 SGKQVDLVS 1246-7AEEEQD12480 _QAMNH FVQE 121
,F 1LGAEMWGP 1158 SGEQVGQVA 1
F67 WARVD AGEG 11103 PP RNPLLDGS 1116 NAVQADEGE 11137 FQ ARLRLR 1139 ARLRLRVLVF11201 SAAVTSEFH 11216 MNGQPLTCV F11247l FEASVRGLED 1 1111
1 TableXXXIlIII-V1 -HLA-B5101-9mers-191 P4DI2BjEach peptide is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide Is 9amino adds, and the endposition for each peptideis the start position pius
eight9os 123456789 score285 LDGPLPSGV 11296 DGDGpp 1304 PLTTE HSGI 13-06 TTEHSGIYV- 11310 SGIYVC HVS 1324 RS VV335PQDSKQ 1
35 1 W GIAL3931 TRENSIRRL I1427 LDSCV1
470 EEEQDEGi11502 YINGRHV 1
TableXXXIIII-W7-HLA-85101 -9mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position pius
eight.Pos3456789
f ableXXXIII-V9-HLA 85101-9ers-191P4D128
Each peptide Is. a portionof SEQ ID NO: 19; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.Pos1E 123456789 score
59 NPPASASLV
6SASLVAGTL E2101l LGLLKVRPL47 VA(aGlL
9KAFRFIQCLI JLLAGILLRI E
21 FFPFPW iA23A LPFPLWVflEF25 FPLWFFIY 16
24PFPLF VFIF10-O7 RPLQHQGVN jj~
fIVRRELLAGI j:LA-GNLLRIT j
60 PPSALVA fiji461 PASASLVAG 14j67 VAGTLSVHHEE98 CLLLGLLK 7
LI1CERGYFQGIfl 139QAGLELLGS F126CACFESFTK 12~
20O FFFLPFPLVE:f50O AGLELLGSS fnj]
121 RGYFQGIFM
Tab~eXXXIIII-W7-HIA-B5101-9mers-
191 P4D12BEach peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.P34679 ce
00
00
TableXXXIIII-V1O-HLA-851 O1-9mers-191P4D12B
Each peptide is a portionof SEQ ID NO; 21; eachstart position Is specified,the length of peptide is 9amino acids, and the endposition for each peptideis the start position plus
eight.
[PLGTsDVVT 21J-678fGTDVV 217
79LGSD 1EFPAELTS 1
1IAGL3]D 1F1JPAE TSL9
TableXXXIIII-V1 3-H LA-85101 -9mers-
191 P40128Each peptide is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
eightPos 123456789 scr::]IADDS-G
ADQE ~j
213 VTVDL=5
TableXXXIV-V1-HLA-Al l0mers-191P4D128
Each peptlde is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.Pos]1234567890 ~ER
36 KS D-VVT VL G][771 QELALLHSKY[ I7
3061 TTEHSGlYVC[ 17!377 RKEQ2KY411]QESGR 74 f DAPGSY 7
304 PTESI 632 VDQDGK[1365VVLSR]385KYELLT L__.4571 ILSGS 6
85 LH PAI S[116NVAEE T[251 TEFLVSR
LTableXXXI V.V2-H LA-Al-]l0mers-191P4D12Bj
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is amino acids, and the endposition for each peptide isthe start position plus nine.
[P0s 123456789l[IJ GQDAKLPCRYL
[TableXXXI V-W-H LA-Al l0mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is amino acids, and the end
position for each peptide isthe start position plus nine.[Posl 1234567890 I~eR[~DPRQE
TableXXXIIII-VI 2-HLA-851 01-9mers-191P4D128
Each peptide Isea portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide is 9amino acids, and the endposition for each peptideIs the start position plus
I eightPos [123456789scr
F~ CSSLT 17
F EPEGSYST=1PE GCSST .8
TableXXIV-V1 -HLA-A1 -1l0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
F1RS] 124680 sc-ore271 LZEGQPPPSY -3
45GDAKLPCFYLZ405 HDPRS QPEE F-2493 RKPTGNGIY [-20158 kLEEGQGLTL i
11GPEAW LLLLL F-172 1AGE GAQELAL [j8
E10 PLDGSVLLRN F-1
I3iE!ETQTELLS L1Z8
00
00
TableXXXIV-V9-H 'AAl l0mers-191P4D18
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide Isthe start position plus nine.Pos 1234567890 scorr281 W FFIYFYFY [F17924 1PFPLW\FFIY1. 8
RE2 A ILL] 1[37_1YFFLEMESHY][ 77[_26 PLV F -YF 1114 1\VNSCDCERGY 16~6-82 FTKRKKKLKKj 15
F391 FLEMESHjYVA IF13116]jSCDCERGYFQ 1118DCRYGI1
331 YFYFYFFLEM I 11[41 EMEHYAQ 1]
551F 1z SNP1SS
I9F RFIQLLL 102
96 FIQC LLLGK [j
TabIeXX(XIV-V1 0-H LA-A1-10mers-191p04D12B
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 10ami no acids, and the end
position for each peptde Ithe start position plus nine.P-osli 12345 67890 lscorel
Each peptide is a portionof SEQ ID NO: 23; eachstart position Is specified,the length of peptide is
aino acids, and the endposition for each peptideIs the start position pius
nine.fEos 1234567890 scre
F-1 61 MPEP I=i
TabIeX)(XIV-V1 2-H LA-Al l0mers-191 P401 28
Each peptide is a portion ofSEQ ID NO: 25; each startposition Is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide Isthe start position pus nine.
E9os 124680score[D MSEEIPEGS 19f
TableXXXIV-V1 3-H LA-Al-It 0mers-191P34D128Each peptide is a portionof SEQ ID NO: 27; eachstart position Is specified,the length of peptide is 10amino acids, and the end
position for each peptide isthe start position plus nine,
IEos 1123567890 scorefD LADPQEDSGK [74]D1 TXVDVLADPQE F10DNSV=TVDV=LAD
21VVDVLADPIQ 7
rTabIeXIV-V1 4-H LA-Al-j10mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 29; eachstart position Is specified,the length of peptide is 10amino acids, and the endposition for each peptideis the start position pius
nine.Po1346790sc r
SLVGTLV 1
[DNASAS-LVA1121
[TableXX(XV-V1 -HLA-A0201-10mers-191 P4D1 2BEach peptide is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
E~ol 1234567890 244 IFLAEASVRGL 3-58 IALLFCLLVVV [2913591 _LLFCLLVVVV][ 29215 SMNGQPLTCV 27158 IALEEGQGLTLI 26
F30] LLQDQRIT-HI F3-44 DLVSASVWVV 1125133]1 ELETSDVVTV239 ILHVSFLAEA 24
426 SLK N T 1C 24
1B LLHSKYGLHv][ 23NJ~ RVLVPPLPSL Li f252 GLEDQNLWHI][ z
12841 RLDGP LPSGV if23!357 AALLFCLLW 112316g LLLLLLLASF 1122350 WVGVM I_362CLVVVVLM Dj22!392 LTRENSIRL f]22l3Ij GVMLLFCL7 ij3551 VIAA4LFCLL j[ 21179J LALLHSjKYGL F1 27
1236 THL'IF F3476 VSASWWGV F50oof GIYINGRGHL 2!1411 LRLRVLVPPL 1912351 WVGAALL -jj9~
1356 ILFCLLV JI 1ii!9f36 FCLLYVL7h3811 QMTQKYEEE-L 19Th
147 GIKQAMNH7FV F1Th![1 EMWGP AWLL 11815 WLLLL A 1
10s-19=T1428f
00
00
STableXXXV-V1-HLA-A0201 -1 Omers-1 91 P4131 2BEach peptide is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
[Pos 1234567890 ts.cor[1-71 LLLLL.LASFT [iI-1-8
[i121 VLLRNA6VQ FT181152 SLNPGPALEE [181[121 TAEGSPIAPSV [[181201 [SAAVTSEFLJ[I-221 LTCWVSHPGL]I 181[2-4J9SVRGLEDQNL F -78j
F ]SASVVVW:GVl F 8[36 0_ LF C LL WV F1814181 LAGP J1811 WGPEA FLL-17111 LEAWLLLLLLL F 171 25 FTGRCPAGEL][-1-71
GDSG EVGQV[ F1 7]VDAGE GAQEL] 17
S73 GEGAQELALL Jr 177Fj-3 FPAGSfQARL J[ 71137 FQARLRLRVL]-7
1202 MTEFHLVJ1 177~2411 HVSFLAEASV]IIIP305 LTTEHSGYV ILPI
F3631 LLWVVV'LMS ILII713891I. ELTLTflENSI ]lZ 118 LLLLLASFTG 16 A~F61 QVGQVAWARVI 161l
[89 IHVSPAYEGRV II[1381 QARLRLRVLVj Il-1401 RLRLRVLVPPI 16
11641 GLTLMSCTA J1r.iil-11-66 TLAASCTAEG ]161[257 NLWHIGREG j[ 1611259 IWHIGR EGAML l[ 16[341 KQVDLVSASV jF- i1370 1LMSRYHRRKA IiI1441 GRSYSLTTV IF 176
7 J AEMWGPEAWL[ ]5iZii GPEAWLLLL ]Ej
TabieXXXV-V1 -HLA-A001 -lomers-1911P4DI2B
Each peptide Is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide Isthe start position plus nine.
[Pos 1234567890 1s-r[191 LLLLASFTGR 1
[34] LETSDYWVTVV LA1721 AGEGA ELAL71181 vTwDTEVKGT E2291 GLLQDqRITH j:j262 GREGAML-KCLF17299 TLGFPELTTE JD321 FSSRDSQVTV] 75343 VDVAV I 15
1349SVWVGVIAA] 15~-~397 SIRRL-HSHHT] 175
[409 RSQPEESVGL I(1511445 YSTLTTVREIr71447 TLTTV(REIET 1 7h460LLSPGSGRAE flF1-55011 IYINGRGH7LVF 7
F-12] PEAWL LLLL.r 74LLLASFTGRCELJ5
f[J LLASFTGRCP] 74jETSDVVWL] 14
F80 ALLHSKYGLH F14[871 GLHVSBAYEG 7i i[i-07] PLDGSVLLRN I[14[iii1]1 SVLLR NAVQA][ 141113 LLRNAVQADE]L4FI1501 LPSLNPGPAL] 14~1156 IGPALEEGQG-L][ 141
118APSVTWOTEV][14195 SFKHSRSAAV][ 14f233 QRITHLHV ][jr1j~ SGVRVDGDTL [T1412981 DTLGFEPLTTJ 173-11 GIYVCHVSE]D323 SRDSQVTVDV 14324RDSQVIVDVL 71
13321VLDPQESGK] F1411342QVLVAS JD142 EIE TTELL II 141
TableXXXV-V1-HLA-[A0201-l0mers-1 91P4D)12B3Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine,
[P0s 1234567890 e
[47j LRAKPTGNG11I 4I
TableXXXV-V2-HLA-1A0201-l0mers-
191P4D12BjEach peptide is a portion ofSEQ 10 NO: 5; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus ninel
[10 LYRGDSGEQ4II14CLYRG6DS GEQ D
,D1~ KLPCLYRG-DS-F 711
TabieXXXV-W-HLA-A0201-1 Omers-
191P4D128Each peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is amino acids, and the end
position for each peptide isthe start position pus nine.[PosI_1245780 R~
TableXXXV-V9-HLA-[A0201-l Omers-1 91 P4D1 281Each peptide is a portion ofSEQ ID NO: 19; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.j
[PosI 124567890 e[1001 LLLVRLF -2]E J LLAGILLRIT JA~
00
E
0
0
O
(O
O0
TableXXXV-V9-HLA-A0201-10mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
Posl 1234567890 Iscor
A0201-10mers-191P4D12B
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is amino acids, and the end
position for each peptide isthe start position plus nine.Pos 1234567890 so
8]ELGTSDVVTV
GTSDWTVWL 18-ILGTSDVVTrVV
IPAGELGTSDV 13
TableXXXV-V12-HLA-A0201-10mers-
191P4D12B
Each peptide is a portion ofSEQ ID NO: 25; each startposition is specified, the
STableXXXVI-V1-HLA-A0203-10mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is
amino adds, and the endposition for each peptide isthe start position plus nine.
00
00
IPOSI1 1234579 score1160 IEEGQGLTLA[ 19
[-R4 RSHSRS F1 9349 SVWVGVIAA 19F59 1GEQvGQW F18
12391 IjLHVS 7pEA 18..J.1671 EGQGLTLAAS [ThIj19511 SKHSRSMAV F 177350 IWVWGVIMAL 11171
LGAEMWGPEA1j 1-0111 AW1L.LLI-LA j]iof-221 LASFIGROPA I 921391 'VTVVLGQDAJF 10
I 571 DSGEQV GQVA F .1I 63 GVAWARV0Al 10!
F67 WAV6RVDA GEGAf10711 DAGEGAELA]j. 10
F-84] SKYGLHVSPA] I 101-0811 LDGSVRN Fi 10F1111 SVLLRN8VQA] F10F125 YECRVS TFPA]. 10FL301 STFPAGSFQAJ 110JF49]1 PLPSLNPGPA]. 10RLs9] LEEGQGLTLI 10FW641 GLTLAA SCTAJ 7f161F1691 ASCTAEgSPA.1 ][i0F11931 SRSFKHSRSA riol2-371 TH-IiH-vSFA 170
F257 NLWHIGREGA ][iIq339 SGKQ VODLVSA 170
[3-J8]ASVWVGVIA][ 103701 LMSRYHRRKA][ ]iO
F4-] QfPEESVGLRA[ -101ELLSPG SGRA] ][10
4721 EDQOEGIKQAj I1- 01[4851 FYIQENGIRA ]j70
G AEMWGJPEA F91
F-2]ASFTGRCPAG JF2lVTVVLGDAK I[ 21
F58 SGEQvG.QvA~ 219QVAWVAGE
681 ARvDAGEGAi 9F7-2] AGEGAQELAL 91J
KYGLHVSPAY 119
TableXXXVI-VI-HLA-1A0203-1 Omers.1 91 P4DI 2BEach peptide is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide isthe start position plus nine,,
[PosI1 1234567890 j[score]1109 DGSVLLRNAV 112 V LLRNLV6QAD ][79176 E~jRVSTFPAGLi131 jTFPAGSFQAR 9I~
[1501 LPSLNPgPAL LI^ 11651 LTLAASCTAE]FEI1170 SCTAEGSPAP [I-12381 H!LH-VSFLAE [21240 LHVSFL.EAS FE~q125 LWHIGREGA-M [27340 GpKQvDLSA~s][91-g371MSRYHRRKA L79412 PEESVGLRAEF 714-60 LLSPGSGR-AEIF79473 DQDEGIQM 1486 VQENGTRA ]7 9
TableXXXVI-V2-HLA-A0203-1 Omers-
191 P4012BEach pepbde is a portionof SEQ ID NO: 5; each
start position Is specified,the length of peptide Is 10amino acids, and the endposition for each peptideis the start position plus
nine.PoIs 13579 cr
1101E DiTL
FEach peptide is a portion ofSEQ ID NO: 19; each start
position Is specified, thele ngth of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.Po 1234567890123 YFGFA 19
41l EMS-VQ 18
124 F I1~M 17
59 NPAASV 681ATSHC 831 TKKKKK 0
12 YQIMAL~40LEEHVQ19
MEHYAG[9!5=4 LLSNPA [9
=5 GSNPAA 60l PPSSLA Z69GTSHCC[
84 KRKKLKA
TableXXXVI-V1il-HLA-A0203-1 Omers-
191 P40128
Pos 1235679NoResultsFound. -11
TableXXXVI-VI 2-H LA-A0203-1 Omers-
191P4D12B[PosI 124679 Fscoi
TableXXXVI-V1 3-HLA-1
191P4D12B JEach peptde is a portionof SEQ ID NO: 27; eachstart position is specified,the length of peptide is
TbeXX-V9-HLA-1A0203-lOmers-I
19=,=j 4D~12B=~J
00
00
TabIeXXXVI.V1 4-H LA-A0203-1 Omers-
191 P41I2BEach pepfide is a portionof SEQ ID NO: 29; each
start position is specified,the length of peptide is 10amino acids, and the endposition for each peptide isthe start position plus nine.
rPo0s 12356790 e
G S SNPPASAPPASASLV
E]SNPAAS
TableXXXVII-VI HLA-A03-lomers-191 P4D 12B
Each peptide is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide Is
amino acids, and the end
position for each peptide isthe start position plus nine.Pos 13457890 ]]score152 LSL NPGPALEE] 203 AVTSEFHLVP 284 RLDGPLPSGV]1_20345 LVSASVVVG
3521 wGVMLLFf21369 VLMSRYHRR1~ 201
17 LLLLLLASFT 1191135 VYVIWRY 191
4 1-9 R HP LK T19F19 ILLLASFTGR 118
117AVADEEY][181
1442] PLSL 1
[3591 LLFCLLVV F 18]400 RLHSHHTDPR [18450 TVREIETQTE 1181
WLLLLLLLAS 1718 [LLLLLAS FTG F1742 VVLGQDAKLP 1
Bj~ LLNAVADE iZ145 VLVPLPSLN J-7
jjgKGTSSRSFK F 7j17KHSRSMAVTS 171
F24 RVDGDTLGFPF 173PLTTEHSGIY F 77
376 LVVVVVLMSRI 17391 TLTRENSIRR 17443 RSYSLTTVIR F17460 LLSPGSGRAE Il1f[ QEALHS 16g LLHSKY GLHV -16
11 VLLRNAVQAD 16F1-23 GEYERVSTFF 17[C6jLV PPPSLN P 1 61E SUAEg
00
00
TabIeXXXVII-V2-HLA-A03-l0mers-1 91P4D12
Each peptide is a portion ofSEQ ID NO: 5; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
P0s 12345678907 [scoree
CLYRGGEQI 181SKLECL~GDS 11
LYRGEQVII1CZ QDAKLP~LYR( 1j GQDAKLPLY 91
PPCRGD 81
TableXXXVII-WI-HLAA03-.i0mers-191P4D12B I
Each peptide Is a portion ofSEQ ID NO: 15; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
1234567890score
[HTDPRSQSEEL16
TabIeXXXVII-V9-HLA-A03-10mers-191P4D12
Each peptide Is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
Ps 123567890 [scoreSSLVAGTLSVH 24
102 GLLKVRPLQH 23
E2ILLRIN FF 216LVAGTVHH [21
98 CLGLKR 21121 RITFNFFLFF
96 I61L]GLLK LII105 KVRPLHQGV Li
FL2FP21 FF 1
!I LL!GLLKVRP 18
TabieXXXVII-V9-HLA.A0310mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
Po 1234567890 score
L ELLAGIRI [i21 FFLPFPLW F 17
[8 FTIRKKKKII 726 PL FFIY
2 WFFIYFYFY 2816I GIIRJIFNF I
7 HCACFFTK[151
88 KLKA IQ IE9[I RELLAGIR ]7I~-16 TFFL I 14
F-27! LWFFIYFYF 1439! LEMESVA 1
50AGLELLGSSN 14
51 GLELLGSSNP1453ELLGSSNPPA
77 ACFESKRK 14LLAGILLRIT 1
17RPLQH0VNS 1331 FIYFYFFL 1
LLGSSNPPAS 12[2ASASLAGTL] 128RKKKLKKAFR) 71
86 KKKLKKAFRF 12F18 12126 GIFMQMPWE] 12
1 FLFFFLPFP L 1114!YVAQAGLELL ii7SVHHCACFES[Jj7FESFTKRKKK F71
811 SFTKRKKKLK Li1100 LLGLLVRPL [i1l103 LLKVRPLQHQ 11
125I 11
0 r9 1ableP±2122JIj 3-10mE- 9P41 BI
00
00
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 10amino acids, and the endposition for each peptide isthe start position plus nine.F os 12 3456 7890f s=co re78] E LG-T SD V VT V1F-_
[]JRPAGLGT 11
F4CPAG-ELGT-SD1119
TabIeXXXVII-VI11-HLA-AO311mers-191 P412B3Each peptide Is a portionof SEQ (D NO: 23; eachstart position is specified,the length of peptide is 10amino acd s, and the end
position for each peptide Isthe start position plus nine.rPos 1245780 R~[D RLR LR VM VPP,[g RLRVVPPL 18
-8 RVM=VPPLPSL EN]M -PLPSLNP F16
[-A3]LRLRVMV 131,
of SEQ ID NO: 27; eachstart position is specified,the length of peptide is 10amino acids, and the end
position for each peptide Is[the start position plus nine.PosJ 1234567890 sejD LADPQEDs3KF 16
)j3]QVTVDVLADP 15E jDVaD ES 1DI~VL-ADPQEDSG LI:ADOWV~LADPQE 131
fTableXXXVII-V 4.H LA-A03-1 Omers-1 91 P4DI 2BEach peptide is a portionof SEQ ID NO: 29; eachstart position is specified,the length of peptide is amino acids, and the end
Iposition for each peptide isthe start position pius nine.I
[Posl 1234567890 iscore
D SSLATF-4NPA1 ALV 1
10 A S V GT3]L
[IDJSSPPSAL[I~1NPPAASL 8GSNPPA6]
TableXXXVIII-V1 -HLA-A26-1l0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
Eo1234567890score):38]1 DVVTVVLGQDI27r51 ETSOVD W 27KJ WWVGVIAAL 1) 2-71
GVIAALLFCL 26JVVWVLM-SRYI 251
j ]J[TWVLGQDAKLj 2[ 4:131EAWLLLLLLL ]F-231
IfableXXXVIII-V1 -HILA-A26-I Omers-1 911P401 2B3
Each peptidle Is a portion ofSEQ ID NO: 3; each startposition Is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
[gos 1234567890 ]Fc~r144 RVLVPPLPSL -23455 ETQTELLSP-G]Eg~351 WVVGVALL]Eg~[792 LTRENSIR7RL. 22RM EGKQMHF 2211861 EVKGTTSSRS 121)
369 ITIL FL il21
128 RVSTFPAGSF1 331 DVLD)PQEDSG
F439 EPEGRSYSTL[ JD9 91 EQPPRP I 9
24-91 SVRGLEDQNL F191
EN EMWGPEAWLL) 18)129811 DTLGFPPL7TT [18~J-2 FTGRCPAGEL Liz)223 OWSPGLLQ 17
11231 GEYECVSTF[16
224 WTSHPGL 16
2-96 TLG FPP 161472 EDQDGI KQ-A 16
10 WGPEAWLLLL F33 ELETSDVVTVJF F60EQVGQAWA
~jQVA WAR VDAG
116 NAVQADEGEyr 1l30 STFPAGSFQA
1EGQGLTL s 129)SGVRVDGDTL 1
294 1RVDGDTLGFP][
327 QVVDVLDPQ( ThE95 421 EGHDSKDN
00
00
Tab~eXXXVIII-VI -HLA-A26-1 Omers-1 91P40128
Each peptide Is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
[Pos 1 1234567890 1 sco-re4531 EIETQTELLS JI 1-5]2041 VTSEFHLVPS 1[ 141222 TCWSHPGLL II 1412351 RITHILHVSF 174
F24 1FLAEASVRGL I 141247 IEASVRGLED)Q] 142-59 1WHIGREGAML IF14293 VRVDGDTLGF] 143081 EHSGIYVCHV .1-4[328] VTDVLDPQE JF -1 I337] EDSGKQ VOL 14
13451 LVSASVVVVG III Th413-66 IWVVLMSRYH [1413-67 VVVLMSRYHR 14
141 ESVGLRAEGH[ TF4(14291DNSSCSVMSEjF 14(4-36 IMSEEPEGRSY f71444811 LTTVREIETQ IF141F44-] TTVREIETQT IF17450 TVREIETQTE 1l 4452 REIETQTELL JF14.4831 NHFVQENGTLI. 14
[-1-11 GPEAWLLLLLIF 7121 PEAWLLLLLL J[1l-3
[16LLLLLLLASF jIF713F4-01 VRVVLGQ9DAK]Fi131
1131riS581 ALEEGQGLTL It Thi31-8011 SVTWDTEVK Fi1311-11 VTWDTEVKGTII 131203 AVTSEFHLVP F132-331 0QRITHILHV 1F13
DQNLWHGR 1313-05 LTTEHSGIY Fj173
TTEHSGIYVC 17F4381 EEPEGRSYSTJJ 131441] EGRSYSTLTT F131
1471 EEQEGK L3
TableXXXVIII-V1 -HLA-A26-1I0mers-191P4D12B3
Each peptide is a portion ofSEQ ID NO: 3; eac; trposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine,Pos 11234567890 ]s-core
485 FVQENGTLRAIF 3500 GIYINGRGHL J13
TableXXXVIII-V2-HLA-A26-10mers-191MP412B
Each peptide is a portionof SEQ ID NO: 5; each
start position is specified,the length of peptide is amino acids, and the end
position for each peptide islthe start position plus nine.1
[P05 12456890Iscore
TableXXXVIII VW-HLA- 1A26-l0mers-191 P40128BEach peptide is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 10amino acids, and the end
position for each peptide isthe start position plus nine.
[Po 124680score][D HTDPRSQ-SEE o
jTab~eXXXVIII-V9-HLA-A26-I Omers-1 91P401283
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
1234567890 score(13 ITFNFFLFFF lFi24
28 LWFFIYFYFY Lz24[80 ESFTKRKKKL 123
215
(TableXXVIII-V9-HLA-A26-jliners-I 91P4D128
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
[Pos 1234567890 []FsoeF271 LWVFFIYFYF 1D
46j YVAQAGLELL 221
S9 FQLLL 17
4E EHYAQ( 16]
121 FRITFNFFLFF] [14
45 HYAA LE
19FLFPW 13
LI~I ILLRTFNF 12
F11 LRTNFF 12
11 11FLPP
F 22 1 FLFLF f l
29!FYYY I121
00
00
Efa-ch peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 10amino acids, and the endposition for each peptideis the start position plus
nine.jFos 123-456789-0 score]
GT-SD V-VTVVL Q IELGTSDVVT-V 15]
TableXXXVIII-V1 1-HLA-A26-I0mers-1 91 P4121Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 10amino acids, and the endposition for each peptideis the start position plus
nine.
RVMVPLPS 23
TableXXXVIII-V1 2-H L1A-1A26-1 Omers-191 P4D12B
Each peptide is a portion ofSEQ ID NO: 25; each startposition is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide Isthe tart osition plus nine.
[PosI 1234567890 reEPEGCSYSTLF20
[j3 1MSEEPEGCSY 14
8 EPGCSYST1-1 E SYSTLTT 13N
TabIeXXXVIII-V1 3-HLA-A26-1 Omers-19I1 413Each peptide Is a portionof SEQ ID NO: 3; each
start position is specified,the length of peptide is 10amino acids, and the end
position for each peptide Isthe start position plus nine.Pos 1234567890scr
7 DVLADPQEDS 18'
3I~ QVTVDVLADP [1
STVOVLADPQELIZF-2 SQVTVDVLAD F- lD I DSQ VTVD VIA
TableXXXVIII-V14-HLA-A26-l0mers-191P4D1B
Each peptide is a portionof SEQ ID NO: 29; eachstart position is specified,the length of peptide Is 10amino acids, and the endposition for each peptideis the start position plus
nine.EPos 1234567890o- (score][FSNPAAS3m
Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide Isthe start position plus nine.
[PoRs 12345679 score]132 FAGSFQARL 24
[150 LPSLNPGPAL j4[ii GPEAWLLLLL Iii[439] EPEGRSYSTL 23156 GPALEEGQGL IEE2~1I78 APSVTWDTEV [21!l276 PPP-YN-wTrRL 21176 SPAPSVTWDTI. 19103 PPRNPLDGSV L18407 DPRSQPEESVI 18411 QPEESVGLRAIE1835 ETSDVVTWL 1772 AGEGAQELAL 117
AGSFARLRL F17227 HPGLLQDQRI 1
3PPLTTEHSGI 16
DPQEDSGKQV 16289 LPSGVRVDGD 15H34 DSQVTDV -75
1 TabeXXXIX-V1 -HLA-8B0702-1 Omers-1 91 P4012Each peptide Is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide Is
amino acids, and the endposition for each peptide Isthe start position plus nine.
[Pos 1234567890 ~E1F-71 AEMWGPEAWLI 14D MPEAWLLL 14
[99_EQPPPPRNPL] 1114FI 581 ALEEGQGLTL 14249 SVRGLE QNLI_296 DGDTLG-F-PP-L fi136 1 FCLLVVVV )1409 RSQP-EESVGL] 14!D EMWGPEAW-LL 13M121 PEAWLLLLL E13E13 EAWLILLLLL J[13j
70 VOAGEGAQEL][13j[23j GEGAQELALL 13[11 PPPPRNPLDG 13
11061 NPLDGSVL-R] 13141 LRLRVLVPPL [:1j212 PSRSMNGQPL]1 13236 I _THILHVSFL 1 1329 H gREGAL 1277l PPSYNWTRLD 13j287 GPPSVRD9 131336 QEDSGKQVDL][ Th
1351j VVVGVIAALL ][1j355 VIAALLFCLL ][13j495 KPTGNGlYINI[13~
10!1 WGPEAWLLLL Eg~1-00 QPPPPRN PLO 12104 PRNLDGSVL IF12137 FQARLRLRVL 12~j144 RVLVPPLPSL I121
114881 PPLSL-NPG-P]II1215 NPGPALEEGQ jiD160 EEGQGLTLAA j12E [VPSRSM NGQP 12
(231 LITIL 2
00
00
TableXXXIX-V1 -HLA-80702-I Omers-191PD12Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide Isthe start position plus nine,
[Posl 1234567890 ]ER~1244 [LEAVGLI ].1211262 IGREGAMLKCL] 7213081 EHSGIYVCHV ][12]1337jEDSGKQ VOLV 12[1~13-50 WVVGVIAAL][2383 [QKYEEELTL][ 121
i3921 LTRENSIRRL][ 12,14-41 EGRSYSTLTT][ 12145211 REIETQTELL 11 12
FTGRCPAGEL][F 171F 411 TVVLGQDAKL] [i1i
F5-61 GDSGEQVGQVF1 Lii138 QARLRLRVLV 11ll
2011~ sAAvTSEFHL 2-191 QPLTCWVSHP.F- ]I2211 LTCWVSHPGLJ. 112575QPPPSYNWTR F1112-80 YNWTRLDGPLF Liii354 GVIAALLFCL J[F-Ti357 AALLFCLLWV IF 17113581 ALLFCLLVV\I IF j1ji14181 LRAEGHPDSL j- 1i11423 HPDSLKDNSS [j i14-51 VREIETQTEL l111r1462 SPGSGRAEEE] 1I v11500 GIYINGRGHLD
TableXXXIX-V2-HLA-B0702-1 Omers-
191 P40128Each peptide is a portion ofSEQ ID NO: 5; each startposition is specified, thelength of peptide is 10amn acids, and the end
position for each peptide isthe start position plus nine.Pos1 1234567890 1score
L GQDAKLPCLj 11-
TableXXXIX-V2-HLA-80702-l0mers-
191 P4D128Each peptide is a portion ofSEQ ID NO: 5; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
[Pos 1234567890 scre
I LPCLYRGDsGF [71]1LYRGDSGEQV 1010
TabeXXXIX-V7-HLA-830702-l0mers-
191 P4D1 28Each peptide Is a portionof SEQ ID NO: 15; eachstart position is specified,the length of peptide is 10amino acids, and the end
position for each peptide isthe start position plus nine.Iposi 135 789 scorel
TableXXXIX-V9-HLA-B0702-l0mers-
191 P4D1 2BEach peptide is a portion ofSEQ ID NO: 19; each startposition Is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
[Po 124679 score
F59 NPA2S0A723 LPPLFF25 FPV IY JZ92 AFFQ1L 6~fj
F94 RFQLLG 31100lLGLVPL] 3117RLQQVS] 3IZ MRE1AI 72~
1-4 T FF FFFL 72~I 43 ESHYVAQAGL F172F57SNPSS 2
[TableXXXIX-V9-HLA-B0702-1 Omers-
I 91P4D12BEach peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptIde is
amino acids, and the endposition for each peptide isthe start position plus ine[Po 1234567890 1 s~r
E@90 KKAFRFIQCL 1jDlDI RRELLAGILL 1[j11E12 RITIFNFLFF Il...iiE18 FF FLPFL] IiE[f 3111FFFL [46 F1QGLL] li
53 EL SPA[11!
19 PAALAG] I-JASLVAGTLSV] iijl
[E FKKK] ii[9 KfRFQLL]
[87 KKKARI F95 FQLLLL]..1
[ios~ F- KRLHV] 01
EA 20 FFL L]91
E33 YFYFYFFLEM][--9[41 EMESH 1AA]91Ess GSNPS]9I[70 TLVHAC]9F83 TKKK K]9F84 KK K F]9
[12 ERYFGIF][[123YFQGIFMQM][F9
TabIeXXXIX-V1O-HLA-B 0702-1 Omers-
191P4D128
00
00
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is 10amino acids, and the end
position for each peptide Isthe start position plus nine.,IPosl 1234567890 1scorel
GTSDVVTVVL 1F-4]CPAGELGTSD [1477GLTSV~1F7E8 TDVT l
TableXXXIX.V1 1-HLA-80702-1 Omers-
191P40128Each pepde is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is 10amino acids, and the end
ipositon for each peptide isthe start position plus nine.
JPos]13479 0 screl
L RL R VMVPPL F13-8 R VM VP-PL-P SL 13
F- QARLRLRVMV F11]
F lRL RLRVM F
TableXXXIX-VI 2-11-A.80702-1 Omers-
191 P4D12BEach peptide is a portionof SEQ ID NO: 25; eachstart position is specified,the length of peptide is 10amino acids, and the endposition for each peptideIs the start position plus
nine-- POs 1234567890
D EPEGCSYSTL 2
TableXXXIX-Vi 3-H LA-B0702-1 Omers-
191 P4012BEach peptide is a portionof SEQ ID NO: 27; eachstart osition is spcfied,
tihe length of peptide is 10amino acids, and the endposition for each peptideis the start position plus
nine.[posI 123-45-67890 score
DDSQVTVDVLA
D J QVVVLD Z
TableXXIV-V1 1-HLA-A0203-9mers-
191 P4D1 28
IFNoResultsFoun. j
TableXXIV-V1 2-H LA-A0203-9mers-
191P4D12B
Posl 1234678NoResultsFound.
rableXXIV-V13-HLA-A0203-9mers-
191 P4D12B
[Pos 12345678NoResultsFound.
TableXXIV-V14-HLA-A0203-9mers-
191 P40128IPos 4679score
[NoResults Found.
TableXLl-V1 -HLA-81510-1 Omers-
191 P401 28
NoResultsFound.
TableXLI-V2-HLA-831510OA0mers-
191 P4D12B[Es 1.245677890cr
NoResults =ound.
TableXLI-W7-HLA-
191 P4D128[PsI1234567890 IscoreNoResultsFound,
TableXL-V9-HLA.B15lO-l0mers-
191 P40128
7Pos 45780scoreNo ZesultsFoud
TableXLl-VI 0-H LA-
191 P40128
TableXXIV-V7-HLA-A0203-9mers-
191 P40128
PH 1g 23456789 score
TableXXIV-V9-HLIFA0203-9mers-
191P4D12BPos 123456789cr
NoesultsFound.
TableXXIV-V10H LA-AO203-9mers-
191 P4D1 28
Pos 123456789crNoeuts0n
00
00
TableXLI-V1 0-H LA-Bi 510-1 Omers-191P4DI2B
12456790 sc-r el[NoResultsFound.
TableXLI-V1 1-HLA-81510-j1iners-
191 P4DI2B
E 124680score
,[NoResultsFound.
TableXLI-V1 2-HLA-831510-1 Omers-
191 P4D128
jEs 124679icore
IFNoResultsFound.
TableXLI-VI 3-HLA-B15IO-l0mers-
191 P401 28
[P-osJ 124680icorel,t NoResultsFound.j
TableXLI-Vl4-HLA- I831510-j1iners- J
191P4D12B23456890 soore
,FNoResultsFound.
IITableXLII-V1-HLA- 1B 2705-1 Omers-
191P4012B
I[gI 124679scoreNoResultsFound.
TableXLII-V2-HLA-B2705-1 Oiners-
191 P4D12BPos 124680scoe
N oR es-ul-t s-Fou-nd.7
TableXLII-W-HLA-B2705-l0mers-
191 P4D1 28Po 1346790scre
TableXLI-V9.HL1A-B2705-l0mers-
191 P4DI128
Pot 135680 cr
TableXLII-V9-HLA-B2705-1 Omers-191P40128
I 7s12467890soreNoResultou.
TableXLII-VI 0-H LA-B2705-1 Omers-
191 P4012B
[Pos 124679icore],FNoResultsFound.j
TableX~LI-Vi 1-HLA-82705-1 Omers-
191 P4D1 287Pos 124679 coreIFNoResultsFound.[TableXLII-V1 2-H LA- iF 2705-10Oiers-S 191P4D12B13579 cr1
NoResultsFound.][TableXLII-VI 3-HLA1B2705-1 Omers-
191 P401 28
No~esultound.
TableXLII-V14-HLA-B2705-1 Omers-
191 P401 2BPos 124680score
NoResultsFound.
TableXLIII-V1 -HLA-B2709-1 Omers-
191P4D12BPos 123457890sco re
N[-oResultsFound.
TableXLlIl-V2-HLA-832709-1 Omers-
1911P401 28Pos 123-456789-0 score
FTableXLIll-W-HLA-B2709-l0iners-191 P4D1 28
PoN 235780score
TableXLIII-V7-HLA-B2709-1 Omers-
191P4D12B
[Pos score790FNoResultsFound.JTableXLIII-V9-HLA-
191 P401 28
NoResultsEound.j
TableXLll-V1 0-H LA-F82709-1 Omers-191 P401 28
NoResultsFound.
TableXLIII-V1 1-HLA-82709-1 Omers-
191 P4D1 281PsJ12345678901 jscor
NoResultsFound.
TableXLI-1 42-H11A-B 2709- 1 mers-
191P4D128Pos 12345 7890
Noeut ud j[TableXLIII-V1 3-H LA-FB2709-1 Omers-
1 o 9lP4Dl2B
TableXLIlI-V1 4-HLA-832709-1 Omers-191 P40128
Pos 234567890 Fsor]
FNoResultsFound.
[TableXLIV-V1 -HLA-84402-
Each peptide is a portion ofSEQ ID NO: 3; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
TableXLIV-V1 -HLA-B4402- Ta bIe X L V- V1 HLA.8- B4 402 Tabi1eXLiV.VI-HLA-844(l0mers-1 91 P40128 l0mers-1 91 P40128 l0mers.1911P40128Each peptide is a portion of Each peptide is a portion of Each peptide Is a portion00 STEQ ID NO: 3; each start SEQ ID NO: 3; each start SEQ ID NO: 3; each staposition Is specified, the position is specified, the position Is specified, th(length of peptide Is 10 length of peptide is 10 length of peptide Is amino acids, and the end amino acids, and the end amino acids, and the enposition for each peptido is position for each peptide is position for each peptidethe start position plus nine, the start position plus nine, the start position plus ninPos 1234567890 score Pos 1234567890 scr os 1234567890452 REIETQTELL F25 259 WHGEGM~7 VDAGEGAQELKF-7 AEMWGPEWL24 262 GREGAMLKCL 794 E LALLHSKYGL12 PEAWLLLLLL 23 319 NEFSSRDSQV 1412 DEGEYEORVS E:
F_ 7 EAQLL 2354 GVIAALLFCL 1125 YECRVSTFPA E:7i77 QELALLHSKY 2 392 LTRESRRL] 14 E4 RVLVPPLPSL 1-23 GEYEORVSTF F22 [409 RSQPEESVGL 1F87 VKGTTSSRSFK
[336 QEDSGKQVDL 22 412 PES=VGL=RAE1422T SHGL l00 469 EEEE000EGI 20 41 EESVGLRAEG 14 20 LLQDQRITHI F199 EQPPPPRNp F 18 439 EPEGRSYSTL 1424IAAVG174 EGPPVT 8483 NHFVQENGTL 14249 SVRGLEDQNL E:ETSDvvTVVL 17 4941 AKPTGNGIyi 14 2-53 LEDQNLWHIG Er72 AGEGAQELAL 17 jDJ GAEMWGPEAW 113 27 1 LSEGQPPPSY E13 EAWLLLLLLL 16l1 GPEAWLLLLL 1322 EQPPy
134GSQGLL 16 E9 LLASF 13347 SASVVVVGVI E16 EEQGT02 6 GELETSDvvr 13 355 VIAALLFCLLEl476 EGIKQAMNHF 16 128RV STFPAGSF 1337RKAQQMTQY
81 EMGFA 1-5 141 LRLRVLVPPL 1 383 TQKEEELTL E1K-9I MWGPEAWLU.. 15 159 LEEGQGLTLA 1389 ELTLTRENSI 1j;98 VEQPPPN 15 199 SRSMVTSEF 13 394 RENSIRRLHS 11158 ALEEGQGLTL 15 231l LQDQRITHIL 13 440 PEGRSYSTLT 1r,173 AEGSPAPSVT I 15 250 VRGLEDQNLw 1 5 IETQTELLSp 1r.2773 EGQPPPSYNW 15 29 1 SGVRVDGDTL 145TELPGr 1[3-50 W GVIMAL 15 1293 VRVDGDTLGF F13361] FCLLVVVVVL 15 296 DGDTLGFPPL 1 TableXLIV-V2HLA-I38-7 EEELTLTREN 1 15 824RSVTDLF13 4402-l0mers-1388 EELTLTRENS 1535 VVVGVIAALL 13 191P4D126
peptide is a portion1420 AEGHPSLK0 15 [352 WGVIAALLF 13 of SEQ ID NO: 5; each437 SEEEGSys 15 438 EEPEGRSYST 13 start position is specified,R EDQE KQ]EN 468 EEEEQDE 13the length of peptide is 471 EE D Q D E G K 1 5 4 8EEEEDQ DEG 1 3 amino acids, and the end10o WGEW l1 7 EDDGK1 position for each peptide is158 SGEQVGQVAW 14 487 QENTLRAKP 13 the start position plus nine.KYGLHVSPAY 14 4-93 RAKPTGNG1Y 13 PR 123467890 score104 PRNPLDGSL 14 E MPLSLGAEMW 12 GQDAK LPCLY LII14 25 FTGRCPAGEL FI LGQDAKLPCL [I-]l7FQARLRLRVL 14 4 LETSDVVTVV 12 L~ AKLPCLYRGD
1L SLNP.PAL 14 4 TVLQDAKL 12206] 4LPR 14 LGQDAKLPCF 1f2l iTableXLlv. HLA2I I246 AEASVRGL ED 1A~ 45 0 G-QDAKLPCF 121 L2~-9Po3
00
00
Each peptide is a portion ofSEQ ID NO: 15; each startposition is specified, thelength of peptide is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
Pos 1234567890 scorel2 SHHTDPRSQS4 HTDPRSQSEE[JHSHHTOPRSQ 22
STDPRSQSEEP 2I[9 SQSEEPEGRS 2
HHTDPRSQSE 1[7 PRSQSEEPEG [2[8 RSQSEEPEGR [2
TableXLIV-V9-HLA-4402.I 0mers-191P4D12B
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
Pos 1234567890 score
11 CERGYFQGIF 21
8ESFTKRKKKL 18
RELLAGILLR 1721 FFLPFPLWF 1711 LRITFNFFLF 16
16 NFFLFFFLPF 1662 ASASLVAGTL 15
SFESFTKRKKK 15
[i KRKKKLKKAF I 15S91 KAFRFQCLL FIS92 AFRFIQCLLL
94 RFIQCLLLGL 192 ILLRITFNFF 13
13 ITFNFFLFFF 11423 LPFPLVVFFI 114
1301 FFIYFFYFF 1TLEMESHYVAQj[ 141
42 MESHYVAQAG][ 141
I 57 SSNPPASASL[ 141KKAFRFQCL II j4i
j125 QGIFMQAAPW 142 RRELLAGILL 134 ELLAGILLRI 13
TableXLIV-V9-HLA-B4402-10mers-191P4D128
Each peptide is a portion ofSEQ ID NO: 19; each start
position is specified, thelength of peptide Is 10
amino acids, and the endposition for each peptide isthe start position plus nine.
Pos 1234567890 scoreI LAGILLRITFl 138 GILLRITFNF I
118 FLFFFLPFPL 13
22 FLPFPLVVFF 1324 PFPLWFFIY 11131
S25 FPLWFFIYF 13126 PLVVFFYFY 11328 WFFYFYFY 13
I37 YFFLEMESHY 13S52 LELLGSSNPP 13
I 86 KKKLKKAFRFII 131100 LLGLLKVRPL J[131115 NSCDCERGYF[ 1312 RITFNFFLFF
29 VFFIYFYFYF E 1243 ESHYVAQAGL 12
I46! YVAQAGLELL 1287 KKLKKAFRFI 1295 FQCLLLGLL 12
11E VNSCDCERGYI 1211 MRRELLAGILL 11I
.14 TFNFFLFFFL 1145 HYVAQAGLEL 11]70 TLSVHHCACF 1173 VHHCACFESF 11
SAGILLRITFN 101 LLRITFNFFL 10
1 271 LWFFIYFYF 1031 FIYFYFYFFL 10
[18DCERGYFQGI][ 101
TableXLIV-V10 HLA-84402-1 Omers-
191P4D12B
Each peptide is a portionof SEQ ID NO: 21; eachstart position is specified,the length of peptide is amino acids, and the endposition for each peptide
is the start position plusnine.
1234567890 s
SGTSDVVTVL 1ID GELGTSDVWT 1
TableXLIV-V11-HLA-B4402-10Dmers-
191P4D128
Each peptide is a portionof SEQ ID NO: 23; eachstart position is specified,the length of peptide is amino acids, and the end
posion for each peptide isthe start position plus nine.
1234567890 scoeLRLRVMVPPL 1
8 RVMVPPLPSL 12[ARLRLRVMVP [2TableXLIV-V1 2-H LA-
84402-1 Omers-191P4D128
Each peptide is a portion oSEQ ID NO: 25; each startposition is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.
1234567890 scor
SEEPEGCSYS 14EPEGCSYSTL 14EEPEGCSYST 3PEGCSYSTLT 11
L11MSEEPEGCSY TableXLIV-V1 3-HLA-
B4402-10mers-191P4D12B
Each peptide Is a portion ofSEQ ID NO: 27; each start
position is specified, thelength of peptide is
amino acids, and the endposition for each peptide isthe start position plus nine.Posi 1234567890 s
2 SQVTVDVLAD 610 ADPQEDSGKQ S1 LADPQEDSGK 4N DSQVTVDVLA
F-41 2~F51TVDVLADPQE 7
[D y0PE]~
[Is 112345678flO score1EI -MeltsFoundjl
00
00
TableXLV-V1 3H LA-83510 1-j1iners-
191 P4D12BPos 23457890score]
NoResujitsFound.
TableXLV-V14-HLA-85101-1 Omers-
191 P4D1 28
fNoResultsFound.TableXLV-V1-HA85101-l0mers
191 PD128F 1345789 score
LNoReusoud
TableXLV-V2-HLA-B5101-l0mers-
191 P4DI2B[Po s 12345678901 s
INoResultsFound-.
TableXLV-W-HLA-B51O01 -1Omers-
191 P4D1 28
NoRs-ultspound.
FTab-e XV-94LA-SB5101-l0mers-191 P41)1 28
P123457890or
NoResultsFound.
TableXLV-V1O-HLA-851 01-l0mers-
191 P40128FPos 34689E[R
INoResults Found.
TableXKLV-V1 1-H LA-851 01-l0mers-
191P4012B
L TableXLVI-Vl -HLA-DRB1 -0101-l5mers-191P412Each peptide is a portion of SEQ ID
NO: 3; each start position isspecified, the length of peptide is 15amino acids, and the end position
for each peptide Is the start positionplus fourteen.
Pos 12456789012345 [Fc~oe1279] SYNWTRLDGPLPSGV L...N140 RLL3LP2SL205 TSEFHLVPSRSMNGQ 3212991 TLGFPPLTTEHSGIY 32
3SDVVVLGQDAKLP F 371141VTVVLGQDAKPCYJ 31j
[3401 GKQVDLVSASWW 31349 SVVVVGVIAALFCL31]144 RVLVPPLPSLNPGPA 30g147 VPPLPSLNPGPALEE 30350] WWVGVMlLFCL 351 I PCFYRGDSGEQVGQV 212 PEA WLLLLLLLASFT 2
247 EASVRGLEDQNLWHI F27358ALLFCLLVVVVVLMS] 27371l MSRYHRRSQQMTQ-K 26
GAEMWGPEAWLLLLL 213 EAWL-LLLIIASFTG[2514] AWLLLLLLLASFTGR[25
LLLLLASFTGR F25]1
TableXLVI-V1-HLA-DRB1-01 01 l5mers-19 P D 2
Each peptide Is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is amino acids, and the end position
for each peptide Is the start positionplus fourteen.
Eos 123456789012345
19j LLLLASFTGRCPAGE 10-2 PPPRNPLDGSVLLRN
1109! DGSVLLRNAVQADEG 1122 1193 SRSFKHSRsAAvTSE 239 ILHVSFLAEASVRGL J1 251255 DQNLWHIGREGAML
12651 GAMLKCLSEGQPpps j[ i310 [SGIYVCHVSNE~S 454 IETQTELL-PGSGRA] 2[ [64QVAWARVD-AGEGAQEJ[ 24J[76 AQLLLHSKY GLHV 1f 24[79 LALLHSKYGLHVSPA 1[12 ECRVSTFPAGSFQAR JF24[1-56 I GPALEEGQLAS iDi162 GQGLTLAASCTAE-GS ][24
181VWDTEVKGTTSSRS] 24210 LVPSRSMNGQLTV] 24j
tJSRSMNGQPLTws [241282 WTLDPLSGRD 4
1347 SASVVVVGVIAALLF U241353 VGVIAALLFCLvJjiI357 AALLFCLLVVLIIR LVVVVVLMSRYHRRK[24
395 ENSIRRLHSHHTDPR F-24442 GRSYSTL1 MEET 24
1LLLLLLLASFTGC 238RCPAGELETSDVTV 23
184 EKTSR FF(-I23228] PGLDQIHLH 9
123IQRITHILHVSFLAE 1 23J289 LPSGVRVDGDLGFP 23
3391 SGKQVDLVSASVVWV 23SVSASWVVGVIMLL 23
3FCLLVVVWLMS 23PIDSLKDNSSCVMSE 23
8 LTTV REIETQTELLS 2457 QTLSPGSGRAEEE j343 NHFVQENGTLRAKPTD23
00
00
TableXLVI-V1 -HLA-DRB1 -0101-1l5mers-191P4D12B
Each peptide Is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide Is 15amino acids, and the end position
for each peptide is the start positionplus fourteen.
[P o'sI 1234667-89012346- [score]LSLGAEMGPAL F72
1 551RGDSGEQVQAA F72F59 jGEQVGQVAAVA 7-12
[-1411 LRLRVLVPLPLN 72~12-041 VTSEFHLV PSRSMNG J[ 22[2501 VRGLEDQNLWHIGRE][221
12-68 ILKCLSEGQP-P-PSYNW][ 2[3111 GIYVCHVSN FSR [223271 QvTVDVLDPQ)EDSGK 1[[2-2]
[3601 LFCLLVVVVVLMSRY ][22[451_ VREIETQTESG ]22[2-18L GQPLTCWSPGL [211256_QNLWHIGREGAMK] F2127-7] PPSYNTRDPS]21F33[ELETSDVTVQD[20
IVAWARVAEAE] F20[1-23 GEYECRVFPGF20
NPGPALEEQ L ][2701321] FSRSVVVD [201429 DNSSCSVMEPG] F21482 MN H FV Q ENGTL RA KP] F2011490 GTLRAKPTGNGIYIN ][20
LASFTGRCPAGELET I[]19[391 vvVVLGQD)AKLPCF III 9[-38 QALL VPLPSIF191
QRITHILHVSFLAEA IF___2-42 VSFLAEA VRGLEDQ iF19[
14-121 PEESVGLRAGHDS F19][4151 SVGLRAEGHDLDU
71 AEMWGPEAWLLLLLL ]JF18[911 SPAYEGRVEQPPPPRj 178
[134J AGSFQARLRLRVLVP ]r18111651 LTLMSCESA 1181[26J rGMKCS1QP 8]Th2661 AMLKCLSEG3QPPPy1T8]
18 YNWTRLDGPLPSGVR F1 8368 1WVLMSRYR QM j[ 183871 EEELTLTRENIR F[ a81:11]1 GPEAWLLLLS DJz
Ta leXL VI-Vl .HLA-DRBl-01 01-I S5mers-1 91 P4DI 28
Each peptide is a portion of SEQ I0NO: 3; each start position is
specified, the length of peptide Is 15amino acids, and the end position
for each peptide is the start positionplus fourteen.
[Fos 11234567890124 soe67l WAR VDAGEGAQELAL ]j17
[681' ARDGGQEAL1171[78-3 HSKYGLHVSPAYEGR II 17[gI [RNAVQADEGEOR Jj17[125[YECRVSTFPAGFQA117135 GSFQARLRLR P E1117[1481 PP L PS LN PGPA LEEG ]..F1711501 LPSLNPGPALEEGQOEE171167 LAASCTAEG-SPAPSV l[-177120 SAAVTSEFEHLVPSRS [[171221] LTCWSHPGLQQ [17
122 VSHPGLLQDQII [[1712381 HILHVSFLAASR l[ 2h12-57 _NLWHIGREG L KCL j[17[25 LWHIGREGAMKL [11[2&I RLDGPLPSGVRVDGD][ i12911 SGVRVDGDTL-GFP-PL iF 1294RVDGDThGFPPLTTE ]I1303 PPLTTEHSGIYVCHVl 71330VDVLDPQEDSGKVJ Eii[33 VLDPQEDSGKV V] F1711342 QVDLVSASV GV 177[348 ASWGI LFC J[ 17
g3s GVAALLFCLLWW F-7356 ALLCLWW J9~1407DPRSQPEESVGLRAE][ 17
4321 SCSVMSEEPEGRSYS if1711458TELLS3GSGRAEEEE IF1-7[R DEGIKQAMNHFVQEN IF 17
TableXLVI-V2-HLA-DRB1.0i 01-l5mers-1 91 P4DI 28
Each peptide is a portion of SEQID NO: 5; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.
Pos *123456789012345 soeFI21 VTVVLGQDAKLPCLY 113 PCLYRGDSGEQVGQV1Z E21DAKLPCLYRGDGQ JDI~ VVTVVLGQDAKLPCL
Tab-1eXLVI-V7-HLA-DRB1- 010'1- 17l5mers-191P4D12B
Each peptide is a portion of SEQID NO: 15; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
-satposition plus fourteen.[Pos 123456789012345 sorDj IRRLHSHHTDPRSQ-S 14I HHTDPRSQSEEER[ I
F1 RSQSEEPEGRSYSTI[101DII SIRRLHSHHTOPRSQ [1[ii ]DPRSQSEEPEGRSYSI7F14 SQSEEPEGRY STLT 119[D RRLHSHHTDPSQEf2D I LHSHHTDPRSQSEE-P 18[q HTDPRSQSEEPEGRSLI[12 PRSQSEEPEGRSYST 11-8I[-4]RLHSHHTDPRSSE~L[ HSHHTDPRSQSEEPE L2-7
TableXLVI-V9-HLA-DRBI-0101-15mers-191P4D12B
Each peptide is a portion of SEQID NO: 19; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide Is the
start position plus fourteen.123456789012345 scoeJ
[43 ESHYVAQAGLELLGS] IF--3[49 QAGLELLGSSNPPAS][32[36 FYFFLEMESHYVAQA][ 311[10-3] LLKVRPLQHQGVNSC[ 28~
F17 FFLFFFLPFPLWFF r[2790g KKAFRFIQCLLLGLL] F27]98[ CLLLGLLKVRPLQHQ [2618 FLFFFLPFPLWFFI 260 PPASASLVAGTLSVH 261 PASASLVAGTLSVHH- 2493 FRFIQCLLLGLLKVR 2L 97j QCLLLGLLKVRPLQH 2
00
00
TableXLVI-V9-HLA-DRB1 -01 01.-l5mers-191P4D1B
Each peptide is a portion of SEQID NO: 19; each start position is
specified, the length of peptide Isamino acids, and the end
position for each peptide is thestart position plus fourteen.
[Pos 1234567890124 1W] ER[61 LAGILLRITFNFFLF lIF72116 JNFFLFFFL-PFPLWVF IF72J
AGILLRI FNFLFF[22F521 LELLGSSNPPAS-ASL ]22
[1001 LLGLLKVRPLQHQGv] F22iGILLRITFNFFLFFF 1[211
L-2ZI LWFFIY-FYFYFFLE 21121 RITFNFFLFFFLI PPff0341 FYFYFFLEMES HYVA FI 20
S92 1FFQLLGLv 20f2]1 ELLAGILLFNFF 119f14 1TFNFFLFFFLPFPLV[[1l9!
11 FNFFLFFFLPFPWI[]F31 FIYFYFYFLEMESH J-gF33 YFYFYFFLEMESHYV][ 19
W4 YVAQAGLELLGSSNP] 19IFIQLLLKRPL 3[ 191LLRITFNFFLFFFLP ][18
19] LFFFLPFPLWFFIy F~F225]__FPLWFFIF FYF 181F 28 WFYYYFLM]
841 KRKKKLKKAFRFIQC ]F 18[120 ERGYFQGIFMQA~] iiI[j13 ITFNFFLFFFLPFPL [17
FFFLPFPLWVFFIyF 17I22! FLPFPLVVFFI YFF 129 VFFIYFYFYFFLEME 17
1371 YFFLEMESHYVQAG [17441 SHYVAQAGLELLGSS [794 RFIQCLLLGLL VRP[172] RRELLAGILLRF [1
21! FFLPFPLVVFFIYFY ri-1I39 FLEMESHYVAQAGLEF1641 EMESHYVAQAGLELL 1648 AQAGLELLGSSNPPA I 51! GLELLGSSNPP ss]Th541 LLGSSNPPASASLVA EE56 GSSNPPASASLVAGT j[1668IIV CC S J[ 161
TableXLVI-V9-HLA-DRBI-01 01-15mers-191P4D12B3
Each peptidle is a portion of SEQID NO: 19; each start position is
specified, the length of peptide Is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.
Mjo 123456789012345 [sorTLVHAFSFTK E1
15 5]J KV RP LQH Q GVNSC DC 1 E16
TableXLVI-VI 0-HLA-DRB1-01 01l5mers-1 91P4D128
Each peptide is a portion of SEQID NO: 21; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide Is the
start position plus fourteen.Flo-s1l 12345678901235I~~
Each peptide Is a portion of SEQID NO: 25; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each pepfide is the
start position plus fourteen.[Pos 123456789012345 seg[14! GCSYSTLTTREE I2412]IDNSSCSVMSEEPEGC [:I
12I CSVMSEE PEG CSYST [7-6[EFCSYSTL1TVREIETQ 1[]71
abIeXLVI-V13-HLA-DRB1..0101-115mers-191P4D12BJ
Each peptide is a portion of SEQID NO: 27; each start position isspecified, the length of peptidle is
15 amino acids, and the endposition for each peptidle is the
1 start position plus fourteen.l 123456789012345 scr
FSSRDSQVTVDVLAD [IDSQVTVDFA 1ED 7
14 ILAD)PQEDSGKQVDLvIF17[2]QVTVDVAPES 16
101 TVOVLADPQEDSGKQ Lji6i[SQVTVDVLADPQEDS
[2]SSRDSQVVDVLDP 141[12 DVLADPQEDSGKQVD [j
[TableXLVl-V14-HLA-DRB1 -01 'I--1
Each peptide is a portion of SEQID NO: 29; each start position Isspecified, the length of peptide is
15 amino acids, and the endposition for each peptidle is the
tart position plus fourteen.[PosI 123456789012345 score11i PPASASLVAGTLSVH D2] PASASLVAGTLSVH-H Eg~
L E LL G SSNp-pASA S-L 2 2[j GLELLGSSNPPASAS 16EN~2 LLGSSNPPASASLVA 16E2] GSSNPPASASLVAGT 16
2]AGLELLGSSNPPASAF1521LGSSNPPASASLVAG
i13 ASSLVAGTLSVHHO ELLG SNppAS ASLV 14
L:8] SSNPPASASLVAGTL 14
TabIeXLVI-V1 1-HLA-DRBI-0101..l5mers-191P4D12B
Each peptide is a portion of SEQID NO: 23; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.[PosI 123456789012345 Fs~r
[JRLRLRVMVPPLPSLN 30[11RVMVPPLPSLNPGPA L9[0LRLRVMVPPLPSLNP
QARLRL RVMVPp~S~~[]AQARLRVMVP 18EIIGSFQARLRLRMVP1
GS1FQARLRLRVMVPP I17Ejfl RLRVMVPPLPSLNPG 16gI2 FPAGSFQARLRLRVMF15
2LRVMVPPLPSLNPGP 1[278RRMVpPL1
I TableXLVI-V12-HLADRBI-0101-1II 1 Smers-1 91 P401 2B
00
00
FTableXLVI-V14-HL11A-DRBI-o101-]
Each peptide Is a portion of SEQID NO: 29; each start position isspecified, the length of peptide is
amino acids, and the endposition for each peptide is theIstart position plus fourteen.
[Posl 123456789012345 sce]A ASLVAG T-L S-VHHC A C r4
TableXLVII-V1 -HLA-DRBI-0301-1 Smers-191 P4DI 28
Each peptide is a portion of SEQ ID~NO: 3; each start position Is
specified, the length of peptide is
amino acids, and the end
position plus fourteen.Posl 12345678024 [scorel178 1APSVTWDTEvKG1TS] 29I~227 HPGLLQ RTHL 1281411TVVLGQDALP FJ[27
73791 AQQMTQ E TL] 7251141 AWLLLLLLLASFTGR] 231
290 PSGVRVDGDTLGFPP J 2313 9 VVTVLQD LCFIiI
1703PPRNPLDGVLN F 221247 EASVRGLEDQNLWHI If-221117 RNAVQADEGEYECRV][ 21J142 RLRVLVPPPLP ]211233 DQRITHILHVSF-LAE 11211325 1DSQVTV0VDED] 211738] ASVVWGVIAALLFC]21F3491 SVVWVGVIMLLFOL]21Z--16GAEMWGPEAWLLLL]L 20
17561 GPALEEGQGLTLAAS 2012421 VSFLAESR ED ]20249 SVIRGLEDQLHG] 202921 GVRV0DTL FPP 2] 0
135 VVVGVIMLFCL] 2013521 WGVIALF LW] 20113531 VGVIAALLFCLLVW 20~363 LLWWVLMSRYHRR] 20i
1126 ECRVSTFPAGSFQAR] 1913021 FPPLTEHSGIYVC] 91328 VTVDVLDPQEDSGKQ][ 19~136511VVWVLMSRYHRRKA][ 191387 EEELTLTRENSIRRL E]19lI 77 QELALLHSKYGLHVS .j 18]
TableXLVII-V1-HLA-DRBI-0301-11Smers-1 911P40D1 2B
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is15 amino acids, and the end
posilion for each peptide is the startLposition plus fourteen. I
E~ 1234568024 1IsrF1III SVLLRNAVQA0E1265 IGAMLKOLSEGQPP F7i81286 DGPLPSGVRV DT] 7813-191 NEFSSRDSQVTDVL] 7Dj1329TVDVLDPQDKV] ThI-1433CSVMSEEPEGRSYST] F 1I
VREIETQTELLPG ]18[7]JGLHVSPAYEGRVQ Liz-7[97] R'/EQPPPPRNLG 17B1 ILHVSFILAEASG 12-55jDQNLWHIGREGAMLKj 1711311 GIYVCHVSNEFSRD] F71IE DPQEDSGKQV-DLVS-A][E36 BVVLMVSRYHRRAQ[ 7jI381 IQMTQKYEEETLR[ F 17E4011LHSHHTDPRSQPEES1[ 1l1 EESVGLRAEGPL I[ 17H~I YSTLTTVREIETQTE F[ 17K~jDEG1KQAMNHFVQEN [17F479] K QA MN H FVQ ENGTI[ 171471 TLRAKPTGNGYN [17DI LGAEMWGPALL I[ 161
EAWLLLLLLLST nt16Ej DAKLPCFYRG DSGQItZE~j VDAGEGAQELHS l[:16F1i-4 AGSFQARLRLRVLVP I[16FEI~LRNAVQADEGEC j[15F130] STFPAGSFQALL j 15gi~j FPAGSFQARLRLRVL 1[]15
9 SRsAAvSEFHLVPS I15~94 LC HPLQDQR I15~F2-36 ITHILHVSFLAEASV 1[15
[JAMNHF VQENGT LRAK I 5F15]_WLLLLLLLASF GRC j 4
LLLLg4 ASFTGRCPA I 4I1ELAIIHSKYGLHVSP [4
r1709 DGSVLILRNAVQADEG1 41
1ll~ GSVLRNVQAGE 14
TableXLVII-V1 -HLA-DRB1 -0301-l5mers-1 91 P4012
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is the startposition plus fourteen.
IPos F123456789012345 ]scorel144 RVLVPPLPSLNPGPA F14
280 1YNWTRLDGPLPSGVR Jt.1411342 QVDLVSASVV V [1413-56 IMLLFCLLVVL [141360 LFCLLVVVVVLMS-RY 1[14F48] LTTVREIETQTELLS It 144I49 TTVREIETQTLS It57 Q-TELLSPGSGRAEEE I[ 141
Tab~eXLVII-V2-HLA-DRBI -0301-]l5mers-191P4D12B J
Each peptide is a portion of SEQID NO: 5; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is the-start position plus fourteen.
[Posj 123456789012345 score][D TVVLGQDAKLPCYR [:jA[]jJVVIVLGQDAKLPCLI 2i72[DIDAKLPCLYRGDSGEQ -1-6D I VTWLGQDAKLPCLY F7J
[TableXLVII-W-HLA-DRBI -0301-l5mers-191P4D12B
Each peptide Is a portion of SEQI0 NO: 15; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.[Ps123456789012345 scorel
[~LHSHHT0PRSQSEEP 17[IRRLHSHHTDP SOS Il1l
LI1RSQSEEPEGRSYSTL 9~ HTDPRSQSEEPEGRSF19
SHHTDPRSQSEEPEG12 PRS-QSEEPEGRSYST138J
1SQSEEPEGRSYSTLT EII81
Tab~eXLVII-Vg9HLA..DRBI -0301-1 Smers-1 91 P40128
00
00
Each peptide is a portion of SEQ IDNO: 19; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide Is the startposition plus fourteen.
[81 GILLRITFNF FLFF251M121 QGVNSCDCERGYFQG 24i
YFYFFLEESYA 23~[61 LAGILLRITFNFFLF7 22[27] AGILLRITNFF [211[91 LFFFLPFPLWFFIY )[211
LLRITFNFF2F0L201 FFF-PFPLW F 20 z
[74 SHYVAQAGLELL-GSS F20L-931 FRFIQCLLLGLLVR )20
9[7 QCLLLGLLVPQ CLLLGLLVPQQ i[Z2G
[161 NFFLFFFLPFPL 1 9[s[241 PFPLWFFIYFY-FYF ][191
IFPLWFFYYFFF F7[ 9h751] GLELLGSS-NPPASAS [19[681 AGTLSVHHAEFIfI[901 KKAFRFIQCLLLGLL] [199[2 AFRFIQCLLLGLLKV [19[1 4 TFNFFLFFPPL [181[26 PLVFYY F -[18.
[29 VFFFFFENE [18)[12RITNFFFFFLPFP [7
221 FLPFPLVVFFIYFYF [17128 WFIFYYFL EM- 1[ 7
[7911 FESFTKRKKKLKKAF 17)[82 FTKRKKKLKKFF 17)
86 KKKLKKAFRFIQGCLL [17)27 LWFFIYFYF FFL 16)
F76] CACFESFTKRKKL [1615AILITNFI9
1 33 15FFLEEHV M41 IEMESHYVAQAGLEL-L 15sI78 C-FESFTKRKKKLKKA[ L-891 LKKAFRFIQCLLLGL )[15)[l11 GVNSCDCEGFI [1511-] FCDCRYQIMA7hF96 IQCLLLGLLVPL [14)
RRLADLITN) a[49 QALLLS9PA
1101 LGLK RPLQHQGV[[13
TabieXLVII-V9-HLA-DRB1 -0301. l5mers-191P4D12B
Each peptide is a portion of SEQ IDNO: 19; each start position Is
specified, the length of peptide Is15 amino acids, and the end.
position for each peptide is the startposition plus fourteen.
[Po 12345678901 2347 [scorel[101 LGLLKVRPLOQGV j[ 13[103 1LLKVRPLQHQGVN-SC]113
36j FYFFLEMVESHYVQA 112F37jYFFLEMESHY-VAQAG)[ 1239 FLEMESHYVAAG E l1252j LELLGSSNPPASA7SL 12
[674 ASLVAGTLSVHHCAC J[ 12[106VRPLQHQGVNSCDCE2
1TableXL VII-VI0HADB-311l5mers-191P4D12B
Each peptide Is a portion of SEQID NO: 21; each start position is
specified, the length of peptide Is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.
[Posj 123456789012345] soe112 GELGTSMVVVVLG-Q 12~[I iAGELGTSDWTL i
LASFTGRCPAGELG 17012]ASFTGRCPA GELGTS 912] FTGROPAGELTD E11A113l ELGTSD-VVTV-vLGQ-D I[TabIeXLVII-V1 I-HLA-DRBI-0301-
1 5mers-191P34D12BEach peptide is a portion of SEQID NO: 23; each start position is
specified, the length of pepfide is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.
[Po 12457801345 Fscr[1 -l]RLRVMVPPLPSLNGLP[2]AGSFQARLRLMp LIP)[2]FPAGSFQARLRLkV-M 7Th[1 2 LRVMVPPLPSLNPGPf141I 13) RVMVPPLPSLNPGPA 14[2]RQARLRLRvmvPPLPS. 13
2]RLRLRVMVPPLPSLN L_1212I SFQARLRLRVMPPL
8 8IALLVVPPLPSLI iMVPPLPSLNPGPA&lEF1
F TableXLVII V1 2-HLA-DRB1-0301-1l15mers-191P4D12B3
Each peptide Is a portion of SEQID NO: 25; each start position Is~lspecified, the length of peptide Is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.[Ps123456789012-34S scorel
[2 CSVMIS E E PEGqCSYST 181[2]SCS VMSEEPEGCSYS1-2
SVMSEEPEGCSYSTL 5505VMSEEPEGCSY ElSEEPEGCSYSTLTTV
TabieXLVII-VI 3-HLA-DRB1-0301-)5mers-191P4D12B
Each peptide Is a portion of SEQID NO: 27; each start position isspecified, the length of peptide Is
15 amino acids, and the endposition for each peptide is the
start position pius fourteen.[Po 123456789012345 scr[10 TVDVLA0PQEDSK ZIP)[2]DSQV1VDVLADPQE 2 2[ii VDVLADPQEDSGKQV[1j 6
TabeXLVII-V1 4-HLA-DRBI-0301-1 Smers-1 91 P401 2B
Each peptide Is a portion of SEQID NO: 29; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide Is the
start position plus fourteen.
g 1I 123456789012345 scor2] GLELL GSSNPPASA 19)
12]LELLGSSNPPA SASL 12)
15 JASLVAGTLSVHHCAC 12[14 ISASLVAGTLSVHHCAil2] LGSSN PPASASLVAG
IMiP-PASASLVAGTLSVH
TableXLVIII-VI-HLA-DRB1-0401 1 Smers-1 91 P4D12B
00
00
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is 15amino acids, and the end position
for each peptide Is the start positionplus fourteen.
[Posl 123456789012345 jIsc~i
1205 TSEFHLVSRM Q 28z~12-99 ITLGFPPLTTEHSGY ]281f 47 DAKLPCFY RGDSGEQ[ 26111621 GQGLTLMASCTAEGS 1L26I2-55 DQNLWHIGREG-AMLK][ 26~3-11 IGIYVCHVSNEFSSRD 1126
1395 ENSIRRLHHTP [261
14-151 SVGLRAE GHPDS LKD 26Z~F4 5 DEGIKQAMNHFVQ-E-N 1261
F-71AEMWGPEALLL 12211 PEAWLLLLLAF ]221
FI501 LPCFYRGDSGEVG] 22IF511 PCFYRGDSEVQ] F221rl180 I SVTWDTEVKGT SSR 22
193 SRSFKHSRS TE] 221241 HVSFLAEASVRGLED 1[22
1358 ALLFCLLVVVM 11223781 TQKYEEELTLTEN F[221
441GRSYSTTVET 1221[13 EAWULLLLST 1201[151 WLLLLLLAFRCI 20111 LLLLLLLAFGC I201I 371 SDVTVVLGQDAKL][7F.591I G EQ VG Q VAWAR-VDAG][ 20
76 iAQELALLHSKYGLHV][F 201871GLHVSPAYGVQ1 201
FI1-111 SVLLRNAVQADEE [201I44 RVLVPPLPLPP [20
F1-] VPPLPSLN AE [201
1184 DTEVKGTfSSRSK- 1201211 SMAVTSEFHLVSR 20i~
M281 GQPLTCWSHPGLLQ] 2011227 HPGLLQQTHL F201
1233 5,5THIHVFLA 12-391 ILHVSFLAVRL]201242 VSFLAESVRGLEIJQ [L20247 EASVRGLEDQLH .[20
251LWHIGREGAMLKCS ]2o
l26] EGAMLKCLSEGQPPP J[ 203021 FPPLTTEHSGIYVCH I[ 20
TableXLVlll-V1-HLA-DRBI-4115mers-191P4D12B
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is 15amino acids, and the end position
for each peptide Is the start positionplus fourteen.
Igos 1234567890124 [oVel1325DSQVTVDVLDPQD 201340 GKQVDLVSASVWG l[ 20
342 QVDLVSASVVVV 201
E34 SASVVVVGVIAALF j[2011R941 SVVWGVIM O 1201352 WGVIAALLFC LLWV Fl20j
I53 VGVIMALLFCL LVWV FI 201357 MALLFCLLWVLM 20Z~13-601 LFCLLVVWVVLMSRY]1201361] FCLLVVVVVLMSRYH][ 201
1364 LWWVVLMSRY HRRK] 20113-68 IVVLMSRYHRRK AQQM[ E~13891 ELTLTRENSIRRLI-S 1 2011424 PDSLKDNSSCSVMSE 274-33 ICSVMSEEPEGRSYST]1[:
1445 YSTLTTVREIEQT ]20]
44-8] LTTVREIETQEL II 20IRj QTELLSPGSGAE 11201479 KQAMNHFVQENGTLR Fl 204-831 NHFVQENGTLRAKPTEIL291 28 1RCPAGELETSDVV1781 i~[29 OPAGELETSDVVT ]181
331 ELETSDVVT:-VLGQD I[ A[38j DVTWLGQDAKLPC ]18[j HVSPAYEGRVEQPPP Ill j.8F1 3 PPRNPLDGSVLRNA jIf LDVLLRNAVQj[ F-18
I 8 LDGSVLLRNA VQAE I[ZiIg1 ADEGEYECRVSTFPA IDiL IN1 GEYECRVSTFPAGS7FF 118
1i RVSTFPAGSFQA RLR 1118PGPALEEGQGLTLAA i
[i§90 -TfSS FHSAAV II 18
M291 QPLTOWVSHPGQ =1 1813081 EH-SGIYVCHVSES]1
Eg CHVSN EFSSR SQVT 18131 N-EFSSRDSQVTVDVL ][18
1 328 VTVDVLDPQEDSGKQF][ 81331 DLQESQV L 8
TableXLVI -1 -HLA-DRB1-0401-l5mers-191P4D12B
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is amino acids, and the end position
for each pep tide Is the start positionplus fourteen.
Posl 123456789012345 re3391 SGKQVDLVSAS-VVVV I[ 1-8133 RYHRRKAQQMTQKYE[ -IF 7
386] YEEELTLTRENSIRR 1[181392 LTRENSIRRLHSHHT][ 7407 DPRSQPEESVLE] F1 814231 HPDSLKDNSSVS] 18i
1435 VMSEEPEGRSYSTLT 1 181449 TTVREIETQTLS I[Z8I441 IETQTELLSPGRAIii1472 EDQDEGIKQAMNHFV 111811341 AGSFQARLRLVV F117113181 SNEFSSRDSQVTVDV 1171[64 QVAWARVDAGEGAE]I
83I HSKYGLHVSP AYEGR ]f162561 QNLWHIGREGMK 16~
1279 SYNWTRLDGPLPSGV[ IF16113101 SGIYVCHVSNEFSS 1[]6
1482 MNHFVQENGTRK] jj176367 WVVLMSRYHRRKQ]
PLSLGAEMWGPAW] 74j76] GAEMWGPAWLLLLL [14[14 AWLLLLLLLAS~fTGR 14.[17 LLLLLLASFTRP F1141
[18 LLLLLASFTGRCPA 114[19 LLLLASFTGRAE114
31j AGELETSDVVTWVLG I~36 T -SDVVTVVLGQDAKL] F14
39q VVTWVLGQDAKLPCF ]IF-14411 TWLGQDAKLPCFYR 3[ 762 jVGQVAWARVDAGEGA][ 14
95 EGRVEQPPPPRNPLD[ JF14111051 RNPLDGSVLL-RNAVQ][ 14LI 1RNAVQADEGEYECRV[ F17[i 261 ECRVSTFPAGSFQARI 1[ 141[140 RLRLRVLVPPLPSLN I. 74[142 RLRVLVPPLPSLNPG [F141[143 LRVLVPPLPSLNPGP I1141[1-56 GPALEEGQLLA IL 4[-164fLTLAASCTAEGSPA 1114
00
00
TableXLVIII-VI -HLA-DRBI .0401 15mers-191 P4D12B
Each peptide Is a portion of SEQ IDNO: 3; each start po 'sition is
specified, theilength of peptide Is 15amino acids, and the end position
Ifor each peptide Is the start positionpius fourteen.
[Pos 1234567890124 scoreI17 8APSVTWDTEVKGTTS F7I1207 EFHLVPSRSM-NGQPL] 74~213 SRSMNGQ-PLTCW-SH][ 1721 LTOWSHPLQQ 1[4~228 PGLLQD-RITHILHV] [14
237 LTHILHVSFA~V ]F 141250 VIRGLEDQNWR] r1 4!265 GALCLRQP 14
268 LKCLSEGQPPPS-YN-W][ i1282 I GPLPGVRVD]7i
DG LPSGVIRVDDTL]j
F290 PSGVRVDGDTLGFPP[14
[Y92GRDDLFPL [4F327 QVTV0VLDPQEDSK[4[3301 VDVLDPQEDs-GKQ-VDJ[ 14[i 8]ASVVWGVIAALLFC ][14i350 VVVVGVIM-ALLFCLL -]1
1356 IAALLFCLLV-VVVVL ][j411362LLVVVVVLMS-RYHR[]14363 LLWWVSYR [141365VVVVLSYRK
387 EEELTLTRENSIRRL Df14398 IRRLHSHHTPSP] 141
142SCSVMSEEPEGRSYS ]1414RITTLS~
TalXVIII-V2-HLA-DRB1 -0401-[Tab e rs 9P4D12B
Each peptide is a portion of SEQ IDNO: 5; each start position is
specified, the length of peptide is 15amino acids, and the end position
for each peptide Is the start positionplus fourteen.
IEos 12345678-9012345 scoejI DAKLPCLRGSE 26~~
[1-3PCLYRGOSGEQVGQV FT2[l1 LPCLYRGDSGEQVGQJ[ 20Li1] VVTVVLGQDAKLPCL ED3 TVLGQDAKLCY 14i
TableXLVIII-V2-HLA-DRB1-0401-1 Smers-1 91 P4D12B
Each peptide is a portion of SEQ 10NO: 5; each start position is
specified, the length of peptide is 15amino acids, and the end position
for each peptide is the start positionplus fourteen.
[Po 124568902345 score
[15 LYRGDSGEQVGQvAW 71j2]
[TableXLVIlk-v7.HLADRBI-0401-]
Each peptide Is a portion of SEQID NO: 15; each start position isspecified, the length of peptide is
15 amino acids, and the endpostion for each peptidle Is the
start position plus fourteen.[E[I 123456789012345-]s~r[D LHSHHTDPRSQSE1p8]I S~ SQ SEE P EG RSYSTLT LF71!
[-2]IRLHSHHTDPRQ 14[12PRSSEEEGSYST12
[TbeXLVI I kV9HLADRB1-0401. JEach peptide is a portion of SEQ ID)
NO: 19; each start position isspecified, the length of peptide is
15 amino acids, and the endiposition for each peptide Is the startposition plus fourtee.
[Po 123456789012345 scr[37 YFFLEMVESHYVAQAG [F 26[86 KKKLKKAFRFIQCLL 1I 26[103 LLKVRPLQHQG-vNS-cJ 26
[2 RITFNFFLFFFLPFP I22117 FFLFFFLPFPLWFF 221[Al YFYFYFFLEME-SHYV][ 221
36I FYFFLEMESHYVAQA] IF22
[7NJ CACFESFTKRKKKLK]IF 22!Lg1 KKAFRFIQCLLLGLL ]22r i1RGYFQDGIFMVQMAAP7WEf 22f
[~RELLAGJLLRITFNF 1120[GILLRITFNFFLFFF [201
161 [NFFLF FFLPFPL VVF [-20]4 SHYVAQAGLELLGSS D
:49 QAGLELLGSSNPPAS 2051_LELSNIAA L2a l
TableXLVIII-V9-HLA-DRB1 -0401-l15mers-191124D1213
Each peptide is a portion of SEQ ID~NO: 19; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is the startposition plus fourteen.
IPos 123456789012345 1FSC70]F931 FRFIQOLLLGLLKvR jF 598 CLLLGLLKVRLQHQ][ [41! EMESHYVAQAGLELL J[ T 8
62J ASASLVAGTLSVHHC IF-181I 73VHHCACFESFTK-RKK 1181
891 LKKAFRFIQCLLLGL 11-18[141 TFNFFLFFFLPFPLV [[F16[15 FNFFLFFFLPFPLW 1L 16![18j FLFFFLPFPLWFFI j-1i6]
[22j FLPFPLWFFYFF [161[28 FFIYFYFYFFLEM J[16
3011 FFIYFYFYFFLES ][16[311 FIYFYFYFFLEMESH 196I 321 IYFYFYFFLEMESHY 1[ 161
3YFYFFLEMESHYVAQ]j[ 16~[43 ESHYVAQAGLELLG-S] [i6
AFRFIQLLLG-L-L-KV J120 ERYFGIMQPW][ 17
[AGILLRITFNFFL-F7FE]D.i[24j PFPLWFFIYFYFYF 14[25j FPLWFFIYFYFYFF 1 14~
LFFIYFYFYFFL 4129j VFFIYFYFYFFLEME [14E439 FLEMESHYVAQAGLE ]~141
52g LELLGSNPSS 1464l ASLVAGTLSVHHCACII.I70I TLSVHHCACFESFTK J[14
[97 QCLLLGLVLQ II 1i4I[100 LLGLLKVRPLQHQGV JIL
Ej LLAGILLRITFNFFL I[ 172El21 FFLPFPLWFFIYFY 12
461 YVAQAGLELLGSSNP][ 12147 VAQAGLELLGSSNPP] IF12!48jAQAGLELLGSSNPPAj[
55 LGS S ASL:VAG]
00
00
TableXLVlIl-V9-HLA-DRBI -0401-1 5ners-1 91 P4012B
rEach peptide Is a portion of SEQ IDNO: 19; each start position Is
specified, the length of peptide isamino acids, and the end
position for each peptide is the startposition plus fourteen. I
[Pos 1234567890124 [scorel[5-61 GSSNPPASASL VAGT I[ 121[57 SSNPPASASLAGLj12
PPASASLVAGTLSVH F-1 j[611 PASASLVAGTLSVH]-iI1-21[661 LVAGTLS-VHHCACFE Jj 1267 VAGTLSV HHCAC FESF 121751 HCACFE-SFTKRKK-KL 111217 ACFESFTKK K [12
F941 RFIQCLLLLLVR 112951 FIQCLLLGLVP 1121
1704] LKVRPLQ GNSDj F-111081PLQHQGVNCD E[ i1714VNSCDCERGYFQGF [12111881 DCERGYF-QGIFMQAA L1211122GYFQGIFMQMPWEG 1112
TabeXLVIII-V1 0-HLA-DRB1 -1T401-15mers-1iM1i 1
Each peptide is a portion of SEQID NO: 21; each start position is
specified, the length of peptide isamino acids, and the end
position for each peptide is thestart position plus fourteen.
[Pos 112345678901-2345 sreRCPAGELTDT r-1-8
[11 AGELGTSVTL 14~I 2] FTGRCPAGELGTSDAF 1j2,
CPAGELG-TSDV'vVV L112 GELGTSDW-MVVLGQ EZ I
TabIeXLVIII-VI 1-HLA-DRB1-10401-l5mers-191 P4D1 28
Each peptide Is a portion of SEQID NO: 23; each start position is
specified, the length of peptide isamino acids, and the end
position for each peptide is thestart position plus fourteen.
[Po0s51 1123456789012345 1score]
TableXLVIII-V1 1-HLA-DRB1-0401-1 Smers-1 91 P401 28
Each peptide Is a portion of SEQID NO: 23; each start position Is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.j
[EIj 123456789012345 so1-[2]AGSFQARLRL MV 171[11 IRLRVMVPPLPLG F71[7jAJLRVMVPPLPSNG 14[2]FPAGSFQARRL MZii[2]GSFQARLRL-RVMVPP 172
ARLRLRVMVPPLS EI12[jI LRLRVMVPPLPSLN
FTableXLIl-V1 2-HLA-DRB1 -0401-5mers-191P4D 128
Each peptide is a portion of SEQID NO: 25; each start position isspecified, the length of peptide Is
15 amino acids, and the endposition for each peptide is theLstart position plus fourteen.
E l12,34567890123457][cr[RI GCSYSTLTTVRE:lET 2I2
CSVMSEEPEGCSS F20SCSVMSEEPEOSYS
[21 IDNSSCSVMSEEPEGC 2[27 VMSEEPEGCSYSTLT2[2]MSEEPEGCSYSTLTT][12[7J EEPEGCSYSTTTR 1[El EPEGCSYSTLTTVE][12
TabIeXLV1II-V1 3-HLA-DRBI-10401-1 5mers-1 91 P401 2B
Each peptide is a portion of SEQID NO: 27; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is theIstart position plus fourteen.
1234567890124 Fsor[gI~TVDVLADPQEDSGKQ F 276
VLADPQEDSGK VO 18i12] DSQVTVDVLADPQED 14
QVTVDVLADPQEDSG 14[D FSSRDSQVTVDVLAD F12[23 ISSRDsQVTVDVLADpI 12[2]SQVTVDVLADPQDS DJ2
14 LADPQDEDSGKVD)LV 12
TabIeXLVIII-V14-HLA-DRB1 -1I 0401-1 Smers-191 P4DI2B J
Each peptide Is a portion of SEQID NO: 29; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.[Pos 123456789012345 ]scorel[2]GLELLGSSNPPASAS [EN[1-3ASASLVAGTLSVHH 8
LELLGSSNPPASS 14[15 ASLVAGTLSVHHCAC[2]LGSSNPPASASLVAG 2[2]GSSNPPASASLVAGT 12j[2]SSNPPASASLVAGTL 1
71 PPASASLVAGTLS-VH] 71
,[12 PASASLVAGTLSVHHjF12
TableXLIX-V1-HLA-DRB1-1 101-115Smers-1 91NP412B3
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide is amino acids, and the end position
for each peptide is the start positionplus fourteen.I
I 123456789012345 Iscore1255 NLHIGRE-MLKI 26279 SYNWTRLDGLSG ]F [12 PEAWLLLLLLA F I2-3120-1]1 SAAVTSEFHLVPSRS 1L.23~
164 QVAWARVAEGQI 22[140 RLRLRVLVPPSL 1122E218 GQPLTCWVSHPGLLQ ll2g123 DQRITH1LHVSFLAE- 1221286 DGPLPSGVRVDGDTL Jf221
29TLGFPPT SI F1221138 LMSRYHRRA J F221
I 37l SDVVTVVLGQDKPf 21112611 IGREGAMLKCLSEGQ 1[21E
13FCLLVVWVLMSRYH 1121lI DAKLPCFYRGDSGEQI1 201
113 AGSFQARLRLRVV 11801 SVWDTEVKGTTSSR IL720365 WWVLMSRYHRRKA fl201
13-861 YEEELTLTRENSIRR 1120[39 LRENSIRRLHSHHT II
00
00
TableXLIX-V1 -HLA-DRBl -1 101-l5mers-191P4D12B
Each peptide is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide Is 15amino acids, and the end position
for each peptide is the start positionplus fourteen.
(Po s 11234567890123451 s ore14F1 SGLRAEGHPDSLKD [20(3471 SASVWVVGVIMALLF [19[3581 ALLFCLLVVVVVLMS IF 9[13 EAWLLLLLLLASFTG ]F718~[161 LLLLLLLASfT GRCP] I8~F76 A Q ELA LL HS KYGL H-V II j1891jSPAYEGRV EQPPPPRI F181
1122 EGEYECRVST-FPAGS] 1l8[T11RVLVPPLPSLNPGPA 11 18]
Fj147 VPPLPSLN-P-GPA-LEE 11812411 HVSFLAEAS-VRGLED 118]
1265 GAMLKCLSEGQPPPS ]jil111 GIYVCHVSNEFSSRD] 118442 GRSYSTLTTVREIET IF18(274 VTSEFHLVPSRSMNG ]7i1-205 TSEFHLVPSRSMNGQ]F173671 VVVLMSRYHRRKAQQ][-171
1190O TTSSRSFKH-SRSAAV I16277 PPSYNWTRLD-G-PLPS 16 71346 VSASVVVVGVIMALL ][76360 LFCLLVVVVVLMSRYJF14871 QENGTLRAKP-TGNGI J[ 161
GAQELALLHSKYGLH]F151Il-0h7] PLOGSVLLRNAVQAD] IF71F17-81 APSVTWDEVGT] F 1711921 SSRSFKHSSAT [151219 QPLTCWSPGLQ 157
(23-01 LLQDQRITLHF 15i343 VDLVSASWVA j-1i5362 CLLWVVWMRH IF- iiF36] LLVVVVVLMSRYHRR [151411 QPEESVGLRAEGHPD 1-5F4- J EGIKQAMNFEG [15
1VEGTRKT 5 i
LLFTCAGEL I[14j LETSDVVTVVLGQ DA l[-14
M61 TSDVVTVVLGQDAKL I[ 14F-411 TVVLGQDAKLPCFYR l[ 141 59 GEQVGQVAARDG j
TableXLIX-V1-HLA-DRBI-1 101-1 5mers-1 91 P4D1 2B
Each peptide Is a portion of SEQ IDNO: 3; each start position is
specified, the length of peptide Is 15amino acids, and the end position
for each peptide is the start positionplus fourteen.
[Pos 1 1234567890124 F Re[61I QVG QVAWA R VDAGEG L-1h][81LLHSKYGLHVSPAYE IF 141
[1381 QARLRLRVL VPPLPSI .1N16 GQGLTLMASCTAEGS114[181 VTWDTEVKGTTSSRS ]D14[184 DTEVKGTTSSRSKH ][14[2271 HPGLLQDQRITHILH 141(2521 GLEDQNLWHIGREG-A][ 12-761 PPPSYNWTR LDGPLP ]Iij
(290 PSGVRVDGDTLGFPP EE(3081 EHSGIYVCHVSNE:FS ][141350 WWVGVIMLLFC7LL ][14135 MLLFCLLVVVVVLM 1411364 LVVVVVLMSRYHRR] 141
397 SIRRLHSHHT DPRSQ ]Li 4F40] LHSHHTDPRS QPEESF 74(420 AEGHPDSLKDNSSCS] 141433 CSVMSEEPEGR-SYST][ 1 I
143 VMSEEPEGRSYSTLT][ 141445 YSTLTTVREI1ETQTE:][ 14454 IETQTELLSPGSRA] 14
1457 QTELLSPGSG EE[14
1479KQAMNHFVENTL] 744831 NHFVQENGTLRAKT i 14111 LLLLASFTGRCPG [13I q VTVVLGQDAKLPCFY DI13
85 JKYGLHVSPAYEGRVE f[ 131 06 NPLDGSVLLRNAVQA Jj[ 313-711 FQARLRLRVLVPLP 13
215j SMNGQPLTCVVSHPG [131237 THILHVSFLAEASVR [_13327 QVTVDVLDPQ DSG 233740 GKQVDLVSASWV [13
I~SVVVVGVFMALLFCL I
411VREIETQTELLS-PGS 11 13DI LSLGAEMWGPEAWLLIF1712
TableXLIX-VI-HLA-DRB1-1 101-I 5mers-1 91 P4D1 2B
Each peptide Is a portion of SEQ IDNO; 3; each start position is
specified, the length of peptide is amino acids, and the end position
for each peptide is the start positionplus fourteen.
[PoI 1234567890124 e[22 LASFTGRCPAGELET F 7
[62 VGQVAWARVDAGEGA 7h[73 GEGAQELALHYG] 12[82 LHSKYGLHVSA E12[83 HSKYGLHVSPAYEGR IF 12[92 PAYEGRVEQPPPPRN 1 121[109 DGSVLLRNAVQADEG ]1 12[11 VLLRNAVQ EEE112[123 GEYEORVSTFPG F 112[141 LRLRVLVPPLSN 12[153 LNIPGPALEEGQ FT ]12[1591 LEEGQGLTLAASCTA 111211764 GLTLAASCTAGP 11121
120 EFHLVPSRSMNGQPL I112]jITHILHVSFLAEASV Jj12
129ILHVSFLAEASVRGL 1_212EASVRGLEDQNLW-HI 12
(26 LKCLSEGQPPPS-YNW 12g(2-92 GVRVDGDTLGFPL 112
(3SGIYVCHVSNEFS 1LJ2I13RDSQVTVDVLPQD] 12
1329 TVDVLD)PQEDSGKQV][ Eg1337 EDSGKQVDLVSASW][ 1213-95 ENSIRRLHSHH TDPR ][1214131 EESVGLRAEGHPDSLI][ j2I421l EGHPDSLKDNSFV] 12
1429 DNSSCSVMSEP F-1-214481 LTTVREIETQT-E-LLS ][F1211455 ETQTELLSIPG SGRAE][ 12(489 NGTLRAKPTGN-GIYI ][12
TableXL1-11V2-HLA-DRB1-1 101-l5mers-191P4D12B
Each peptide is a portion of SEQID NO: 5; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is thestart position plus fourteen.I~o 12345678901 2345-]Scrl
9 DAKLPCLYRGDSE
00
00
1VLGDKLPCLYRI 14
vi-wi-VVVLGQAKLPCLYFj
ITabIeXLIX-W7-HLA-DRBI-1 101 l5mers-191 P4012B
Each peptide is a portion of SEQID NO: 15; each start position isspecified, the length of peptide Is
amino acids, and the endposition for each peptide is the
start position plus fourteen.
[Pos 1123456789012345 scorelIiI1 SIRRLNSHHTDPRS -1-4171 jLH-SHHTOPRSQSEEP 14[14 ISQSEEPEGRSYSTLT 14~
IRRLHSHHTDPRSQSE 8I~[12 PRSQSEEPGSS F78
F21IRRLHSNHTDPRSQS 61
F_ 81HTDIPIRSQISEEPE 61
110 TOPRSQSEEPEGRSY Mfj
TableXLIX-V9-HLA-DRBI-1 101-l5mers-191P4012Bj
Each peptide is a portion of SEQ IDNO: 19; each start position is
specified, the length of peptide isamino adids, and the end
position for each peptide Is the start___position plus fourteen.
7PosI 12345678024 scorel
97 QCLLLGLLKVRP LQH 28[1_211RGYFQG:F MQMAPWE 22~
[37 YFFLEMESHYVAQAG I] 21![79 FESFTKRKLKFI 21
[76CCEFKKKK1 201[1_03 ILLKVRPLQHQG-VNS-C] 20
221 FLPFPLVFIFF] 19[17j FFLFFFLPFPLWFF F1_i.491 QAGLELLGSSNPPAS [Ir
7.66I LVAGTLSVHAF [jF51F FYFYFFLE MESHYVAF1117!
FKKFRFIQCLLLGLL 7
F[120 ER GY F QGIFMQAAP-W][ 171'FNFFLFFFLPFPLWV ][16
33 YFYFYFFLEMESHYV lE 161[36 FYF FLEMESHYVAQA] 16
161KKKLKKFICL] 1532 RELLAGILIFF]T41ELLAGILLRITFNFF ][14
Tab~eXLIX-V9-HLA-DRB1 -1101 -11 Smers-191 P40128
Each peptide Is a portion of SEQ IDNO: 19; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each peptide is the startI position plus fourteen.
[Pos [123456789012345- [coreI[7VAGTLSVHHCACFES[14[3TKRI<KKLKKAFRFIQ][ 141IiHQGVNSCDCERGYFQ][ 14
[26j PLWFFIYFYFYFFL] 13]
F61] PASASLVAGTLSV7HH 13I93 FRFIQCLLLGLLKVR 1398 CLLLGLLKVRPLQQ D__13
TbIeXLIX-VI 0-HLA-DRBI-1 101-[T 15mers-191P4D128
Each peptide Is a portion of SEQID NO: 21; each start position isspecified, the length of peptide is
1amino acids, and the endposition for each peptide Is the
start position plus fourteen.jEgF 123456789012345 I crjj1IjJLGTSDVVTWLGQDA 4
72LASFTGRCPAGELGT 1T2[gELGTSDVVTVWLG FZ9I[11 LLASFTGRCPAGELGiii7
S-FT GR C P A GELG TSD 137[3 TGRCPAGELGTSDW 16
R RCP A GE LG TSDVVT VL
I ]BAGELGTSDYVVTWLG E96
[TableXLIX-V1 1 -HLA-DR1-1101-l5mners-191P4D12B
Each peptide is a portion of SEQID NO: 23; each start position Isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.Pos 12345 6789012 345 Fs-o-e
[3RLRLRVMVPPLPSLN Ii[3AGSFQARLRLRVMVP LI
DI 3VVPPLPP 18
7[QRLRLRV MVPPLPSE]I
I~ F FQRLRLRVMVPPLP L-ii3
7FFPAGSFQARLRLV Zi1P
TabIeXLIX-V12-HLA-DRB1-1 101-1l5mers-191P4012B37
Each peptide is a porton of SEQID NO: 25; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.
Posj 123456789012345 I score[14 GCSYSTLT1VREE ZIP][3 DNSSCSVMSEEPEGCI 172~[31CSVMSEEPEGCSYST 1
NSSCSVMSEEPEGCS Lii
LTabIeXLIX-V13-HLA-DRB1-1 1011 Smers-1 91 P02
Each peptide is a portion of SEQID NO: 27; each start position isspecified, the length of peptide is
15 amino acids, and the endposition for each peptide is the
start position plus fourteen.
[Ps 23456789012345 e
[3 jDSQVTVDVLADPQED F-7
I QVTVDVLAD)PQEDSG II3[10 TVDVLADPQEDSK 12I[illVDVLADPQEDSGKV i[3 SRDSQVTVDVADPQ IF 17[m jADPQEDSGKQVDLVS DI
STabIeXLIX-V14-HLA-DRB1-1 101-1 Smers-1 91P4031 2BEach peptide is a portion of SEQID NO: 3; each start position is
specified, the length of peptide is15 amino acids, and the end
position for each pepide is thestart position plus fourteen.
[Pos 123456789012345 Iscre[12 PASASLVAGTLSVHHjF_ 1I3I 71GLELLGSSNPPASAS
I LELLGSSNPPASASLF-121[[EIiiPPASASLV TLH 11F3 8SSNPPASASLVAGTL I 14 SASLVAGTLSVIIO 13fI AGLELLGSSNPP-ASA E31
E3 ELLGSSNPPAAL 116[3 LLGSSNPPASASLA 1[3 jSNPPASASLVAGTS161[Is ASLVAGTLSVH=HCAC 136
Table L: Properties of 191P4D12(b)
00
00
Ig1P4D12(b)B v.1ORFProtein lengthTransmembrane region
Signal PeptidePIMolecular weightLocalization
Motifs
BioinformaticProgramORF finder
TM PredHMMTopSosulTMHMMSignal Pp1/MW toolp1/MW toolPSORT
PSORTI11PfamPrints
Blocks
http:Ilwww.ch.embnet.org/hftp://www.enzim.hulhmmtop/http:Ilwww.genome.ad.jp/SOSuiIhftp://www.cbs.dtu.dk/servicesTMHMMhttp:Ilwww.cbs.dtu.dkservices/SignaIP/hftp://www.expas y.ch/tools/http://www.expasy.ch/tools/http:/Ipsort.nibb.ac.jp/
httpJ/psor~nibb.ac.jp/http://www.sanger.ac.uk/Pfam/http:llwww.biochem.ucl.ac.uk/
http:/Iwww.blocks.fhcrc.org/
Outcome264-1796
2 TM, aa 14-30, 351 -3701 TM, aa 347-3712 TM, aa 14-31, 347-3691 TM, aa 350-372yes, cleaved aa 31-32pl 5.2755.4 kDa46% plasma membrane39.1 cytoplasmic, 21 nuclearImmunoglobulin domainCadherin signatureIg domain, Herpesviwusglycoprotein D
Bioinformaticv.6 Program URL OutcomeORF ORE finderProtein lengthTransmembrane region
Signal PeptidepIMolecular weightLocalization
Motifs
TM PredHMMTopSosuiTMHMMSignal Pp1/MW toolp1/MW toolPSORT
PSORT 11PfamPrints
Blocks
http://www.ch.embnetorg/http:/lwww.enzim.hulhmmtop/http://www.genome.ad.jp/SOSuV/http://www.cbs.dtu.dk/servicesrrMHMMhttpJ/www.cbs.dtu.dk/services/SignaIP/http://www.expasy.ch/toolsIhttpJ/www.expasy.ch/tools/http://psort.nibb.ac.jp/
http://psort.nibb.ac.jp/http://www.sanger. ac.uk/Pfam/http://www.biochem.ucl.ac.ukl
http:f/www.blocks fiicrc-org/
295 asI TM, aa 135-1561 TMV, aa 132-1561 TM, aa 132-1541 TM, aa 135-157nonepl 5.2832.6 k~a70% plasma membrane,20% endoplasmic reticulum39% cytoplasmic, 21%nuclearImmunoglobulin domainnone
Herpesvirus glycoprotein D
00
00
Table LI: Exon boundaries of transcript 191 P4D12(b) v.1
Exon Number Start End Length
1 2 342 341
2 343 702 360
3 703 993 291
4 994 1114 12111115 1263 149
6 1264 1420 157
7 1421 1496 76
8 1497 1571
9 1572 3459 1888
Table UlI(a). Nucleotide sequence of transcript variant 191 P4DI 2(b) v.6 (SEQ ID NO: 105)ggccgtcgttacggcttctttcccctagtgcagttccttaagctggagact ctaccgagggcgaaggcgccttacgagggtcctgcgcaa.ccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggcctgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtCCCtgggttgggcctgCtaatactgctCtgtatttttttcaggctggc
gttggccacagggggtagctgagacccaagttcaagtctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggctgagagagtgaagagac agac tgaaaggcatcaaacacgggcaatccttccctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactcc
gcgtgggaagacggctgggttgcgagaggcctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtcaca ttggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgc cgagggc ccccgagggccctgctgtctccaggc catgaggcatctacagcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttcct tgaactgtattttctgtattaattttttatttttattttgggCtcaag
cagctctggggtgtagaacgaagaactctgcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttCtggtggtcccagaaatacccatcacacaccctgataggcagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagatt cgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcct
ggagctcggagggccggggccagcttcctgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgCCtCCCCC tggCagcCCggtcaaaggcagagttccacc cat c ctgg ctgaggcctcttatgctcaagtgggcctctgcac tgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagt caggagaatgggacacctgatgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggt ttggagctggagggcaagtgtCtCtgCCCtCCgCCgggagcttcttgccctatggagtctccCt cagocct
gctcccgatctggggctgggccttctgggtc ccgcgggtgC tgcC Ctgc tgtggacgcgggtgagcccggggCtcagtgcagcaccttccctgccctcactcctgcacagacaacgtccattggtgcctactgctccagggtgaggggcctgcctgagtgcccagtggggagcggcatctgtggatgttcgtggtggtggctcatgtcccctgaccctgaagccagccggaacagtagctacggtgaggggaggaggaaggggaccctacgtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagc
120180240300360420480540600660720780840900960
102010801140120012601320138014401500156016201680174018001860192019802040210021602220228023402400246025202580
tgggacttta agtgtacacc actgtgcctg ctttgaatcc tttacgaaga gaaaaaaaaa 2640
attaaagaaa gcctttagat ttatccaatg tttactactg ggattgctta aagtgaggCC 2700
cctccaacac cagggggtta attcctgtga ttgtgaaagg ggCtacttcc aaggcatctt 2760
00 catgcaggca gccccttggg agggcacctg agagctggta gagtctgaaa ttagggatgt 2820
C) gagcctcgtg gttactgagt aaggtaaaat tgcatccacc attgtttgtg ataccttagg 2880
C) gaattgcttg gacctggtga caagggctcc tgttcaatag tggtgttggg gagagagaga 2940
gcagtgatta tagaccgaga gagtaggagt tgaggtgagg tgaaggaggt gctgggggtg 3000Sagaatgtcgc ctttccccct gggttttgga tcactaattc aaggctcttc tggatgtttc 3060
tctgggttgg ggctggagtt caatgaggtt tatttttagc tggcccaccc agatacactc 3120
agccagaata cctagattta gtacccaaac tcttcttagt ctgaaatctg ctggatttct 3180
ggcctaaggg agaggctccc atccttcgtt ccccagccag cctaggactt cgaatgtgga 3240
gcctgaagat ctaagatcct aacatgtaca ttttatgtaa atatgtgcat atttgtacat 3300aaaatgatat tctgttttta aataaacaga caaaacttga aaaa 3344
Table 1.lll(a). Nucleotide sequence alignment of 191P4D12(b) M. (SEQ ID NO: 106) and 19113012(b) v.6 (SEQ ID NO:107).
ci V.1 1 gGCCGTCGTTGTTGGCCACAGCGTGGGAAGCAGCTCTGGGGGAGCTCGGA
ci V.6 1 ggccgtcgttgttggccacagcgtggaagcagctctgggggagctcgga 00
V.1 51 GCTCCCGATCACGGCTTCTTGCGGGTAGCTACGGCTGGGTGTGTAGAACG 100
ci V.6 51 gctcccgatcacggcttcttgggggtagctacggctgggtgtgtagaacg 100
V.1 101 GGGCCGGGGCTGGGGCTGGGTCCCCTAGTGGAGACCCAAGTGCGAGAGGC 150
V.6 101 gggccggggctggggctgggtcccctagtggagacccaagtgcgagaggc 150
V.1 151 AAGAACTCTGCAGCTTCCTGCCTTCTGGGTCAGTTCCTTATTCAAGTCTG 200
V.6 151 aagaactctgcagcttcctgccttctgggtcagttccttattcaagt-- 197
V.1 201 CAGCCGGCTCCCAGGGAGATCTCGGTGGAACTTCAGAAACGCTGGGCAGT 250
V.6 197
V.1 251 CTGCCTTTCAACCATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG 300
V.6 197
V.1 301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGC 350
V.6 ctgctactgctggcatcatttacaggccggtgc 230
V. 1 351 CCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCA 400
V. 6 231 cccgcgggtgagctggagacctcagacgtggtaactgtggtgctgggcca 280
V. 1 401 GGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGG 450
V. 6 281 ggacgcaaaactgccctgcttctaccgaggggactccggcgagcaagtgg 330
V. 1 451 GGCAAGTGGCATGGGCTCGGGTGGACGCGGGCGAAGGCGCCCAGGAACTA 500
V.6 331 ggcaagtggcatgggctcgggtggacgcgggcgaaggcgcccaggaacta 380
v.1 501 GCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGGCTTACGAGGG 550
V.6 381 gcgctactgcactccaaatacgggcttcatgtgagcccggcttacgaggg 430
V.1 551 CCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC 600
235
V.6 431 ccgcgtggagcagccgccgcccccacgcaaccccctggacggctcagtgc 480
00 V.1 601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTC 650
V.6 481 tcctgcgcaacgcagtgcaggcggatgagggcgagtacgagtgccgggtc 530
V.1 651 AGCACCTTCCCCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCT 700
S V.6 531 agcaccttccccgccggcagcttccaggcgcggctgcggctccgagtgct 580
V.1 701 GGTGCCTCCCCTGCCCTCACTGAATCCTGGTCCAGCACTAGAAGAGGGCC 750
V.6 581 ggtgcctcccctgccctcactgaatcctggtccagcactagaagagggcc 630
V.1 751 AGGGCCTGACCCTGGCAGCCTCCTGCACAGCTGAGGGCAGCCCAGCCCCC 800
ri V.6 631 agggcctgaccctggcagcctcctgcacagctgagggcagcccagccccc 680
V.1 801 AGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCAGCCGTTCCTT 850
00 V.6 681 agcgtgacctgggacacggaggtcaaaggcacaacgtccagccgttcctt 730
V. 1 851 CAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA 900
V.6 731 caagcactcccgctctgctgccgtcacctcagagttccacttggtgccta 780
V.1 901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGC 950
V.6 781 gccgcagcatgaatgggcagccactgacttgtgtggtgtcccatcctggc 830
V. 1 951 CTGCTCCAGGACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGC 1000
V.6 831 ctgctccaggaccaaaggatcacccacatcctccacgtgtccttccttgc 880
V.1 1001 TGAGGCCTCTGTGAGGGGCCTTGAAGACCA-AAATCTGTGGCACATTGGCA 1050
'V.6 881 tgaggcctctgtgaggggccttgaagaccaaaatctgtggcacatcggca 930
V.1 1051 GAGAAGGAGCTATGCTCAAGTGCCTGAGTGAAGGGCAGCCCCCTCCCTCA 1100
V.6 931 gagaaggagctatgctcaagtgcctgagtgaagggcagccccctccctca 980
V.1 1101 TACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGGTACGAGTGGA 1150
V.6 981 tacaactggacacggctggatgggcctctgcccagtggggtacgagtgga 1030
V.1 1151 TGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT 1200
V.6 1031 tggggacactttgggctttcccccactgaccactgagcacagcggcatct 1080
V.1 1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACT 1250
V.6 1081 acgtctgccatgtcagcaatgagttctcctcaagggattctcaggtcact 1130
V.1 1251 GTGGATGTTCTTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGT 1300
V.6 1131 gtggatgttcttgacccccaggaagactctgggaagcaggtggacctagt 1180
V. 1 1301 GTCAGCCTCGGTGGTGGTGGTGGGTGTGATCGCCGCACTCTTGTTCTGCC 1350
V.6 1181 gtcagcctcggtggtggtggtgggtgtgatcgccgcactcttgttctgcc 1230
V.1 1351 TTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCC 1400
V.6 1231 ttctggtggtggtggtggtgctcatgtcccgataccatcggcgcaaggcc 1280
00 V.1 1401 CAGCAGATGACCCAGAAATATGAGGAGTGAGCTGACCCTGACCAGGGAGAA 1450
S V.6 1281 cagcagatgacccagaaatatgaggaggagctgaccctgaccagggagaa 1330
V.1 1451 CTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG 1500
VA6 1331 ctccatccggaggctgcattcccatcacacggaccccaggagccagccgg 1380
V.1 1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGAC 1550
V.6 1381 aggagagtgtagggctgagagccgagggccaccctgatagtctcaaggac 1430
V.1 1551 AACAGTAGCTGCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTC 1600
V.6 1431 aacagtagctgctctgtgatgagtgaagagcccgagggccgcagttactc 1480
V.1 1601 CACGCTGACCACGGTGAGGGAGATAGAAACACAGACTGAACTGCTGTCTC 1650
S V.6 1481 cacgctgaccacggtgagggagatagaaacacagactgaactgctgtctc 1530
(1 V.1 1651 CAGGCTCTGGGCGGGCCGAGGAGGAGGAAGATCAGGATGAAGGCATCA 1700
V.6 1531 caggctctgggcgggccgaggaggaggaagatcaggatgaaggcatcaaa 1580
V.1 1701 CAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTACGGGCCAAGCC 1750
V.6; 1581 caggccatgaaccattttgttcaggagaatgggaccctacgggccaagcc 1630
V.1 1751 CACGGGCAATGGCATCTACATCAATGG7GCGGGGACACCTGGTCTGACCA 1800
V.6 1631 cacgggcaatggcatctacatcaatgggcggggacacctggtctgaccca 1680
V.1 1801 GGCCTGCCTCCCTTCCCTAGGCCTGGCTCCTTCTGTTGACATGGGAGATT 1850
V.6 1681 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagatt 1730
V.1 1851 TTAGCTCATCTTGGGGGCCTCCTTA-AACACCCCCATTCTTGCGGAAGAT 1900
V.6 1731 ttagctcatcttgggggcctccttaaacacccccatttcttgcggaagat 1780
V.1 1901 GCTCCCCATCCCACTGACTGCTTGACCTTTACCTCCAACCCTTCTGTTCA 1950
V.6 1781 gctccccatcccactgactgcttgacctttacctccaacccttctgttca 1830
V.1 1951 TCGGGAGGGCTCCACCAATTGAGTCTCTCCCACCATGCATGCAGGTCACT 2000
V.6 1831 tcgggagggctccaccaattgagtctctcccaccatgcatgcaggtcact 1880
V.1 2001 GTGTGTGTGCATGTGTGCCTGTGTGAGTGTTrGACTGACTGTGTGTGTGTG 2050
V.6 1881 gtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactgtgtgtgtgtg 1930
V.1 2051 GAGGGGTGACTGTCCGTGGAGGGGTGACTGTGTCCGTGGTGTGTATTATG 2100
VA6 1931 gaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg 1980
V.1 2101 CTGTCATATCAGAGTCAAGTGAACTGTGGTGTATGTGCCACGGGATTTGA 2150
V.6 1981 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttga 2030
V.1 2151 GTGGTTGCGTGGGCAACACTGTCAGGGTTTGGCGTGTGTGTCATGTGiGCT 2200
00 V.6 2031 gtggttgcgtgggcaacactgtcagggtttggcgtgtgtgtcatgtggct 2080
V.1 2201 GTGTGTGACCTCTGCCTGAAAAAGCAGGTATTTTCTCAGACCCCAGAGCA 2250
V. 6 2081 gtgtgtgacctctgcctgaaaaagcaggtattttctcagaccccagagca 2130
V.1 2251 GTATTAATGATGCAGAGGTTGGAGGAGAGAGGTGGAGACTGTGGCTCAGA 2300
V. 2131 gttatagaagtggaaagga acggtaa 2180
V.1 230 CCCAGGGTGCGGCATAGCGGAGCTII ATIIIIIICGIITGIIIG 235V.6 2181 cccaggtgtgcgggcatagctggagctggaatctgcctccggtgtgaggg 2230
CI V.1 2351 AACCTGTCTCCTACCACTTCGGAGCCATGGGGGGCAAGTGTGAAGCAGCCA 2400
V.6 2231 aacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca 2280
00 V.1 2401 GTCCCTGGGTCAGCCAGAGGCTTGAACTGTTACAGAAGCCCTCTGCCCTC 2450
V.6 2281 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctc 2330
V.1 2451 TGGTGGCCTCTGGGCCTGCTGCATGTACATATTTTCTGTAAATATACATG 2500
V.6 2331 tggtggcctctgggcctgctgcatgtacatattttctgtaaatatacatg 2380
V.1 2501 CGCCGGGAGCTTCTTGCAGGAATACTGCTCCGAATCACTTTTAATTTTTT 2550
V.6 2381 cgccgggagcttcttgcaggaatactgctccgaatcacttttaatttttt 2430
V.1 2551 TCTTTTTTTTTTCTTGCCCTTTCCATTAGTTGTATTTTTTATTTATTTTT 2600
V.6 2431 tcttttttttttcttgccctttccattagttgtattttttatttattttt 2480
V.1 2601 ATTTTTATTTTTTTTTAGAGATGGAGTCTCACTATGTTGCTCAGGCTGGC 2650
V.6 2481 atttttatttttttttagagatggagtctcactatgttgctcaggctggc 2530
V.1 2651 CTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCTCCCTAGTAGC 2700
V.6 2531 cttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc 2580
V.1 2701 TGGGACTTTAAGTGTACACCACTGTGCCTGCTTTGAATCCTTTACGAAGA 2750
V.6 2581 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaaga 2630
V.1 2751 GAAAAAAATTAAAGAAAGCCTTTAGATTTATCCAATGTTTACTACTG 2800
V.6 2631 gaaaaaaaaaattaaagaaagcctttagatttatccaatgtttactactg 2680
V.1 2801 GGATTGCTTAAAGTGAGGCCCCTCCAACACCAGGGGGTTAATTCCTGTGA 2850
V.6 2681 ggattgcttaaagtgaggcccctccaacaccagggggttaattcctgtga 2730
V. 1 2851 TTGTGAAAGGGGCTACTTCCAAGGCATCTTCATGCAGGCAGCCCCTTGGG 2900
V.6 2731 ttgtgaaaggggctacttccaaggcatcttcatgcaggcagccccttggg 2780
V.1 2901 AGGGCACCTGAGAGCTGGTAGAGTCTGAAATTAGGGATGTGAGCCTCGTG 2950
V.6 2781 agggcacctgagagctggtagagtctgaaattagggatgtgagcctcgtg 2830
238
V.1 2951 GTTACTGAGTAAGGTAAAATTGCATCCACCATTGTTTGTGATACCTTAGG 3000
00 V.6 2831 gttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg 2880
V.1 3001 GAATTGCTTGGACCTGGTGACAAGGGCTCCTGTTCAATAGTGGTGTTGGG 3050
V.6 2881 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggg 2930
V.1 3051. GAGAGAGAGAGCAGTGATTATAGACCGAGAGAGTAGGAGTTGAGGTGAGG 3100
S V.6 291gagagagagagcagtgattatagaccgagagagtaggagttgaggtgagg 2980
V.1 30 TGAAGGAGGTGCTGGGGGTGAGAATGTCGCCTTTCCCCCTGGGTTTTGGA 3150
V.6 981tgaaggaggtgctgggggtgagaatgtcgcctttccccctgggttttgga 3030
V.1 151TCACTAATTCAAGGCTCTTCTGGATGTTTCTCTGGGTTGGGGCTGGAGTT 3200
V6 3031 tcactaattcaaggctcttctggatgtttctctgggttggggctggagtt 3080
00S V.1 3201 CAATGAGGTTTATTTTTAGCTGGCCCACCCAGATACACTCAGCCAGAATA 3250
C] V.6 3081 caatgaggtttatttttagctggcccacccagatacactcagccagaata 3130
V.1 3251 CCTAGATTTAGTACCCAAACTCTTCTTAGTCTGAAATCTGCTGGATTTCT 3300
V.6 3131 cctagatttagtacccaaactcttcttagtctgaaatctgctggatttct 3180
V.1 3301 GGCCTAAGGGAGAGGCTCCCATCCTTCGTTCCCCAGCCAGCCTAGGACTT 3350
V.6 3181 ggcctaagggagaggctcccatccttcgttccccagccagcctaggactt 3230
V.1 3351 CGAATGTGGAGCCTGAAGATCTAAGATCCTAACATGTACATTTTATGTAA 3400
V.6 3231 cgaatgtggagcctgaagatctaagatcctaacatgtacattttatgtaa 3280
V.1 3401 ATATGTGCATATTTGTACATAAAATGATATTCTGTTTTTAAATAAACAGA 3450
V.6 3281 atatgtgcatatttgtacataaaatgatattctgtttttaaataaacaga 3330
V.1 3451 CAAAACTTGaaaaa 3464
V.6 3331 caaaacttgaaaaa 3344
Table LiV(a). Peptide sequences of protein coded by 191P4012(b) v.6 (SEQ ID NO: 108)NNGQPLTCVV SHPGLLQDQR ITHILHVSFL AEASVRGLED QNLjWHIGREG AMLKCLSEGQ PPPSYNWTRL DGPLPSGVRV DGDTLGFPPL TTEHSGIY'VC IiVSNEFSSRfl SQVTVDVLDP 120QEDSGKQVDL VSASVVVVGV IAALLFCLLV VVVVLMSRYH RRKAQQMTQK YEEELTLTRE 180NSIRRLHSHH TDPRSQPEES VGLRAEGHPD SLKDNSSCSV MSEEPEGRSY STLTTVREIE 240
TQTELLSPGS GRAEEEEDQD EGIKQAMNHF VQE1NGTLRAK PTGNGIYING RGHLV 295
Table LV(a). Amino acid sequence alignment of 19113012(b) M. (SEQ ID NO: 109) and 191P4D12(b) v.6 (SEQ ID NO:110)V.1 216 MNGQPLTCVVSHPGLLQDQRITHILHVSFLAEASVRGLEDQNLWHIGREG 265
V.6 1 MNGQPLTCVVSHPGLLQDQRITHILHVSFLAEASVRGLEDQNLWHIGREG
V.1 266 AMLKCLSEGQPPPSYNWTRILDGPLPSGVRVDGDTLGFPPLTTEHSGIYVC 315
V. 6 51 AMLKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTLGFPPLTTEHSGIYVC 100
V. 1 316 1VSNESSRflQVTVDVLDPQEDSGKQVDLVSASvvvVGVIAALLFCLLV 365
239
I 1 1 I1 1 1 1 I1 1 11 1 Ii I1 11 1 IIIIIIIIIIIIIIIII II II I II V.6 101 IIVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASVVVVGVIAAIJLFCLLV
V.1 366 VVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRRLHSHHTDPRSQPEES
V.6 151 VVVVLMSRYHRRKAQQMTQKYEEELTIJTRENSIRpTRSHHJTDPRSQPEES
V. 1 416 VGLRAEGH-PDSLKNSSCSVMSEEPEGRSYSTLTT=REIETQTELLSPGS
V.6 201 VGLRAEGHPDSLKDNSSCSVMSEEPEGRSYSTLTI'VREIETQTELLSPGS
V.1 466 GRAEEEEDQDEGIKQAHFVQENGTLRAkKPTOGIYINGRGHLV
V.6 251 GRAEEEEDQDEGIKQAVNHFVQENGTLRAJCPTGNGIYINGRGHLV
150
415
200U
465
250
Table 111(b). Nucleotide sequence of transcript variant 191 P4DI 2(b) v.7 (SEQ ID NO:ggccgtcgttacggcttctttcccctagtgcagttccttagc tgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcata cc aaagga tttgaagaccaaagggcagcct acgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaagagcccgactgaactgcttcaaacaggcgcaatggcatcc taggcctyaacaccCCCacaacccttcttcactgtgtggtgactgtcccaagtgaactggtttggcgttcagaccccatcagacccaggtctcctaccagaggcttgatacatattttcacttttaattttttattttactcctgggcacaccactgt
gttggccacagggggt agc tgagacccaagttcaagtctgctgcctttcagctgctgctgctcagacgtgggact ccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccgggggccgcagtgtctccaggccatgaaccatctacatcaatgctccttctgtttcttgcgggttcatcgggtgtgcatgtggtggaggggtgtggtgtatggtgtgtcatggagcagtattgtgtgcgggcacttcggagcactgttacagCtgtaaatatttttttcttttatttttttttcaagcaatcgcctgctttg
gcgtgggaagacggctgggt
tgcgagaggccagccggctcaccatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttCtccacgtgtcacattggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcatttactccacgctctgggcgggtttgttcagggggcggggacttgacatgggaagatgctccagggctccactgcctgtgtggactgtgtcctgccacgggatggctgtgtgaatgatgcagatagctggagCatgggggcaaagccctctgacatgcgccgtttttttctttagagatggaCtcctgcctcaatcctttac
cagctctggggtgtagaacgaagaactctgccagggagattgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacactgaccacggtccgaggaggaagaatgggacacctggtctgagattttagcccatcccactcaattgagtcagtgttgactgtggtgtgtatttgagtggttgacctctgcaggt tggaggctggaatctgagtgtgaagcccctctggtgggagcttcttgccCtttccagtctcactatagcctccctagaagagaaaa
ggagctcggagggccggggccagcttcctgctcggtggaaagccgagatgaggccggtgcggacgcaaaaatgggctcggc ggg ct t catccccctggacgtgccgggtcggtgCCtCCCcctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcac tgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccagggagggagataggaagatcagcctacgggccacccaggccttcatcttggggactgcttgatctcccaccagactgtgtgtttatgctgtctgcgtgggcaCtgaaaaagcagagaggtggcctccggtgtagccagtcccgcctctgggcgcaggaatacttagttgtatgttgctcagggtagctgggaaaaaaattaa
111)gctcccgatctggggctgggcc tt ctgggtcttcagaaactgggggcctgCCCgCgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccctgccctcactcctgcacagacaacgtccattggtgcctac tgctccagggtgaggggcctgcctgagtgcccagtggggagcggcatctgtggatgttcgtggtggtggctcatgtcccctgaccctgaagccagagtgg~aacacagagatgaaggcaaagcccacgggCCtCCCttCggcctccttaCCtttacctctgcatgcagggtgtggaggga tat cagag tacactgtcagaggtattttcagactgtggcgagggaaccttgggtcagccctgctgcatgtgctccgaattttttatttaCtggcct tgactttaagtgtagaaagcctt
120180240300360420480540600660720780840900960
10201080114012001260132013801440150015601620168017401800186019201980204021002160222022802340240024602520258026402700
tagatttatc caatgtttac tactgggatt gcttaaagtg aggcccctcc aacaccaggg 2760ggttaattCc tgtgattgtg aaaggggcta cttccaaggc atcttcatgc aggcagcccc 2820ttggagggc acctgagagc tggtaga~tc tgaaattagg gatgtgagcc tcgtggttac 2880
00 tgagtaaggt aaaattgcat ccaccattgt ttgtgatacc ttagggaatt gcttggacct 2940ggtgacaagg gctcctgttc aatagtggtg ttggggagag agagagcagt gattatagac 3000
S cgagagagta ggagttgagg tgaggtgaag gaggtgctgg gggtgagaat gtcgcctttc 3060S cccctgggtt ttggatcact aattcaaggc tcttctggat gtttctctgg gttggggctg 3120
gagttcaatg aggtttattt ttagctggcc cacccagata cactcagcca gaatacctag 3180S atttagtacc caaactcttc ttagtctgaa atctgctgga tttctggcct aagggagagg 3240S ctcccatcct tcgttcccca gccagcctag gacttcgaat gtggagcctg aagatctaag 3300
atcctaacat gtacatttta tgtaaatatg tgcatatttg tacataaaat gatattctgt 3360S ttttaaataa acagacaaaa cttgaaaaa 3389
Table 1-11(b). Nucleotide sequence alignment of 191P4D12(b) v.1 (SEQ ID NO: 112) and 191P4D12(b) v.7 (SEQ ID NO:113)V.1 1 gGCCGTCGTTGTTGGCCACAGCGTGGGAAGCAGCTCTGGGGGAGCTCGGA s0
V.7 1 1111111111111111ggaacacttgggagtcga
00 .1 51 GCTCCCGATCACGGCTTCTTGGGGGTAGCTACGGCT(GQTGTGTAGAACG 100
S V.7 51 gctcccgatcacggcttcttgggggtagctacggctgggtgtgtagaacg 100
V. 1 2.01 GGGCCGGGGCTGGGGCTGOGTCCCCTAGTGGAGACCCAAGTGCGAGAGGC 150
V.7 101 gggccggggctggggctgggtcccctagtggagacccaagtgcgagaggc 150
V.1 151 AAGAACTCTGCAGCTTCCTGCCTTCTGGGTCAGTTCCTTATTCAAGTCTG 200
V.7 151 aagaactctgcagcttcctgccttctgggtcagttccttattcaagtctg 200
V.1 201 CAGCCGGCTCCCAGGGAGATCTCGGTGGAACTTCAGAAACGCTGGGCAGT 250
V.7 201 cagccggctcccagggagatctcggtggaacttcagaaacgctgggcagt 250
V.1 251 CTGCCTTTCAACCATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG 300
V.7 251 ctgcctttcaaccatgcccctgtccctgggagccgagatgtgggggcctg 300
V.1 301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGC 350
V.7 301 aggcctggctgctgctgctgctactgctggcatcatttacaggccggtgc 350
V.1 351 CCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCA 400
V.7 351 cccgcgggtgagctggagacctcagacgtggtaactgtggtgctgggcca 400
V.1 401 GGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGG 450
V.7 401 ggacgcaaaactgccctgcttctaccgaggggactccggcgagcaagtgg 450
V. 1 451 GGCAAGTGGCATGGGCTCGGGTGGACGCGGGCGAAGGCGCCCAGGAACTA 500
V.7 451 ggcaagtggcatgggctcgggtggacgcgggcgaaggcgcccaggaacta 500
V.1 501 GCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGGCTTACGAGGG 550
V.7 501 gcgctactgcactccaaatacgggcttcatgtgagcccggcttacgaggg 550
V.1 551. CCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC 600
V.7 551 ccgcgtggagcagccgccgcccccacgcaaccccctggacggctcagtgc 600
V.1 601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTC 650
00 V.7 601 tcctgcgcaacgcagtgcaggcggatgagggcgagtacgagtgccgggtc 650
S V.1 651 AGCACCTTCCCCGCCGGCAGCTTCCAGGCGCGGCGCGGCTCCGAGTGCT 700
S V.7 651 agcaccttccccgccggcagcttccaggcgcggctgcggctccgagtgct 700
V.1 701 GGTGCCTCCCCTGCCCTCACTGAATCCTGGTCCAGCACTAGAAGAGGGCC 750
V.7 701 ggtgcctcccctgccctcactgaatcctggtccagcactagaagagggdc 750
V.1 751 AGGGCCTGACCCTGGCAGCCTCCTGCACAGCTGAGGGCAGCCCAGCCCCC 800
V.7 751 aggcgccgcgcctcaacgggaccgcc 800
V.1 801 AGCGTGACCTGGGACACGGAGGTCAGGCACACGTCCAGCCGTTCCTT 850
S V.7 801 agggctgaagagcaagaactcgctct 85000
S V.1 851 CAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA 900
V.7 8351 cagatcgttcgctactaatcatgtct 900
V.1 901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGC 950
V.7 901 gcgactatgcgccgatgggttcactg 950
V.1 951 CTGCTCCAGGACCAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGC 1000
V.7 951 ctccagcaagtacactccaggctctg 2000
V.1 1001 TGAGGCCTCTGTGAGGGGCCTTGAAGACCAAATCTGTGGCACATTGGCA 1050
V.7 1001 tggctttaggctagacaacggcctgc 1050
V.1 1051 GAAGACAGTAGGCGATAGGACCCCCC 1100
V7 1051 gaagacagtaggcgataggacccccc 1100
V.1 1101 TACACTGGACACGGCTGGATGGGCCTCTGCCCGTGGGGTACGAGTGGA 1150
V.7 1101 taacgaagcgaggcttccgggtcatg 1150
V.1 1251 TGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT 1200
V.7 1151 tggaattgctcccctaccggaacgac 1200
V.1 1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAGGGATTCTCAGGTCACT 1250
V.7 1201 acttcagcgcaggttccaggtccgtat 1250
V.2 1252 GTGGATGTTCTTGACCCCCAGGAGACTCTGGGJGCAGGTGGACCTAGT 1300
V.7 1251 gtgttctaccagaaccggacgtgctg 1300
V.1 1301 GTCAGCCTCGGTGGTGGTGGTGGTGTGATCGCCGCACTCTTGTTCTGCC 1350
V.7 1301 gtactgtggtggggtaccgattgttc 1350
V.1 1351 TTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACATCGGCGCAAGGC 1400
242
V.7 1351 ttctggtggtggtggtggtgctcatgtcccgataccatcggcgcaaggcc 1400
V.1 1401 CAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAA 1450
00 V.7 1402. cagcagatgacccagaaatatgaggaggagctgaccctgaccagggagaa 1450
V.1 1451 CTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG 1500
V.7 1451 ctccatccggaggctgeattcccatcacacggaccccaggagcca 1495
S V.1 1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGAC 1550
C1 V.7 1495
V.1 1551 AACAGTAGCTGCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTC 1600
V.'7 gagtgaagagcccgagggccgcagttactc 1525
V.1 1601 CACGCTGACCACGGTGAGGGAGATAGAAACACAGACTGAACTGCTGTCTC 1650
00 V.7 1526 cacgctgaccacggtgagggagatagaaacacagactgaactgctgtctc 1575
V.1 1651 CAGGCTCTGGGCGGGCCGAGGAGGAGGAAGATCAGGATGAAGGCATCAAA 1700
V.7 1576 caggctctgggcgggccgaggaggaggaagatcaggatgaaggcatcaaa 1625
V.1 1701 CAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTACGGGCCAAQCC 1750
V.7 1626 caggccatgaaccattttgttcaggagaatgggaccctacgggccaagcc 1675
V.1 1751 CACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGACCCA 1800
V.7 1676 cacgggcaatggcatctacatcaatgggcggggacacctggtctgaccca 1725
V.1. 1801 GGCCTGCCTCCCTTCCCTAGGCCTGGCTCCTTCTGTTGACATGGGAGATT 1850
V. 7 1726 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagatt 1775
V.1 1851 TTAGCTCATCTTGGGGGCCTCCTTAAACACCCCCATTTCTTGCGGAAGAT 1900
V.7 1776 ttagctcatcttgggggcctccttaaacacccccatttcttgcggaagat 182S
V.1 1901 GCTCCCCATCCCACTGACTGCTTGACCTTTACCTCCAACCCTTCTGTTCA 1950
V.7 1826 gctccccatcccactgactgcttgacctttacctccaacccttctgttca 1875
V.1 1951 TCGGGAGGGCTCCACCAATTGAGTCTCTCCCACCATGCATGCAGGTCACT 2000
V.7 1876 tcgggayggctccaccaattgagtctctcccaccatgcatgcaggtcact 1925
V.1 2001 GTGTGTGTGCATGTGTGCCTGTGTGAGTGTTGACTGACTGTGTGTGTGTG 2050
V.7 1926 gtgtgtgtgcatgtgtgcctgtgtgagtgttgaCtgactgtgtgtgtgtg 1975
V.1 2051 GAGGGGTGACTGTCCGTGGAGGGGTGACTGTGTCCGTGGTGTGTATTATG 2100
V.7 1976 gaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg 2025
V.1 2101 CTGTCATATCAGAGTCAAGTGAACTGTGGTGTATGTGCCACGGGATTTGA 2150
V.7 2026 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttga 2075
V.2 2151 OTGGTTGCGTGGOCAACACTGTCAGGGTTTGGCGTGTGTGTCATGTGGCT 2200
I II I111111111111 111111 IIIII1111 IIIII IIIII IIIII 1V.7 20*76 gtggttgCgtgggcaacactgtcagggtttggcgtgtgtgtcatgtggct 2125
00 V.1 2201 GTTTACCGCGAAGCGT= CCGCCAAC 2250
V.7 2126 gtgtgtgacctctgcctgaaaaagcaggtattttctcagaccccagagca 2175
S V.1L 2251. GTATTAATGATGCAGAGGTTGGAGGAGAGAGGTGGAGACTGTGGCTCAGA 2300
V.7 2176 gtattaatgatgcagaggttggaggagagaggtggagactgtggctcaga 2225
V.1 2301 CCCAGGTGTGCGGGCATAGCTGGAGCTGGAATCTGCCTCCGGTGTGAGGG 2350
V.7 2226 cccaggtgtgcgggcatagctggagctggaatctgcctccggtgtgaggg 2275
V.1 2351 AACCTGTCTCCTACCACTTCGGAGCCATGGGGGCAAGTGTGAAGCAGCCA 2400
V.7 2276 aacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca 2325
CI V.1 2401 GTCCCTGGGTCAGCCAGAGGCTTGAACTGTTACAGAAGCCCTCTGCCCTC 2450
V.7 2326 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctc 2375
V.1 2451 TGGTGGCCTCTGGGCCTGCTGCATGTACATATTTCTGTATATACATG 2500
V. 7 2376 tgtgccggcgtcttaaattttattct 2425
V.1 2501 CGCGACTTGAGAATGTCATATTATTT 2550
V. 7 2426 cgcgacttgagaatgtcatattattt 2475
V. 1 2551 TCTTTTTTTTTTCTTGCCCTTTCCATTAGTTGTATTTTTTATTTATTTTT 2600
V.7 2476 tcttttttgcttcttgtttttatatt 2525
V.1 2601 ATTTTTATTTTTTTTTAGAGATGGAGTCTCACTATGTTGCTCAGGCTGGC 2650
V.7 2526 atttttatttttttttagagatggagtctcactatgttgctcaggctggc 2575
V.1 2651 CTTGAACTCCTGGGCTCAAGCATCCTCCTGCCTCAGCCTCCCTAGTAGC 2700
V.7 2576 cttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc 2625
V.1 2702. TGGGACTTTAAGTGTACACCACTGTGCCTGCTrGTCCTTTACGAAGA 2750
V. 7 2626 tggsactttaagtgtacaccactgtgcctgctttgaatcctttacgaaga 2675
V.1 2751 GAAAAAATTAAAGAAAGCCTTTAGATTTATCCAATGTTTACTACTG 2800
V. 7 2676 gaaaaataaaacttaatacatttcat 2725
V.1 2801 GGATTGCTTAAAGTGAGGCCCCTCCACACCAGGGGGTTAATTCCTGTGA 2850
V.7 2726 ggattgcttaaagtgaggcccctzccaacaccagggggttaattcctgtga 2775
V.1 2851 TTGTGAAAGGGGCTACTTCCGGCATC~TAGCAGGCAGCCCCTTGGG 2900
V.7 2776 tttaaggtctcagattctcgcgcctg 2825
V.1 2901 AGGGCACCTGAGAGCTGGTAGAGTCTGAAATTAGGGATGTGAGCCTCGTG 2950
V.7 2826 aggacgggtgaattgatagagggcct 2875
V.1 2951. GTTACTGAGTAAGGTAAAATTGCATCCACCATTGTTTGTGATACCTTAGG 3000
V.7 2876 gttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg 2925
00) V.1 3001 GAATTGCTTGGACCTGGTGACAAGGGCTCCTGTTCAATAGTGGTGTTGGG 3050
V.7 2926 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggg 2975
V.1 3051 GAGAGAGAGAGCAGTGATTATAGACCGAGAGAGTAGGAGTTGAGGTGAGG 3100
V.7 2976 gagagagagagcagtgattatagaccgagagagtaggagttgaggtgagg 3025
V.1 3101 TGAAGGAGGTGCTGGGGGTGAGAATGTCGCCTTTCCCCCTGGGTTTTGGA 3150
V.7 3026 tgaaggaggtgctgggggtgagaatgtcgcctttccccctgggttttgga 3075
V.1 3151. TCACTAATTCAAGGCTCTTCTGGATGTTTCTCTGGGTTGGGGCTGGAGTT 3200
C] V.7 3076 tcactaattcaaggctcttctggatgtttctctgggttggggctggagtt 3125
V. 1 3201 CAATGAGGTTTATTTTTAGCTGGCCCACCCAGATACACTCAGCCAGAAA 325000V.7 3126 caatgaggtttatttttagctggcccacccagatacactcagccagaata 3175
V.1 3251 CCTAGATTTAGTACCCAAACTCTTCTTAGTCTGAAATCTGCTGGATTTCT 3300
V.7 3176 cctagatttagtacccaaactcttcttagtctgaaatctgctggatttct 3225
V.1 3301 GGCCTAAGGGAGAGGCTCCCATCCTTCGTTCCCCAGCCAGCCTAGGACTT 3350
V.7 3226 ggcctaagggagaggctcccatccttcgttccccagccagcctaggactt 3275
V.1 3351 CGAATGTGGAGCCTGAAGATCTAAGATCCTAACATGTACATTTTATGTAA 3400
V.7 3276 cgaatgtggagcctgaagatctaagatcctaacatgtacattttatgtaa 3325
V.1 3401 ATATGTGCATATTTGTACATAAAATGATATTCTGTTTTTAAATAAACAGA 3450
V.7 3326 atatgtgcatatttgtacataaaatgatattctgtttttaaataaacaga 3375
V.1 3451 CAAAACTTGaaaaa 3464
V.7 3376 caaaacttgaaaaa 3389
Table LIV(b). Peptide sequences of protein coded by 191P4DI2(b) v.7 (SEQ ID NO: 114)MPIJSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGE QVGQVAWARV DAGEGAQELA LLHSKYGLHV SPAYEGRVEQ PPPPIUNPLDG SVLLRNAVQA 120DEGEYECRVS TFPAGSFQAR LRLjRVLVPPL PSLNPGPALE EGQGLTLAAS CTAEGSPAPS 180VTWflTEVKGT TSSRSFKHSR SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL 240IIVSFLAEASV RGLEDQNLWH IGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRVDGDTL 300GFPPLTTEHS GIYVCHVSNE FSSRDSQVTV DVLDPQEDSG KQVD)LVSASV VVVGVIAALL 360FCLLVVVVVL MSRYHRRKAQ QMTQKYEEEL TLTRENSIRR LHSRHTDPRS QSEEPEGRSY 420STLTTVREIE TQTELLSPGS GRAEEEEDQD EGIKQAmNHp VQEUGTLRAK PTGNGIYING 480RGHLV 485
Table LV(b). Amino acid sequence alignment of 191 P4DI2(b) vM (SEQ ID NO: 115) and 191P4D12(b) v.7 (SEQ ID NO:116).V.1 1 MPLSLGAEMWGPEAWLLLLLLLASPTGRCPAGELETSDVVTVVLGQDAXKL
V.7 1 MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKcL
V.1 51 PCFYRGDSGEQVGQVAWARVDAGEGAQELALL1.SKYCLHVSPAYEGRVEQ 100
00
V.7 51 PCFYRGDSGEQVGQVWAVDAGEGAQELLHMS1GCLHSPAYEGRVEQ
V.1 101 PPPNLGVLNVAEEECVTPGFALLVVP
V.7 101 PPPPRPLDGSVLLRAVQADEGEYECRVSTPAGSFQARJLRLRVLVPPL
V.1 151 PSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSRSFHSR
V.7 151 PSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVJXGTTSSRSFKHSR
V.1 201 SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILVSFMASV
V.7 201 SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVSFLAEASV
V.1 251 RGIJEDQNLWHIGREGALKCLSEGQPPPSYWTRLDGPLPSGVRVDGDTL
V.7 251 RGLEDQNLWHIGREGAMLKCLSEGQPPPSWTRLDGPLPSGVVGDTL
V.1 301 GFPPLTTEHSGIYVCHVSNEFSSRDSQVVDVLDPEDSGKQIDLVSASV
V.7 301 GFPPLTTEHSGIYVCHVSNEFSSPJJSQVTVDVIDPQEDSGKQVJDLVSASV
V.1 351 VVGIALCLVVLSYRRAQTKBETTESR
V.7 351 VVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRR
V.1 401 LHSHHTDPRSQPEESVGLRAEGI{PDSLKDNSSCSVMSEEPEGRSYSTLTT
V.7 401 SEEPEGRSYSTLTT
V.1 451 VRITTLSGGAEEQEIQMHVEGLA TW
V.7 426 VRITTLSGGAEEQEGKANFQNTRKTN
100
150
150
200
200
250
250
300
300
350
350
400
400
450
425
Soo
475
V.1 501 IYINGRGHLV
IllIhIiIV.7 476 IYINGRGHLV
Table LII(c). Nucleotide sequence of transcript variant 191 P4DI2(b) v.8 (SEQ ID NO:ggc cgtcgttacggcttctttCCCCtagtgcagttccttagctgggcagtaggcctggctagc tggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaac cgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgat
9ttggccacagggggtagctgagacccaagttcaagtctgctgcctttcagctgctgctgCtcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactaCccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccCtcCctcatggggacacfrtgtcagcaatggaagactctCgCC9Cactc
gcgtgggaagacggctgggttgcgagaggcc agc cggct caccatgccccc tactgctgggtaactgtgggagcaagtgggcgctactgcCagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttCtCCaCgtgtcacattggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcc
cagctctggggtgtagaacgaagaactctgccagggagattgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgacCaagggattctggacctagtttctggtggt
ggagctcggagggCCggggCcagcttcctgCtcggtggaaagccgagatgaggccggtgcggacgcaaaaatgggctcggcgggcttcatCCCcctggacgtgccgggtcggtSCCtccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgt Cagcctcgggtggtggtg
117)gCtCCCgatctggggctgggcct tctgggtcttcagaaactgggggcctgCccgcgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccCtgccctCaCtcctgcacagacaacgtccattggtgcctactgctccagggtgaggggcctgcctgagtgCccagtggggagcggcatctgtggatgttcgtggtggtggctcatgtccc
120180240300360420480540600660720780840900960
1020108011401200126013201380
00
00
gataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggcctgcctcttgggggCCtcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgagggtccctgggttgggcctgctaatactgctctgtattttt~ttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagCCtCgtggtgattatagatgtcgccttgggttggggccagaatacctctaagggagatgaagatctaatgatattct
gcgcaaggccctccatccggagggctgagagagtgaagagacagactgaaaggcatcaaacacgggcaatcct tcc ctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctcc agccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttgggctggtgacaaaccgagagagtccccctgggtggagttcaaagatttagtaggctcccatcagatcctaacgtttttaaat
cagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctacagcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggc tcaagactgtgcctgttatccaatgattcctgtgaagggcacctggggctcctgttaggagt tgattttggatcatgaggtttatcccaaactctCttcgttCCCatgtacattt
cccagaaatacccatcacacacc ctgataggcagt tactccaggctctggaccattttgttcaatggggttctgttgactgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctqtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatcaatagtggggtgaggtgactaattcaagttttagctggtcttagtctgcagccagccttatgtaaata
tgaggaggaggyac cc cagytctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctgatgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtCtCtgCCCtCcgccgggagcttcttgccctatggagtctcgcctcagccttt tacgaagaggattgcttaggctacttccgagtctgaaatgttggggagaggaggtgctgctcttctggcccacccagaaaatctgctgaggacttcgatgtgcatatt
ctgaccctgaagccagccggaacagtagctacggtgaggggaggaggaagg ggaccc tacgtctgacccattagctcatcccactgactggagtCtCtcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatgg tggCc t cttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtagagagagcagggggtgagaatgtttctcttacactcagcgatttctggcatgtggagcctgtacataaa
144015001.5601620168017401800186019201980204021002160222022802340240024602520258026402700276028202880294030003060312031803240330033603401aaacagacaa aacttgaaaa a
Table 1.1II(c). Nucleotlde sequence alignment of 191P4D12(b) v.1 (SEQ ID NO: 118) and 191P4D12Q,) v.8 (SEQ ID NO:119)V.1 1 gGCCGTCGTTGTTGGCCACAGCGTGGGAAGCAGCTCTGGGGGAGCTCGGA
V.8 1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcgga s0
V.1 51 GCTCCCGATCACGGCTTCTTGGGGGTAGCTACGGCTGGGTGTGTAGAACG 100
V.8 51 gctcccgatcacggcttcttgggggtagctacggctgggtgtgtagaacg 100
V.1 101 GGGCCGGGGCTGGGGCTGGGTCCCCTAGTGGAGACCCAAGTGCGAGAGGC 150
V.8 101- gggccggggctggggctgggtcccctagtggagacccaagtgcgagaggc 150
V.1 151 AAGAACTCTGCAGCTTCCTG3CCTTCTGGGTCAGTTCCTTATTCAAGTCTG 200
V.8 151 aagaactctgcagcttcctgccttctgggtcagttccttattcaagtctg 200
V.1 201 CAGCCGGCTCCCAGGAGATCTCGGTGGAACTTCAGAALACGCTGGGCAGT 250
V.8 201 cagccggctcccagggagatctcggtggaacttcagaaacgctgggcagt 250
V.1 251 CTGCCTTTCAACCATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG 300
V.8 251 ctgcctttcaaccatgcccctgtccctgggagccgagatgtgggggcctg 300
V.1 301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCC-GGTGC 350
V. 8 301 aggcctggctgctg'ctgctgctactgctggcatcatttacaggccggtgc 350
00 V.1 353. CCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGWCCA 400
V.8 351 cccgcgggtgagctggagacctcagacgtggtaactgtggtgctgggcca 400
V.1 401 GGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGG 450
V.8 401 ggacgcaaaactgccctgcttctaccgaggggactccggcgagcaagtgg 450
451 GGCAAGTGGCATGGGCTOGGGTGGACGCGGGCGAGGCGCCCAGGAACTA 500
V.8 451 ggaggctgccgtgcggggaggcagat 500
V.3. 501 GCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGGCTTACGAGGG 550
501 gcgctactgcactccaaatacgggcttcatgtgagcccggcttacgaggg 550
C1 V.1 551 CCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC 600
V.8 551 ccgcgtggagcagccgccgcccccacgcaaccccctggacggctcagtgc 600
V.1 601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTC 650
V. 8 601 tcctgcgcaacgcagtgcaggcggatgagggcgagtacgagtgcc9gggtc 650
V. 1 651 AGCACCTTCCCCGCCGGCAGCTTCCAGCGCGGCTGCGGCTCCGAGTGCT 700
V.8 651 agcaccttccccgccggcagcttccaggcgcggctgcggctccgagtgct 700
V.1 701 GGGCCCTCCCCGATCGCACCAAGWC 750
V. 8 701 gggccctccccgaccgtcgatgaagc 750
V.*1 751 AGGGCCTGACCCTGGCAGCCTCCTGCACAGCTGAGGGCAGCCCA.GCCCCC 800
V. 8 751 aggcgccgcgcctcaacgggaccgcc 800
V.1 801 AGCGTGACCTGGGACACGGAGGTAGOCACACGTCCAGCCGTTCCTT 850
V. 8 801 agggctgaagagcaagaactcgctct 850
V.1 851 CAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA 900
V-8 851 111111111 11111111111111111111111111111111111111 V.1 901 GCCGCAGCATGA.TGGGCGCCACTGACTTGTGTGGTGTCCCTCCTGG3C 950
V. 8 901 gccgcagcatgaatgggcagccactgacttgtgtggtgt~ccatcctggc 950
V.1 951 CTGCTCCAGGACCAAAGGATCACCCACTCCTCCACG3TGTCCTTCCTTGC 1000
V.8 951 ctccagcaagtacactccaggctctg 1000
V.1 1001 TGGCTTTAGGCTAGCAATTTOCCTGC 1050
V.8 1001 tggctttaggctagacaacggcctgc 1050
V.1 1051 GAGAAGGAGCTATGCTCAGTGCCTGAGTGAGG GCCCCCTCCCTC!A 1100
V. 8 1051 gaagacagtaggcgataggacccccc 1100
V.1 1101 TACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGGTACGAGTOGA 1150
V.8 1101 tacaactggacacggctggatgggcctctgcccagtggggtacgagtgga 1150
00V.1 1151 TGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAG.CGGCATCT 1200
C] V.8 1151 tggggacactttgggctttcccccactgaccactgagcacagcggcatct 1200
V.1 1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACT 1250
SV. 8 1201 acgtctgccatgtcagCaatgagttctcctcaagggattctCaggtcact 1250
V.1 1251 GTGGATGTTCTTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGT 1300
V. 8 1251 gtggatgttcttgacccccaggaagactctgggaagcaggtggacctagt 1300
V.1 1301 GTCAGCCTCGGTGGTGGTGGTGGGTGTGATCGCCGCACTCTIGTTCTGCC 1350
V.8 1301 gtcagcctcggtggtggtggtgggtgtgatcgccgcactcttgttctgcc 1350
00 V.1 1351 VTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCC 1400
0 V.8 1351 ttctggtggtggtggtggtgctcatgtcccgataccatcggcgcaaggcc 1400
V.1 1401 CAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAA 1450
V.8 1401 cagcagatgacccagaaatatgaggaggagctgacctgaccagggagaa 1450
V.1 1451 CTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG 1500
V.8 1451 ctccatccggaggctgcattcccatcacacggaccccaggagccagccgg 1500
V.1 1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGOCACCCTGATAGTCTCAAGGAC 1550
V.8 1501 aggagagtgtagggctgagagccgagggccaccctgatagtctcaaggac 1550
V.1 1551 AACAGTAGCTGCTCTGTGATGATGAAGA~.GCCCGAGGGCCGCAGTTACTC 1600
V.8 1551 aacagtagctgctctgtgatgatgaagagcccgagggccgcagttactc 1600
V.1 1601 CACGCTGACCACGGTGAGGGAGATAGAAACACAGACTGAACTGCTGTCTC 1650
V.8 1601 cacgctgaccacggtgagggagatagaaacacagactgaactgctgtctc 1650
V.1 1651 CAGGCTCTGGGCGGGCCGAGGAGGAGGAAGATCAGGATGAAGGCATCAAA 1700
V. 8 1651 caggctctgggcgggccgaggaggaggaagatcaggatgaaggcatcaaa 1700
V.1 1701 CAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTACGGGCCAAGCC 1750
V.8 1701 caggccatgaaccattttgttcaggagaatgggaccctacgggccaagcc 1750
V.1 1751 CACGGGCAATGGCATCTACATCAATGGGCGGGGACAOCTGGTCTGACCCA 1800
V.8 1751 cacgggcaatggcatctacatcaatgggcggggacacctggtctgaccca 1800
V.1 1801 GGCCTGCCTCCCTTCCCTAGGCCTGGCTCCTTCTGTTGACATGGOAGATT 1850
V.8 1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagatt 1850
V.1 1851 TTAGCTCATCTTGGGGGCCTCCTTAAACACCCCCATTTCTTGCGGAAGAT 1900
V.8 1851 ttagctcatcttgggggcctccttaaacacccccatttcttgcggaagat 1900
249
V. .1 1901 GCTCCCCATCCCACTGACTGCTTGACCTTTACCTCCAACCCTTCTGTTCA 1950
00V.8 1901 gctccccatcccactgactgcttgacctttacctccaacccttctgttca 1950
V.1 1951 TCGGGAGGGCTCCACCAATTGAGTCTCTCCCACCATGCATGCAGGTCACT 2000
V.8 1951 tcgggagggctccaccaattgagtctctcccaccatgcatgcaggtcact 2000
SV.1. 2001 GTGTGTGTGCATGTGTGCCTGTGTGAGTGTTGACTGACTGTGTGTGTGTG 2050
VA 001gtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactgtgtgtgtgtg 2050
V.1 2051 GAGGGGTGACTGTCCGTGGAGGGGTGACTGTGTCCGTGGTGTGTATTATG 2100
r-V.8 2051 gaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg 2100
(iV.1. 2102. CTGTCATATCAGAGTCAAGTOAACTGTGGTGTATGTGCCACGGGATTTGA 21.50
(iV.8 2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttga 215000V. 1 2151 GTGGTTGCGTGGGCAACACTOTCAGGGTTTGGCGTGTGTGTCATGTGGCT 2200
V. 8 2151 gtggttgcgtgggcaacact~tcagggtttggcgtgtgtgtcatgtggct 2200
V. 1 2201 GTGTGTGACCTCTGCCTGAAAAAGCAGGTATTTTCTCAGACCCCAGAGCA 2250
V. 8 2201 gtgtgtgacctctgcctgaaaaagcaggtattttctcagaccccagagca 2250
V. 1 2251 GTATTAATGATGCAGAGGTTc zGAGGAGAGAGGTGGAGACTGTGGCTCAGA 2300
V. 8 2251 gtattaatgatgcagaggtt(-gaggagagaggtggagacegtggctcaga 2300
V. 1 2301 CCCAkGGTGTGCGGGCATAGCTGGAGCTGJ JATCTGCCTCCGGTGTG;AGGG 2350
V. 8 2301 cccaggtgtgcgggcatagctggagctggaatctgcctccggtgtgaggg9 2350
V.1 2351 AACCTGTCTCCTACCACTTCGGAGCCATOGGGGCAAGTGTGAAGCAGCCA 2400
V.8 2351 aacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca 2400
V.1 2401 GTCCCTGGGTCAGCCAGAGGCTTGACTQTTAAGAGCCCTCTGCCCTC 2450
V.8 2401 gtccctgggtcagccagaggcttgaact~ttacagaagccctctgccctc 2450
V.1 2451 TGGTGGCCTCTGGGCCTGCTGCATGTACTATTTCTGTATATACATG 2500
V.8 2451 tggtggcctctgggcctgctgcatgtacatattttctgtaaatatacatg 2500
V.1 2501 CGCCGGGAGCTTCTTGCAGGAATACTGCTCCGATCACTTTTAATTTTTT 2550
V.8 2501 cgccgggagcttcttgcaggaatactgctccgaatcacttttaattttt 2550
V.1 2551 TCTTTTTTTTTTCTTGCCCTTTCCATTAGTTGTATTTTTTATTTATTTTT 2600
V. 8 2551 tcttttttgcttcttgtttttatatt 2600
V.1 2601 ATTTTTATTTTTTTTTAGAGATGGAGTCTCACTATGTTGCTCAGGCTGGC 2650
V. 8 2601 atttttatttttttttagagatggagtctcactatgttgctcaggctggc 2650
V.1 2651 CTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCTCCCTAGTAGC 2700
250
V.8 2651 cttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc 2700
V.1 2701 TGGGACTTTAAGTGTACACCACTGTGCCTGCTTTGAATCCTTTACGAAGA 2750
00111 ~lIIIfI ffl 111SV.8 2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaaga 2750
ClV.1 2751 GAAAAbAAATTAAAGAAAGCCTTTAATTTATCCAATGTTTACTACTG 2800
Ct V.8 2751 Saaaaaaaaaattaaagaaagcctttagatttatccaatgtttactactg 2800
SV.1 2 801 GGATTGCTTAAAGTGAGGCCCCTCCAACACCAGGGGGTTAATTCCTGTGA 2850
CIV.8 2801 ygattgcttaaagtgaggcccctccaacaccagggggttaattcctgtga 2850
V.1 2851 TTGTGAAAGGGGCTACTTCCAAGGCATCTTCATGCAGGCAGCCCCTTGGG 2900
V.8 2851 ttgtgaaaggggctacttccaaggcatcttcatgcaggcagccccttggg 2900
V.1 2901 AGGGCACCTGAGAGCTGGTAGAGTCTGAAATTAGGGATGTGAGCCTCG;TG 2950
00 V.8 2901 agggcacctgagagctggtagagtctgaaattagggatgtgagcctcgtg 2950
SV.1 2951 GTTACTGAGTAAGGTAAAATTGCATCCACCATTGTTTGTGATACCTTAGG 3000
V.8 2951 2950
V.1 3001 GAATTGCTTGGACCTGGTGACAAGGGCTCCTGTTCAATAGTGGTGTTGGG 3050
V.8 ctggtgacaagggctcctgttcaatagtggtgttggg 2987
V.1 3051 GAGAGAGAGAGCAGTGATTATAGACCGAGAGAGTAGGAGTTGAGGTGAGG 3100
V.8 2988 gagagagagagcagtgattatagaccgagagagtaggagttgaggtgagg 3037
V.1 3101 TGAAGGAGGTGCTGGGGGTGAGAAJTGTCGCCTTTCCCCCTGGGTTTTGGA 3150
V.8 3038 tgaaggaggtgctgggggtgagaatgtcgcctttcccctgggttttgga 3087
V.1 3151 TCACTAATTCAAGGCTCTTCTGGATGTTTCTCTGGGTTGGGGCTGGAGTT 3200
V.8 3088 tcactaattcaaggctcttctggatgtttctctgggttggggctggagtt 3137
V.1 3201 CAATGAGGTTTATTTTTAGCTGGCCCPLCCCAGATACACTCAGCCAGAATA 3250
V.8 3138 caatgaggtttatttttagctggcccacccagatacactcagccagaata 3187
V.1 3251 CCTAGATTTAGTACCCAAACTCTTCTTAGTCTGAAATCTGCTGGATTTCT 3300
V.8 3188 cctagatttagtacccaaactcttcttagtctgaaatctgctggatttct 3237
V.1 3301 GGCCTAAGGGAGAGGCTCCCATCCTTCGTTCCCCAGCCAGCCTAGGACTT 3350
V.8 3238 ggcctaagggagaggctcccatccttcgttccccagccagcctaggactt 3287
V.1 3351 CGAATGTOGAGCCTGAAGATCTAAGATCCTAACATGTACATTTTATGT4A 3400
V.8 3288 cgaatgtggagcctgaagatctaagatcctaacatgtacattttatgtaa 3337
V.1 3401 ATATGTGCATATTTGTACATAAAATGATATTCTGTTTTTAAATAAACAGA 3450
V.8 3338 atatgtgcatatttgtacataaaatgatattctgtttttaaataaacaga 3387
V.1 3451 CAAAACTTGaaaaa 3464
V.8 3388 caaaacttgaaaaa 3401
00Table LIV(c). Peptide sequences of protein coded by 1919P01 2(b) v.8 (SEQ ID NO: 120)MPLSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGE QVGQVAWARV DAGEGAQELA LLHSKYGLHV SPAYEGRVEQ PPPPRNPLD)G SVLjLRNAVQA 120DEGEYECRVS TFPAGSFQAR LRLRVLVPPIL PSLNJPGPALE EGQGILTLAAS CTAEGSPAPS 180VTWDTEVKGT TSSRSFKHSR SAAVTSEPHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL 240
SHVSFLAEASV RGLEDQNLWH IGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRVDGDTL 300GFPPLTTEHS GIYVCHVSNE FSSRDSQVTV DVLDPQEDSG KQVDLVSASV VVVGVIAALL 360
ciFCLLVVVVVL MSRYHRRKAQ QMTQKYEEEL TLTRENSIRR LHSHHTDPRS QPEESVGLRA 420EGHPDSLKDbI SSCSVMSEEP EGRSYSTLTT VREIETQTEL LSPGSGRAEE EEDQDEGIKQ 480ANNHFVQENG TLRAKPTGNG IYINGRGHLV 510
Table LV(c). Amino acid sequence alignment of 191 P401(b) v.1 (SEQ ID NO: 121) and 191 P4D12(b) v.8 (SEQ ID NO:c]122)CiV-1 1 MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKcL
N V.8 1 MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKL so00
V. 1 51 PCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSI(YGLHVSPAYEGRVEQ 100
V.8 51 PCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQ 100
V. 1 101 PPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVTJVPPL 150
V. 8 101 PPPPRNPLDGSVLLRNAVQAflEGEYECRVSTFPAGSFQARLRLRVLVPPL 150
V.1 151 PSLNPGPAIIEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSR 200
V.8 151 PSLUIPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSR 200
V.1 201 SAAVTSEPHLVPSRSMNGQPLTCVVSHPGIJLQDQRITHILHVSFLAEASV 250
V.8 201 SAAVTSEPHLiVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVSFLAEASV 250
V.1 251 RGLEDQNLWHIGREGAMLKCLSEGQPPPSYNWTR jDGPLPSGVRVDGDTL 300
V.8 251 RGLEDQNLWf{IGREGAM~LKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTL 300
V.1 301 GFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASV 350
V.8 301 GFPPLTTEHSGIYVCHVSbNEFSSRlSQVTVDVLDPQEDSGKQVDLVSASV 350
1 351 VVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMvTQKYEEELTLTRENSIRR 400
V.8 351 VVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRR 400
V.1 401 LHSHHTDPRSQPEESVGLRAEGHPDSLKDNSSCSVMSEEPEGRSYSTLTT 450
V. 8 401 LHSHHTDPRSQPEESVGLRABGHPDSLKDNSSCSVMSEEPEGRSYSTLTT 450
V. 1 451. VREIETQTELLSPGSGRABEEEDQDEGIKQAMNHFVQENGTLRAKPTGNG 500
V.8 451 VREIETQTELLSPGSGRAEEEEDQDEGIKQAMNHFVQEGTLRACPTGNG 500
V.1 501 IYINGRGHLV 510
V.8 501 IYINGRGHLV 510
Table 1-1I(d). Nucleotide sequence of transcript variant 191P4D12(b) v.9 (SEQ ID NO: 123)
252
00
00
gtCtgaCCCattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggqcatcttttagggatgtataccttagggagagagagagCtgggggtgtggatgtttcag ata cac tcctggatttctcgaatgtggaatttgtacat
ggcctgCCtCttgggggCCtcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgagggtccctgggttgggCCtgCtaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggca,gagcctcgtggaattgcttggcagtgattaagaatgtcgctCtgggttggagccagaataggcctaaggggcctgaagataaaatgatat
cct tccc tagccttaaacacacctccaacc.gcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagCCCCttggggttact~agtgacctggtgatagaccyagaCtttcCCCCtggctggagttcctagatttaagaggctcccctaagatccttctgttttta
gCCtggCtccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggCgtgtgtgccccagagcaCCaggtgtgctaccacttccttgaactgtatt~t t ctgt attaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggct ccgagtaggagtgggttttggacaatgaggtgtacccaaacatccttcgttaacatgtacaaataaacaga
ttCtgttgaCtgcggaagattcgggagggcatgtgtgc~tggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtctttttttttttttt agagcaatcctcctctttgaatcctttactactgt tgtgaaaggagagctggtatgcatccacctgttcaata9tgaggtgaggtcactaattctatttttagctcttcttagtccccagccagttttatgtaacaaaacttg
atgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtCtCtgCCCtCcgccgggagcttCttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaaattgtttgtgtggtgttgggtgaaggaggtaaggctcttCtggcccaccctgaaatctgcctaggacttatatgtgcat
120180240300360420480540600660720780840900960
102010801140120012601320138014401500156016201669
Table 1-11(d). Nucleotide sequence alignment of 19P4D1(b) v.1 (SEQ ID NO: 124) and 191P4D1(b) v.9 (SEQ ID NO:125)v.1 1791 GTCTGACCCAGGCCTGCCTCCCTTCCC!TAGGCCTGGCTCCTTCTGTTGAC 1840
V. 9 1 gtctgacccaggcctgcctcccttccctaggcctggctccttctgttgac
v.1 1841 ATGGGAGATTTTAGCTCATCTTGGGGGCCTCCTTAAACACCCCCATTTCT 1890
V.9 51 atgggagattttagctcatcttgggggcctccttaaacacccccatttct 100
v.1 1891 TGCOGAAGATGCTCCCCATCCCACTG1ACTGCTTGACCTTTACCTCCAACC 1940
v.9 101 tgcggaagatgctccccatcccactgactgcttgacctttacctccaacc 150
v.1 1941 CTTCTGTTCATCGGGAGGGCTCCACCAATTGAGTCTCTCCCACCATGCAT 1990
v.9 151 cttctgttcatcgggagggctccaccaattgagtctctCCCaccatgcat 200
v.1 1991 GCAGGTCACTGTGTGTGTGCATGTGTGCCTGTGTGAGTGTTGACTGACTG 2040
v.9 201 gcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg 250
v.1 2041 TGTGTGTGTGGAGGGGTGACTGTCCGTGGAGGGGTGACTGTGTCCGTGGT 2090
v.9 251 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggt 300
v.1 2091 GTGTATTATGCTGTCATATCAGAGTCAAGTGAACTGTGGTGTATGTGCCA 2140
v.9 301 gtgtattatgctgtcatatcagagtcaagtgaactgtggtgtatgtgcca 350
v.1 2141 CGGGATTTGAGTGGTTGCGTGGGCAACACTGTCAGGGTTTGGCGTGTGTG 2190
v.9 351 cgggatttgagtggttgcgtgggcaacactgtcagggtttggcgtgtgtg 400
v.1 2191 TCATGTGGCTGTGTGTGACCTCTGCCTGAAAAAGCAGGTAT2TTCTCAGA 2240
00 v.9 401. tcatgtggctgtgtgtgacctctgcctgaaaaagcaggtattttctcaga 450
v.1 2241 CCCCAGAGCAGTATTAATGATGCAGAGGTTGGAGGAGAGAGGTGGAGACT 2290
v.9 :51 500ggatttagtcgggtggaaagtggc o
Sv.1 221GTGGCTCAGACCCAGGTGTGCGGGCATAGCTGGAGCTGGAATCTGCCTCC 2340
v.9 501 gtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc 550
v.1 2341 GGTGTGAGGGAACCTGTCTCCTACCACTTCGGAGCCATGGGGGCAAGTGT 2390
551 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgt 600
2391 GAAGCAGCCAGTCCCTGGGTcAGccAG.AGGCTTGAACTGTTACAGAAGCC 2440
v.9 601 gaagcagccagtccctgggtcagccagaggcttgaactgttacagaagcc 65000
v.1 2441 CTCTGCCCTCTGGTGGCCTCTGGGCCTGCTGCATGTACATATTTTCTGTA 2490
v.9 2651 cttcccgtgccggcgtcttctttcga 700
v. 291AATATACATGCGCCGGGAGCTTCTTGCAGGAATACTGCTCCGAATCACTT 254 0
v.9 701 aatatacatgcgccgggagcttcttgcaggaatactgctccgaatcactt 750
v.1 2541 TTAATTTTTTTCTTTTTTTTTI'CTTGCCCTTTCCATTAGTTGTATTTTTT 2590
v.9 751 ttaatttttttcttttttttttcttgccctttccattagttgtatttttt 800
v.1 2591 ATTTATTTTTATTTTrATTTTTTTTTAGAGATGGAGTCTCACTATGTTGC 2640
v.9 801 atttatttttatttttatttttttttagagatggagtctcactatgttgc 850
v. 1 2641 TCAGGCTcGGCCTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCT 2690
v.9 851 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcct 900
V.1 2691 CCCTAGTAGCTGGGACTTTAAGTGTACACCACTGTGCCTGCTTTGAATCC 2740
v.9 901 ccctagtagctgggactttaagtgtacaccactgtgcctgctttgaatcc 950
v.1 2741 TTTACGAAGAGAAAAAATTAAAGAAAGCCTTTAGATTTATCCAATG 2790
v. 9 951 tttacyaagagaaaaaaaaaattaaagaaagcctttagatttatccaatg 1000
v.1 2791 TTTACTACTGGGATTGCTTAAAGTGAGGCCCCTCCAACACCAGGGGGTTA 2840
V.9 1001 tttactactgggattgcttaaagtgaggcccctccaacaccagggggtta 1050
v.1 2841 ATTCCTGTGATTGTGAAAGGGGCTACTTCCAAGGCATCTTCATGCAGGCA 2890
v-9 1051 attcctgtgattgtgaaaggggctacttccaaggcatcttcatgcaggca 1100
v.1 2891 GCCCCTTGGGAGGGCACCTGAGAGCTGGTAGAGTCTGATTAGGGATGT 2940
v. 9 1101 gccccttgggagggcacctgagagctggtagagtctgaaattagggatgt 1150
v.1 2941 GAGCCTCGTGGTTACTGAGTAAGGTAALAATTGCATCCACCATTGTTTGTG 2990
254
v.9 1151 gagcctcgtggttactgagtaa99taaaattgcatccaccattgtttgtg 120o
v.1 2991 ATACCTTAGGGAATTGCTTGGACCTGGTGACAAGGGCTCCTGTTCAATAG 3040
Sv.9 1201 ataccttagggaattgcttggacctggtgacaaggctcctgttcaatag 1250
Clv.1 3041 TGGTGTTGGGGAGAGAGAGAGCAGTGATTATALGACCGAGAGAGTAGGAGT 3090
C~v.9 1-251 tggtgttggggagagagagagcagtgattatagaccgagagagtaggagt 1300
v.1 3091 TGAGGTGAGGTGAAGGAGQTGCTGGGGGTGAGAATGTCGCCTTTCCCCCT 3140
v.9 1301 tgaggtgaggtgaaggaggtgctgggggtgagaatgtcgcctttccccct 1350
v.1 3141 GGGTTTTGGATCACTAATTCAAGGCTCTTCTGGATGTTTCTCTOGGTTGG 3190
v.9 1351 gggttttggatcactaattcaaggctcttctggatgtttctctggttgg 1400
.1 3191 GGCTGGAGTTCAATGAGGTTTATTTTTAGCTGGCCCACCCAGATACACTC 3240
00 v.9 1401 ggctggagttcaatgaggtttatttttagctggCCCaccagatacactc 1450
-v.1 3241 AGCCAGAATACCTAGATTTAGTACCCAAACTCTTCTTAGTCTGATCTG 3290
v.9 1451 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctg 1500
v. 1 3291 CTGGATTTCTGGCCTAAGGGAGAGGCTCCCATCCTTCGTTCCCCAGCCAG 3340
v. 9 1501 ctggatttctggcctaagggagaggctcccatccttcgttCcccagccag 1550
v.1 3341 CCTAGGACTTCGAATGTGGAGCCTGAAGATCTAAGATCCTAACATGTACA 3390
v.9 1551 cctaggacttcgaatgtggagcctgaagatctaagatcctaacatgtaca 1600
v.1 3391 TTTTATGTAAATATGTGCATATTTGTACATAAAATGATATTCTGTTTTA 3440
v.1 3441 AATAAACAGACAAAACTTG 3459
v.9 1651 aataaacagacaaaacttg 1669
Table LIV(d). Peptide sequences of protein coded by 19112012(b) v.9 (SEQ ID NO: 128)MRRELLAGIL ILRITFNFFLF FFLPFPLVVF FIYFYFYFFL EMESHYVAQA GLELLGSSNP
PASASLVAGT LSVHHCACFE SFTKRKKKLK KAFRFIQCLL LGLLKVRPLQ HQGVNSCDCR 120
RGYFQGIFMQ AAPWEGT 137
Table LV(d). Amino acid sequence alignment of 1911241312(b) v.1 and 19113012(b) v.9
(NO SIGNIFICANT MATCH)
CLAIMS:
00 1. A composition that comprises, consists essentially of, or consists of:
O a) a peptide of eight, nine, ten, or eleven contiguous amino acids of a protein of Figure 2;
b) a peptide of Tables VIII-XXI;
c) a peptide of Tables XXII to XLV; or,
d) a peptide of Tables XLVI to XLIX.
1 2. A composition of claim 1 that comprises a protein related to a protein of Figure 2.
3. A protein of claim 2 that is at least 90, 91,92, 93, 94, 95, 96, 97, 98, or 99% homologous to an entire
=K amino acid sequence shown in Figure 2.
i 4. A composition of claim 1 wherein the substance comprises a CTL polypeptide or an analog thereof, from
00 the amino acid sequence of a protein of Figure 2.
A composition of claim 4 further limited by a proviso that the epitope is not an entire amino acid
sequence of Figure 2.
6. A composition of claim 1 further limited by a proviso that the polypeptide Is not an entire amino acid
sequence of a protein of Figure 2.
7. A composition of claim 1 that comprises an antibody polypeptide epitope from an amino acid sequence of
Figure 2.
8. A composition of claim 7 further limited by a proviso that the epitope is not an entire amino acid
sequence of Figure 2.
9. A composition of claim 7 wherein the antibody epitope comprises a peptide region of at least 5 amino
acids of Figure 2 in any whole number increment up to the end of said peptide, wherein the epitope comprises an amino acid
position selected from:
a) an amino acid position having a value greater than 0.5 in the Hydrophilicity profile of Figure
b) an amino acid position having a value less than 0.5 In the Hydropathicity profile of Figure 6;
c) an amino acid position having a value greater than 0.5 in the Percent Accessible Residues profile of
Figure 7;
d) an amino acid position having a value greater than 0.5 in the Average Flexibility profile of Figure 8;
e) an amino acid position having a value greater than 0.5 in the Beta-tur profile of Figure 9;
f) a combination of at least two of a) through e);
g) a combination of at least three of a) through e);
h) a combination of at least four of a) through or
I) a combination of five of a) through e).
A polynucleotide that encodes a protein of claim 1.
11. A polynucleotide of claim 10 that comprises a nucleic acid molecule set forth in Figure 2.
00O 12. A polynucleotide of claim 10 further limited by a proviso that the encoded protein is not an entire amino
C< acid sequence of Figure 2.
13. A composition of claim 11 wherein the substance comprises a polynucleotide that comprises a coding
sequence of a nucleic acid sequence of Figure 2.
14. A polynuceotide of claim 11 that further comprises an additional nucleotide sequence that encodes an
S additional peptide of claim 1.
rC 15. A composition comprising a polynucleotide that is fully complementary to a polynucleotide of claim 0
0 16. A method of generating a mammalian immune response directed to a protein of Figure 2, the method
0 comprising:
exposing cells of the mammal's immune system to a portion of
a) a 191P4D12(b)-related protein and/or
b) a nucleotide sequence that encodes said protein,
whereby an immune response is generated to said protein.
17. A method of generating an immune response of claim 16, said method comprising:
providing a 191P4D12(b)-related protein that comprises at least one T cell or at least one B cell epitope; and,
contacting the epitope with a mammalian immune system T cell or B cell respectively, whereby the T cell or B cell
is activated.
18. A method of claim 17 wherein the immune system cell is a B cell, whereby the induced B cell generates
antibodies that specifically bind to the 191P4D12(b)-related protein.
19. A method of claim 17 wherein the immune system cell is a T cell that is a cytotoxic T cell (CTL), whereby
the activated CTL kills an autologous cell that expresses the 191P4D12(b)-related protein.
A method of claim 17 wherein the immune system cell is a T cell that is a helper T cell (HTL), whereby
the activated HTL secretes cytokines that facilitate the cytotoxic activity of a cytotoxic T cell (CTL) or the antibody-producing
activity of a B cell.
21. A method for detecting, in a sample, the presence of a 191P4D12(b)-related protein or a 191P4D12(b)-
related polynucleotide, comprising steps of:
contacting the sample with a substance that specifically binds to the 191P4D12(b)-related protein or to the
191P4D12(b)-related polynucleotide, respectively; and,
determining that there is a complex of the substance with the 191P4D12(b)-related protein or the substance with
the 191P4D12(b)-related polynucleotide, respectively.
22. A method of claim 21 for detecting the presence of a 191P4D12(b)-related protein in a sample
OO comprising steps of:
contacting the sample with an antibody or fragment thereof either of which specifically bind to the 191P4D12(b)-
1 related protein; and,
determining that there is a complex of the antibody or fragment thereof and the 191P4D12(b)-related protein.
23. A method of claim 21 further comprising a step of:
taking the sample from a patient who has or who is suspected of having cancer.
24. A method of claim 21 for detecting the presence of a protein of Figure 2 mRNA in a sample comprising:
CN producing cDNA from the sample by reverse transcription using at least one primer;
Samplifying the cDNA so produced using 191P4D12(b) polynucleotides as sense and antisense primers, wherein
the 191P4D12(b) polynucleotides used as the sense and antisense primers serve to amplify a 191P4D12(b) cDNA; and,
0 detecting the presence of the amplified 191P4D12(b) cDNA.
A method of claim 21 for monitoring one or more 191P4D12(b) gene products In a biological sample from
a patient who has or who is suspected of having cancer, the method comprising:
determining the status of one or more 191P4D12(b) gene products expressed by cells in a tissue sample from an
individual;
comparing the status so determined to the status of one or more 191P4012(b) gene products in a corresponding
normal sample; and,
identifying the presence of one or more aberrant gene products of 191P4D12(b) in the sample relative to thenormal sample.
26. The method of claim 25 further comprising a step of determining if there are one or more elevated geneproducts of a 191P4D12(b) mRNA or a 191P4D12(b) protein, whereby the presence of one or more elevated gene products
in the test sample relative to the normal tissue sample indicates the presence or status of a cancer.
27. A method of claim 26 wherein the cancer occurs in a tissue set forth in Table I.
28. A composition comprising:
a substance that a) modulates the status of a protein of Figure 2, or b) a molecule that is modulated by a protein ofFigure 2, whereby the status of a cell that expresses a protein of Figure 2 is modulated.
29. A composition of claim 28, further comprising a physiologically acceptable carrier.
A pharmaceutical composition that comprises the composition of claim 28 In a human unit dose form.
31. A composition of claim 28 wherein the substance comprises an antibody or fragment thereof thatspecifically binds to a protein of Figure 2.
258
32. An antibody or fragment thereof of claim 31, which is monoclonal.
33. An antibody of claim 31, which is a human antibody, a humanized antibody or a chimeric antibody.00
34. A non-human transgenic animal that produces an antibody of claim 31.
A hybridoma that produces an antibody of claim 32.
LC 36. A method of delivering a cytotoxic agent or a diagnostic agent to a cell that expresses a protein of Figure
2, said method coriprising:
providing the cytotoxic agent or the diagnostic agent conjugated to an antibody or fragment thereof of claim 4; and,
exposing the cell to the antibody-agent or fragment-agent conjugate.
37. A composition of claim 28 wherein the substance comprises a polynucleotide that encodes an antibody
00 or fragment thereof, either of which immunospecifically bind to a protein of Figure 2.
38. A composition of claim 28 wherein the substance comprises a) a ribozyme that cleaves a polynucleotide
having a 191P4D12(b) coding sequence, or b) a nucleic acid molecule that encodes the ribozyme; and, a physiologically
acceptable carrier.
39. A composition of claim 28 wherein the substance comprises human T cells, wherein said T cells
specifically recognize a 191P4D12(b) peptide subsequence in the context of a particular HLA molecule.
A method of inhibiting growth of cancer cells that express a protein of Figure 2, the method comprising:
administering to the cells the composition of claim 28.
41. A method of claim 40 of Inhibiting growth of cancer cells that express a protein of Figure 2, the method
comprising steps of:
administering to said cells an antibody or fragment thereof, either of which specifically bind to a 191P4D12(b)-
related protein.
42. A method of claim 40 of inhibiting growth of cancer cells that express a protein of Figure 2, the method
comprising steps of:
administering to said cells a 191P4012(b)-related protein.
43. A method of claim 40 of inhibiting growth of cancer cells that express a protein of Figure 2, the method
comprising steps of:
administering to said cells a polynudeotide comprising a coding sequence for a 191P4012(b)-related protein or
comprising a polynucleotide complementary to a coding sequence for a 191P4D12(b)-related protein.
44. A method of claim 40 of inhibiting growth of cancer cells that express a protein of Figure 2, the method
comprising steps of:
I
administering to said cells a ribozyme that cleaves a polynucleotide that encodes a protein of Figure 2.
A method of claim 40 of inhibiting growth of cancer cells that express a protein of Figure 2 and a00 particular HLA molecule, the method comprising steps of:
0administering human T cells to said cancer cells, wherein said T cells specifically recognize a peptide subsequenceof a protein of Figure 2 while the subsequence is in the context of the particular HLA molecule.
46. A method of claim 40, the method comprising steps of:
Sadministering a vector that delivers a nucleotide that encodes a single chain monoclonal antibody, whereby theencoded single chain antibody is expressed intracellularly within cancer cells that express a protein of Figure 2.
00
CO
CO0
C
Figure 1: 19P4D)12(b) SSH sequence of 223 nucleotides. (SEQ ID NO: 1)
1 GATCACTAAT TCAAGGCTCT TCTGGATGTT TCTCTGGGTT GGGGCTGG.G TTCAATGAGG00
61 TTTATTTTTA GCTGGCCCAC CCAGATACAC TCAGCCAGAA TACCTAGATT TAGTACCCAA
121 ACTCTTCTTA GTCTGAAATC TGCTGGATTT CTGGCCTAAG GGAGAGGCTC CCATCCTTCG
181 TTCCCCAGCC AGCCTAGGAC TTCGAATGTG GAGCCTGAAG ATC
00
Figure 2:
00 ~Figure 2A. The cDNA (SEQ ID. NO.: 2) and amino acid sequence (SEQ ID. NO.: 3) of 191 P4D1 2(b) v.11 cloneW A. The start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 Including the stop codon.
121 tcctggaacagggggtagattcgtctctcgg
C-]181 catctatagdgacgcccagaaccggactaaa
1 M P L S L G A E M W G P E241 gcggattcttacAGCCTTCTGACGGTTGGCT
14 AW LL LL L L L AS T G RC P AG ECl301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTACAGGCCGGTGCCCCGCGGGTG
cI34 L ET S D V V T VV L G Q D A K L P C F00 361 AGTGGCTAAGGTATTGTCGGCGAGAACGCTC
54 Y RG D S GE Q VG Q VA WA RV DA G
74 E G A Q E L A L L H S K Y 0 L H V S P A481 GCAGCCCGACACCATCATCATCGCTAGGGCG
94 Y E G R V E Q P P P P R N P L D G S V L541 CTAGGGCCTGGACGCCCCCCACCTGC3CCGG
114 L R N A V Q A D E G 2 Y E C R V S T P P601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGTAGC!CCTTCC
134 A G SFP Q A R L R L R VL V P P L P S L661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A LE EGOQ G.b T LbAA SC T A721 TGATCCTGGTCCAGCACTAGAAGAGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S P A P S V T W D T E V K G T T S S781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGACACGGAGGTCWGGCACACGTCCA
194 R S F K H S R S A A V T S E F H L V P G841 GCCGTTCCtTCAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTCCACTTGGTGCCTA
214 R S M N G Q P L T C V V S H P G L L Q D9021 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTTGTCCCATCCTGCCTGCTCCAGO
234 Q R I T H I L H V S F L A E A S V R G L961 ACCAAAGGATCACCCACATCCTCACGTGTCCTCCTTGCTGAGCCTCTGTQAGGGC
254 E D Q N L W H I G R E G A M L K C L S E1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAGTGCCTGAGTG7
274 G Q P P P S Y N W T R L D2 G P L P S a V1081 AAGCGCCTCTAAACGACCGTGTGCTTCCGGG
294 R V D2 G D T L G F P P L T T E H S G I. y1141 TAGGGAGGAATTGCTCCCATACCGGAACGAC
314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGT'GGATGTTC
334 D P Q E D S G K Q V D L V S A. S V V V V
00 1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGITGGTGGTGG
354 QGV I A A L L F C L L V VV V VL M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTICATGTCCC
374 Y HR RK AQ Q MT QK Y EE E L TL T
S 1381 GATACCATCGGCOCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E NS I R RL H SH HT D PR S Q P E
Cl1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGACCCCAGGACiC:CAGCCGG
414 9 S V G L R A E G H P D S L K D N S S C
is501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAkC!AGTAGCT
434 S V MS E E P EG R S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCAC.GGTGAGGG
Cl 454 1 E T Q T E LLS P G S G R AE E E E D00
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAkGGAGGAAG
474 Q D E G IK Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N G I Y I N G R G H L V*
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattt',:agctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgalgtctctcc
1981 caccatgcatgcaggtcactgtytgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcctgaa
2221 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2701 tgggactttaagtgtacaccactgtgcctgctttgaatctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaagyggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatatggtgttggggagagagaga
3 06.1 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagctgg~ccacccagatacactc
3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
00 331gctagaagtcactctccacactgatcattg331Cctagaagtcct)tgtc~g~aCtgat~attg3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 213. The cDNA, (SEQ ID. NO. 4) and amino acid sequence (SEQ ID. NO. 5) of 191 P4DI12(b) v.2. The
start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
.121 tccccztagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
00 1 M4 P L S LG A E M W G P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A WL L L L L L L AS F T G R C PA G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C L
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCC
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S P A P S V T W D T E V K G T T S S
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA
194 R S F K H S R S A A V T S E F H L V P S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S M N G Q P L T.C VV S H P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H V S F L A E A S V R G L
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D Q N L W H I G R E G A M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q P P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R V D G D T L G F P P L T T E H S G I Y
00 1141a TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACkGCGGCATCT
314 V C H V S N' E F S S R D S Q V T V D V L
c-I 1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
334 D P Q E D S G K QV D L V S A S V V VV
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
354 G V I A A L L F C L L V V V V V L M S R
c-I1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCC374 Y H R R K A Q Q M T 0 K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
c-I394 R E N S I R R L H S H H T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
N 414 E SV GL RA E GHP D S L K DN S S C00
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACACAGTAGCT
-I434 S V M S E E PE G R S Y S T L T T VR E
1561 GCCGGTATAGGCGGGCGATATCCCGCAGTAG
454 I E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGGAAG
474 Q. D E G I K QA M NH F V Q E N G-TL R
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAAT'GGGACCCTAC
494 A K P T G N G I Y I N G R G H L V
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacaccccatttcttgcggaagatgctccccat(ccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaatt~gagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgi31gtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtga~c4tctgctgaa
2221 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2701 tgggaCtttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gactggtatatagaattctccattttaactg
3001 gatgtgacgtaaggtcttcaatggtgggggg
00 3061 gcggtaaacaaatgattagggtagaggtggt
3121 agagccttcctgttgatatatagccttgttt
3181 tcggtggtggtatagtttttgtgcacaaaat
3241 agcgaacaatatccacttctgcgattcgatc
3301 ggcaggggccctctgtccacactgatcattg
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2C. The cDNA (SEQ ID. NO. 6) and amino acid sequence (SEQ ID. NO. 7) of 191 P4D12(b) The
C1start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
00 00 1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
1 M P L S L G A E M W G P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P 1C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCAGCCCGACACCATCATCATCGCTAGGGCG
94 Y E G R V E Q P P PP R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGOAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S P A P S V T W D T E V K G T T S S
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAGGCACAACGTCCA
194 R S F K H S R S A A V T S E F H L V P S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S M N G Q P L T C V V S H P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H V S F L A E A S V R G L
6/77
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D 0 N L W H I G R E G A M L K C L S E
00 1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q P P P S Y NW TR LD G P L P S G V
CI1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R. V D G D T L G F P P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACT'TTGGGCTTTCCCCCACTGACCACTGAGCAC.GCGGCATCT
314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTG-TGGATGTTC
334 D P 0 E D S G K Q V D L V S A S V V V V
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGC',TGGTGGTGG
cI354 G V I A AL L F C L L V VV V V I M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGC.TCATGTCCC
374 Y H R R K A Q Q M T Q K YE E E 1 T L T
*1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 RE Nq S IR R. L H S H H T D P R SQ P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGA GCCAGCCGG
414 E S V G L R. A E G H P D S L K D 14 S S C
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCT
434 S V M S E E P E G R S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCAkCGGTGAGGG
454 1 E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGG1AGGAGGAAG
474 Q D E G I K Q A M N H F V Q E N G T L R.
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N G I Y I N~ G R G H L VI
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGCACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacaccccatttcttgcggaagatgctCCCcatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcttgtgtgtcatgtggctgtgtgtgacctctgcctgaa
2221 aaagcaggtattttctcag&ccccagagcagtattaatgatgcagaggtt.ggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctcctagtagc
00
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagctggcccacccagatacactc
3241 agccagaatacctaaatttaatacccaaactcttctta-tct-aaatcf- ct atttct3301 ggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
00
Figure 2D. The cDNA (SEQ ID. NO. 8) and amino acid sequence (SEQ ID. NO. 9) of 191 P4DI 2(b) vA The
start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
I M P L S L G A E M W G P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
j4 L E T S D V V T V V L G Q D A X L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L. R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAA CGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCACGCGCGGCTGCGGCTCCGAGTGCTGGTGCCT6CCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S P A P S V T W D T E V K G T T S S781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA
194 R S F K H S R S A A V T S E F H L V P S
8/77
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S M N G Q P L T C V V S H P G L L Q D
00 901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H VS F L AEBAS V R GL
CI961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D Q N L W H I G RE GCAM L K C L S E
S1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q P P P S) Y N W T R L D G P L P S G V
C-I1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R V D G D T L G F P P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACTTTGGCTTTCCCCCACTGACCACTGAGCACA..GCGGCATCT
314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGCGATTCTCAGGTCACTGTGGATGTTC
cI334 D P Q E D S G K Q VD L V S A S V V VV00
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGC;TGGTGGTGG
ci 354 G V I A A LL F C L L V V VV V liM S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGC:TCATGTCCC
*374 Y H R R. K A Q Q M T Q K Y E E E Li T L T
*1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAG(.TGACCCTGA
394 R. E N S I R R. L H S H H T D P R S Q P E
1441 CCAGGGAGAA.CTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
414 E S V G L R A E G H P D S L K D 11 S S C
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGA CAACAGTAGCT
434 S V M S E E P E G P. S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCAkCGGTGAGGG
454 1 E T Q T E L' L S P G S G R. A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGGAAG
474 Q D E G I K QAM N HF V QE N GTLR
166 1 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N4 G I Y I N G R. G H L *V
1741. GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcctgaa
22 21 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctgga.atctgcctcc
2341 agtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
9/77
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
00 2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
Ct 2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagctggcccacccagatacactc
00 3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
3301 ggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2E. The cDNA (SEQ ID. NO.: 10) and amino acid sequence (SEQ ID. NO. :Ii) of 191 P401 2(b) v.5. The
start methionine is underlined. The open reading frame extends from nudleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
1 M P L S L G AE M W G P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E *Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGC:AGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
10/77
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCITCCTGCACAG
174 E G S P A P S V T W D T E V K G T T S S
00 781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA
194 R S F K H S R S A A V T S E F H li V P S
214 RS MN G Q P L TC V VS H P G IL LQ0D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCC.TGCTCCAGG
234 Q R I T H I L H V S F L AE A S Vr RG L
961* ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGITGAGGGGCC
254 E D Q N L W H I G R E G A M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
c-I274 G Q P P P S Y N W T R L D G P L I? S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGC CCAGTGGGG
00294 R VD G D T L G F P P L T T El H*1 G I Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAIGCGGCATCT
cI314 V C.l V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTG'TGGATGTTC
334 D P Q E Dl S G K Q V D L V S A S V V V V
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGI3TGGTGGTGG
354 G V I A A L L F C L L V V V V V L~ M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCC
374 Y H R R K A Q Q M T Q K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E N S I R R L H S H H. T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
414 E S V G L R A E G H P D S L K D N S S C
1501. AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCT
434 S V M S E E P E G R S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCACGGTGAGGG
454 1 E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAG-GAGGAGGAAG
474 Q D E G I K Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAAT'GGGACCCTAC
494 A K P T G N G I Y I N G R G H L V
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTC;GTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgaxgtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgac(tctgcctgaa
11/77
2221 aaagcaggtaltttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
00 2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcct~fggctcaagcaatcctcctgcctcagactccctagtagc
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
__2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
C12881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
003001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
rN2 3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagctggcccacccagatacactc
3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
3301 ggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2F. The cDNA (SEQ ID. NO. 12) and amino acid sequence (SEQ ID. NO. :13) of 191 P4112(b) v.6. Thestart methionine is underlined. The open reading frame extends from nucleic acid 789-1676 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgctactgctggcatcatttacaggccggtgccccgcgggtg
241 agctggagacctcagacgtggtaactgtggtgctgggccaggacgcaaaactgccctgct
301 tctaccgaggggactccggcgagcaagtggggcaagtggcatgggctcgggtggacgcgg
361 gcgaaggcgcccaggaactagcgctactgcactccaaatacgggcttcatgtgagcccgg
421 cttacgagggccgcgtggagcagccgccgcccccacgcaaccccctggacggctcagc
481 tctccagatcgcgtaggggagggcgtacctc
541 cccgcgtcagggcggctcatcgtctccgcta
601 tgactgcaccaagggcagctactgactcgaa
661 ctagcgcacccgggctggccggtaagaactc
721 gcgtctagatcgttcgcgcctaatcatgtct
1 M N G Q P L T C V V S H P G L L Q D781 gcgacTATGcGCCGCTGGGTTCACTGCGTCG
19 Q R I T H I L H V S F L A E A S V R G'L
841 ACC AAGGATCACCCACATCCTCCACGTGTCCTCCTTCTGAGGCCTCTGTGAGGGGCC
12/77
39 E D Q N L W H I G R E G A M L K C L S R
901 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
00 59 G Q P P P S Y N W T R L D G P L P S G V
961 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGG
79 R V D G D T L G F P P L T T E H S G I Y
1021 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
99 V C H V S N 'E F S S R D S Q V T V D V L
1081 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
119 D P Q E D S G K Q V D L V S A S V V VV
1141 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
139 G V I A A L L F C L L V V V V V L M S R
1201 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGT4CTCATGTCCC
Cl159 Y H R R K AQ Q M T Q K Y E EE L T L T
1261 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGACICTGACCCTGA
00 179 R E N S I R R L H S H H T D P R S Q P E
1321 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGG3AGCCAGCCGG
199 E S V G L R A E G H P D S L K D N S S C-
1381 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGA(:AACAGTAGCT
219 S V M S E E P E G R S Y S T L T T V R E
1441 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCACGGTGAGGG
239 1 E T Q T E L L S P G S G R A E E E E D
1501 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAG"GAGGAGGAAG
259 Q D E G I K Q A M N H F V Q E N G T L R
1561 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
279 A K P T G N G I Y I X G R G H L V
1621 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGACCCa
1681 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1741 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1801 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1861 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
1921 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
1981 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttcIagtggttgcgt
2041 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcctgaa
2101 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggtxtggaggagaga
2161 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
2221 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtqltgaagcagcca
2281 gtccctgggtcagccagaggcttgaactgttacagaagccctctgcccl:ctggtggcctc
2341 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg,
2401 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2461 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2521 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2581 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
13/77
2641 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2701 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
00 2761 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2821 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
2881 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
2941 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3001 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3061 tctgggttggggctggayttcaatgaggtttatttttagctggcccacccagatacactc
3121 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
3181 ggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtgga
__3241 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3301 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
00 Figure 2G. The cDNA (SEQ ID. NO.: 14) and amino acid sequence (SEQ ID. NO.: 15) of 191P4D12(b) v.7. Thestart methionine is underlined. The open reading frame extends from nucleic acid 264-1721 Including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
1 M P L S L G A E M W G P E
241 gctgggcagtctgcctttaATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
34 L E T S -D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCACAGGCCGCACATGGCATGAGGTGGGAGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S PA P S V TW D T E V K G T T S S
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGC-ACAACGTCCA
194 R S F K H S R S A A V T S E F H L VP S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
14/77
214 R S M N G Q P L T C V V S H P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H V S F L A E A S V R G L00
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D Q N L W H I G R E G A M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q p P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
c-i294 R V D G D T L G F P P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
314 V C H V S N E F S S R D S Q V T V D V L
c-i1201 ACGtCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTCc-i334 D P Q E D S G K Q V D L V S A S V V V V
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
00 354 G V I AA L L F C L L V VV V VL M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGT'GCTCATGTCCC
374 Y H R R K A Q Q M T Q K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGA-GCTGACCCTGA
394 R E N S I R R L H S H H T D P R S Q S E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCACGAGCCAGAGTG
414 E P E G R S Y S T L T T V R E I E T Q T
1501 AAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCACGGTGAGGGAGAT'AGAAACACAGA
434 E L L S P G S G R A E E E E D Q D E G I
1561 CTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGGAAGATCAGGATGAAGGCA
454 K Q A M.N H F V Q E N G T L R A K P T G
1621 TCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTACGGGCCAAGCCCACGG
474 N G I Y I N G R G H L V
1681 GCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGAcccaggcctgcctcccttc
1741 cctaggcctggctccttctgttgacatgggagattttagctcatcttggfgggcctcctta
1801 aacacccccatttcttgcggaagatgctccccatcccactgactgcttgacctttacctc
1861 caacccttctgttcatcgggagggctccaccaattgagtctctcccacc!atgcatgcagg
1921 tcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactgtgtgltgtgtggaggg
1981. gtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatgctgt.catatcagagt
2 041 caagtgaactgtggtgtatgtgccacgggatttgagtggttgcgtgggcaacactgtcag
2101 ggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcctgaaaaaylcaggtattttc
2161 tcagaccccagagcagtattaatgatgcagaggttggaggagagaggtcggagactgtggc
2221 tcagacccaggtgtgcgggcatagctggagctggaatctgcctccggtqjtgagggaacct
2281 gtctcctaccacttcggagccatgggggcaagtgtgaagcagccagtccctgggtcagcc
2341 agaggcttgaactgttacagaagccctctgccctctggtggcctctggqcctgctgcatg
2401 tacatattttctgtaaatatacatgcgccgggagcttcttgcaggaatatctgctccgaat
2461 cacttttaatttttttcttttttttttcttgccctttccattagttgtattttttattta
2521 tttttatttttatttttttttagagatggagtctcactatgttgctcaggctggccttga
15/77
2581 actcctgggctcaagcaatcctcctgcctcagcctccctagtagctgggactttaagtgt
2641 acaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaaattaaagaaagcctt
00 2701 tagatttatccaatgtttactactgggattgcttaaagtgaggcccctccaacaccaggg
2761 ggttaattcctgtgattgtgaaaggggctacttccaaggcatcttcatgcaggagcccc
2821 ttgggagggcacctgagagctggtagagtctgaaattagggatgtgagcct'cgtggttac
2881 tgagtaaggtaaaattgcatccaccattgtttgtgataccttagggaattgcttggacct
2941 ggtgacaagggctcctgttcaatagtggtgttggggagagagagagcagtgattatagac
3001 cgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtgagaatgtcgcctttc
3061 cccctgggttttggatcactaattcaaggctcttctggatgtttctctgggttggggctg
3121 gagttcaatgaggtttatttttagctggcccacccagatacactcagccagaatacctag
__3181 atttagtacccaaactcttcttagtctgaaatctgctggatttctggcctaagggagagg
3241 ctcccatccttcgttccccagccagcctaggacttcgaatgtggagcctgaagatctaag
3301 atcctaacatgtacattttatgtaaatatgtgcatatttgtacataaaatgatattctgt
003361 ttttaaataaacagacaaaacttgaaaaa
cK1Figure 2H. The cDNA (SEQ ID. NO. :16) and amino acid sequence (SEQ ID. NO. :17) of 191 P401 2(b) v.8. Thestart methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 teccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctcagccggctcccagggagatctcggtggaacttcagaaac
1 M P L S L G A E M W G P E
241 gcggattcttacAGCCTTCTGACGGTTGGCT
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGTAACTGTGGTGCTGGCCAGGACGCAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGAGTGGCATGGGCTCGGGTGGACGCGG
.74 E G, A Q E L A LL H SK Y G L H V S P A
481 GCAGCCCGACACCATCATCATCGCTAGGGCG
94 Y E G R V E Q P P P P R N P L D G S V L
541 CTAGGGCCTGGACGCCCCAGACCCGAGCCGG
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F 0 A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGACTGCACCAAGGGCGGCGCCGCGCCTCrA
174 E G S P A P S V T W D T E V K G T T S S
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACAGGTCGGCAACGTCCA
16/ 77
194 R S F K H S R S A A V T S E F H Ii V P S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACI'TGGTGCCTA
00 214 R S M N G Q P L T C V V S H P G li L Q D
01GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
C-]234 Q R I TH I L H V S F L AE A S V R G L
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTC1TGAGGGGCC
254 E D Q N L W H I G RE GA M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAGGAGCTATGCTCAG'GCCTGAGTG
C-I274 G3 Q P P P S Y N W T R L D G3 P L P S G V
1081 AAGGGCAGCCCCCTCCCTCA-TACAACTGGACACGGCTGGATGGGCCTCTG.:CCAGTGGGG
294 R V D G D T L G F P P L T T E H .3 G I Y
C-I 1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
C-]314 V C H VS N E F S S R D S Q V T V D V L
CI 1201 ACTTCAGCGATATCCTCAGATTAGCCGGAGT00
334 D PQ E D S G K Q V D LV S A S V V VV
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
354 G3 V I A A L L F C L L V V V V V L M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTCCCTTCTGGTGGTGGTGGTGGTC.CTCATGTCCC
374 HERR KA Q Q M T Q K Y E E EL T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E N S I R R L H S H H T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGCIAGCCAGCCGG
414 E S V G3 L R A E G3 H P D S L K D N S S C
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGA(:AACAGTAGCT
434 S V M S B E P E G3 R S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGAC(2ACGGTGAGGG
454 I E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGA(3GAGGAGGAAG
474 Q D E G I K Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N G I Y I N G R G H L V
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttctcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtcttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtCcgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgac~ctctgcctgaa
2221 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggt.tggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
17/77
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
00 25.21 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
Ct 2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtgctggtgacaagggctcctgttcaatagtggtgttggggagagagagagca
3001 gtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtgaga
3061 atgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttctct
3121 gggttggggctggagttcaatgaggtttatttttagctggcccacccagatacactcagc
00 3181 cagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttctggc3241 ctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtggagcc
C13301 tgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacataaa
3361 atgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 21. The cDNA (SEQ ID. NO. :18) and amino acid sequence (SEQ ID. NO. 19) of 191 P4D1 2(b) v.9 cloneBCPI. The start methlonine is underlined. The open reading frame extends from nucleic acid 708-1121 including the stop codon.
1 gtctgacccaggcctgcctcccttccctaggcctggctccttctgttgacatgggagatt
61 ttagctcatcttgggggcctccttaaacacccccatttcttgcggaagatgctccccatc
121 ccactgactgcttgacctttacctccaacccttctgttcatcgggagggctccaccaatt
181 gagtctctcccaccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgt
241 tgactgactgtgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggt
301 gtgtattatgctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttga
361 gtggttgcgtgggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacc
421 tctgcctgaaaaagcaggtattttctcagaccccagagcagtattaatgatgcagaggtt
481 ggaggagagaggtggagactgtggctcagacccaggtgtgcgggcatagctggagctgga
541 atctgcctccggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgt
601 gaagcagccagtccctgggtcagccagaggcttgaactgttacagaagccctctgccctc
1 M R R E L
661 tggtggcctctgggcctgctgcatgtacatattttctgtaaatatacATGCGCCGGAGC
6 L AG I LL R I T F N F F L F F F L P F
721 TTCTTGCAGGAATACTGCTCCGAATCACTTTTAATTTTTTTCTTTTTTTTTTCTTGCCCT
26 P L V V F F I Y F Y F Y F F L E M E S 1I
781 TTCCATTAGTTGTATTTTTTATTTATTTTTATTTTTATTTTTTTTTAGAGATGGAGTCTC
46 Y V A Q A G L E L L G S S N P P A S A S
841 ACTATGTTGCTCAGGCTGGCCTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCT
66 L V A G T L S V H H C A C F E S F T K R
901 CCCTAGTAGCTGGGACTTTAAGTGTACACCACTGTGCCTTGCGTCCTTACGAAGA
18/77
86 K K K L K K A F R F I Q C L L L G L L K
961 GAAAAAATTAAAGAAAGCCTTTAGATTTATCCAATGTTTACTACTG3GATTGCTTA
00 106 V R PLOQ H Q G VN SC D C E R '3 Y F Q
1021 AAGTGAGGCCCCTCCAACACCAGGGGGTTAATTCCTGTGATTGTGAAAGGGGCTACTTCC
CI126 G I F M Q A AP W E G T
1081 AAGACTAGAGACCTGGAGCCT~acgtggcga
1141 ttagggatgtgagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtg
1201 ataccttagggaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggg
c-I 1261 gagagagagagcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggt
1321 gctgggggtgagaatgtcgcctttccccctgggttttggatcactaattcaaggctcttc
1381 tggatgtttctctgggttggggctggagttcaatgaggtttatttttagctggcccaccc
1441 agatacactcagccagaatacctagatttagtaccaaactcttcttagtctgaaatctg
1501 ctggatttctggcctaagggagaggctcccatccttcgttccccagccagcctaggactt
1561 cgaatgtggagcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcat00
1621 atttgtacataaaatgatattctgtttttaaataaacagaeaaaacttg
Figure 2J. The cDNA (SEQ ID. NO.: 20) and amino acid sequence (SEQ ID. NO.: 21) of 191 P4D12(b) v.10. The
start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggzLgctcccgatc
61. acggcttcttgggggtagctacggctgggtgtgtagaacggggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctcgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggadtcttcagaaac
1 M P L S L G-A E M W O P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGAT(TGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGC CCCGCGGGTG
34 LOGT S D V V T VV L G QD A KL P C F
361 AGCTGGGGACCTCAGACGTGGTAACTGTGTGCTGGCCAGACGCAACTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G.
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGIGTGGACGCG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAG0AACTAGCGCTACTOCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 -Y E G R V E Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E 0 S P A P S V T W D T E V K G T T S S
19/77
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAA-CGTCCA
194 R S F K H S R S A A V T S E F H L V P S
00 842. GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S M N G Q P L TC V VS H P G L LQD
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
ct 234 Q R I t H I L H V S F L A E A S V R G L
961. ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D Q N L W H I G RE G A M L K C L S E
11021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q P P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R V D G D*T L G F P*P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
00 314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
Cl334 D P Q E D S G K Q V DL V S A S V V VV
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
354 G V I A A L L F C L L V V V V V L M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCC
374 Y H R R K A Q Q M T Q K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E N SI R R L H S HRH T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
414 E S V G L R A E G H P D S L K D N S S C
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCT
434 S V M S E E P E G R S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCACGGTGAGGG
454 I E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGGAAG
474 0 D E G I K Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAOGCATCAAACAGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N G I Y I N G R G H L V*
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcctgaa
2221 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggctcagacccaggtgtgcgggcatagctggagctggaatctgcctc
20/77
2341. ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggcctc
00 2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccattagt
2581 tgtattttttatttatttttatttttatttttttttagagatggagtctcactatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttcca.aggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
C1 3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggjtgctgggggtg.
3121 agaatgtcgcctttcccctgggttttggatcactaattcaaggctcttctggatgtttc00
3181 tctgggttggggctggagttcaatgaggtttatttttagctggcccacccatgatacactc
3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctg(:tggatttct
3301 ggcctaagggagaggctcccatccttcgttccccagccagcctaggactt( gaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcataitttgtacat
3421 aaaatgatattctgtttttaaataaa~agacaaaacttgaaaaa
Figure 2K. The cDNA (SEQ ID. NO. 22) and amino acid sequence (SEQ ID. NO. 23) of 191 P4ID12(b) v.1 1. The
start methionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacgggccggggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
1 M F L S L G AE MW G F E
241 gctgggcagtctgcctttc ccATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGGCCGGTGC.ICCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAICTGCCCTGCT
54 Y R G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAG3TGGCATGGGCTCG(3GTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTC~rGTGAGCCCGG
94 Y E G R V E Q P P F F R N P L D G S V L
541 OTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGAI:GGCTCAGTGC
114 L R NA V Q A D E GE Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V M V P P L P S L
21/77
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGATGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
00 721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S PA P S V T W D T E V K G T T S S
c-I781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA194 R S F K HS R S AA V T S E P H L V P S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S M NG Q P L T C V V S H P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H V S F L A E A S V R G L
__961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
cI254 E D Q N L W H I G RE G A M L K C L S E
1021. TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
00 274 G Q P P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
cI294 R V D G DT L G F P P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
334 D P Q E D S G K Q V D L V. S A S V V V V
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGG
354 G V I A A L L F C L L V V V V V L M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCC
374 Y H R R K A Q Q M T Q K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E N S I R R L H S H H T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
414 E S V G L R A E G H P D S L K D N S S C
1501 AGGAGAGGTAGGGCTGAGAGCCGAGGCCACCCTGATAGTCTCAAGGACAACAGTAGCT
434 S V M S E E P E G R S Y S T L T T V R E
1561 GCCGGTATAGGCGGGCGATATCCCGCAGTAG
454 I E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGGAAG
474 Q D E G I K Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAGAATGGGACCCTAC
494 A K P T G N G I Y I N G R G H L V*
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
1861 ttgggggcctccttaaacacccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
1981 caccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtattatg
22/77
2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtga~c(tctgcctgaa
00 2221 aaagcaggtattttctcagacccagagcagtattaatgatgcagaggttggaggagaga2281 ggtggagactgtggctcagacccaggtgtgcgggcata~gctggagctgg.atctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtggaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccct(tggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
2521 aatactgctccgaatcacttttaatttttttcttttttttttcttg~cctttccattagt
C12581 tgtattttttatttatttttatttttatttttttttagagatggagtct4actatgttgc
2641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagtagc
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgaggcc
2821 cctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcatctt
2881 catgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattagggatgt00
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagtggcccacccagatacactc
3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
3301 ggcctaagggagaggctcccatccttcgttcccagccagcctaggacttcgaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2L. The cDNA (SEQ ID. NO. 24) and amino acid sequence (SEQ ID. NO. 25) of 191 P4D1 2(b) v.1 2. The
start metthionine is underlined. The open reading frame extends from nucleic acid 264-1796 including the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagc tctgggggagc tcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacgggccggg-ctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcct.gccttctgggt
181 cagttccttattcaagtctgcagccggct~ccagggagatctcggtggaacttcagaaac
1 M P L S L G A E M W G P E
241 gctgggcagtctgcctttcaaccATGCCCCTGTCCCTGGGAGCCGAGAGTGGGGGCCTG
14 A W L L L L L L L A S F T G R. C P A G E
301 AGGCCTGGCTGCTG CTGCTGCTACTGCTGGCATCATTTACAGGCCGGTCQCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAA~aCTGCCCTGCT
54 Y R. G D S G E Q V G Q V A W A R V D A G
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCG;GGTG3GACGCGG
74 E G 'A Q E L A L L H S K Y G L H V S P A
481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E Q P P P P R N P L D G S V L
23/ 77
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
00 601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F Q A R L R L R V L V P P L P S L
C-I661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
174 E G S PA P S VT W D T E V K G T T S S
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA
194 R S F K H S R S. A A V T S E F H L V P S
__841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
c-I214 R S M N G Q P L T C V V S R P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
00234 Q R I T H I L H V S F L A E A S V R G L
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
c-I254 E D Q N L W H I G R E G A M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 G Q P P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R V D G D T L G F P P L T T E H S G I Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACACTGAGCAAGCGGCATCT
314 V C H.V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
334 D P Q E D S G K Q V D L V S A S V V V -V
1261 TTGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTrGG
354 G V I A A L L F C L L V V V V V L M S R
1321 TGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCC
374 Y H R R K A Q Q M T Q K Y E E E L T L T
1381 GATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGA
394 R E N S I R R L H S H H T D P R S Q P E
1441 CCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAGCCGG
414 E S V G L R A E G H P D S L K D N S S C
1501 AGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTAGCT
434 S V M S E E P E G C S Y S T L T T V R E
1561 GCTCTGTGATGAGTGAAGAGCCCGAGGGCTGCAGTTACTCCACGCTGACCACGGTGAGGG
454 1 E T Q T E L L S P G S G R A E E E E D
1621 AGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGG;AGGAG
474 Q D E G I K Q A M N H F V Q E N G T L R
1681 ATCAGGATGAAGGCATCAACAGGCCATGAACCATTTTGTTCAGGAGATGGGACCCTAC
494 A K P T G N G I Y I N G R G H L V
1741 GGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGACACCTGTCTGAccca
1801 ggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctcatc
24/77
1861 ttgggggcctccttaaaca~ccccatttcttgcggaagatgctccccatcccactgactg
1921 cttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctctcc
00 1981 caccatgcatgcaggtcacttgttgtgtgcatgtgtgcctgtgtgagtgttgactgactg
2041 tgtgtgtgtggaggggtgactgtc Cgtggagggtgacttgttccgtggttgtattatg
C1 2101 ctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttgcgt
2161 gggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacct ctgcctgaa
2221 aaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggagaga
2281 ggtggagactgtggct~cagacccagg tgtgcgggcatagctggagctggaatctgcctcc
2341 ggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtclaagcagcca
2401 gtccctgggtcagccagaggcttgaactgttacagaagccctctgccctct:ggtggcctc
2461 tgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgcagg
(712641 tcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctc:cctagtagc00
2701 tgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaaac3aaaaaaaaa
2761 attaaagaaagcctttagatttatccaatgtttactactgggattgcttaiatgaggcc
2821 cccaccaggtatcttattaaggtctcagctt
2881 catgcaggcagccccttgggagggcacctgaggctggtagagtctgaaattagggatgt
2941 gagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgataccttagg
3001 gaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagagaga
3061 gcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggggtg
3121 agaatgtcgcctttccccctgggttttggatcactaattcaaggctcttctggatgtttc
3181 tctgggttggggctggagttcaatgaggtttatttttagctggcccacccagatacactc
3241 agccagaatacctagatttagtacccaaactcttcttagtctgaaatctgctggatttct
3301 ggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgtgga
3361 gcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcatatttgtacat
3421 aaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2M. The cDNA (SEQ ID. NO. 26) and amino acid sequence (SEQ ID. NO. 27) of 191 P4D12(b) v.1 3. The
start methionine is underlined. The open reading frame extends from nucleic acid 264-1799 inclu ding the stop codon.
1 ggccgtcgttgttggccacagcgtgggaagcagctctgggggagctcggagctcccgatc
61 acggcttcttgggggtagctacggctgggtgtgtagaacggggccgggctggggctggg
121 tcccctagtggagacccaagtgcgagaggcaagaactctgcagcttcctgccttctgggt
181 cagttccttattcaagtctgcagccggctcccagggagatctcggtggaacttcagaaac
1 M P L S L G A E M WOG P E
241 gctgggcagtctgcctttcaCC ATGCCCCTGTCCCTGGGAGCCGAGAT3GGGGCCTG
14 A W L L L L L L L A S F T G R C P A G E
301 AGCCTGGCTGCTGCTGCTGCTACTGCTGGCATCATTTACAGCCGGTGCCCCGCGGGTG
34 L E T S D V V T V V L G Q D A K L P C F
361 AGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAACTGCCCTGCT
54 Y R G -D S G E Q V G Q V A W A R V D A G
25/77
421 TCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGG
74 E G A Q E L A L L H S K Y G L H V S P A
00 481 GCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGG
94 Y E G R V E Q P P P P R N P L D G S V L
541 CTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAACCCCCTGGACGGCTCAGTGC
114 L R N A V Q A D E G E Y E C R V S T F P
601 TCCTGCGCAACGCAGTGCAGGCGGATGAGGGCGAGTACGAGTGCCGGGTCAGCACCTTCC
134 A G S F QA R L R LRV LV P P L P S L
661 CCGCCGGCAGCTTCCAGGCGCGGCTGCGGCTCCGAGTGCTGGTGCCTCCCCTGCCCTCAC
154 N P G P A L E E G Q G L T L A A S C T A
__721 TGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAG
CI174 E G S PA P S V T W D T E VK G T T
781 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCA
00194 R S F KEH S R S A A VT S E F H L V P S
841 GCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTA
214 R S MN G Q P L T C V V S H P G L L Q D
901 GCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGG
234 Q R I T H I L H V S F L A E A S V R G L
961 ACCAAAGGATCACCCACATCCTCCACGTGTCCTTCCTTGCTGAGGCCTCTGTGAGGGGCC
254 E D Q N L W H I G R E G A M L K C L S E
1021 TTGAAGACCAAAATCTGTGGCACATTGGCAGAGAAGGAGCTATGCTCAAGTGCCTGAGTG
274 0 Q P P P S Y N W T R L D G P L P S G V
1081 AAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGG
294 R V DG D T L G F P P L T T E H S GI Y
1141 TACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCT
314 V C H V S N E F S S R D S Q V T V D V L
1201 ACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTC
334 A D P Q E D S G K Q V D L V S A S V V V
1261 TTGCAGACCCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGG
354 V G V I A A L L.F C L L V V V V V L M S
1321 TGGTGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGTGGTGTGTGGTGCTCATGT
374 R Y H R R K A Q Q M T Q K Y E E E L T L
1381 CCCGATACCATCGGCGCAGGCCCAGCAGATGACCCAGATATGAGGAGGAGCTGACCC
394 T R E N S I R R L H S H H T D P R S Q P
1441 TGACCAGGGAGAACTCCATCCGGAGGCTGCATCCCATCCGACCCCAGGAGCCAGC
414 E E S V G L R A E G H P D S L K D N S S
1501- CGGAGGAGAGTGTAGGGCTGAGAGCCGAGGGCCACCCTGATAGTCTCAAGGACAACAGTA
434 C S V M S E E P E G R S Y S T L T T V R
1561 GCTGCTCTGTGATGAGTGAAGAGCCCGAGGGCCGCAGTTACTCCACGCTGACCACGGTGA
454 E I E T Q T E L L S P G S G R A E E E E
1621 GGGAGATAGAAACACAGACTGAACTGCTGTCTCCAGGCTCTGGGCGGGCCGAGGAGGAGG
474 D Q D E G I K Q A M N H F V Q E N G T L
26/77
1681 AAGATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTC-AGGAG)aTGGGACCC
494 R A K P T G N G I Y I N G R G H L V
00 1741 TACGGGCCAAGCCCACGGGCAATGGCATCTACATCAATGGGCGGGGAAC( TGGTCTGAc
1801 ccaggcctgcctcccttccctaggcctggctccttctgttgacatgggagattttagctc
1861 atcttgggggcctccttaaacacccccatttcttgcggaagatgctccccaitcccactga
1921 ctgcttgacctttacctccaacccttctgttcatcgggagggctccaccaattgagtctc
1981 tcccaccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagtgttg actga
2041 ctgtgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggtgtgtatt
2101 atgctgtcatatcagagtcaagtgaactgtggtgtatgtgccacgggatttgagtggttg
2161 cgtgggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacctctgcct
2221 gaaaaagcaggtattttctcagaccccagagcagtattaatgatgcagaggttggaggag
2281 agaggtggagactgtggctcagacccaggtgtgcgggcatagctggagct~ggaatctgcc
2341 tccggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgtgaagcag
(71 2401 ccagtccctgggtcagccagaggcttgaactgttacagaagccctctgccctctggtggc00
2461 ctctgggcctgctgcatgtacatattttctgtaaatatacatgcgccgggagcttcttgc
2521 aggaatactgctccgaatcacttttaatttttttcttttttttttcttgccctttccatt
2641 tgctcaggctggccttgaactcctgggctcaagcaatcctcctgcctcagcctccctagt
2701 agctgggactttaagtgtacaccactgtgcctgctttgaatcctttacgaagagaaaaaa
2761 aaaattaaagaaagcctttagatttatccaatgtttactactgggattgcttaaagtgag
2821 gcccctccaacaccagggggttaattcctgtgattgtgaaaggggctacttccaaggcat
2881 cttcatgcaggcagccccttgggagggcacctgagagctggtagagtctgaaattaggga
2941 tgtgagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtgatacctt
3001 agggaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggggagagag
3061 agagcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggtgctgggg
3121 gtgagaatgtcgcctttccccctgggttttggatcactaattcaaggctC'ttctggatgt
3181 ttctctgggttggggctggagttcaatgaggtttatttttagctggccca.ccagataca
3241 ctcagccagaatacctagatttagtacccaaactcttcttagtctgaaat.ctgctggatt
3301 tctggcctaagggagaggctcccatccttcgttccccagccagcctaggacttcgaatgt
3361 ggagcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgCcatatttgta
3421 cataaaatgatattctgtttttaaataaacagacaaaacttgaaaaa
Figure 2N. The cDNA (SEQ ID. NO.: 28) and amino acid sequence (SEQ ID. INO.: 29) of 191 P4DI2(b) v.14. The
start methionine is underlined. The open reading frame extends from nucleic acid 708-1121 including the stop codon.
1 gtctgacccaggcctgcctcccttccctaggcctggctccttctgttgac.atgggagatt
61 ttagctcatcttgggggcctccttaaacacccccatttcttgcggaagatgctccccatc
121 ccactgactgcttgacctttacctccaacccttctgttcatcgggaggg(.tccaccaatt
181 gagtctctcccaccatgcatgcaggtcactgtgtgtgtgcatgtgtgcctgtgtgagftgt
241 tgactgactgtgtgtgtgtggaggggtgactgtccgtggaggggtgactgtgtccgtggt
301 gtgtattatgctgtcatatcagagtcaagtgaactgtggtgtatgtgccaicgggatttga
361 gtggttgcgtgggcaacactgtcagggtttggcgtgtgtgtcatgtggctgtgtgtgacc
27/77
421 tctgcctgaaaaagcaggtattttctcagaccccagagcagtattaatgatgcagaggtt
481 ggaggagagaggtggagactgtggctcagacccaggtgtgcgggcatagctggagctgga
00 541 atctgcctccggtgtgagggaacctgtctcctaccacttcggagccatgggggcaagtgt
601 gaagcagccagtccctgggtcagccagaggcttgaactgttacagaagccctctgccctc
1 M R RE L
661 tggtggcctctgggcctgctgcatgtacatattttctgtaaatatacATGCGCCGGGAGC
6 L AG I LL R I T F N F F L F F F L P F
721 TTCTTGCAGGAATACTGCTCCGAATCACTTTTAATTTTTTTCTTTTTTTTTTCTTGCCCT
26 P L V V F F I Y F Y F Y F F L E M E S H
781 TTCCATTAGTTGTATTTTTTATTTATTTTTATTTTTATTTTTTTTTAGAGATGGAGTCTC
46 Y V A Q A G L E L L G S S N P P A S D S
841 ACTATGTTGCTCAGGCTGGCCTTGAACTCCTGGGCTCAAGCAATCCTCCTGCCTCAGACT
66 L VA G T L S V H H C A C F E S F T KR
00 901 CCCTAGTAGCTGGGACTTTAAGTGTACACCACTGTGCCTGCTTTGAATCCTTTACGAAGA
86 K K K L K K AF R F I Q C L L L G L L K
CI961 GAAAAAATTAAAGAAAGCCTTTAGATTTATCCAATGTTTACTACTGGGATTGCTTA
106 V R P L Q H Q G V N S C D C E R G Y F Q
1021 AAGTGAGGCCCCTCCAACACCAGGGGGTTAATTCCTGTGATTGTGAAAGGGGCTACTTCC
126 G I F M Q A A P W E G T
1081 AAGGCATCTTCATGCAGGCAGCCCCTTGGGAGGGCACCTGAgagctggtagagtctgaaa
1141 ttagggatgtgagcctcgtggttactgagtaaggtaaaattgcatccaccattgtttgtg
1201 ataccttagggaattgcttggacctggtgacaagggctcctgttcaatagtggtgttggg
1261 gagagagagagcagtgattatagaccgagagagtaggagttgaggtgaggtgaaggaggt
1321 gctgggggtgagaatgtcgcctttccccctgggttttggatcactaattcaaggctcttc
1381 tggatgtttctctgggttggggctggagttcaatgaggtttatttttagctggcccaccc
1441 agatacactcagccagaatacctagatttagtacccaaactcttcttagtctgaaatctg
1501 ctggatttctggcctaagggagaggctcccatccttcgttccccagccagcctaggactt
1561 cgaatgtggagcctgaagatctaagatcctaacatgtacattttatgtaaatatgtgcat
1621 atttgtacataaaatgatattctgtttttaaataaacagacaaaacttg
28/77
Figure 3:
Figure 3A. Amino acid sequence of 191P4D12(b) v.1 (SEQ ID. NO.: 30). The 191P4DI2(b) 0. clone W~ protein has 510 amino
acids.
1 MPLSLGAEMW GPEAWLLLLL LLLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGE
00
61
121
181
241.
QVGQVAWARV
DEGEYECRVS
VTWDTEVKGT
HVSFLAEASV
DAGEGAQELA~
TFPAGSFQAR
LLHSKYGLHV S PAYEGRVEQ
LRLRVLVPPL
TSSRSFKIISR SAAVTSEFHL
301 GFPPLTTEHS
361 PCLLVVVVVL
421 EGHPDSLKDN
RGLEDQNLWH
GIYVCHVSNE
MSRYHRRKAQ
SSCSVMSEEP
IGREGAMLKC
FS SRDSQVTV
QMTQKYEEEL
EGRSYSTLTT
PSLNPGPALE
VPSRSMNGQP
LSEGQPPPSY
DVLDPQEDSG
TLTRENS IRR
VRE IETQTEL
PPPPRNPLDG
EGQGLTLAAS
LTCVVSHPGL
NWTRLDGPLP
KQVDLVSASV
LHSHHTDPRS
LSPGSGRAEE
SVLLRNAVQA
CTAEGS PAPS
LQDQRITHIL
SGVRVDGDTL
VVVGVIAALL
QPEESVGLRA
EEDQDEGIKQ
481 AMNHFVQEMG TLRAKPTGNG IYINGRGHLV
Figure 3B. Amino acid sequence of 191 P4D1 2(b) v.2 (SEQ ID. NO. The 191 P4D1 2(b) v.2 protein has 5 10 amino acids.
1
61
121
181
241
301
361
421
MPLSLGAEMW
QVGQVAWARV
DEGEYECRVS
VTWDTEVKGT
HVSFLAEASV
GFPPLTTEHS
FCLLVVVVVL
EGHPDSLKDN
GPEAWLLLLL
DAGEGAQELA
TFPAGS FQAR
TSSRSFKHSR
RCLEDQbNLWH
GIYVCI4VSNE
MSRYHRRKAQ
SSCSVMSEEP
LLASFTGRCP AGELETSDVV
LLHSKYGLHV
LRLRVLVPPL
SAAVTSEFHL
IGREGAMLKC
FS SRD SQVT V
QMTQKYEEEL
EGRSYSTLTT
SPAYEGRVEQ
P SLNPG PALE
VPSRSMNGQP
LSEGQPPPSY
DVLDPQEDSG
TLTREWS IRR
VRE IETQTEL
TVVLGQDAKL
PPPPRNPLDG
EGQGLTLAAS
LTC'VVSHPGL
NWTRLDGPLP
KQVIDLVSASV
LHSHHTDPRS
LS PGSGRAEE
PCLYRGDSGE
SVLLRNAVQA
CTAEGSPAPS
LQDQRITHIL
SGVRVDGDTL
VVVGVIAALL
QPEESVGLRA
EEDQDEGI KQ
481 AMvNHFVQENG TLRAKPTGNG IYINGRGHLV
Figure 3C. Amino acid sequence of 191 P4D12(b) v.6 (SEQ ID. NO. 32). The 191P4D12(b) v.6 protein has 295 amino acids.
1 MNGQPLTCWV SHPGLLQDQR ITHILHVSFL AEASVRGLED QNLWHIGREG AMLKCLSEGQ
61 PPPSYNWTRL DGPLPSGVRV DGDTLGFPPL TTEHSGIYVC I{VSNEFSSRD SQVTVDVLDP
121 QEDSGKQVDL VSASVVVVGV IAALLFCLLV VVVVLMSRYH RRICAQQMTQK YEEELTLTRE
181 NSIRRLHSHH TDPRSQPEES VGLRAEGEPD SLKDNSSCSV MSEEPEGRSY STLTTVREIE
241 TQTELLSPGS GRAEEEEDQD EGIKQAMNHF VQENGTLRAK PTGNqGIYING RGHLV
Figure 31). Amino acid sequence of 191 P4D12(b) v.7 (SEQ ID. NO. The 191 P4D1 2(b) v.7 protein has 485 amino acids.
1 MPLSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGE
61 QVGQVAW.ARV DAGEGAQELA LLHSKYGLHV SPAYEGRVEQ PPPPRINPLDG SVLLR.NAVQA
121 DEGEYECRVS TFPAGSFQA. LRLRVLVPPL PSLNPGPALE EGQGLTLAAS CTAEGSPAPS
29177
00
181 V'TWDTEVKGT TSSRSFKHSR SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL
241 HVSFLAEASV RGLEDQNLWH IGREGAMLKC LSEGQPPPSY NWTRLDGPLP
301 GFPPLTTEHS GIYVCH-VSNE FSSRDSQVTV DVLDPQEDSG KQVDLVSASV
361 FCLLVVVVVL MSRYHRRKAQ QMTQKYEEEL TLTREUSIRR LHSH-TDPRS
421 STLTTVREIE TQTELLSPGS GRAEEEEDQD EGIKQANNHF VQENGTLRAK
481 RGHLV
LQDQRITHIL
SGVRVDGDTL
VVVGVIAALL
QSEEPEGRSY
PTGNGIYING
Figure 3E. Amino acid sequence of 191130D12(b) v.10 (SEQ ID. NO.: 34). The 191P4D12(b) 0.0 protein has 510 amino acids.
61
121
1181
241
301
361
421
481
MPLSLGAEMW
QVGQVAWARV
DEGEYECRVS
VTWDTEVKGT
HYS FJAEASV
GFPPLTTEHS
FCLLVVXTVVL
EGHPDSLKDN
AMVNHFVQENG
GPEAWLLLLL
DAGEGAQELA
TFPAGSFQAR
TSSRSFKHSR
RGLEDQNLWH
GIYVCHVSNE
MSRYHRRKAQ
SSCSVMSEEP
TLR-AKPTGNG
LLASFTGRCP
LLHSKYGLHV
LRLRVLVPPL
SAAVTSEFHL
IGREGAMLKC
FS SRDSQVTV
QMTQKYEEEL
EGRSYSTLTT
TYTNGRGHLjV
AGELGTSDVV
S PAYEGRVEQ
PSLNPGPALE
VPSRSMNGQP
LSEGQPPPSY
DVLDPQEDSG
TLTRENS IRR
VREIETQTEL
TVVLGQDAKL
PPPPRNPLDG
EGQGLTLAAS
LTCVVSHPGL
NWTRLDGPLP
KQVDLVSASV
LHSHHTDPRS
LSPGSGRAEE
PCFYRGDSGE
SVLLRNAVQA
CTAEGS PAPS
LQDQRITHIL
SGVRVDGDTL
VVVGVIAALL
QPEESVGLRA
EEDQDEGIKQ
Figure 3F. Amino acid sequence of 191P4Dl2(b) v.11 (SEQ ID. NO.: 35). The 191P4D12(b) v.11 protein has 510 amino acids.
1 MPLSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL PCFYRGDSGE
*61
121
181
241
301
361
421
481
QVGQVAWARV
DEGEYECRVS
VTWDTEVKGT
HVSFLAEASV
GFPPLTTEHS
FCLLVVVVVL
EGHPDSLKDN
AMNHFVQENG
DAGEGAQELA
TFPAGSFQAR
TSSRSFKHSR
RGLEDQNLWH
GIYVCHVSNE
MSRYHRRKAQ
SSCSVMSEEP
TLRAKPTGNG
LLHSKYGLIV
LRLRVMVPPL
SAAVTSEFHL
IGREGAMLKC
FS SRDSQVTV
QMTQKYEEEL
EGRSYSTLTT
IYINGRGHLV
S PAYEGRVEQ
PSLNPGPALE
VPSRSMNGQP
LSEGQPPPSY
DVLDPQEDSG
TLTRENS IRR
VREIETQTEL
PPPPRNPLDG
EGQGLTLAAS
LTCVVSHPGL
NWTRLDGPLP
KQVDLVSASV
LHSHHTDPRS
LS PGSGRAEE
SVLLRNAVQA
CTAEGS PAPS
LQDQRITHIL
SGVRVDGDTL
VVVGVIAAL 2
QPEESVGLRA
EEDQDEGI KQ
Figure 3G. Amino acid sequence of 1911341)12(b) v.12 (SEQ ID. NO. 36). The 191P4D12(b) v.12 protein has 510 amino acids.
1
61
121
181
241
301
MPLSLGAEMW
QVGQVAWARV
DEGEYECRVS
VTWDTEVKGT
HVS FLAEASV
GFPPLTTEHS
GPEAWLLLLL
DAGEGAQELA
TFPAGSFQAR
TSSRSFKHSR
RGLEDQNLWH
GIYVCHVSNE
LLAS FTGRCP
LLHS KYGLHV
LRLRVLVPPL
SAAVTSEFH-L
IGIZEGAMLKC
FSSRDSQVTV
AGELETSDVV
S PAYEGRVEQ
PSLNPGPALE
VP SRSMNGQ P
LSEGQPPPSY
DVLDPQEDSG
TVVLGQDAKL
PPPPRNPLDG
EGQGLTLAAS
LTCVVSHPGL
NWTRLDGPLP
KQVDLVSASV
PCFYRGDSGE
SVLLRNAVQA
CTAEGS PAPS
LQDQRITHIL
SGVRVDGDTL
VVVGVIAALL
30/77
361 FCLLVVVVVL MSRYHRRKAQ QMTQKYEEEL TLTRENSIRR LHSHHTDPRS QPEESVGLRA
421 EGHPDSLKDN SSCSVMSEEP EGCSYSTLTT VREIETQTEL LSPGSGRAEE EEDQDEGIKQ
481 AMVNHFVQENG TLRAIKPTGNG IYINGRGHLV
Figure 3H. Amino acid sequence of 191P412(b) v.13 clone 9C (SEQ ID. NO.: 37). The 191P4D12(b) 0.3 protein has 511
amino acids.
00
6
12
18
24
36
1 MPLSLGAEMW
1 QVGQVAWARV
:1 DEGEYECRVS
1 VTWDTEVKGT
:1 HVSFLAEASV
~1 GFPPLTTEHS
I LFCLLVVVVV
~1 AEGHPDSLKD
GPEAWLLLLL
DAGEGAQELA
TFPAGSFQAR
TSSRSFKHSR
RGLEDQNLWH
GIYVCHVSNE
LMSRYHRP.KA
NSSCSVMSEE
LLASFTGRCP
LLHSKYGLHV
LRLRVLVPPL
SAAVTSEFHL
IGREGAMLKC
FS SRDSQVTV
QQMTQKYEEE
PEGRSYSTLT
AGELETSDVV
S PAYEGRVEQ
PSLNPGPALE
VPSRSMNGQP
LSEGQPPPSY
DVLADPQEDS
LTLTRENSI R
TV\/LGQDAKL
PPEPPRNPLDG
EGQGLTLAAS
LTCVVSHPGL
NWTIRLDGPLP
GKQVDLVSAS
RLI{SHH-TDPR
PCFYRGDSGE
SVLLRNAVQA
CTAEGS PAPS
LQDQRITHIL
SGVRVDGDTL
VVVVGVIAAL
SQPEESVGLR
EEEDQDEGIKMVREIETQTE LLSPGSGRAE
481 QAMNHFVQEN GTLRAKPTGN~ GIYINGRGHL V
Figure 31. Amino acid sequence of 19112012(b) v.9 clone BCPI (SEQ ID. NO.: 38). The 191P4D12(b) v.9 protein has 137
amino acids.
1 MRRELLAGIL LRITFNFFLF FFLPFPLVVF FIYFYFYFFL EMESHYVAQA GLELLGSSNP
61 PASASLVAGT LSVHHCACFE SFTKRKKKLK KAFRFIQCLL LGLLKVRPLQ HQGVNSCDCE
121 RGYFQGIFMQ AAPWEGT
Figure UJ Amino acid sequence of 191P4D12(b) v.14 (SEQ ID. NO. 39). The 191P4D12(b) v.14 protein has 137 amino acids.
1 MRRELLAGIL LRITFNFFLF FFLPFPLVVF FIYFYFYFFL EMESHYVAQA GLELLGSSNP
61 PASDSLVAGT LSVKHCACFE SFTKRKKKLK KAFRFIQCLL LGLLKVRPLQ HQGVNSCDCE
121 RGYFQGIFMQ AAPWEGT
31/77
Figure 4: Alignment of 191M412(b) witfi known homologs.
A) Alignment of 191 P401 2(b) (SEQ ID NO: 40) with human Ig superfamily receptor LNIR (gi 14714574) (SEQ ID NO: 41)00 Score 927 bits (2397), Expect 0.0
Identities 510/51.0 (100%) Positives 510/510 (100%)
Query: 1 MPLSLGAEMWGPEAWLLLLLLiASFTGRCPAGELETSDVVTVVGQDAKjPCFYRGDSGE MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLjGQDAKLPCFYRGDSGE
SSbj ct: 1 MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKLPCFYRGDSGE
S Query: 61 QVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLjDGSVLLRNAVQA 120QVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA
S Sbj ct: 61 QVGQVAWARVDAGEGAQELAJLHSKYGLHV8PAYEGRVEQPPP PRNPLDGSVLLRNAVQA 120
Query: 121 DEGEYECRVSTFPAGSFQAFJJRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPS 180DEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPAJEEGQGLTLAASCTAEGSPAPS
Sbj ct: 121 DEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPAJEEGQGLTLAASCTAEGSPAPS 180
S Query: 181 VTWDTEVKGTTSSRSFKHSRSAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 240VTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL
S Sbjct: 181 VTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 240
OC) Query: 241 HVSFLAEASVRGLEDQNLWHIGRE3AMLKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTL 300HVS FLAEASVRGLEDQNLWHIGREGAMLKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTL
S Sbj ct: 241 HVS FLAEASVRGbEDQNLWHIGREGAMLjKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTL 300
Query: 301 GFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASVVVVGVIAALL 360GFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLJ)PQEDSGKQVDLVSASVVVVGVIAALL
Sbjct: 301 GFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASVVVVGVIAAJL 360
Query: 361 FCLLVVVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRRLHSHIITDPRsQPEESVGLRA 420FCLLVVVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRRLHSHHTDPRSQPEESVGLRA
sbj Ct: 361 FCLLW /VVLMSRYHRRKAQQMTQKYEEELTLTRENSIRRLHSHHTDPRSQPEESVGLRA 420
Query: 421 EGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGRAEEEEDQDEGIKQ 480EGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGRAEEEEDQDEGIKQ
Sbjct: 421 EGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGRAEEEEDQDEGIKQ 480
Query: 481 AMNHFVQENJGTLRAKPTGNGIYINGRGHIJV 510AMNHFVQENGTLRAKPTGNGIYINGRGHLV
Sbjct: 481 AMNHFVQEN'GTLRA1CPTGNGIYINGRGHLjV 510
B) Alignment of 191 P4D1 2(b) (SEQ ID NO: 42) with mouse nectin 4 (gi 18874521) (SEQ ID NO: 43).Score 893 bits (2308), Expect 0.0Identities 470/510 Positives =485/510 Gaps 2/510
Query: 1 MPLSLGAEMWGPEAWLLLLLLASFTGRCPAGEL'rSDVVTVVLGQDAKLIPCFYRGDSGE MPLSLGAEMWGPEAW L LL LASFTG+ AGELETSDVVTVVLGQDAKLPCFYRGD E
Sbj ct: 1 MPLSLGAEMWGPEAW-LRLLFLASFTGQYSAGELETSDVVTVVLGQDAKZPCFYRGDPDE 59
Query: 61 QVGQVAWARVDAGEGAQELALLHiSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLNAVQA 120QVGQVAWARVD EG +ELALLHSKYGIJHV+PAYE RVEQPPPPR+PLDGSVLLRNAVQA
Sbj Ct: 60 QVGQVAWARVDPNEGIRELALLHSKYGLHVN1PAYEDRVEQPPPPRDPLDGSVLL.NAVQA 119
Query: 121 DEGEYECRVSTFPAGSFQARIIRIRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPS 180DEGEYECRVSTFPAGSFQAR+RLRVLVPPLPSLNPGP LEEGQGLTLA1ASCTAEGSPAPS
Sbj Ct: 120 DEGEYECRVSTFPAGSFQARMRIRVLVPPLPSIMPGPPLEEGQGLTLA CTAEGSPAPS 179
Query: 181 VTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 240VTWDTEVKGT SSRSF H RSAAV'2SEFHLVPSRSMNGQPLTCVVSHPGLLQD+RITH L
Sbj ct: 180 VTWDTEVKGTQSSRSFTHPRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLJQDRRITHTL 239
Query: 241 HVSFLAEASVRGLEDQNLWHIGREGAMLKCLSEGQPPPSYNWTRLDGPLPSGVRVDGDTL 300V+FLAEASVRGLEDQNLW +GREGA LKCLSEGQPPP YNWTRLDGPLPSGVRV GDTL
Sbj ct: 240 QVAFLAEASVRGLEDQNLWQVGREGATLKCLSEGQPPPKYNWTRLDGPLPSGVRVKGDTh 299
Query: 301 GFPPLTTEHSGIYVCHVSNEFSSRDSQVTVDVLDPQEDSGKQVDLVSASVVVGVIAALL 360GFPPLTTEHSG+.YVCHVSNE SSRDSQVTV+VLDP ED GKQVDLVSASV++VGVIAAILL
Sbjct: 300 GFPPIJTTEHSGVYVCHVSNELSSRDSQVTVEVLDP-ED)PGKVDLVSASVIIVG;VIAALL 358
32/77
Query: 361 FCLLWVVVVLMSRYHRRKAQQMTQKYEEELTLTRENSIRRLHSHHTDPRSQPEESVGLRA 420FCLLVVVVVLMSRYHRRKAOQMTQKYEEELTLTRENS IRRL1HSHI{+DPRSQPEESVGLRA
Sbjct: 359 FCLLVVVVVLMSRYHRRKAQOMTQKYEEELTLTRENSIRRLHSH{SDPRSQPEESVGLRA 418
Query:
sbj ct:
421 EGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGRAEEEEDQDEGIKQ 480EGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGR EE++DQDEGIKQ
419 EGMPDSLKDNSSCSVMSEEPEGRSYSTLTTVREIETQTELLSPGSGRTEEDDDQDEGIKQ 478
Query: 481
Sbjct: 479
AMNHFVQENGTLRAKPTGNGIYINGRG3HLV 510AMNHI*VQENGTLRAKPTGNGIYINGRGHLVAMNHFVQENGTLRAKPTGNGIYINGRGHLV 508
33/77
00 ~Figure 5a: 191 P4D1 2B variant 1 Hydrophilicity profile(Hopp Woods 1981. Proc.
Nati. Acad. Sci. U.S.A. 78:3824-3828)
0.9 ________ProtScale output for user sequence
c-I phob. M pp 8~Wood
0.7
0.6
0.5
0.4
0.3
8.20 100 200 300 400 500
Position
34/77
00 Figure 5b: 191 P4DI2B variant 7 Hydrophilicity profile(Hopp Woods 1981. Proc.Nati. Acad. Sci. U.S.A. 78:3824-3828)
ProtScale output for user sequence0.9
Hphok. 'Hopp Wood-
c01 .8 00
0.7
0.6
0
0.
0.4
0.3
0.2
188 159 200 250 380 359 0 4 Position
35/77
Figure 5c: 191 P4D1 2B variant 9 Hydrophilicity profile(Hopp Woods 1981. Proc.Nati. Acad. Sci. U.S.A. 78:3824-3828)
00
ProtSoale output for user sequence
Hphob Hopp cods-
Posit ion
36/77
00Figure 6a: 191 P4DI 2B variant 1 Hydropathicity Profile
(Kyte Doolittle 1982. J. Mol. Biol. 157:105-132)
ProtScale output for user sequence
Hphob. /Kyte Doolittle
Position
37/77
00
Figure 6b: 191 P4DI 2B variant 7 Hydropathicity Profile(Kyte Doolittle 1982. J. Mol. Biol. 157:105-1 32)
ProtSoale output f or user sequence
Nphob. /Kyte Uoolittle-
100 150 200 250Position
300 350 400 450
38/77
Figure 6c: 191 P4DI 2B variant 9 Hydropathicity Profile(Kyte Doolittle 1982. J. Mol. Biol. 157:105-132)
ProtSoale output for user sequenoe
Hphob. e Doolittle-
0.700
0.6
0.4
0.3
8.2-
0.1 40 68 80 100 120
Position
39/77
Figure 7a: 191 P4D1 2B variant 1 Accessible Residues Profile(Janin 1979. Nature 277:491-492)
00
0.
0.7
0.65
0.6
0.55
0.45
0.4
0.35
0.3
ProtScale output for user sequence
accessikle r sidues
Position
40/77
00
Figure 7b: 191 P4DI 2B variant 7 Accessible Residues Profile(Janin 1979. Nature 277:491-492)
0.75
0.7
0.65
0.55
ProtSoale 6utput for user sequence
accessible residues-
Ir
0.35
8.3100 158 288 258
Position300 358 400 450
41/77
00
Figure 7c: 191 P41DI12B variant 9 Accessible Residues Profile(Janin 1979. Nature 277:49.1-492)
ProtSoale output for user sequence
accessible residues-
Position
42/77
00 Figure 8a: 191 P4D1 2B variant 1Average Flexibility Profile
(Bhaskaran Ponnuswamy 1988.Int. J. Pept. Protein Res. 32:242-255)
Pr'otScale output for user sequenoe
Average flexibility
0.7
0.6
0.3
0.20 108 200 300. 406 Soo
Position
43/77
00 Figure 8b: 191 P4DI12B variant 7Average Flexibility Profile
(Bhaskaran Ponnuswamy 1988.Int. J. Pept. Protein Res.- 32:242-255)
ProtSoale output f or user sequenoe
0 15eIS 200 250 300 350 400 450Position
44/77
00 Figure 8c: 191 P4DI 2B variant 9Average Flexibility Profile
(Bhaskaran Ponnuswamy 1988.Int. J. Pept. Protein Res. 32:242-255)
ProtScale output for user sequence
Ave age fle
00
0.6
0
0.4
0.3A
0.2
40 60 80 tooPosition
45/77
Figure 9a: 191 P4D1 2B variant 1Beta-turn Profile
(Deleage, Roux B. 1987. Protein Engineering 1:289-294)
ProtSoale output for user sequence
beia-turn .'De eage Roux
Posit ion
46/77
00
Figure 9b: 191 P4DI 2B variant 7Beta-turn Profile
(Deleage, Roux B. 1987. Protein Engineering 1:289-294)
ProtSoale output for user sequence
so 100 150 200 250 300, 350 400 450Position
47/77
Figure 9c: 191 P4DI 2B variant 9Beta-turn Profile
(Deleage, Roux B. 1987. Protein Engineering 1:289-294)
0.7
0.65
0.6
0.55
0.45
0.4
0.35
0.3
8.25
ProtScale ou-tput for user sequence
beta-turn Deleage &Roux
Position
48/77
00
Figure
367 420 699A T C
1590C
2184 2341G G
2688C191 P4 1 2B v. 1
3464 bp1 3464
420C191 P4D1 2B v.2 1
3464 bpI
191P4D12B v031
3464 bp
3464
2184
T 3464
2341
191P4D12B v.43464 bp
1 3464
2688A 3464
191P4D12B v3464 bp
a
367
191P4Dl2B vM13464 bp
1 3464
49/77
Figure 10 (con'd)
699A 3464191 P4D1 2B v. 111
3464 bp
1590
191P4D12B v.12 1 3464
3464 bp
1263-1265
3467 bpI
191 P4DI2B v.14
3467
1669898A
(1791) (3459:
Figure 10. Schematic alignment of SNP variants of 191 P4DI2B.
50/77
00
Figure 11
5I91P4D12B v.1 1 E F
510 aa
146L
443R 510
191 P4D1 2B v.2510 aa
191 P4DI 2B v.6295 aa
531 L 510
295
(216) (510)
191 P4D 12B v.7485 aa
191 P401 2B v.1 0510 aa
19 1P4D12B v.1 1510 aa
1 411 412 485
1)(411) (437) (510)
IG 5
146511
51/77
00 Figure 11 (con'd)
443
191 P4D12B v.12510 aa
1 510
334
191 P4D12B v.13511 aa
641 A 137191P4D12B v.9
137 aa
191P4D12B.v.14137 aa DZZZ
Figure 11. Schematic alignment of protein variants of 191 P4DI 2B.
52/77
2008202217 20 May 2008
Figure 12
191P4D12B v.13459 bp
191P4D12B v.63339 bp
191P4D12B v.73384 bp
1 342 702
1 197 2 2
(17) (318)
1 342 702
m
993
873
1114 1263 1420 1496 1571
94 13 13 00 13 76 51-Im I
3459
3339
1114 1263 1420 146 3384
Em
(1496) (1572)
1263 1420 1496 1571191P4D12B v.83396 bp
342 702 993 1114
m J m
2950 3396
(290) (3014)
1669
191P4D12B v.91669 bp (141)
191P4D12BPotential exons 3 B-D E E3 B A,
2008202217 20 May 2008Fig: 13A Secondary structure. prediction of 191 P4DI 2B variant 1
20 30 40 50 60
MPLSLGAEMWGPEAWLLLLLLLASFTGRCPAGELETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARV
ccccccccccchhhhhhhhhhhhhhcccccccceccceeeeeeecccccceeeecccccchhhhhhhhhc
DAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGS FQAR
ccccchhhhhhhhhhcccceccccccccccccccccccccceehhhhhccccccceeeeecccccchhhh
LRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTS SRS FKHSRSAAVTSEFHL
heeeeecccccccccccccccccceeeeeecccccccccccccccccccccccccccccccceeecceee
VPSRSMI'GQPLTCVVSHPGLLQDQRITHILHVS FLAEASVRGLEDQNLWHIGREGAMLKCLSEGQPPPSY
cccccccccceeeeeeccccccchhhhhhehhhhhhhhhhcccccccheehhccchehehhccccccccc
NWTRLDGPLPSGVRVDGDTLGFPPLTTEHSGIYVCHVSNEFSSRlSQVTVDVLDPQEDSGKQVDLVSASV
cccccccccccccccccccccccccccccceeeeeeeccccccccceeeeeecccccccccceeeeeeeh
VVVGVIAALLFCTJLVVVVVLMSRYHRRKAQQMTQKYEEELTLTREN IRRLHSHH=DPRSQPEESVGLRA
hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhcccccccccccc ccecc
EGHPDSLKDNSSCSVMSEEPEGRSYSTLITVRB IETQTELLSPGSGRAEEEEDQDEGIKQAMNHFVQENG
ccccccccccccceeeccccccccceeeeeeeeeeccceeccccccccccccchhhhhhhhhhheeeccc
TLRAKPTGNGIYINGRGHLV
ceeeccccceeeeecccccc
Alpha helix 24.90%Extended strand 18.63%Random coil 56.47%
2008202217 20 May 2008
138 Secondary structure prediction of 191 P4DI 2B variant 6
20 30 40 50 60
1 *I I I I I I
cccccccccccccccCCCCCC CCeeeeeeeccccccccceeeeeecccccccccceeeehhh
IAALLFCLLVVVVVLMSRYRRKAQQMTQKEELTLES IRRLHSHHTDPRSQPEESVGLRAEGHPD
hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhcccccccccccccceccccccc
SLKDNSSCSVNSEEPEGRSYSTLTTVREIETQTELLS PGSGRAEEEEDQDEGIKAHVQGTLRAK
ccccccceeeccccccccceeeeeeeeeeccceeccccccccccccchhhh~eeccec
PTGNGIYINGRGHLV
cccceeeeecccccc
Alpha helix 28.47%Extended Strand 19.32%Random coil :52.20%
2008202217 20 May 2008
13C Secondary structure prediction of 191 P4DI-2B variant 720 30 40 so 60
1 1 1 1 1 1 IMPLSLGAEMWGPEAWLLLLLLLAS FTGRCPAGELETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARV
ccccccccccchhhhhhhhhhhhhhcccccccceccceeeeeeecccccceeeecccccchhhhhhhhhc
DAGEGAQELAILLHSKYGLEVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQAflEGEYECRVSTFPAGSFQAR
ccccchhhhhhhhhhcccceccccccccccccccccccccceehhhhhccc~ccceeeeecccccchblhh
LRLRVLVPPLPSLNPGPAJEEGQGLThAASCTAEGS PAPSVTWDTEVKGTTS SRS FKHSRSAAVTSEFHL
heeeeecccccccccccccccccceeeeeeccccccccccccccccccccccccccccccceeecceee
VPSRSMNGQPLTCVVSHPGLLQDQRITHILIVSFLAEASVRGLEDQNLWHIGREGAMLKCLSEGQPPPSY
cccccccccceeeeeeccccccchhhhhhehhhhhhhhhhcccccccheehhccchehehhccccccccc
Zi NWTRILDGPLPSGVRVDGDTIGFPPLTTEHSGIYVCHVSNBFS SRDSQVTVDVLDPQEDSGKQVDLVSASV
cccccccccccccccccccccccccccccceeeeeeeccccccccceeeeeecccccccccceeeeeeeh
VVVGVIAA.LLFCLLVVVVVIJMSRYKPRKAQQMTQKYEEELTLTRENS IRRLHSHHTDPRSQSEEPEGRSY
hhhhhh -hhh~~hhhhhhhhhhhhhhhhhhhhhcccchhhhhhhccccccccccccccccc
STLTTREIETQTELLSPGSGRAEEEEDQDEGIKQAMN{FVQENGTLRAKPTGNGIYINGRGHLV
eeeeeeeeeeccceeccccccccccccchhhhhhhhhheeecccceeeccccceeeeecccccc
Alpha helix 26.19%Extended strand 18.76%Random coil :55.05%
2008202217 20 May 2008
13D Secondary structure prediction of 191 P4DI2B variant 9
20 30 40 50 60
1 1 1 1 1 1IMRELLAGILLRITFNFFLFFFLPFPLVVFFIYFYFYFFLEMESFIVAQAGLELLGSSNPPASASLVAGT
chhhhhhhhhhhhhll~hChblhchhhhhhhhhhhhhhhhlI11cchhhccccccccccheeccc
ceeccchehhhhhhhhhhhhhhhhhhhhhhhheeeccccccccccccccccchhheeeeccccccc
Alpha helix 56.20%Extended strand 8.76%Random coil 35.04%
2008202217 20 May 2008Transmembrane preuiction TorFi v Ir~u-i A varint i13E
rMpr- r dfkfl-f
1 transmembrane domairpredicted
020
3000
0000
1 000
1000
-2000
-3000
-5000
-0000.
TMHMM posterior probabilities for Sequenoe
13F
1 transmembrane domainpredicted
a102030 400 500
Predicted to reside inside
Transmembrane domain
2008202217 20 May 2008
Transmembrane prediction for 191 P4DI 2B variant 6VHW_.
13G
1 transmembrane dcpredicted
)mainC CCC
1 C C C
1 0CC
C CCC
-SC CC
C CCC
C CC ICC ICCe C CBC C
0 ftme me.
Transmembrane domain
TM HMM posterior probabilities for Sequence
13H
1 transmembrane domain predicted
100
Predicted to reside outside
150 200 250
STransmembrane domain
2008202217 20 May 2008Transmembrane preaiction Tor iui r'iuuis variant 131
1 transmembrane, d=mpredicted
in
Y~pr-ed r--pt~ -ke .dll...
-too:
30000
L OGo
Transmembrane domain
13J
1 transmembrane domepredicted
TMAHMM posterior probabilities for Sequence
100 150 200 250 300 350 400 450
Predicted to reside outside Predicted to reside insideTransmembrane domain
13K
2 transmembrane domairpredicted
13L
I transmembrane domairpredicted
2008202217 20 May 2008
rransmembrane prediction for 191 P4DI 2B- variant 9T"P_0 MUrtpWtV r- -k-w"f~f
3000
IM000
L 0 0 6
Transmembrane domains
TMHMM posterior probabilities for Sequence
4 0 60 80 100 120
Predicted to reside outside Peitdt eieisd
Transmembrane domain
2008202217 20 May 2008
Figure 14A 191 P4D12 Expression by RT-PCR
M1 234 56789
1. Vital Pool 1
2. Vital Pool 2 26X
3. Normal kidney4. Prostate Cancer Pool
Bladder cancer pool
6. Colon Cancer Pool7. Lung Cancer Pool I8. Breast Cancer Pool
9. Metastasis Cancer Pool
2008202217 20 May 2008
Figure 14B
1 2 3 4 5 6 7 8 9 10 11
191P4D12
B-Actin
Prostate cancer pool
Bladder cancer pool
Kidney cancer pool
Colon cancer pool
Lung cancer pool
Ovary cancer pool
26X
Ovary cancer pool
Breast cancer pool
Metastasis pool
Pancreas cancer pool
LAPC prostate cancer xenografts
2008202217 20 May 2008
Figure 15 191P4D12 Expression in Normal Tissues
kb 12 3 4 5 6 7 8 kb 12 3 4 5 6 7 8
4.4- 4.4-
2.4-2.4-
1.4- 1.4-
0.24-0.24-
1. Heart2. Brain3. Placenta4. Lung
Liver6. Skeletal Muscle7. Kidney8. Pancreas
1. Spleen2. Thymus3. Prostate4. Testis5. Uterus6. Small Intestine7. Colon8. Leukocytes
2008202217 20 May 2008
Figure 16 Expression of 191P4D12 in Bladder Cancer Patient
Specimens and in-Normal Tissues
kb BCP NP NB NK NC NL NBr NO NPa
BCP Bladder cancer pool: Pool of 3 differentbladder cancer specimens
4.4- NP normal prostateNB normal bladderNK normal kidney
1.4- pNC normal colonNL normal lungNBr normal breast
NO normal ovaryNPa normal pancreas
2008202217 20 May 2008
Fiqure 17 Expression of-191P4D12 in Bladder CancerPatient Specimens
kb CL CL CL CL N T1 T2 T3 T4
Ti Invasive transitional papillary, grade 2
4.4- T2 Transitional papillary, grade 2
T3 Transitional, grade 3
2. T4 Poorly diff. Transitional
1.4 T5 Mod. to poorly diff. Squamous cell
CL Cell lines (from left to right): HT1197, UM-U3, TCCSUP, J82
N Normal BladderT Tumor
2008202217 20 May 2008
Figure 18 191P4D12 Expression inProstate Cancer Xenografts
kb 1 2 3 4
1 Normal Prostate
2.4 2. LAPC-4AD3. LAPC-4AI
1.4 LAPC-9ADLAPC-9AI
0.24-
2008202217 20 May 2008
Figure 19 191P4D12 Expression in Cervical CancerPatient Specimens
kb
4.4-
2.4-
1.4-
1 2 3 4
Normal CervixHela Cell LineCervix Tumor #1Cervix Tumor #2Cervix Tumor #3
2008202217 20 May 2008
Figure 20 191P4D12 Expression in Lung Cancer PatientSpecimens
kb CL CL CL CL N Nat T1 T2 T3 T4 T5 T6 T7 T8 T9 CL Cell lines (in order from left to right):
A427, NCI H146, NCI H82, SKLU1N Normal lungNat Normal adjacent to tumorT Tumor
4.4-
T1 Adeno I B
2.4- T2 Adeno I B
T3 Adeno I B
1.4- T4 Squamous stage IB
Squamous stage IIB
T6 Squamouse stage IIIA
T7 Squamous stage IIIA
T8 Large cell stage IlIA
T9 Large cell stage IB
Figure 21A 191P4D12 Expression in Lung Cancer.
00 ExpressionPathology Grade Level
1 Bronchioalveolar IA2 Squamous3 Adeno Mod Diff4 Adeno Mod Diff
Non-small cell6 Adeno 37 Squamous8 Adeno IB9 Squamous
Small Cell IC 11 Small Cell I
12 Small Cell IS 13 Large Cell' IV
00 14 Squamous 1130 15 Squamous IB
16 Squamous IIIA17 Papillary IV18 Papillary IB19 Adeno IIIA
Adeno IIlA21 Squamous IIB22 Squamous IB23 Adeno IB24 Large Cell IIIA
Small Cell IIB26 Squamous IB27 Squamous IIIA28 Papillary29 Adeno I
Large Cell 11B31 Large Cell I.rc ht~g oiie~'
70/77
Figure 21B 191P4D12 Expression in Bladder Cancer
00
00
I
ExpressinGrade :LevelI,Pathology
Normal1-
234
6789
111213
TransitionalTransitionalTransitionalSquamousPapillaryTransitionalTransitionalTransitionalTransitionalPapillaryTransitional
14 Transitional 2PapIllary 3
16 Transitional17 Squamous
Not18 determined 319 1Transitional 3
71/77
Figure 21C 191P4D12 Expression in Prostate Cancer.
0 1 Expression-.
4 5 j4 t 4
7
00] 17 7
19 9 y1lt
.1 not determined21 LAPC-4AD W 4"'t22 LAPC-4A123 LAPC-9AD24 LAPC-9A1
PeircQ in osiv V A
72/77
Fi-gure 21D 191P4D12 Expression in Colon Cancer.
00:Sta e Expression
o Patlent# :Sag Level
16II
73/7 7
Figure 21E 191P4D12 Expression in Uterus Cancer.
00 i0oi Expression
0 -patient Grade LevelI AdenoCA G
2 AdenoCA G3 AdenoCA G4 AdenoCA G
AdenoCA G6 AdenoCA G27 AdenoCA G28 AdenoCA G29 AdenoCA G3A
AdenoCA Well diff.11 Carclnosarcoma G312 Stromal sarcoma HI h qrade
00 A i~e 7 00' 6
74/77
Figure 21F 191P4D12 Expression in Cervical Cancer.
00o Patent#reveio
ci2
03ci4
01ci1
00 10 140 fPyeae;Y~. 74
=i nm' a t 00
75/7 7
2008202217 20 May 2008
Fiqure 22 Transient Expression of 1.91 P4D12 in Transfected 293T Cells
1 2 3 4
1. 293T-191P4D12.pTag5 supemnatant2. 293T-191P4D12.pTag5 lysate
363. 293T-191 P4DI 2.pcDNA3.1/MycHis lysate4. 293T-pcDNA3.1I/MycHis negative control
2008202217 20 May 2008
Figure 23, Expression of 191 P4D1 2 in Transdluced Cells Following RetroviralGen e Transfer
4.4-
2.4-
1.4-
1. LAPC-4AD2. 3T33. 3T3.191P4DI2.pSRa
Al
00 SEQUENCE LISTING
<110> Agensys, Inc.Raitano, Arthur B.Challita-Eid, Pia M.Jakobovits, AyaFaris, MaryGe, Wangmao
<120> Nucleic Acids and Corresponding ProteinsEntitled 191P4D12(b) Useful in Treatment and Detection ofCancer
<130> 51158-20082.40
<140><141>
Not Yet Assigned
<150> US60/404,306<151> 2002-08-16
<150> US60/423,290
<151> 2002-11-01
<160> 130
<170> FastSEQ for Windows Version
<210> 1<211> 223<212> DNA<213> Homo sapiens
<400> 1gatcactaattttatttttaactcttcttattccccagcc
tcaaggctctgctggcccacgtctgaaatcagcctaggac
tctggatgtt tctctgggtt ggggctggag ttcaatgagg ccagatacac tcagccagaa tacctagatt tagtacccaa 120tgctggattt ctggcctaag ggagaggctc ccatccttcg 180ttcgaatgtg gagcctgaag atc 223
<210> 2<211> 3464<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1796)
<400> 2ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagt
gt tggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagctctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa cttcagaaacacc atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Sen Leu Gly Ala Glu Met Trp
ggg cct gag gcc tgg ctg ctg ctg ctg cta ctg ctg gca tca ttt acaGly Pro Glu Ala Trp Leu Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr
1/105
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal. Leu Gly
gcg ggt gag ctgAla Gly Giu Leu
gagGlu
acc tca gac gtg gta act gtgThr Ser Asp Val Val Thr Val.
cag gac gca aaa ctg ccc tgc ttcGin Asp Ala Lys Leu Pro Cys Phe
tac cgaTyr Arg
ggg gac tccGly Asp Ser
ggc gag caa gtg ggg caaGly Glu Gin Val Gly Gin
gca tgg gct cggAla Trp Ala Arg
gac gcg ggc gaaAsp Ala Gly 0Th
00
ggcGly
gcc cag gaa ctaAla Gin Giu Leu
cta ctg cac tccLeu Leu His Ser
tac ggg ctt catTyr Gly Leu His
389
437
485
533
581.
629
677
agc ccg gct tacSer Pro Ala Tyr
ggc cgc gtg gagGly Arg Val Giu
cagGin1.00
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggc gag tacGly Giu Tyr
125
tca gtg ctc ctgSer Val Leu Leu
cgcArg1.15
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Glu120
agc ttc cagSer Phe Gin
gag tgc cgg gtcGiu Cys Arg Val.
agcSer130
acc ttc ccc gccThr Phe Pro Ala
gcg cggAla Arg
140
ctg cgg ctc cgaLeu Arg Leu Arg
gtgVal145
ctg gtg cct cccLeu Val Pro Pro
ccc tca ctg aatPro Ser Leu Asn
ggt cca gca ctaGly Pro Ala Leu
gaaGlu160
gag ggc cag ggcGiu Gly Gin Gly
acc ctg gca gccThr Leu Ala Ala
tccSer170
725
773
821tgc aca gctCys Thr Ala
gtc aaa ggcVal Lys Gly
gcc gtc accAla Val Thr
205
gag ggcGlu Gly
175
aca acgThr Thr190
agc cca gcc cccSer Pro Ala Pro
gtg acc tgg gacVal Thr Trp, Asp
acg gagThr Glu185
tcc agc cgtSer Ser Arg
tccSer195
ttc aag cac tccPhe Lys His Ser
cgc tct. gctArg Ser Ala200
atg aat gggMet Asn Gly
tca gag ttc cacSer Glu Phe His
gtg cct agc cgcVal Pro Ser Arg
agcSer215
cag cca ctg act tyt gtgGin Pro Leu Thr Cys Val
220
tcc cat cct. ggc ctg ctc cag gac caaSer His Pro Gly Leu Leu Gin Asp Gin
230
aggArg235
atc acc cac atcIle Thr His Ilie
cac gtg tcc ttcHis Val Ser Phe
cttLeu245
gct gag gcc tctAla Giu Aia Ser
1013
1061agg ggc ctt gaa gacArg Gly Leu Glu Asp
caa aat ctgGin Asfl Leu
tgg cac att ggc aga gaa gga gctTrp His Ile Gly Arg Giu Gly Ala
2/105
255 26025 26S
atg ctc aagMet Leu Lys
aca cgg ctgThr Ary Leu
285
ctg agt gaa gggLeu Ser Glu Gly
ccc cct ccc tcaPro Pro Pro Ser
tac aac tggTyr Asn Trp,280
gat ggg gacAsp Gly Asp
1109
1157gat ggg cct ctgAsp Gly Pro Leu
cccPro290
agt ggg gta cgaSer Gly Val Arg
gtgVal295
act ttgThr Leu
300
ggc ttt ccc ccaGly Phe Pro Pro
acc act gag cacThr Thr Giu His
agcSer310
ggc atc tac gtcGly Ile Tyr Val
1205
1253tgcCys315
cat gtc agc aatHis Val Ser Asn
gagGiu320
ttc tcc tca aggPhe Ser Ser Arg
tct cag gtc actSer Gin Val Thr
gtgVal330
gat gtt ctt gac ccc cay gaa gac tct ggg aag cag gtg gacAsp Val Leu Asp Pro Gin Glu Asp Ser Gly Lys Gin Val Asp
cta gtgLeu Val345
1301
tca gcc tcgSer Ala Ser
ctt ctg gtgLeu Leu Val
365
gtg gtg gtg ggtVal Val Val Gly
gtgVal355
atc gcc gca ctcIle Ala Ala Leu
ttg ttc tgcLeu Phe Cys360
cgg cgc aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
atg tcc cga tacMet Ser Arg Tyr
gcc cagAla Gin
380
cay atg acc cayGin Met Thr Gin
aaaLys385
tat gag gag gagTyr Giu Giu Glu
acc ctg acc aggThr Leu Thr Arg
gagGlu39S
aac tcc atc cggAsn Ser Ile Arg
ctg cat tcc catLeu His Ser His
cacHis405
acg gac ccc aggThr Asp Pro Arg
1445
1493
1541cay ccg gag gagGin Pro Giu Glu
ag tSer415
gta gyg ctg agaVal Gly Leu Arg
gccAla420
gag ggc cac cctGlu Gly His Pro
gat agtAsp Ser425
ctc aag gacLeu Lys Asp
cyc agt tacArg Ser Tyr
445
aacAsn430
agt agc tgc tctSer Ser Cys Ser
atg agt gaa gagMet Ser Giu Giu
ccc gag ggcPro Glu Gly440
1589
too acg ctg accSer Thr Leu Thr
acgThr450
gtg agg gag ata gaa aca cag actVal Ary Giu Ile Giu Thr Gin Thr
455
1637
gaa ctgGiu Leu
460
ctg tct cca gycLeu Ser Pro Gly
tctSer465
ggg cgg gcc gagGly Arg Ala Giu
gagGiu470
gag gaa gat cagGiu Giu Asp Gin
1685
1733gatAsp475
gaa ggc atc aaaGiu Gly Ile Lys
cayGin480
gcc atg aac catAla Met Asn His
tttPhe485
gtt cag gag aatVal Gin Giu Asn
gggGly490
acc cta cgg gcc aag ccc acg ggc aat ggc atc tac atc aat ggg cggThr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile Tyr Ile Asn Giy Arg
1781
3/105
495 50050 505
gga cac ctg gtc tga cccaggcctg cctcccttcc ctaggcctgg ctccttctgt 1836Gly His Leu Val
tgacatgggaagatgctcccgggctccaccgcctgtgtgaac tgtgt ccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcc tt ta cgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggc c tccc tagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggact cag cc agttctggcctatggagcctgaacataaaatg
gcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaat t taagtgt agaaagcctttacaccaggggggcagcccctcgtggttactcttggacctgattatagacctcgcctttccttggggctggaatacctagaagggagaggcagatctaagaatattctgtt
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggc ttgaaacatattttcacttttaattttttatttttctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
t tc ttgcggattcatcgggagtgcatgtgttggaggggtgtggtgtatgttgtgtcatgtagcagtattatgtgcgggcacttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttgaaatgt ttac tgtgattgtgacctgagagctaaattgcatcctcctgttcagagttgaggttggatcactaggtttattttaaactcttctcg tt ccc cagtacattttatcagacaaaac
1896195620162076213621962256231623762436249625562616267627362796285629162976303630963156321632763336339634563464
<210> 3<211> 510<212> PRT<213> Homo sapiens
<400> 3Met Pro Leu Ser Leu
1 5Leu Leu Leu Leu Leu
Gly Ala Glu Met Trp10Thr
Gly Pro Glu Ala Trp, Leu
Leu Ala Ser
Thr
Phe25Thr
Gly Arg Cys
Glu Leu Glu
Lys Leu Pro
Ser Asp Val Val40Gly
Val Val Leu Gly
Gin
Pro Ala Gly
Gin Asp Ala
Val Gly GinCys Phe Tyr
Val Ala
Arg
Asp
Asp Ser Gly
Trp Ala Arg
Leu
Val
Tyr
Ala Gly Glu Gin Glu Leu
Leu His Ser Lys
Pro
Gly Leu His Pro Ala Tyr Glu Gly
Arg Val Glu
Leu Leu Arg115
Val Ser Thr
Gin100Asn
Pro Pro Pro Pro Leu Asp
Ala Val Gin Ala120Ser
Glu Gly Glu Tyr125Leu
Gly Ser Val110Glu Cys Arg
Arg Leu ArgPhe Pro Ala130
Val Leu Val Pro Pro Leu
Gly135Pro
Phe Gln Ala Arg140GlySer Leu Asn Pro Pro Ala Leu Glu
4/105
145 150 155 160Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
00165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Val Ary Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270C] Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly ProC1275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro00290 295 30000 Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu
305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 30335Giu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Giu Giu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Giu Ser Val
405 410 415Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430Cys Ser Val Met Ser Giu Giu Pro Giu Giy Arg Ser Tyr Ser Thr Leu
435 440 445Thr Thr Val Arg Giu Ile Giu Thr Gin Thr Giu Leu Leu Ser Pro Gly
450 455 460Ser Gly Arg Ala Glu Giu Glu Giu Asp Gin Asp Glu Gly Ile Lys Gin465 470 475 480Ala Met Asn His Phe Vai Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 4<211> 3464<212> DNA<213> Homo sapiens
<220><221> CDS
*<222> (264) (1796)
<400> 4ggccgtcgtt gttggccaca gcgtgggaag cagctctggg ggagctcgga gctcccgatc acggcttctt gggggtagct acggctgggt gtgtagaacg gggccggggc tggggctggg 120tcccctagtg gagacccaag tgcgagaggc aagaactctg cagcttcctg ccttctgggt 180
5/105
cagttectta ttcaagtctg cagccggctc ecagggagat ctcggtggaa cttcagaaac 240
gctgggcagt ctgcctttea ace atg ccc ctg tcc ctg gga gCC gag atg tgg 293Met Pro Leu Ser Leu Gly Ala Glu Met Trp00
00
ggg cct gag gee tgg ctg etg ctg ctgGly Pro Glu Ala Trp Leu Leu Leu Leu
ctg ctg gca teaLeu Leu Ala Ser
ttt acaPhe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
ecPro
geg ggt gag etgAla Gly Glu Leu
ace tea gacThr Ser Asp
cag gac gca aaaGin Asp Ala Lys
ccc tgc ctc tacPro Cys Leu Tyr
gtg gta act gtgVal Val Thr Val
ega ggg gac tcArg Gly Asp Ser
gac gcg ggc gaaAsp Ala Gly Glu
3421
389
437
485
533
581
ggc gagGly Glu
caa gtg ggg eaaGin Val Gly Gin
gea tgg get eggAla Trp Ala Arg
ggcGly
gee eag gaa etaAla Gin Glu Leu
eta ctg eac teeLeu Leu His Ser
tae ggg ctt catTyr Gly Leu His
age ceg get tacSer Pro Ala Ty
gagGlu
gge ege gtg gagGly Arg Val Glu
ceg ceg ccc ecaPro Pro Pro Pro
cgc aaeArg Asn105
eec ctg gaePro Leu Asp
g9c gag tacGly Glu Tyr
125
ggeGly110
tea gtg etc ctgSer Val Leu Leu
aac gea gtg eagAsn Ala Val Gin
geg gat gagAla Asp Glu120
age ttc cagSer Phe Gin
gag tgc egg gteGlu Cys Arg Val
ace ttc eec geeThr Phe Pro Ala
geg eggAl a Arg
140
etg egg etc egaLeu Arg Leu Arg
etg gtg cet. eec etg ccc tea etg aatLeu Val Pro Pro Leu Pro Ser Leu Asn
150
ectPro155
ggt eea gca etaGly Pro Ala Leu
gag gge cag ggeGlu Gly Gin Gly
ctgLeu165
ace etg gca geeThr Leu Ala Ala
teeSer170
tge aca get. gagCys Thr Ala Glu
ggeGly175
age eca gee cccSer Pro Ala Pro
ageSer180
gtg ace tgg gacVal Thr Trp Asp
aeg gagThr Giu185
gte aaa ggeVal Lys Gly
gee gte aceAla Val Thr
205
eag eca ctgGin Pro Leu
220
acaThr190
aeg tee age cgtThr Ser Ser Arg
tte aag eaePhe Lys His
tee ege tet getSer Arg Ser Ala
200
tea gag ttc cacSer Glu Phe His
t tgLeu210
gtg cet age egeVal Pro Ser Arg
ageSer215
atg aat gggmet Asn Gly
869
917
965act tgt gtgThr Cys Val
gtgVal225
tee cat cet ggcSer His Pro Gly
etc cag gac caaLeu Gin Asp Gln
6/105
aggArg235
atc acc cac: atcIle Thr His Ile
cac gtg tcc ttcHis Val Ser Phe
cttLeu245
gct gag gcc tctAla Giu Ala Ser
gtgVal250
1013
1061agg ggc ctt gaaArg Gly Leu Giu
gacAsp255
caa aat ctg tggGin Asn Leu Trp
att ggc aga gaaIle Gly Arg Giu
gga gctGly Aia265
atg ctc aagMet Leu Lys
aca cgg ctgThr Arg Leu
285
ctg agt gaa gggLeu Ser Giu Giy
cagGin275
CCC cct ccc tcaPro Pro Pro Ser
tac aac: tggTyr Asn Trp280
gat ggg gacAsp Gly Asp
00
gat ggg cct ctgAsp Giy Pro Leu
cccPro290
agt ggg gta cgaSer Gly Val Arg
act ttgThr Leu
300
ggc ttt ccc ccaGiy Phe Pro Pro
acc: act gag cacThr Thr Giu His
ggc atc tac gtcGly Ile Tyr Val
1109
1157
1205
1253
1301
cat gtc agc aatHis Val Ser Asn
ttc tcc tca aggPhe Ser Ser Arg
gatAsp325
tct cag gtc actSer.Gin Val Thr
gat gtt ctt gacAsp Val Leu Asp
cag gaa gac tctGin Giu Asp Ser
gggGly340
aag cag gtg gacLys Gin Val Asp
cta gtgLeu Val345
tca gcc tcgSer Ala Ser
ctt ctg gtgLeu Leu Val
365
gtgVal1350
gtg gtg gtg ggtVal Val Val Gly
gtgVal355
atc gcc gca ctcIle Ala Ala Leu
ttg ttc: tgcLeu Phe Cys360
cgg cgc aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
ctcLeu370
atg tcc oga tacMet Ser Arg Tyr
gcc cagAla Gin
380
cag atg acc: cagGin Met Thr Gin
tat gag gag gagTyr Glu Glu Giu
acc ctg acc aggThr Leu Thr Arg
1445
gagGiu395
aac tcc atc cgg agg ctg cat tcc cat cac acg gac ccc aggAsn Ser Ile Arg Arg Leu His Ser His His Thr Asp Pro Arg
1493
cag ccg gag gagGin Pro Giu Giu
agtSer415
gta ggg ctg agaVal Gly Leu Axg
gccAl a420
gag ggc cac cctGlu Gly His Pro
gat agtAsp Ser425
1541
1589ctc aag gacLeu Lys Asp
cgc agt tacArg Ser Tyr
445
agt agc tgc tctSer Ser Cys Ser
gtgVal1435
atg agt gaa gag ccc gag ggcMet Ser Glu Giu Pro Glu Gly
440
tcc acg ctg accSer Thr Leu Thr
gtg agg gag ataVal Arg Giu Ile
gaaGlu455
aca cag actThr Gin Thr
1637
gaa ctgGiu Leu
460
ctg tct cca ggcLeu Ser Pro Gly
ggg cgg gcc gag gag gag gaa gat cagGly Arg Ala Giu Glu Glu Giu Asp Gin
470
1685
7/105
00gatAsp475
gaa ggc atc aaa cag gcc atg aac cat ttt gtt cag gag aat gggGiu Gly Ile Lys Gin Ala Met Asn His Phe Val Gin Giu Asn Gly
480 485 490
1733
acc cta cgg 9CC aag ccc acg ggc aat ggc atc tac atc aat ggg cgg 1781
Thr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg495 500 505
gga cac ctg gtc tga. cccaggcctg cctcccttcc ctaggcctgg ctccttctgt 1836
Gly His Leu Val*510
tgacatggga gattttagct catcttgggg gcctccttaa acacccccat.agatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgt.atgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgt,ttgaaaaa.
catcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgCCggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccat.tctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagaga.aggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
actgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
ctttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgt.gctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccct.cgtggt tact.cttggacctgattatagactcgcctttccttggggctggaatacctagaagggagaggcagatctaagaatattctgtt
aacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcacttttaattttttatttttctcctgggct.caccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggttt.agttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcttgcgga 1896ttcatcggga 1956gtgcatgtgt 2016tggaggggtg 2076tggtgtatgt 2136tgtgtcatgt 2196agcagtatta 2256tgtgcgggca 2316cttcggagcc 2376ctgttacaga 2436tgtaaatata 2496tttttctttt. 2556attttttttt, 2616caagcaatcc 2676cctgctttga 2736aatgtttact 2796gtgattgtga 2856cctgagagct 2916aaattgcatc 2976ctcctgttca 3036gagttgaggt 3096tggatcacta 3156ggtttatttt 3216aaactcttct 3276cgttccccag 3336tacattttat. 3396cagacaaaac 3456
3464
<210> <211> 510<212> PRT<213> Homo sapiens
<400> Met Pro Leu Ser Leu Giy Ala Glu Met Trp Gly
1 5 10Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly
25
Giu Leu Glu Thr Ser Asp Val Val Thr Val Val40
Lys Leu Pro Cys Leu Tyr Arg Gly Asp Ser Gly
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly70
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser
Pro Glu Ala Trp Leu
Arg Cys Pro Ala Gly
Leu Gly Gin Asp Ala
Glu Gin Val Gly Gin
Gin Glu Leu
Pro Ala Tyr
8/105
Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val100 105 110
00
00
Leu
Val
Val145Glu
Pro
Ser
His
Val225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Lys385Leu
Gly
Cys
Thr
Ser465Ala
Thr
Leu Arg115
Ser Thr130Leu Val
Gly Gin
Ala Pro
Arg Ser195
Leu Val210Ser His
Val Ser
Leu Trp
Gly Gin275
Pro Ser290Thr Thr
Ser Ser
Asp Ser
Gly Val355
Leu Met370Tyr Giu
His Ser
Leu Arg
Ser Val435
Thr Val450Gly Arg
Met Asn
Gly Asn
Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Arg
Gly340Ile
Ser
Giu
His
Ala420Met
Arg
Al a
His
Gly500
Ala
Pro
Pro
Leu165Val1
Lys
Ser
Gly
Leu245Ile
Pro
Val
His
Asp325Lys
Ala
Arg
Glu
His405Giu
Ser
Giu
Glu
Phe485Ile
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gin
Al a
Tyr
Leu390Thr
Giy
Glu
Ile
Glu470Val
Tyr
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Giu
Arg
Ser
Val295Giy
Gin
Val1
Leu
His375Thr
Asp
His
Glu
Glu455Giu
Gin
Ile
Al a120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Giu
Tyr280Asp
Ile
Val
Asp
Leu360Arg
Leu
Pro
Pro
Pro440Thr
Giu
Glu
Asn
Asp
Phe
Leu
Al a
Tht185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
Thr
Arg
Asp425Glu
Gin
Asp
Asn
Gly505
Glu
Gin
Asn
Ser170Giu
Ala
Gly
Gin
Val250Al a
Trp
Asp
Val
Val330Val
Cys
Lys
Arg
Ser410Ser
Gly
Thr
Gin
Gly490Arg
Gly
Ala
Pro.155Cys
Val
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Ser
Leu
Ala
Glu395Gin
Leu
Arg
Giu
Asp475Thr
Gly
Giu
Arg140Gly
Thr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Leu
Gin380Asn
Pro
Lys
Ser
Leu460Glu
Leu
His
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Ser
Val365Gin
Ser
Glu
Asp
Tyr445Leu
Gly
Arg
Leu
Giu
Arg
Al a
Glu
Thr190Ser
Thr
His
Giu
Cys270Asp
Phe
Ser
Asp
Val1350Val1
Met
Ile
Glu
Asn430Ser
Ser
Ile
Ala
Val510
Cys
Leu
Leu
Gly175Thr
Giu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
Ser415Ser
Thr
Pro
Lys
Lys495
<210> 6<211> 3464<212> DNA<213> Homo sapiens
<220>
9/105
<221> CDS<222> (264) (1796)
00c400> 6ggccgtcgttacggcttctttc ccc tagtgcagttccttagctgggcagt
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtacggtgcgc ag cacc
.gggaag cagctctggg ggagctcggajctgggt gtgtagaacg gggccggggcragaggc aagaactctg cagcttcctg:cggctc ccagggagat ctcggtggaaatg ccc ctg tcc ctg gga 9CCmet Pro Leu Ser Leu Gly Ala
1
gctcccgatctggggctgggccttctgggtcttcagaaacgag atg tgG1u Met Trp
ggg cct gag gccGly Pro Giu Ala
tggTrp
ctg ctg ctg ctg cta ctg ctg gca tca ttt acaLeu Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
cccPro
gcg ggt gag ctg gag acc tca gac gtg gta act gtg
Ala Gly Glu Leu Glu Thr Ser Asp Val Val Thr Val
341
389
437cag gac gca aaaGin Asp Ala Lys
ccc tgc ttc tacPro Cys Phe Tyr
ggg gac tccGly Asp Ser
ggc gagGly Glu
caa gtg ggg caaGin Val Gly Gin
gca tyg gct cggAla Trp Ala Arg
gac gqg ggc gaaAsp Ala Gly Glu
ggcGly
gcc cag gaa cta gcg cta ctg cac tccAla Gin Glu Leu Ala Leu Leu His Ser
tac gyg ctt catTyr Gly Leu His
agc ccg gct tacSer Pro Ala Tyr
gyc cgc gtg gagGly Arg Val Glu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggc gag tacGly Glu Tyr
125
tca gtg ctc ctgSer Val Leu Leu
cgcArg115
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Glu120
agc ttc caySer Phe Gin
gag tgc cgg gtcGlu Cys Arg Val
agcSer130
acc ttc ccc gccThr Phe Pro Ala
ggcGly135
gcg cggAl a Arg
140
ctg cgg ctc cgaLeu Arg Leu Arg
gtgVal145
ctg gtg cct ccc ctg ccc tca ctg aatLeu Val Pro Pro Leu Pro Ser Leu Asn
150
cctPro155
ggt cca gca ctaGly Pro Ala Leu
gaaGlu160
gag ggc cag ggcGlu Gly Gin Gly
ctgLeu165
acc ctg gca 9ccThr Leu Ala Ala
tgc aca gctCys Thr Ala
gag ggc agc cca gcc ccc agcGlu Gly Ser Pro Ala Pro Ser
175 180
gtg acc tgg gacVal Thr Trp Asp
acg gagThr Glu185
gtc aaa ggc aca acg tcc agc cgt. tcc ttc aag cac tcc
Val Lys Gly Thr Thr Ser Ser Arg Ser Phe Lys His Sercgc tct gctArg Ser Ala200
869
10/105
gcc gtc accAla Val. Thr
205
tca gag ttc cac ttg gtg cct agc cgcSer Giu Phe His Leu Val Pro Ser Arg
atg aat gggMet Asn Giy00
0
cag cca ctg act tgt gtg gtg tccGin Pro Leu Thr Cys Val Val Ser
220 225
cat cct ggcHis Pro Gly
ctgLen230
ctc cag gac caaLeu Gin Asp Gin
aggArg235
atc acc cac atcIle Thr His Ile
ctc cac gtg tcc ttc cttLeu His Vai Ser Phe Leu240 245
gct gag gcc tctAla Glu Ala Ser
agg ggc ctt gaaArg Giy Leu Giu
caa aat ctg tggGin Asn Leu Trp
att ggc aga gaaIle Giy Arg Giu
gga gctGly Ala265
965
1013
1063.
1109
1157
atg ctc aagMet Leu Lys
aca cgg ctgThr Arg Leu
285
ctg agt gaa gggLeu Ser Giu Gly
ccc cct ccc tca tac aac tggPro Pro Pro Ser Tyr Asn Trp
gat ggg cct ctgAsp Giy Pro Len
cccPro290
agt ggg gta cgaSer Gly Val Arg
gtgVal295
gat ggg gacAsp Gly Asp
act ttgThr Leu
300
ggc ttt ccc ccaGly Phe Pro Pro
ctgLeu305
acc act gag cacThr Thr Gin His
agcSer310
ggc atc tac gtcGly Ile Tyr Val
tgcCys315
cat gtc agc aatHis Val Ser Asn
ttc tcc tca aggPhe Ser Ser Arg
tct cag gtc actSer Gin Val Thr
gtgVal330
1205
1253
1301gat gtt ctt gacAsp Val Leu Asp
cccPro335
cag gaa gac tctGin Gin Asp Ser
aag cag gtg gacLys Gin Val Asp
cta gtgLeu Val345
tca gcc tcgSer Ala Ser
ctt ctg gtgLeu Leu Val
365
gtgVal1350
gtg gtg gtg ggtVal. Val Var- Gly
gtgVal355
atc gcc gca ctcIle Ala Ala Leu
ttg ttc tgcLeu Phe Cys360
cgg cgc aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
ctcLeu370
atg tcc cga tacMet Ser Arg Tyr
gcc cagAla Gin
380
cag atg acc cagGin Met Thr Gin
tat gag gag gagTyr Gin Gin Gin
acc ctg acc aggThr Len Thr Arg
1445
gagGiu395
aac tcc atc cggAsn Ser Ie Arg
aggArg400
ctg cat tcc cat cac acg gac ccc aggLen His Ser His His Thr Asp Pro Arg
405
agcSer410
1493
cag ccg gag gagGin Pro Gin Glu
agtSer415
gta ggg ctg agaVal Gly Leu Arg
gccAl a420
gag ggc cac cctGiu Gly His Pro
gat agtAsp Ser425
1541
ctc aag gacLen Lys Asp
agt agc tgc tct gtg atg agt gaa gag ccc gag ggcSer Ser Cys Ser Val Met Ser Giu Giu Pro Gin Gly
1589
11/105
cgc agt tac tccArg Ser Tyr Ser
445
acg ctg acc acg gtg agg gag ata gaa aca cag act
Thr Leu Thr Thr Vai Arg Giu Ile Giu Thr Gin Thr450 45500
00
gaa ctgGiu Leu
460
ctg tct cca ggcLeu Ser Pro Gly
tctSer465
ggg cgg gcc gagGly Arg Aia Giu
gagGiu470
gag gaa gat cagGiu Giu Asp Gin
gatAsp475
gaa ggc atc aaaGiu Giy Ile Lys
cagGin480
gcc atg aac catAla Met Asn His
t ttPhe485
gtt cag gag aatVal Gin Glu Asn
gggGly490
1637
1685
1733
1781
1836
acc cta cgg gccThr Leu Arg Ala
aagLys495
ccc acg gycPro Thr Gly
aat ggcAsn Gly
500
atc tac atc aatIle Tyr Ile Asn
ggg cggGly Arg505
gga cac ctgGly His Leu
tga cccaggcctg cctcccttcc ctaggcctgg ctccttctgt
tgacatggga gattttagct catcttgggg gcctccttaa acacccccat ttcttgcgga 1896
agatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggat tgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
catcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaat tagggtgtgataccttggggagagaaggtgctgggcttctggatga ccc agatactctgctggatacttcgaatggcatatttgt
actgcttgacctcccaccatac tgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggc cagtc cc tcctctgggccaggaatacttagttgtat tttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgc:aatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggact cagc cagttctggcctatggagcctgaacataaaatg
ctttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtggttactcttggacctgattatagacctcgcctttccttggggctggaatacctagaagggagaggcagatctaagaatattctgtt
aacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcttgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcacttttaattttttattt t tctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcatcggga 1956gtgcatgtgt 2016tggaggggtg 2076tggtgtatgt 2136tgtgtcatgt 2196agcagtatta 2256tgtgcgggca 2316cttcggagcc 2376ctgttacaga 2436tgtaaatata 2496tttttctttt 2556attttttttt 2616caagcaatcc 2676cctgctttga 2736aatgtttact 2796gtgattgtga 2856cctgagagct 2916aaattgcatc 2976ctcctgttca 3036gagttgaggt 3096tggatcacta 3156ggtttatttt 3216aaactcttct 3276cgttccccag 3336tacattttat 3396cagacaaaac 3456
3464
<210> 7<211> 510<212> PRT<213> Homo sapiens
<400> 7Met pro Leu Ser Leu Gly Ala Glu Met Trp, Gly1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly25
Giu Leu Giu Thr Ser Asp Val Vai Thr Val Val
Pro Glu Ala Trp Leu
Arg Cys Pro Ala Gly
Leu Gly Gin Asp Ala
12/105
40
00 Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin55
Val Ala Trp Ala Arg Val Asp Ala Gly Giu Gly Ala Gin Glu Leu Ala(I 65 70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Giu Gly90
S Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Giu Cys ArgC1115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
130 135 140Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Giu145 150 155 160Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
00180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270Giu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285Leu Pro Ser Giy Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350Val Gly Vai Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Giu Giu Giu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Giu Ser Val
405 410 415Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430Cys Ser Val Met Ser Glu Giu Pro Giu Gly Arg Ser Tyr Ser Thr Leu
435 440 445Thr Thr Val Arg Glu Ile Glu Thr Gin Thr Giu Leu Leu Ser Pro Gly
450 455 460Ser Gly Arg Ala Glu Giu Giu Glu Asp Gin Asp Giu Giy Ile Lys Gin465 470 475 480Ala Met Asn His Phe Val Gin Giu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495Thr Gly Asn Giy Ile Tyr Ile Asn Gly Arg Gly His Leu Val,
500 505 510
13/ 105
00
00
<210><211><212><213>
834G4DNAHomo sapiens
<220><221> CDS<222> (264)
<400> 8ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagt
(1796)
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagctctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa cttcagaaacacc atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Glu Met Trp
ggg cct gag gccGly Pro Glu Ala
tggTrp
ctg ctg ctg ctgLeu Leu Leu Leu
cta ctg ctg gca tca ttt acaLeu Leu Leu Ala Ser Phe Thr20
acc tca gac gtg gta act gtgThr Ser Asp Val Val Thr Val
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
gcg ggt gag ctgAla Gly Glu Leu
389
cag gac gca aaaGin Asp Ala Lys
ccc tgc ttc tacPro Cys Phe Tyr
ggg gac tccGly Asp Ser
ggc gagGly Glu
caa gtg ggg caaGin Val Gly Gin
gca tgg gct cggAla Trp Ala Arg
gac gcg ggc gaaAsp Ala Gly Glu
ggcGly
gcc cag gaa ctaAla Gin Glu Leu
gcgAla
cta ctg cac tccLeu Leu His Ser
tac ggg ctt catTyr Chly Leu His
agc ccg gct tacSer Pro Ala Tyr
ggc cgc gtg gagGly Arg Val Glu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggc gag tacGly Glu Tyr
125
tca gtg ctc ctgSer Val Leu Leu
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Glu120
agc ttc cagSer Phe Gin
gag tgc c99 gtcGlu Cys Arg Val
acc ttc ccc gccThr Phe Pro Ala
ggcGly135
gcg cggAl a Arg
140
ctg cgg ctc cgaLieu Arg Leu Arg
ctg gtg cct cccLeu Val Pro Pro
ccc tca ctg aatPro Ser Leu Asn
cctPro155
ggt cca gca cta gaa gag ggc cag ggcGly Pro Ala Leu Glu Glu Gly Gin Gly
ctg acc ctg gca gcc tccLieu Thr Lieu Ala Ala Ser165 170
773
821tgc aca gct gag ggc agc cca gcc ccc agc gtg acc tgg gac acg gag
14/105
Cys Thr Ala Glu Gly175
Ser Pro Ala Pro Ser180
Val Thr Trp Asp Thr Glu18500
0
gtc aaa ggcVal Lys Gly
gco gtc accAla Val Thr
205
acg tcc agc cgtThr Ser Ser Arg
tccSer195
tto aag cac tooPhe Lys His Ser
cgc tct goctArg Ser Ala200
atg aat gggMet Asn Gly
tca gag ttc cacSer Giu Phe His
gtg cct agc cgoVal Pro Ser Arg
cag ccaGin Pro
220
ctg act tgt gtgLeu Thr Cys Val
gtgVal225
tcc cat cot ggcSer His Pro Gly
ctgLeu230
ctc cag gac caaLeu Gin Asp Gin
869
917
965
1013
1061
aggArg235
ato aco cac atoIle Thr His Ile
cac gtg too ttcHius Val Ser Phe
got gag gco totAla Glu Ala Ser
gtgVal250
agg 990: ctt gaaArg Gly Leu Giu
gacAsp255
caa aat ctg tggGin Asn Leu Trp
att ggc aga gaaIle Gly Arg Giu
gga gotGly Ala265
atg otc aagMet Leu Lys
aca 099 otgThr Arg Leu
285
ctg agt gaa gggLeu Ser Giu Gly
cagGin275
ccc cct coo tcaPro Pro Pro Ser
tao aac tggTyr Asn Trp280
gat ggg gaoAsp Gly Asp
1109
1157gat ggg cot ctgAsp Gly Pro Leu
agt 999 gta. ogaSer Gly Val Arg
gtgVal295
act ttgThr Leu
300
990 ttt Occ ocaGly Phe Pro Pro
ctgLeu305
aco act gag cacThr Thr Giu His
agoSer310
ggc ato tac gtoGly Ile Tyr Val
1205
1253cat gtc ago aatHis Val Ser Asn
ttc too tca aggPhe Ser Ser Arg
tot cag gto actSer Gin Val Thr
gtgVal1330
gat gtt Ott gaoAsp Val Leu Asp
cooPro335
cag gaa gao tot ggg aag oag gtg gaoGin Giu Asp Ser Gly Lys Gin Val Asp
340
ota. gtgLeu Val345
1301
toa goc togSer Ala Ser
ott ctg gtgLeu Leu Val
365
gtgVal350
gtg gtg gtg ggtVal Val Val Gly
ato 900 goa otoIle Ala Ala Leu
ttg tto tgoLeu Phe Cys360
099 090: aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
otoLeu370
atg too cga taoMet Ser Arg Tyr
900 cagAla Gin
380
cag atg aco cag aaa tat gag gag gagGin Met Thr Gin Lys Tyr Giu Giu Giu
385
ctgLeu390
aco ctg aco aggThr Leu Thr Arg
1445
aac too ato 099
Asn Ser Ile Argotg cat too oatLeu His Ser His
caoHis405
acg gao coo aggThr Asp Pro Arg
1493
oag ccg gag gag agt gta ggg otg aga goc gag ggc cac oct gat agt 1541
105
Gin Pro Giu Giu Ser Val Gly Leu Arg Ala Glu Gly His Pro Asp Ser
00ctc aag gacLeu Lys Asp
cgc agt tacArg Ser Tyr
445
aacAsn430
agt agc tgc tct gtg atg agt gaa gag ccc gag ggc
Ser Ser Cys Ser Val Met Ser Glu Glu Pro Giu Gly435 440
tcc acg ctg accSer Thr Leu Thr
acg gtgThr Val450
agg gag ataArg Glu Ile
gaaGlu455
aca cag actThr Gin Thr
1589
1637
1685gaa ctgGlu Leu
460
ctg tct ccaLeu Ser Pro
ggc tctGly Ser
465
ggg cgg gcc gagGly Arg Ala Giu
gagGlu470
gag gaa gat cagGiu Glu Asp Gin
gatAsp475
gaa ggc atc aaa cag gcc atg aac catGiu Gly Ile Lys Gin Ala Met Asn His
tttPhe485
gtt cag gagVal Gin Giu
aat gggAsn Gly
490
1733
1781acc cta cgg gccThr Leu Arg Ala
aagLys495
ccc acg ggc aatPro Thr Gly Asn
ggcGly500
atc tac atcIle Tyr Ile
aat ggg cggAsn Gly Arg
505
gga cac ctg gtc tga cccaggcctg cctcccttcc ctaggcctgg ctccttctgt 1836
Gly His Leu Val510
tgacatgggaagatgctcccgggctccacgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggcctagtctgaaaccagcctagggtaaatatgtttgaaaaa
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatt tgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccagtgtggccagtccctcctctgggccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
gcctccttaat t tacCt ccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagCccctcgtggttactcttggacctgattatagactcgcCtttcttggggctggaatacctagaagggagaggcagatctaagaatat t ctgt t
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtt tggcgtg,cagaccccagc aga ccc aggtctcctaccagaggcttgaaacatattttcacttttaattttttatttttctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcttgcgga 1896ttcatcggga 1956gtgcatgtgt 2016tggaggggtg 2076tggtgtatgt 2136tgtgtcatgt 2196agcagtatta 2256tgtgcgggca 2316cttcggagcc 2376ctgttacaga 2436tgtaaatata 2496tttttctttt 2556attttttttt 2616caagcaatcc 2676cctgctttga 2736aatgtttact 2796gtgattgtga 2856cctgagagct 2916aaattgcatc 2976ctcctgttca 3036gagttgaggt 3096tggatcacta 3156
ggtttatttt 3216aaactcttct 3276cgttccccag 3336tacattttat 3396cagacaaaac 3456
3464
4210> 9<211> 510<212> PRT<213> Homo sapiens
16/105
00 <400> 9Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10 Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
c~Glu Leu Giu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp AlaLysLe 40 LsLuPro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gln Val Gly Gin
55 Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Giu Leu Ala
70 75 Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly1-85 90 Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
C1100 105 110Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Giu Tyr Giu Cys Arg
115 120 125
00 Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu GluC1 145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Gly Thr Thr Ser180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Vai Arg Gly Leu Giu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Vai Asp Val Leu Asp Pro Gin
325 330 335Glu Asp Ser Gly Lys Gin Val Asp Leu Vai Ser Ala Ser Val Val Val
340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Glu Glu Giu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Glu Ser Val
405 410 415
Gly Leu Arg Ala Giu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser420 425 430
Cys Ser Val Met Ser Giu Giu Pro Giu Gly Arg Ser Tyr Ser Thr Leu435 440 445
Thr Thr Val Arg Giu Ile Glu Thr Gin Thr Glu Leu Leu Ser Pro Gly450 455 460
17/105
Ser Gly Arg Ala Giu Glu GJlu Glu Asp Gin Asp Giu Gly Ile Lys Gin
465 470 475 480
Ala Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro485 490 495
Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> <211> 3464<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1796)
00
<400> ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagt
gttggccaCagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagctctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa cttcagaaac
acc atg ccc ctg tcc ctg gga gcc gag atg tggMet Pro Leu Ser Leu Gly Ala Glu Met Trp
ggg cct gag gcc tgg ctg ctg ctg ctgGay Pro Glu Ala Trp Leu Leu Leu Leu
cta ctg ctg gca. tca ttt aca.Leu Leu Leu Ala Ser20
Phe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
ccc gcgPro Ala
ggt gag ctgGly Glu Leu
acc tca gac gtgThr Ser Asp Val
gta act gtgVal Thr Val
ggg gac tccGly Asp Ser
cag gac gca aaa.Gin Asp Ala Lys
ctgLeu50
ccc tgc ttc tacPro Cys Phe Tyr
cgaArg
ggc gagGly Giu
caa. gtg ggg caa.Gin Val Gly Gin
gca. tgg gct cggAla Trp Ala Arg
gac gcg ggc gaaAsp Ala Giy Glu
gycGly
9CC cag gaa ctaAla Gin Glu Leu
gcgAla
cta ctg cac tccLeu Leu His Ser
tac ggg cU: catTyr Gly Leu His
agc ccg gct tacSer Pro Ala Tyr
gagGlu
ggc cgc gtg gagGly Arg Val Giu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
tca gtg ctc ctgSer Val Leu Leu
aac gca gtg cagAsn Ala Val Gin
ggc gag tac gagGly Giu Tyr Giu
125
tgcC9 cg tcCys Arg Val
agcSer130
acc ttc ccc gccThr Phe Pro Ala
ggcGly135
gcg gat gagAla Asp Glu120
agc ttc cagSer Phe Gin
tca ctg aatSer Leu Asngcg cgg ctg cgg ctc cga. gtg ctg gtg
Ala Arg Leu Arg Leu Arg Val Leu Valcct ccc ctg CCCPro Pro Leu Pro
725
18/105
145 150
oct ggt cca gca ota gaa gag ggc cag ggcPro Gly Pro Ala Leu Giu Glu Gly Gin Gly
155 160
ctgLeu165
acc ctg gca gcThr Leu Ala Ala
tgc aca gct gagCys Thr Ala Glu
ago cca gcc cccSer Pro Ala Pro
agcSer180
gtg acc tgg gaoVal Thr Trp, Asp
acg gagThr Giu185
gtc aaa ggcVal Lys Gly
goc gtc accAla Val Thr
205
acaThr190
acg tcc agc cgtThr Ser Ser Arg
toc ttc aag cacSer Phe Lys His195
gtg cct agc cgcVal. Pro Ser Arg
tcc
Ser
agcSer215
090 tct gct
Arg Ser Ala200
atg aat gggMet Asn Giy
tca gag ttc cacSer Giu Phe His
ttgLeu210
cag ocaGin Pro
220
ctg act tgt gtgLeu Thr Cys Val
gtgVal225
too cat oct ggcSer His Pro Gly
otgLeu230
oto cag gao oaaLeu Gin Asp Gin
869
917
965
1013
1061
aggArg235
ato aco cac atoIle Thr His Ile
otoLeu240
cac gtg tco ttoHis Val Ser Phe
got gag goc totAla Glu Ala Ser
gtgVal250
agg ggo ott gaaArg Gly Leu Giu
gaoAsp255
oaa aat otg tggGin Asn Leu Trp
att ggo aga gaaIle Gly Arg Glu
gga gctGly Ala265
atg ote aagMet Leu Lys
aca ogg otgThr Arg Leu
285
tgoCys270
otg agt gaa gggLeu Ser Glu Gly
oagGin275
000 oct 000 tcaPro Pro Pro Ser
tao aac tggTyr Asn Trp280
gat ggg gaoAsp Gly Asp
1109
1157gat ggg cot otgAsp Gly Pro Leu
cooPro290
agt ggg gta ogaSer Gly Val. Arg
act ttgThr Leu
300
ggc ttt coo ocaGly Phe Pro Pro
ace act gag cacThr Thr Glu His
990 ato tao gtoGly Ile Tyr Val
1205
1253cat gto ago aatHis Val Ser Asn
ttc too toa aggPhe Ser Ser Arg
gatAsp325
tot cag gtc actSer Gln Val Thr
gat gtt ott gaoAsp Val Leu Asp
cag gaa gao totGin Giu Asp Ser
aag cag gtg gao ota gtgLys Gin Val Asp Leu Val
.345
1301
tca 900 tcg
Ser Ala Ser
ott ctg gtgLeu Leu Val
365
gtgVal350
gtg gtg gtg ggt gtg ato 900 goa otoVal Val Val Gly Val Ile Ala Ala Leu
355
ttg ttc tgcLeu Phe Cys360
099 cgc aag
Arg Arg Lys
1349
gtg gtg gtg gtgVal Val Val Val
oto
Leu370
atg too cga taoMet Ser Arg Tyr
1397
goc cag cag atg aco cag aaa tat gag gag gag otg aco ctg aco aggAla Gin Gin Met Thr Gin Lys Tyr Giu Giu Glu Leu Thr Leu Thr Arg
1445
19/105
380 80385 390
gag aac tcc atc cggGlu Asn Ser Ile Arg
aggArg400
ctg cat tce catLeu His Ser His
ggg ctg aga. 9CCGly Leu Arg Ala
420
cacHis405
acg gac ccc aggThr Asp Pro Arg
1493
1541cag ccg gag gagGin Pro Glu Glu
agt gta.Ser Val415
gag ggc cac cct gat agtGiu Gly His Pro Asp Ser
425
ctc aag gacLeu Lys Asp
aacAsn430
agt agc tgc tctSer Ser Cys Ser
gtgVal435
atg agt gaa gagMet Ser Glu Glu
ccc gag ggcPro Giu Gly440
aca cag actThr Gin Thr
1589
cgc agtArg Ser
tacTyr445
tcc acg ctg accSer Thr Leu Thr
acgThr450
gtg agg gag ataVal Arg Glu Ile
gaaGiu455
gaaGlu
etg ctg tet cca. ggcLeu Leu Ser Pro Gly460
gaa ggc ate aaa cagGiu Gly Ile Lys Gin
ggg cgg gcc gagGly Arg Ala Glu
gagGiu470
gag gaa gat cagGlu Giu Asp Gin
1637
1685
1733
1781
480
cccPro
gCC atg aacAla Met Asn
acg gge aatThr Gly Asn
cat ttt gtt cag gag aatHis Phe Val Gin Glu Asn
485
acc cta egg gccThr Leu Arg Ala
ggcGly500
ate tac atc aatIle Tyr Ile Asn
ggg cggGly Arg505
gga cacGly His
ctg gte tga cccaggcctg ectcettcc ctaggectgg etccttctgtLeu Val*
510
1836
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgC!catgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggettagctggcectagtctgaaaccagcctagg
gattttagcteatccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctetgccggttggaggatggaatetgcgtgtgaagca.eetctggtgggagcttettgccctttccattctcactatggactcetagaagagaaaaaettaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacecagatactetgctggatacttcgaatg
eatettggggactgettgaccteceaccatactgtgtgtgtatgctgtca.gcgtgggcaa.tgaaaaagcagagaggtggactccggtgtggceagtceet.cctctgggeCcaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccetceatcttcatgcaatgtgagccttagggaattggagageagtgggtgagaatgtttctctgggactcagecagttctggectatggagcctga
gectccttaactttacctccgcatgcaggttgtggaggggtatcagagtecactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtggttactcttggacctgattatagacetcgcctttCCttggggctggaatacctagaagggagaggcagatctaaga
acacceccataaccttetgcactgtgtgttgactgtccgaagtgaactggtt tggcgtgcagaccccagcagacccaggteteetaccagaggcttgaaaeatattttcacttttaattttttatttttetcctgggctcaccaetgtgagat ttat ccgttaattcettgggagggcagagtaaggtagtgaeaaggggagagagtagccc tgggt ttagttcaatgatt tagt acecctcccatectttcctaacatg
ttettgcgga 1896ttcatcggga 1956gtgeatgtgt 2016tggaggggtg 2076tggtgtatgt 2136tgtgtcatgt 2196agcagtatta 2256tgtgcgggca 2316etteggagec 2376ctgttaeaga 2436tgtaaatata 2496tttttctttt 2556attttttttt 2616caagcaatec 2676eetgetttga 2736aatgtttact 2796gtgattgtga 2856cctgagagct 2916aaattgcatc 2976ctcctgttca 3036gagttgaggt 3096tggatcacta 3156ggtttatttt 3216aaactcttct 3276cgttccccag 3336tacattttat 3396
20/105
gtaaatatgt gcatatttgt acataaaatg atattctgtt tttaaataaa cagacaaaac 3456S ttgaaaaa 3464
0S <210> 11
<211> 510<212> PRT<213> Homo sapiens
<400> 11
0 Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp LeuC1 1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly25
S Glu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gln Asp Ala40
C1 Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gln Val Gly Gin55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala
00 65 70 75 Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly
90 C( Arg Val Glu Gln Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg
115 120 125Val Ser Thr Phe Pro Ala Gly Ser Phe Gln Ala Arg Leu Arg Leu Arg
130 135 140.Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu145 150 155 160Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gln Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
21/105
Gly Leu Arg405
Ala Giu420
Gly His Pro410
Asp Ser425Giu Gly
Leu Lys Asp Asn415Ser Ser
00Cys Ser Val Met Ser Giu Giu
435
Thr Thr Val Arg Giu Ile Glu450 455
Ser Gly Arg Ala Giu Giu Giu
Pro440Thr
Arg Ser Tyr445
Giu Leu Leu
Ser Thr Leu
Ser Pro GlyGin Thr460GiuGlu Asp Gin
465Al a
Asp475Thr
Giy Ile Lys
Met Asn His Phe485Ile
Gin Glu Asn G ly490Arg
Leu Arg Ala
Thr Gly Asn Tyr Ile Asn Gly505
Gly His Leu
'210> 12<211> 3344<212> DNA<213> HOMO sapiens
<220><221> CDS<222> (789) (1676)
<400> 12ggccgtcgttacggcttctttcccctagtgcagttccttaagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttcctt
gttggccaca.gggggtagctgagacccaagttcaagtctgctcagacgtgggactccggcccaggaacta.ccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactc
gcgtgggaagacggctgggttgcgagaggcctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctg
cagctctggggtgtagaacgaagaactctgcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctc
ggagctcggagggccggggCcagcttcctgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccac
gctcccgatctggggctgggccttctgggtcccgcgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccctgccctcactcctgcacagacaacgtccattggtgccta.
120180240300360420480540600660720780830
gccgcagc atg aat ggg cag cca. ctg act tgt gtg gtg tcc cat: ccc ggcMet Asn Gly Gin Pro Leu Thr Cys Val Val Ser His Pro Gly
ctgLeu
ctc cag gac caa. aggLeu Gin Asp Gin Arg
20
atc acc cacIle Thr His
ggc ctt gaa.Gly Leu Giu
atc ctcIle Leu
25
cac gtg tccHis Val Ser
ttc cttPhe Leu
cac attHis Ile
878
926gct gag gcc tct gtg agAla Glu Ala Ser Val Arg
gac caa. aat ctg tggAsp Gin Asn Leu Trp,40
ggc aga gaa. gga. gct. atg ctc aagGly Arg Glu Gly Ala Met Leu Lys
ctg agt gaa gggLeu Ser Giu Gly
cag ccc cctGin Pro Pro
agt ggg gtaSer Gly Valccc tca tac
Pro Ser Tyraac tgg aca cggAsn Trp Thr Arg
gat ggg cct ctgAsp Gly Pro Leu
1022
cga gtg gat ggg gac act ttg ggc ttt
Arg Val Asp Gly Asp Thr Leu Gly Pheccc cca ctg acc act gag cacPro Pro Leu Thr Thr Glu His
1070
22/105
agcSer
ggc atc tac gtcGly Ile Tyr Val
tgcCys100
cat gtc agc aatHis Val Ser Asn
gagGlu105
ttc tcc tca agg gatPhe Ser Ser Arg Asp
1118
tct cag gtc actSer Gin Val Thr
gtg gat gtt ott gao ccc cag gaa gaoVal Asp Val Leu Asp Pro Gin Glu Asp115 120
cag gtg gacGin Val Asp
gca ctc ttgAla Leu Leu
145
ctaLeu130
gtg tca gcc tcgVal Ser Ala Ser
gtgVal135
gtg gtg gtg ggtVal Val Val Gly
tct ggg aagSer Gly Lys
125
gtg atc gccVal Ile Ala140
atg too cgaMet Ser Arg
ttc tgo ctt ctgPhe Cys Leu Leu
1166
gtgVal150
gtg gtg gtg gtgVal Val Val Val
tao oatTyr His
160
cgg cgc aag gcArg Arg L~ys Ala
cag atg aco cagGin Met Thr Gin
tat gag gag gagTyr Giu Glu Giu
1214
1262
1310
1358
1406
ctgLeu175
acc otg acc aggThr Leu Thr Arg
aac tcc atc cggAsn Ser Ile Arg
ctg cat tcc catLeu His Ser His
aog gao ccc aggThr Asp Pro Arg
cag cog gag gagGin Pro Glu Giu
gta ggg ctg agaVal Gly Leu Arg
goc gagAla Glu205
ggc cac cotGly His Pro
gaa gag cccGlu Glu Pro
225
gatAsp210
agt otc: aag gaoSer Leu Lys Asp
aacAsn215
agt agc tgc totSer Ser Cys Ser
gtg atg agtVal Met Ser220
gtg agg gagVal Arg Giu
1454
1502gag ggc cgc agtGlu Gly Arg Ser
tacTyr230
tcc acg ctg acoSer Thr Leu Thr
acgThr235
ata gaaIle Giu
240
aca cag act gaaThr Gin Thr Glu
o tgLeu245
ctg tct oca ggcLeu Ser Pro Gly
ggg cgg goc gagGly Arg Ala Glu
gagGiu255
gag gaa gat cagGlu Giu Asp Gin
gaa ggo atc aaaGiu Gly Ile Lys
gcc atg aac catAla Met Asn His
1550
1598
1646.
1696
gtt cag gag aatVal Gin Giu Asn
acc cta cgg gccThr Leu Arg Ala
ccc acg ggc aatPro Thr Gly Asn
ggc atcGly Ile285
tac atc aatTyr Ilie Asn
gg gGly290
cgg gga cac ctgArg Gly His Leu
gtc tgaVal*295
cccaggcctg cctccottc
ctaggcctggacaccoocataacottctgcactgtgtgttgactgtcogaagtgaactg
otocttctgtttcttgcggattcatogggagtgcatgtgttggaggggtgtggtgtatgt
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggat
gattttagotcatcccaotgaattgagtctgtgttgactgtggtgtgtatttgagtggtt
catcttggggactgcttgac:otcccacoatactgtgtgtgtatgctgtcagcgtgggcaa
goctocttaactttacctocgoatgcaggttgtggaggggtatcagagtocactgtcagg
175618161876193619962056
23/105
00
00
gtttggcgtgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcact t ttaat tttttatttttct cc tgggc tcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
tgtgtcatgtagcagtattatgtgcgggcacttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttgaaatgtttactgtgattgtgacctgagagctaaattgcatcctcctgttca.gagttgaggttggatcactaggtttattttaaactcttctcgttccccagtacattttatcagacaaaac
ggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaacc ag cc tagggtaaatatgtttgaaaaa
gacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcct ccc tagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
tgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
ggtattttct 2116gactgtggct 2176agggaacctg 2236gggtcagcca 2296tgctgcatgt 2356gctccgaatc 2416ttttatttat 2476tggccttgaa 2536tttaagtgta 2596gaaagccttt 2656acaccagggg 2716ggcagcccct 2776cgtggttact 2836cttggacctg 2896attatagacc 2956tcgcctttcc 3016ttggggctgg 3076aatacctaga 3136agggagaggc 3196agatctaaga 3256atattctgtt 3316
3344
<210> 13<211> 295<212> PRT<213> H-omo sapiens
<400> 13Met Asn Gly Gin Pro Leu Thr Cys1
Oin Asp Gin Arg Ile
Ser Val Arg GlyAla
Thr His Ile
Leu Glu Asp40
Lys Cys Leu
Val Val10
Leu His25Gin Asn
Val Ser Phe
Leu Trp
Ser His Pro Gly
Glu Giy Ala
Leu Leu
His
Pro
Leu Ala Glu
Ile Gly Arg
Pro Pro SerMet Leu Ser Giu Giy
Asn55Asp
Gin
SerTyr
Asp
Trp Thr Arg Gly Pro Leu Pro
Thr
Gly Val Arg
Gly Asp Thr Leu Phe Pro Pro Thr Glu His Ser G.ly
HisIle Tyr Val
Val Thr Val115
Asp Leu Val
Cys100Asp
Val Ser Asn Giu105Gin
Ser Ser Arg Asp Ser Gin110Lys Gin ValVal Leu Asp Pro
120Val
Glu Asp Ser Gly125IleSer Ala Ser Val Val Gly Ala Ala Leu
130Lell Phe Cys Leu Leu145Arg
ValI50Gin
Val Val Val Leu155Tyr
Ser Arg Tyr
Arg Lys Ala Gin Met Thr Gin Lys170Leu
Glu Glu Glu Leu Thr175
Leu Thr Arg
Pro Arg Ser195
Pro Asp Ser210
Pro Glu Gly
Glu180Gin
Asn Ser Ile Arg Arg185Val
His Ser His
Pro Glu Glu Ser200Ser
Gly Leu Arg
His Thr Asp190Giu Gly His
Ser Glu GiuLeu Lys Asp
Arg Ser Tyr230
Asn215Ser
Ser Cys Ser
225Thr
Thr Leu Thr Thr235
Pro Giy Ser Gly
Vai Arg Glu Ile Glu240
Arg Ala Glu Giu GiuGin Thr Glu Leu Leu Ser
24/105
00
245Glu Asp Gin Asp Giu Gly Ile
260Giu Asn Gly Thr Leu Arg Ala
275Asn Gly Arg Gly His Leu Val
290 295
250 255Lys Gin Ala Met Asn His Phe Val. Gin
265 270Lys Pro Thr Gly Asn Gly Ile Tyr Ile280 285
<210> 14<211> 3389<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1721)
<400> 14ggcCgtcgttacggcttctttcccctagtgcagttcctta*gctgggcagt
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagetctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa cttcagaaacacc atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Glu Met Trp,1 5
ggg ect gag gcc tgg ctg ctg ctg ctgGly Pro Giu Ala Trp Leu Leu Leu Leu
ctaLeu20
ctg ctg gca tea ttt acaLeu Leu Ala Ser Phe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
ccc gcgPro Ala
ggt gag ctgGly Giu Leu
gag acc tea gac gtg gta act gtgGiu Thr Ser Asp Val Val. Thr Vai35
ccc tgc ttc tac cga ggg gac tccPro Cys Phe Tyr Arg Gly Asp Ser
cag gac gca aaaGin Asp Ala Lys
ggc gagGly Giu
eaa gtg ggg caaGin Val Gly Gin
gca tgg gct eggAla Trp Ala Arg
gac geg gge gaaAsp Ala Gly Giu
485
ggc gee cag gaa cta geg eta ctg cac teeGly Ala Gin Giu Leu Ala Leu Leu His Ser
aaaLys
tac ggg ctt catTyr Gly Leu His
age ceg get tacSer Pro Ala Tyr
ggc ege gtg gagGly Arg Val Giu
cagGin100
ceg cog ccc ecaPro Pro Pro Pro
cgc aacArg Asn105
eec etg gacPro Leu Asp
ggc gag tacGly Giu Tyr
125
ggcGly110
tea gtg etc etgSer Val Leu Leu
aae gca gtg cagAsn Ala Val. Gin
geg gat gagAla Asp Giu120
age ttc eagSer Phe Gin
gag tge egg gteGiu Cys Arg Val.
ace ttc ccc geeThr Phe Pro Ala
ggcGly135
gcg egg ctg egg etc ega gtg ctg gtg cet ccc etg ccc tea ctg aat 725
25/105
Ala Arg Leu Arg Leu Arg Val. Leu Val Pro Pro Leu Pro Ser Leu Asn
140 145 .15000
0 cct ggt cca gca cta gaa gag ggc cag ggc ctg acc ctg gca gcc tcc 773
Pro Gly Pro Ala Leu Giu Giu Gly Gin Gly Leu Thr Leu Ala Ala Ser
155 160 165 170
tgc aca gct gag ggc agc cca gcc ccc agc gtg acc tgg gac acg gag 821
Cys Thr Ala Giu Gly Ser Pro Ala Pro Ser Val Thr Trp Asp Thr Giu
175 180 185
gtc aaa ggc aca acg tcc agc cgt tcc ttc aag cac tcc cgc tct gct 869
Val Lys Gly Thr Thr Ser Ser Arg Ser Phe Lys His Ser Arg Ser Ala
190 195 200
gcc gtc acc tca gag ttc cac ttg gtg cct agc cgc agc atg aat ggg 917
Ala Val Thr Ser Giu Phe His Leu Val Pro Ser Arg Ser Met Asn Gly205 210 215
00 cag cca ctg act tgt gtg gtg tcc cat cct ggc ctg ctc cag gac caa 965'
Gin Pro Leu Thr Cys Val Val Ser His Pro Gly Leu Leu Gin Asp Gln
220 225 230
agg atc acc cac atc ctc cac gtg tcc ttc ctt got gag gcc tct gtg 1013
Arg Ile Thr His Ile Leu His Val Ser Phe Leu Ala Glu Ala Ser Val
235 240 245 250
agg ggc ctt gaa gac caa aat ctg tgg cac att ggc aga gaa gga gct 1061
Arg Gly Leu Giu Asp Gin Asn Leu Trp His Ile Gly Arg Glu Gly Ala
255 260 265
atg ctc aag tgc otg agt gaa ggg cag ccc cct ccc tca tac aac tgg 1109
Met Leu Lys Cys Leu Ser Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp,
270 275 280
aca cgg ctg gat ggg cct. ctg ccc agt ggg gta cga gtg gat ggg gao 1157
Thr Arg Leu Asp Gly Pro Leu Pro Ser Gly Val Arg Val Asp Gly Asp
285 290 295
act ttg ggc ttt ccc cca ctg acc act gag cac agc ggc atc tao gtc 1205
Thr Leu Gly Phe Pro Pro Leu Thr Thr Giu His Ser Gly Ile Tyr Val
300 305 310
tgc cat gtc ago aat gag ttc tcc tca agg gat tct cag gtc act gtg 1253
Cys His Val Ser Asn Giu Phe Ser Ser Arg Asp Ser Gin Val Thr Val
315 320 325 330
gat gtt ctt gao ccc cag gaa gao tct ggg aag cag gtg gac cta gtg 1301
Asp Val Leu Asp Pro Gin Giu Asp Ser Gly Lys Gin Val. Asp Leu Val335 340 345
tca gcc tcg gtg gtg gtg gtg ggt gtg atc gcc gca ctO ttg ttc tgc 1349
Ser Ala Ser Val Val Val Val Gly Vai Ile Ala Ala Leu Leu Phe Cys
350 355 360
ott ctg gtg gtg gtg gtg gtg otc atg too cga tao cat cgg cgc aag 1397
Leu Leu Val Val. Val Val Val Leu Met Ser Arg Tyr His Arg Arg Lys
365 370 375
gcc cag cag atg aco cag aaa tat gag gag gag ctg aco ctg aco agg 1445
26/105
Ala Gin380
Gin Met Thr Gin Lys385
Tyr Giu Giu Giu Leu390
Thr Leu Thr Arg
00
00
aac tcc atc cggAsn Ser Ile Arg
aggArg400
ctg cat tcc catLeu His Ser His
cacHis405
acg gac ccc aggThr Asp Pro Arg
agcSer410
cag agt gaa. gagGin Ser Giu Giu
gag ggc cgc agtGiu Gly Arg Ser
tacTyr420
tcc acg ctg accSer Thr Leu Thr
acg gtgThr Val425
agg gag ata.Arg Glu Ile
gaa.Glu430
aca. cag act gaa.Thr Gin Thr Giu
ctgLeu435
ctg tct cca. ggcLeu Ser Pro Gly
tct ggg cggSer Gly Arg440
gcc atg aacAla Met Asn
1493
1541
1589
1637
1685
1731
.gcc gag gag gag gaa gat cagAla Giu Glu Giu Giu Asp Gin
gaa ggc atc aaa.Glu Gly Ile Lys
cat tttHis Phe
460
gtt cag gag aatVal Gin Glu Asn
gggGly465
acc cta cgg gccThr Leu Arg Ala Pro Thr Gly Asn
cccaggcctgggcGly475
atc tac atc aatIle Tyr Ile Asn
cgg gga. cac ctg gtc tga.Arg Gly His Leu Val*
485
cctcccttccgcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccagggggggagcccctcgtggttactcttggacctgattatagacctcgcctttccttggggctggaatacctagaagggagagg cagatctaagaatattctgtt
ctaggcctggacacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcacttttaattttttatttttctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatga.tttagtaccctcccatcctttcctaacatgtttaaataaa
ctccttctgtttcttgcgga.ttcatcgggagtgcatgtgttggaggggtgtggtgtatgttgtgtcatgtagcagtattatgtgcgggca.cttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttga.aatgtttactgtgattgtgacctgagagctaaattgcatcctcctgttcagagttgaggttggatcacta.ggtttattttaaactcttctcgttccccagtacattttatcagacaaaac
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaa.agccctctgccatgcgccggttttttcttgagagatggagtcctgcctca.atcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggagga.tggaatctgcgtgtgaagca.cctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggca.gaaattagggtgtgataccttggggagagaaggtgctgggcttctggatga ccc aga tactctgctggatacttcgaatggcatatttgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtca.gcgtgggcaatgaaaaagcagagaggtggactccggtgtqgccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctcca,tcttcatgca.atgtgagccttagggaattggagagcagtgggtgagaatgt tt ctc tgggact cagc cagttctggcctatggagcctga.acataaaatg
1791185119111971203120912151221122712331239124512511257126312691275128112871293129913051311131713231329133513389
<210> <211> 485<212> PRT<213> Homo sapiens
27/105
<400>
00 Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
C120 25
S Glu Leu Giu Thr Ser Asp Val Val Thr Val Val Leu Gly Gln Asp Ala
40
55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gln Glu Leu Ala
70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Giu Gly
90
Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
c1100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Giu Cys Arg
115 120 125
Vai Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
00 130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
195 200 205
His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255
Asn Leu Trp His Ile Gly Arg Giu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335
Giu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350
Val Gly Vai Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Glu Giu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
385 390 395 1 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Ser Glu Giu Pro Glu
405 410 415
Gly Arg Ser Tyr Ser Thr Leu Thr Thr Val Arg Glu Ile Glu Thr Gin
420 425 430
Thr Giu Leu Leu Ser Pro Gly Ser Gly Arg Ala Glu Giu Giu Giu Asp
435 440 445
Gin Asp Giu Gly Ile Lys Gin Ala Met Asn His Phe Val Gin Glu Asn
450 455 460
28/105
Gly Thr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile Tyr Ile Asn Gly465 470 475 480Arg Gly His Leu Val.
485
<210> 16<211> 3401'212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1796)
<400> 16ggCcgtcgttacggcttctttcccctagtgcagttccttagctgggcagt
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagctctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa cttcagaaacacc atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Giu Met Trp
gyg cct gag gccGly Pro Glu Ala
ctg Ctg ctg CtgLeu Leu Leu Leu
ctg ctg gca tcaLeu Leu Ala Ser
ttt acaPhe Thr
341
389ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
cccPro
gcg ggt gag ctgAla Gly Glu Leu
acc tca gac gtg gta act gtgThr Ser Asp Val Val Thr Val
cag gac gca aaaGin Asp Ala Lys
ccc tgc ttc tacPro Cys Phe Tyr
ggg gac tccGly Asp Ser
ggc gagGly Glu
caa gtg ggg caaGin Val Gly Gin
gtgVal65
gca tgg gct cggAla Trp Ala Arg
gtg gac gcg ggc gaaVal Asp Ala Gly Giu
tac ggg ctt cat gtgTyr Gly Leu His Val
ggcGly
gcc cag gaa ctaAla Gin Glu Leu
cta ctg cac tccLeu Leu His Ser
aaaLys
485
533
581agc ccg gct tacSer Pro Ala Tyr
ggc cgc gtg gagGly Arg Val Glu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggc gag tacGly Glu Tyr
125
ggcGly110
tca gtg ctc ctgSer Val Leu Leu
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Giu120
gag tgc cgg gtcGiu Cys Arg Val
acc ttc ccc gcc ggc agc ttc cagThr Phe Pro Ala Gly Ser Phe Gin
135
gcg cggAla Arg
140
ctg cgg ctc cgaLeu Arg Leu Arg
ctg gtg cct cccLeu Val Pro Pro
ccc tca ctg aatPro Ser Leu Asn
29/105
00
0
cct ggt oca gcaPro Gly Pro Ala155
tgc aca gct gagCys Thr Ala Glu
cta gaa gag ggc cag ggc ctgLeu Giu
160Giu Gly Gin Gly Leu
acc ctg gcaThr Leu Ala
gco tccAla Ser
170
aog gagThr Glu185
ggcGly175
agc cca gcc cccSer Pro Ala Pro
agoSer180
gtg acc tgg gacVal Thr Trp Asp
gtc aaa ggc aca acg tcc agc cgt
Val Lys Gly Thr Thr Ser Ser ArgtccSer195
ttc aag cac tcoPhe Lys His Ser
090 tct gctArg Ser Ala200
atg aat gggMet Asn Gly
773
821
869
917
965
1013
9CC gtc acc
Ala Val. Thr205
tca gag ttc cac
Ser Glu Phe HisttgLeu210
gtg cct agc cgcVal Pro Ser Arg
agcSer215
cag coaGin Pro
220
ctg act tgt gtgLeu Thr Cys Val
gtgVal225
toc cat oct ggoSer His Pro Gly
ctgLeu230
ctc cag gac caaLeu Gin Asp Gin
atc acc cac atc:Ile Thr His Ile
cac gtg too ttoHis Val Ser Phe
ottLeu245
got gag goc totAla Glu Ala Ser
agg ggc ott gaaArg Gly Leu Glu
gaoAsp255
oaa aat otg tgg cac att ggo aga gaaGin Asn Leu Trp His Ile Gly Arg Glu
260
gga gotGly Ala265
1061
atg oto aagMet Leu Lys
aoa ogg otgThr Arg Leu
285
otg agt gaa gggLeu Ser Giu Gly
ccc cot coo toaPro Pro Pro Ser
tao aac tggTyr Asn Trp280
gat ggg gaoAsp Gly Asp
1109
1157gat ggg oct ctgAsp Gly Pro Leu
agt ggg gta ogaSer Gly Val Arg
act ttgThr Leu
300
ggo ttt coo coaGly Phe Pro Pro
aco act gag cacThr Thr Glu His
990 ato tao gtoGly Ile Tyr Val
tgoCys315
oat gto ago aatHis Val Ser Asn
tto too tca aggPhe Ser Ser Arg
gatAsp325
tot cag gto actSer Gin Val Thr
1205
1253
1301gat gtt ott gao:Asp Val Leu Asp
cag gaa gao totGin Glu Asp Ser
aag cag gtg gaoLys Gin Val Asp
cta gtgLeu Val345
toa goo togSer Ala Ser
ott otg gtgLeu Leu Val
365
gtg gtg gtg ggtVal Val Val Gly
ato goc gca otoIle Ala Ala Leu
ttg tto tgoLeu Phe Cys360
1349
gtg gtg gtg gtg oto atg too oga taoVal Val Val Val Leu Met Ser Arg Tyr
370
oat cgg cgc aagHis Arg Arg Lys375
1397
goc cagAla Gin
380
cag atg aod cagGln Met Thr Gin
aaaLys385
tat gag gag gag Otg aco otg acc aggTyr Glu Glu Giu Leu Thr Leu Thr Arg
390
1445
30/1
gagGlu395
aac tcc atc cggAsn Ser Ile Arg
agg ctgArg Leu400
cat tcc catHis Ser His
cacHis405
acg gac ccc aggThr Asp Pro Arg
agcSer410
1493
00
00
cag ccg gag gagGin Pro Glu Glu
agtSer415
gta. ggg ctg agaVal Gly Leu Arg
gag ggc cac cctGiu Gly His Pro
gat agtAsp Ser425
cte aag gacLeu Lys Asp
cgc agt tacArg Ser Tyr
445
aacAsn430
tccSer
agt agc tgc tctSer Ser Cys Ser
acg ctg acc acgThr Leu Thr Thr
450
gtgVal1435
atg agt gaa gagMet Ser Giu Giu
ccc gag ggcPro Glu Gly440
aca cag actThr Gin Thr
gtg agg gag ataVal Arg Giu Ile
gaaGiu455
1541
1589
1637
1685
1733
1781
gaa ctgGiu Leu
460
ctg tct cca ggcLeu Ser Pro Gly
tctSer465
ggg cgg gcc gagGly Arg Ala Glu
gag gaa. gat cagGlu Giu Asp Gin
gatAsp475
gaa ggc atc aaaGiu Gly Ile Lys
cagGin480
gcc atg aac catAla Met Asn His
tttPhe485
gtt cag gag aatVal Gin Giu Asn
gggGly490
acc cta cgg gccThr Leu Arg Ala
aagLys495
ccc acg ggc aatPro Thr Gly Asn
ggcGly500
atc tac atc aatIle Tyr Ile Aan
ggg cggGly Arg505
gga cac ctg gtc tgaGiy His Leu Val*
510
cccaggcctg cctcccttcc ctaggcctgg ctccttctgt 1836
tgacatggga gattttagctagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacg
aaggggctacggtagagtctgtggtgttgggtgaaggaggcaaggctcttctggcccacctctgaaatctgcctaggactaatatgtgcaaaaaa
catcccactgaattgagtctgtgttgactgtggtgtgtatt tgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaattagggggagagagagtgctgggggtctggatgtttcagatacactgctggatttctcgaatgtggtatttgtaca
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatg aaa aagc agagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaat taaaggcccctccatcttcatgcaatgtgagcctagcagtgattgagaatgtcgctctgggttgcagccagaattggcctaaggagcctgaagataaaatgata
gcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtgctggtgatagaccgagcctttcccccgggctggagtacctagatttgagaggctcctctaagatccttctgttttt
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcacttttaattttttattttt.ctcctgggctcaccactgtgagatttatccgttaattccttgggagggcaacaagggctcagagtaggagtgggttttggtcaatgaggtagt accc aaacatccttcgt.taacatgtacaaataaacag
ttcttgcgga 1896ttcatcggga 1956gtgcatgtgt 2016tggaggggtg 2076tggtgtatgt 2136tgtgtcatgt 2196agcagtatta 2256tgtgcgggca 2316cttcggagcc 2376ctgttacaga 2436tgtaaatata 2496tttttctttt 2556attttttttt 2616caagcaatcc 2676cctgctttga 2736aatgtttact. 2796gtgattgtga 2856cctgagagct 2916ctgttcaata 2976ttgaggtgag 3036atcactaatt 3096ttatttttag 3156ctcttcttag 3216tccccagcca 3276attttatgta 3336acaaaacttg 3396
3401
311105
<210> 17<211> 510<212> PRT<213> Homo sapiens
00
00
<400> 17Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala
T
1 5 10
Leu L
Glu Li
Lys L
Val A
Leu L
Arg V
Leu L
Val S2
Val I145Glu C
Pro 2
Ser 2
His
Val225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Lys385Leu
eu L
eu G3
eu P0la T
eu H
al G
eu P
er 1.30
ieu
fly
kla
krg
Leu210Ser
Val
Leu
Gly
Pro290Thr
Ser
Asp
Gly
Leu370Tyr
His
eu
lu5ro
rp
.is
Ilu
rg
:hr
lal
31n
Pro
Ser195Val
His
Sei
TrE
G1x27!Se
Thl
Se:
Sce
Va
Me
GI
Se
Leu Leu Leu
Thr Ser Asp
Cys Phe Tyr
Ala Arg Val70
Sen Lys Tyr
Gin Pro Pro100Asn Ala Val
Phe Pro Ala
Pro Pro Leu150
Gly Leu Thr165
Sen Val Thr180Phe Lys His
Pro Ser Arc
Pro Gly Let23(
Phe Leu Al245
His Ile Gi1260
i Pro Pro Pr
r Gly Val Ar
r Glu His Se31
r Arg Asp Sc325
r Gly Lys Gi340
1 lie Ala Al5t Ser Arg Ty
u Glu Glu Le
39
r His His T1405
s
Y
c
c
1
1
I
Ala S
Val V4
Arg G55Asp A
Gly L
Pro P
Gin .P
Gly 135Pro
Leu 2
Trp 2
Ser
Ser I215Leu
Glu
Arg
Sen
Val295Gly
r Gin
n Val
a Leu
r His375
u Thr0r Asp
er P2
al T0
ly A
la G
eu F
~ro
lia 220,er I
3er
kla
%sp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Val
Asp
Leu360Arg
Leu
Pro
he5
hr
sp
ly
is
L.rg
105sp
?he
Leu
Ala
Thx185Sex
Asr
Asr
Se
Gi126!As
G1
TY:
Th
Le34Ph
Ar
Th
Ar
Thr Gly A
Val Val L
Ser Gly G6
Glu Gly A75
Val Ser P90Asn Pro I
Glu Gly C
Gin Ala 2
Asn Pro155
Ser Cys170Glu Val
Ala Ala
Gly Gin
Gin Arg235
Val Arg250
r Ala Met
i Trp Thr
y Asp Thr
r Val Cys315
r Val Asp330
u Val Ser5e Cys Leu
g Lys Ala
.r Arg Glu395
g Ser Gin410
rg
eu
lu0la
'ro
ieu
flu
rg140
.iy
rhr
Lys
Val
Pro220Ile
Gly
Let
ArS
Le
Hi
Va
Al
Le
Gi38As
Cys P3
Gly G
Gin V
Gin G
Ala T
Asp G1
Tyr G125Leu P
Pro I
Ala C
Gly
Thr205Leu
Thr
Leu I
Lys
Leu285Gly
s Val
1 Leu
a Ser
u Val365
n Gin0n Ser
ro A0in A
al G
iu I
-yrC
ly 5
lu
Lrg
1 a
flu
rhr190Ser
rhr
His
G1u
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
Ile
'rp
I a
sp
ily
ieu
flu
3er
:ys
Leu
Leu
31y175Thr
Glu
Cys
IlE
Asi
Let
G1'
Pr
As
Pr33Va
Va
Th
Ar
Leu
Gly
Ala
Gin
Ala
Gly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
i Ser
e Pro
o Pro
n Glu320
o Gln
1 Val
1 Val
.r Gin
g Arg400
Pro Glu Giu Ser Val415
Gly Leu Arg Glu Gly His Pro Ser Leu Lys Asp Asn Ser Ser
430
32/105
00
Cys Ser Val.435
Thr Thr Val450
Per Gly Arg
Met Ser Giu Giu Pro440Thr
Glu Giy Arg Ser Tyr445Leu
Ser Thr Leu
Ser Pro GlyArg Giu Ile
Ala Giu Glu
Glu455Glu
Gin Thr Giu
Giu Asp Gin Asp475Thr
Gly Ile Lys Gin480ProMet Asn His Gin Glu Asn Gly
490Arg
Leu Arg Aia
Thr Gly Asn Gly500
Tyr Ile Asn Gly His Leu
<210> 18<211> 1669<212> DNA<213> Homo sapiens
<220><221> CDS<222> (708)..(1121)
<400> 18gtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctc
ggcctgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgct
cc t tccc tagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacat
gCctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgta
ttctgttgactgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagcc
atgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctc
120180240300360420480540600660716aatatac atg cgc cgg
Met Arg Arg:I
gag cttGiu Leu
ctt gca gga ataLeu Ala Gly Ile
ctc cga. atc actLeu Arg Ile Thr
ttt aatPhe Asn
ttt ttt cttPhe Phe Leu
tttPhe
ttt ttc ttg cccPhe Phe Leu Pro
cca tta gtt gtaPro Leu Val Val. Phe Ile Tyr Phe
764
812
860Phe Tyr Phe Phe
ttaLeu
gag atg gag tctGlu Met Giu Ser
tat gtt gct cagTyr Val Ala Gin
gct ggcAla Gly
ctt gaa ctcLeu Glu Leu
gct ggg act
Ala Gly Thr
ggc tca agc aatGiy Ser Ser Asn
cctPro
cct gcc tcaPro Ala Ser
gcc tcc cta gtaAla Ser Leu Val
gaa tcc ttt acgGiu Ser Phe Thr
tta agt gta cacLeu Ser Val His
tgt gcc tgc tttCys Ala Cys Phe
aag agaLys Arg
aaa aaa aaa tta aag aaa gcc ttt aga ttt atc caa tgt ttaLys Lys Lys Leu Lys Lys Ala Phe Arg Phe Ile Gin Cys Leu
1004
331105
00cta ctg gga ttg ctt aaa gtg agg ccc ctc caa cac cag ggg gtt aat
Leu Leu Gly Leu Leu Lys Val Arg Pro Leu Gin His Gin Gly Val Asn
100 105 110 115
tcc tgt gat tgt gaa agg ggc tac ttc caa ggc atc ttc atg cag gca
Ser Cys Asp Cys Giu Arg Gly Tyr Phe Gin Gly Ile Phe Met Gin Ala
120 125 130
gcc cct tgg gag ggc acc tga gagctggtag agtctgaaat tagggatgtg
Ala Pro Trp Giu Gly Thr*135
1052
1100
1151
agcctcgtggaattgcttggcagtgattatgaatgtcgccctgggttggggccagaatacgcctaagggacctgaagatcaaatgatat t
ttactgagtaacctggtgacagaccgagagtttccccctggctggagttcctagatttaggaggctcccataagatcctactgtttttaa
aggtaaaattaagggctcctagtaggagttggttttggataatgaggttttacccaaacttccttcgttcacatgtacatataaacagac
gcatccaccagttcaatagtgaggtgaggtc act aat t caatttttagctcttcttagtccccagccagctttatgtaaaaaaacttg
ttgtttgtgaggtgttgggggaaggaggtgaggctcttctggcccacccatgaaatctgcctaggacttctatgtgcata
taccttagggagagagagagctgggggtgaggatgtttctgatacactcatggatttctggaatgtggagtttgtacata
121112711331139114511511157116311669
<210> 19<211> 137<212> PRT<213> Homo sapiens
<400> 19Met Arg Arg Giu Leu Leu Ala Gly Ile Leu
Phe Pro
Leu Arg Ile Thr Phe Asn
Phe Phe Leu Phe Phe Phe Leu Pro
Tyr Phe Tyr Phe Tyr Phe Phe Leu40
Gin Ala Gly Leu Glu Leu Leu Giy55
Ser Leu Vai Ala Giy Thr Leu Ser70
Ser Phe Thr Lys Arg Lys Lys Lys
Leu Val Val25Glu Met Giu Ser His
Pro
Phe Phe Ile
Tyr Val Ala
Ala Ser AlaSer Ser Asn Pro
CysVal His His
Lys
Ala Cys Phe
Leu Ala Phe Arg Phe Ile
Gin Cys Leu Leu Leu Gly Leu Leu Lys100 105
Gly Val Asn Ser Cys Asp Cys Giu Arg2.15 120
Met Gin Ala Ala Pro Trp Giu Gly Thr
130 135
Arg Pro Leu Gin His Gin110
Tyr Phe Gin Gly Ile Phe125
Giy
<210> <211> 3464<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1796)
<400>
ggccgtcgtt gttggccaca gcgtgggaag cagctctggg ggagctcgga gctcccgatc
34/105
00
00
acggcttctt. gggggtagct acggctgggt. gtgtagaacg gggccggggc tggggctgggtcccctagtg gagacccaag tgcgagaggc aagaactctg cagcttcctg ccttctgggt-cagttcctta ttcaagtctg cagccggctc ccagggagat ctcggtggaa cttcagaaacgctgggcagt ctgcctttca acc: atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Glu Met Trp
ggg cct gag gccGly Pro Glu Ala
ggc cgg tyc cccGly Arg Cys Pro
gtg ctg ggc cagVal Leu Gly Gin
ctg ctg ctg ctgLeu Leu Leu Leu
ctg ctg gca tcaLeu Leu Ala Ser
ttt acaPhe Thr
gcg ggt gag ctgAla Gly Glu Leu
acc tca gac gtg gta act gtgThr Ser Asp Val Val. Thr Val
gac gca aaaAsp Ala Lys
ctgLeu50
ccc tgc ttc tacPro Cys Phe Tyr
cgaArg
ggg gac tccGly Asp Ser
341
389
437
485
533
581
ggc gagGly Glu
caa gtg ggg caaGin Val Gly Gin
gca tgg gct cggAla Trp Ala Arg
gac gcg ggc gaaAsp Ala Gly Giu
ggc gcc cag gaa ctaGly Ala Gin Glu Leu
agc ccg gct tac gagSer Pro Ala Tyr Glu
cta ctg cac tccLeu Leu His Ser
tac ggg ctt. catTyr Gly Leu His
ggc cgc gtg gagGly Arg Val Glu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggc gag tacGly Glu Tyr
125
tca gtg ctc ctgSer Val Leu Leu
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Glu120
agc ttc cagSer Phe Gin
gag tgc cgg gtcGlu Cys Arg Val
acc ttC ccc gccThr Phe Pro Ala
gcg CggAla Arg
140
ctg cgg ctc cgaLeu Arg Leu Arg
gtgVal145
ctg gtg cct cccLeu Val Pro Pro
ccc tca ctg aatPro Ser Leu Asn
ggt cca gca ctaGly Pro Ala Leu
gaaGlu160
gag ggc cag ggcGlu Gly Gin Gly
acc ctg gca gccThr Leu Ala Ala
tgc aca gct gagCys Thr Ala Glu
agc cca gcc cccSer Pro Ala Pro
gtg acc tgg gacVal Thr Trp Asp
acg gagThr Giu185
gtc aaa ggcVal Lys Gly
gcc gtc accAla Val Thr
205
acg tcc agc cgtThr Ser Ser Arg
ttc aag cac tccPhe Lys His Ser
cgc tct. gctArg Ser Ala200
atg aat gggMet Asn Gly
869
917tca gag ttc cacSer Glu Phe His
ttgLeu210
gtg cct agc cgcVal Pro Ser Arg
agc:Ser215
cag cca ctg act tgt gtg gtg tcc cat cct ggc ctg ctc: cag gac caa
35/105
Gin Pro Leu Thr Cys Val Val Ser His Pro Gly Leu Leu Gin Asp Gin220
00
00
agg aArg I235
agg 9Arg G
atg c
Met L.
aca c
Thr P
acttThr
tgcCys315
gatAsp'
teaSer
cttLeu
geeAla
gagGlu395
cagGin
etcLeu
cgeArg
tcle
goly
to
~rg
tgjeu00
atIi S
gttVal
gccAla
ctLet
cacG1x381
aa(As~
eecPr
aaLy
agSe
aec cThr H
ott gLeu C
aagtLys
ctgLeu285
ggcGly
gteVal
ottLeu
tcgSer
gtg1Val
365
3 eag.i Gin0
*teeSer
9 gago Giu
ac ate[is Ile
~aa gaoflu Asp
255
:90 ctgys Leu270
3at gggksp Gly
ttt cooPhe
ageSer
gaoAsp
gtgVal350
gtgVal
atgMet
ateIle
gagGlu
aaeAsn430
tooSer
Pro
aatAsn
cooPro335
gtgVal
gtgVal
aceThr
eggArg
ag tSer415
agtSer
acThi
225
ctc eac g1Eieu His V~240
caa aat cGln Asn L
agt gaa 9Ser Glu G
eet otg oPro Leu P
2
eca ctg aPro Leu T1
305
gag tte tGlu Phe E320
cag gaaGin Glu2
gtg gtgVal Val
gtg gtgVal Val
cag aaaGin Lys
385
agg ctgArg Leu400
gta 999*Val Gly
*age tgoSe8r Cys
ctg ace*Leu Thr
Lg tal S
tg teu T
99 Cly G
2
cc a'ro S90
ccO E'hrJ
cce~er
3ac%sp
ggtGly
CtcLeu370
cecer
ggrp
agin75
igter
~ctLhr
:caSer
tSer
gtgVal355
atgMet
tPhe
cacHi s260
CccPro
gggGly
gagGlu
aggArg
gggGiy340
at cI le
tcSei
2
ott gLeu A~
245
attIle G
cot CPro I
gtaVail
cacHis
gatAsp325
aagLys
geeAla
ogaArg
igefly
-ccro
-ga.rg
agoSer310
totScr
cagGin
gcaAl a
tacTyr
agaArgC
tea8cr
gtgVal295
990
Gly
cagGin
gtgVal
etcLeu
catHis375
'ct gag geela Giu Ala
~aaiu
tac['yr280
gatAsp
ateIle
gteVal
gaoAsp
t t9Leu360
C99Arc
etcLet
cc(Pr
eelPr
tet gtgSer Vai
250
gga getGly Ala265
aac tggAsn Trp
ggg gaoGly Asp
tac gteTyr Val
act gtgThr Val
330
eta gtgLeu Val345
ttC tgcPhe Cys
ego aagIArg Lys
ace aggThr Arg
agg ago)Arg Ser
410
tgat agto Asp Ser425
cgag ggc0 Giu Gly0
a cag actr Gin Thr
a gat cag
1013
1061
1109
1157
1205
1253
1301
1349
1397
1445
1493
1541
1589
1637
1685
9S
tr
gaoAsp
taoTyr
tat gag gag gag ctgTFyr Giu Giu Giu Leu
390
eat toe eat cac aegHis Ser His His Thr
405
etg aga gee gag 990
Leu Arg Ala Giu Gly420
tot gtg atg agt gaaSer Val Met Scr Giu
435
aog gtg agg gag ataThr Val Arg Glu Ile450
999 099 gee gag gag
Thr
gaoAsp
cacHis
gag eccGiu
gaaGlu455
gag
Pr44
acTh
gagaa etg etg tot eca ggo tot
36/105
00
Glu Leu Leu Ser Pro Gly Ser Gly Arg Ala Giu Glu Glu Giu Asp Gin460 465 470
gat gaa ggc atc aaa cag gcc atg aac cat ttt gtt cag gag aat gggAsp Giu Gly Ile Lys Gin Ala Met Asn His Phe Val Gin Glu Asn Giy475 480 485 490
acc cta cgg gcc aag ccc acg ggc aat ggc atcThr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile
495 500
tac atc aat ggg cggTyr Ile Asn Giy Arg
505
gga cac ctg gtc tga cccaggcctg cctcccttcc ctaggcctgg ctccttctgtGly His Leu Vail
510
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
gcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggcct tgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtggttactcttggacctgattatagacctcgcctttccttggggctggaatacctagaagggagaggcagatctaagaatattctgtt
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggct tgaaacatat tt tcacttttaattttttatttttctcctgggctcaccactgtgagatttatcc.gttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcttgcggattcatcgggagtgcatgtgttggaggggtgtggtgtatgttgtgtcatgtagcagtattatgtgcgggcacttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttgaaatgtttactgtgattgtgacctgagagctaaattgcatcctcctgttcagagttgaggttggatcactaggtttattttaaactcttctcgttccccagtacattttatcagacaaaac
1733
1781
1836
1896195620162076213621962256231623762436249625562616267627362796285629162976303630963156321632763336339634563464
<210> 21<211> 510<212> PRT<213> Homo sapiens
<400> 21Met Pro Leu Ser Leu Gly Ala Giu Met
1 5Leu Leu Leu Leu Leu Leu Ala
Giu Leu Gly Thr Ser Asp Val
Lys Leu Pro Cys Phe Tyr Arg55
Val Ala Trp Ala Arg Val Asp70
Trp10Thr
Gly Pro Giu Ala Trp Leu
Ser Phe25
Val Thr
Gly Asp
Gly Arg Cys
Val Val Leu
Ser Gly Giu
Giu Gly Ala
Pro Ala Gly
Gin Asp Ala
Val Gly Gin
Ala Gly Gin Glu Leu
37/105
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Giu Gly
cqf
00
00
Arg V
Leu L
Val S1
Val L145Glu G
Pro A
Ser I
His I
Val 5225His
Asn
Glu
Leu,
Leu305Phe
Glu
Va1
Val
Lye385Leu
Gly
Cys
Thr
Ser465Ala
al
eu
er30eu
Ily
la
Lrg
.eu
'er
lal
Leu
31)
Prc29(Th
Sei
As]
Gi
Le37
Ty
Hi
Le
Se
Th
GI
Glu GI
Arg A(115Thr P1
Val P:
Gin G
Pro S1
Ser P195Val P
His P
Ser P
Trp F2
Gin 1275Ser C
Thr
r Ser
p Ser
y Vai355
u Met0r Glu
s Ser
u Arg
:r Val435
lr Val00.y Arg
~t Asn
3n00sn
he
ro
ly
er80he
ro
ro
he
'is60'ro
ly
;lu
ArS
3Gl34(Ile
Sei
Gl
Hi
Al42Me
Ar
Al
Hi
Pro P:
Ala V
Pro A
Pro L1
Leu T165Val T
Lys H
Ser P
Gly I
Leu I245Ile
Pro
Val
His
Asp325
r Lye
a Ala
r Arg
u Glu
s His405
a Glu0t Ser
g Glu
a Glu
s Phe
ro P
al G
ia G1
eu P50hr L
hr TI
is S
rg E
ieu I!30la
3ily
Pro
A.rg
Ser310Ser
Gin
Ala
Tyr
Leu390Thr
Gly
Glu
Ile
Glu470Val
ro
in
ly35ro
eu
'rp
er
jer15aeu
ilu
krg
Ser
Val295Gly
Gir
Val
Lei
Hii37!Th
As
Hi
Gi
Gi45Gi
Gi
Pro A:1
Ala A120Ser P
Ser L
Ala A
Asp T1
Arg S200Met
Gin I
Ala
Glu
Tyr280Asp
Ile
Val
Asp
a Leu360
s Arg
r Leu
p Pro
a Pro
u Pro440
u Thr5u Glu
n Glu
rg05
sp
he
eu
.la
hr.85er
~sn
sp
er
31y265ksn
Gl
Tyi
Th
Lei34!Ph~
Ar
Th
Ar
As42Gi
Gi
As
As
Asn
Glu
Gin
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asp
Val
Va33(
a Va
e Cy
g Ly:
r Ar
g Se41
p Se5u Gi
n Th
p Gl
In Gl
Pro L
Gly G:
Ala A1
Pro G155Cys T
Val L
Ala V
Gin P2
Arg I235Arg C
Met I
Thr I
Thr
Cys I315
1 Asp0
1 Ser
s Leu
s Ala
g Glu395
r Gin0r Leu
y Arg
.r Glu
.n Asp475
.y Thr
lu
rg
ly
hr
ye
'al
1ro
.le
fly
ieu
rq
eu
His
Val
Al~
Le
Gl38As
Pr
Ly
Se
Le46Gi
Le
Asp G1
Tyr G125Leu A
Pro A
Ala G
Gly T1
Thr S205Leu T
Thr H
Leu G
Lys C
Leu I285Gly I
Val
Leu
i Ser
i Vai365
n Gin0n Ser
o Glu
Asp
r Tyr445
u Leu0u Gly
u Arg
Ly
lu
rg
la
lu
hr
er
hr
[is
flu
.ys
ksp
?he
Ser
Asp
Val
Val
Mel
I1
GlI
As43Se
Se
I
Al
Ser V
Cys A
Leu A
Leu G1
Gly S175Thr S
Glu P
Cys N
Ile I
Asp C255Leu
Gly
Pro
Asn
Pro335Val
Val
t Thr
e Arg
a Ser415
n Ser0r Thr
r Pro
e Lys
a Lye495
al
rg
rg
lu
er
er
,he
Pal
ieu
31n
3er
Pro
Pro
Glu320Gin
Val
Va1
Gin
Arg400Val
Ser
Leu
Giy
Gin480Pro
485
Thr Giy Asn Ile Tyr Ile Asn Arg Gly His Leu Vai510
<210> 22<211> 3464<212> DNA<213> Homo sapiens
38/105
00<220><221> CDS<222> (264) (1796)
<400> 22ggccgtcgtt
acggcttctttcccctagtgcagttccttagctgggcagt
gttggccaca. gcgtgggaag cagctctggg ggagctcgga gctcccgatc
gggggtagct acggctgggt gtgtagaacg gggccggggc tggggctggggagacccaag tgcgagaggc aagaactctg cagcttcctg ccttctgggtttcaagtctg cagccggctc ccagggagat ctcggtggaa cttcagaaacctgcctttca acc atg ccc ctg tcc ctg gga 9CC gag atg tgg
Met Pro Leu Ser Leu Gly Ala Gin Met Trp
120180240293
.gg9 cct gag gccGly Pro Gin Ala
ctg ctg ctg ctgLen Leui Leu Len
ctg ctg gca tcaLeu Len Ala Ser
ttt acaPhe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
gcg ggt gag ctgAla Gly Gin Len
acc tca gac gtgThr Ser Asp Val
gta act gtgVal Thr Val
ggg gac tccGly Asp Ser
341
389
437cag gac gca aaaGin Asp Ala Lys
ctg
Len50
CCC tgc ttc tacPro Cys Phe Tyr
cgaArg
ggc gagGly Gin
caa gtg ggg caaGin Val Gly Gin
gca tgg gct cggAla Trp Ala Arg
gac gCg ggC gaaAsp Ala Gly Glu
9gCGly
gCC cag gaa ctaAla Gin Glu Leu
Cta Ctg cac tCCLen Leu Hius Ser
tac ggg cztt cat
Tyr Gly Len His
agc ccg gct tac gag ggc c9c gtg gagSer Pro Ala Tyr Gin Gly Arg Val Gin
c agGin100
CCg CCg CCC cca
Pro Pro Pro Procgc aacArg Asn105
CCC ctg gacPro Len Asp
ggC gag taCGly Gln Tyr
125
tCa gtg CtC ctgSer Val Len Len
aac gca gtg cagAsn Ala Val Gin
gCg gat gagAla Asp Gin120
agc ttc cagSer Phe Gin
gag tgc cgg gtCGin Cys Arg Val
agcSer130
acc ttc CCC 9CC
Thr Phe Pro Ala99CGly135
gcg CggAla Arg
140
ctg cgg ctc cgaLen Arg Len Arg
atg gtg cct CCCMet Val Pro Pro
ccc tca ctg aatPro Ser Len Asn
ct
Pro155
ggt cca gca ctaGly Pro Ala Leu
gaaGin160
gag ggc cag ggcGin Gly Gin Gly
acc ctg gca gCCThr Leu Ala Ala
tcc
Ser170
725
773
821tgC aca gct gagCys Thr Ala Giu
99cGly175
agc cca 9CC CCCSer Pro Ala Pro
gtg aCC tgg gac
Val Thr Trp, Asp
acg gagThr Giu185
gtC aaa ggc aca acg tCC agc cgt tCC ttC aag cac tCC CgC tct gct
Val Lys Gly Thr Thr Ser Ser Arg Ser Phe Lys His Ser Arg Ser Ala
39/ 105
9CC gtc acc tca
Ala Val Thr Ser205
gag ttc cacGlu Phe His
ttgLeu210
gtg cct agc cgc agc atg aat gggVal Pro Ser Arg Ser Met Asn Gly
215
cag ccaGin Pro
220
ctg act tgt gtg gtg tcc cat cct ggcLeu Thr Cys Val Val Ser His Pro Gly
ctg ctc cag gac caaLeu Leu Gin Asp Gin230
917
965
1013aggArg235
atc acc cac atcIle Thr His Ile
ctcLeu240
cac gtg tcc ttc ctt gct gag gcc tctHis Val Ser Phe Leu Ala Giu Ala Ser
245
agg ggc ctt gaaArg Gly Leu Giu
gacAsp255
caa aat ctg tggGin Aen Leu Trp,
cacHis260
att ggc aga gaaIle Gly Arg Giu
gga gctGly Ala265
atg ctc aagMet Leu Lys
aca cgg ctgThr Arg Leu
285
tgcCys270
ctg agt gaa 999Leu Ser Giu Giy
ccc cct ccc tcaPro Pro Pro Ser
tac aac tggTyr Asn Trp280
gat ggg gacAsp Gly Asp
1061
1109
1157gat ggg cct ctgAsp Gly Pro Leu
cccPro290
agt ggg gta cgaSer Gly Val Arg
act ttgThr Leu
300
ggc ttt ccc ccaGly Phe Pro Pro
ctgLeu305
acc act gag cacThr Thr Giu His
ggc atc tac gtcGly Ile Tyr Val
tgcCys315
cat gtc agc aatHis Val Ser Asn
ttc tcc tca aggPhe Ser Ser Arg
tct cag gtc actSer Gin Val Thr
1205
1253
1301gat gtt ctt gacAsp Vai Leu Asp
cag gaa gac tctGin Giu Asp Ser
999Gly340
aag cag gtg gacLys Gin Val Asp
cta gtgLeu Val345
tca gcc tcgSer Ala Ser
ctt ctg gtgLeu Leu Vai
365
gtg gtg gtg ggtVal Val Val Gly
atc gCC gca ctcIle Ala Ala Leu
ttg ttc tgcLeu Phe Cys360
cgg cyc aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
atg tcc cga tacMet Ser Arg Tyr
9CC cagAla Gin
380
cag atg acc cagGin Met Thr Gin
tat gag gag gagTyr Giu Glu Giu
ctgLeu390
acc ctg acc aggThr Leu Thr Arg
1445
gagGlu395
aac tcc atc cggAsn Ser Ile Arg
ctg cat tcc cat cac acg gac ccc agg agcLeu His Ser His His Thr Asp Pro Arg Ser
405 410
1493
cag ccg gag gag agt gta ggg ctg agaGin Pro Giu Giu Ser Val Gly Leu Arg
415
9CC
Ala420
gag ggc cac cctGiu Gly His Pro
gat agtAsp Ser425
1541
1589ctc aag gac aac agt agc tgC tct gtg atg agt gaa gag ccc gag ggcLeu Lys Asp Asn Ser Ser Cys Ser Val Met Ser Giu Glu Pro Giu Gly
40/105
430
cgc agt tacAry Ser Tyr
445
tcc acg ctg accSer Thr Leu Thr
acgThr450
gtg agg gag ataVal Arg Giu Ile
aca cag actThr Gin Thr
1637
gaa ctgGiu Leu
460
ctg tct cca ggcLeu Ser Pro Gly
t ctSer465
ggg cgg gcc gagGly Arg Ala Giu
gagGiu470
gag gaa gat cagGlu Glu Asp Gin
1685
1733gaa ggc atc aaaGlu Gly Ile Lys
cagGin480
gcc atg aac catAla Met Asn His
tttPhe485
gtt cag gag aatVal Gin Giu Asn
acc cta cgg gccThr Leu Arg Ala
ccc acg ggc aatPro Thr Gly Asn
ggcGly500
atc tac atc aatIle Tyr Ile Asn
ggg cggGiy Arg505
gga cac ctgGiy His Leu
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgccatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggt agagt ctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
gtc tga ccVal510
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaattagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
:caggcctg cctcccttcc ctaggcctgg ctccttctgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattttgctcaggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
gcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtggttactcttggacctgattatagacctcgcctttccttggggctggaatacctagaagggagaggcqgatctaagaatattctgtt
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggcttgaaacatattttcacttttaattttttatttttctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcttgcggattcatcgggagtgcatgtgttggaggggtgtggtgtatgttgtgtcatgtagcagtattatgtgcgggcacttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttgaaatgtttactgtgattgtgacctgagagctaaattgcatcctcctgttcagagttgaggttggatcactaggtttattttaaactcttctcgttccccagtacattttatcagacaaaac
1781
1836
1896195620162076213621962256231623762436249625562616267627362796285629162976303630963156321632763336339634563464
<210> 23<211> 510<212> PRT<213> Homo sapiens
<400> 23Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10 Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
41/105
Gin Asp AlaGlu Leu Glu Thr Ser Asp Val Val Thr Val Val Len Gly
00
00
Lys
Va1
Leu
Arg
Len
Val
Va1145Glu
Pro
Ser
His
Val225His
Asn
Glu
Leu
Leu305Phe
Gl
Val
Va
Ly38!Let
G1'
Cy:
Th
Se46Al
Leu P
Ala T
Len H
Val G
Leu A1
Ser I130Met
Gly C
Ala I
Arg
Leu210Ser
Val
Len
Gly
Pro290Thr
ser
1 Asp
Gly
L Leu370
s Tyr
u His
y Leu
s Ser
r Thr450
r Gly5a Met
ro
rp
.is
lu
~rg.15'hr
ral
ln
!ro
3er
Jal
His
Ser
rrp
Gin275Ser
Thr
Ser
Sei
Val
Met
Gli
Se
Arc
Va43Va
Ar
As
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Prc
Gl
Gl1L
Arc
GI)34(L
Se
Gi
r Hi
g Al.42
1 Me51 Ar
g Al
n Hi
Phe T
Arg V7
Lys
Pro P
Ala V
Pro A
Pro L2
Leu 165Vai
Lys I
Ser 2
Gly
Leu245Ile
Pro
Vai
His
Asp325Lys
e Ala
r Arg
u Glu
s His405
a Glu0t Ser
g Glu
a Glu
s Phe485
yr A5
al A0lyr G
'ro P
ral G
la C
reu I50hr I
[hr
Uss
krg
Leu230Ala
Giy.
Pro
Arg
Ser310Ser
Gin
Ala
Tyr
Len390Thr
Gly
Glu
Ile
Glu470Val
rg5sp
ly
'ro
;In
ily.35,ro
ieu
Crp
Ser
Ser215Leu
G1u
Arg
Ser
Val295Gl)
Gli
Va
Let
Hir37!Th:
As]
Hi
G1
G145Gi
G1
Gly A
Ala G
Len H
Pro A1
Ala A120Ser P
Ser I
Ala
Asp
Arg200Met I
*Gin 2
Ala
Glu
Tyr280Asp
r Ile
i Val
1 Asp
.i Leu360
s Arg
r Len
p Pro
s Pro
u Pro440
n Thr5u Glu
n Glu
sp
ly
.is
*rg05~sp
,he
leu
~la
'hrL853er
ksn
ksp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arc
Thi
Ar
Asi42!Gli
Gl
As]
As
Ser
Glu
Val90Asn
Glu
Gin
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asp
Val
Val330Val
CyE
Ly,
.Arc
SSe
41(Sei
u Gl
n Th:
p Gi:
n G149
y Ar
Gly Glu
Gly Ala75Ser Pro
Pro Len
Gly Glu
Ala Arg140
Pro Gly155Cys Thr
Val Lys
Ala Val
Gin Pro220
Arg Ile235Arg Gl
Met Lei
Thr Ar
Thr Lei
Cys Hi315Asp Va
Ser Al
Len Le
Ala Gi138
Glu As395
c Gin Pr
r Leu Ly
y Arg Se
r Glu Le46
n Asp GI475
y Thr Le
0g Gly Hi
Gin
Gin
r
1
3
1
3
c
rCr
c
r
1
Ala T
Asp C1
Tyr 2125Leu I
Pro 1
Ala
Gly
Thr205Len
Thr
Leu
Lys
Leu285Gly
Val
Len
Ser
Val365
i Gin
i Ser
:>Glu
s Asp
r Tyr445
u Len
0u Gly
u Arg
s Len
yr
;ly
3lu
rg
kla
3lu
rhr190Ser
rhr
His
Glu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
lie
GIL
Asi43(Se
Sei
Il
Al
Va
Gly G
Len A8
Glu G
Ser V
Cys P
Leu P
Leu C2
Gly175Thr
Glu I
cys
Ile
Asp255Len
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
1 Ser415
i Ser
Thr
Pro
Lys
Lys495
1
In
.la0ly
ral
~rg
irg
flu
jer
er
?he
lal
LIeu240Gln
Ser
Pro
Pro
Glu320Gin
Va1
Val
Gin
Arg400Val
Ser
Len
Gly
Gin480Pro
Thr Gly Asn Gly Ile Tyr lie Asn Gi:
42/105
00
<210> 24<211> 3464<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1796)
<400> 24ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagt
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttca
gcgtgggaag cagctctggg ggagctcgga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgcgagaggc aagaactctg cagcttcctg ccttctgggtcagccggctc ccagggagat ctcggtggaa ctztcagaaacacc atg ccc ctg tcc ctg gga gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Glu Met Trp
ggg cct gag gccGly Pro Glu Ala
tggTrp
ctg ctg ctg ctgLeu Leu Leu Leu
ctg ctg gca tcaLeu Leu Ala Ser
ttt acaPhe Thr
ggc cgg tgcGly Arg Cys
gtg ctg ggcVal Leu Gly
gcg ggt gag ctgAla Gly Glu Leu
gagGlu
acc tca gac gtgThr Ser Asp Val
gta act gtgVal Thr Val.
ggg gac tccGly Asp Ser
389
437cag gac gca aaaGin Asp Ala Lys
ccc tgc ttc tacPro Cys Phe Tyr
ggc gagGly Glu
caa gtg ggg caaGln Val Gly Gin
gca tgg gct cggAla Trp Ala Arg
gac gcg ggc gaaAsp Ala Gly Glu
ggcGly
gcc cag gaa ctaAla Gin Glu Leu
gcgAl a
cta ctg cac tccLeu Leu His Ser
tac ggg ctt catTyr Gly Leu His
agc ccg gct tacSer Pro Ala Tyr
gagGlu
ggc cgc gtg gagGly Arg Val Glu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggcGly110
tca gtg ctc ctgSer Val Leu Leu
aac gca gtg cagAsn Ala Val Gin
gcg gat gagAla Asp Glu120
agc ttc cagSer Phe Gin
629
677ggc gag tac gagGly Glu Tyr Glu
125
tgc cgg gtcCys Arg Val.
acc ttc ccc gccThr Phe Pro Ala
ggcGly135
gcg cgg ctg cgg ctc cga gtgAla Arg Leu Arg Leu Arg Val
140 145
cct ggt cca gca cta gaa gagPro Gly Prc Ala Leu Glu Glu155 160
ctg gtg cct cccLeu Val Pro Pro
ctg ccc tca ctg aatLeu Pro Ser Leu Asn150
acc ctg gca gcc tccThr Leu Ala Ala Ser
ggc cag ggcGly Gin Gly
43/105
00
tgc aca gct gagCys Thr Ala Giu
gtc aaa ggc acaVal Lys Gly Thr
190
gcc gtc acc t .caAla Val Thr Ser
205
ggc agc ccaGly Ser Pro175
gcc ccc agc gtg acc tgg gac acg gagAla Pro Ser Val Thr Trp Asp Thr Glu
acg tcc agc cgt tcc ttc aag cac tccThr Ser Ser Arg Ser Phe Lys His Ser
cgc tct gctAry Ser Ala200
atg aat gggMet Asn Gly
gag ttc cacGlu Phe His
ttgLeu210
gtg cct agc cgcVal Pro Ser Arg
cag ccaGin Pro
220
ctg act tgt gtgLeu Thr Cys Val
tcc cat cct ggcSer His Pro Gly
ctgLeu230
ctc cag gac caaLeu Gin Asp Gin
aggArg235
atc acc cac atcIle Thr His Ile
cac gtg tcc ttcHis Val Ser Phe
cttLeu245
gct gag gcc tctAla Glu Ala Ser
965
1013
1061agg ggc ctt gaaArg Gly Leu Glu
caa aat ctg tggGin Asn Leu Trp
cacHis260
att ggc aga gaaIle Gly Arg Glu
gga gctGly Ala265
atg ctc aagMet Leu Lys
aca cgg ctgThr Arg Leu
285
ctg agt gaa gggLeu Ser Giu Gly
cagGin275
ccc cct ccc tcaPro Pro Pro Ser
tac aac tggTyr Asn Trp,280
gat ggg gacAsp Gly Asp
1109
1157gat ggg cct ctgAsp Gly Pro Leu
cccPro290
agt ggg gta cgaSer Gly Val Arg
act ttgThr Leu
300
ggc ttt ccc ccaGly Phe Pro Pro
acc act gag cacThr Thr Giu His
ggc atc tac gtcGly Ile Tyr Val
cat gtc agc aatHis Val Ser Asn
gagGiu320
ttc tcc tca aggPhe Ser Ser Arg
tct cag gtc actSer Gin Val Thr
1205
1253
1301gat gtt ctt gacAsp Val Leu Asp
cag gaa gac tctGin Giu Asp Ser
gggGiy340
aag cag gtg gacLys Gin Val Asp
cta gtgLeu Val345
tca gcc tcgSer Ala Ser
ctt ctg gtgLeu Leu Val
365
gtg gtg gtg ggtVal Val Val Gly
atc gcc gca ctcIle Ala Ala Leu
ttg ttc tgcLeu Phe Cys360
cgg cgc aagArg Arg Lys
1349
1397gtg gtg gtg gtgVal Val Val Val
atg tcc cga tacMet Ser Arg Tyr
gcc cagAla Gin
380
gag aacG1u Asn395
cag atg acc cag aaaGin Met Thr Gin Lys
385
tat gag gag gag ctg acc ctg acc aggTyr Giu Giu Giu Leu Thr Leu Thr Arg
390
1445
tcc atc cggSer Ile Arg
agg ctgArg Leu400
cat tcc catHis Ser His
acg gac ccc aggThr Asp pro Arg
agcS er410
1493
44/105
00
00
cag ccg gag gag agt gta ggg ctg agaGin Pro Glu Glu Ser Val Gly Leu Arg
gccAla420
gag ggc cac cct gat agtGiu Gly His Pro Asp Ser
ctc aag gacLeu Lys Asp
tgc agt tacCys Ser Tyr
445
gaa ctg ctgGiu Leu Leu
460
aacAsn430
agt agc tgc tctSer Ser Cys Ser
gtgVal.435
atg agt gaa gagMet Ser Glu Giu
ccc gag ggcPro Glu Gly440
aca cag actThr Gin Thr
tcc acg ctg accSer Thr Leu Thr
gtg agg gag ataVal Arg Glu Ile
gaaGiu455
1541
1589
1637
1685
1733
1781.
tct cca ggcSer Pro Gly
ggg cgg gcc gagGly Arg Ala Glu
gagGlu470
gag gaa gat cagGlu Glu Asp Gin
gatAsp475
gaa ggc atc aaaGiu Gly Ile Lys
gcc atg aac catAla Met Asn His
gtt cag gag aatVal Gin Glu Asn
gggGly490
acc cta cgg gccThr Leu Arg Ala
aagLys495
ccc acg ggc aatPro Thr Gly Asn
atc tac atc aatIle Tyr Ile Asn
ggg CggGly Arg505
gga cac ctgGly His Leu
tga cccaggcctg cctcccttcc ctaggcctgg ctccttctgt 1836
tgacatgggaagatgctcccgggctccaccgcctgtgtgaactgtgtccggccacgggatggctgtgtgtatgatgcagatagctggagcatgggggcaaagccctctgcCatgcgccggttttttcttgagagatggagtcctgcctcaatcctttacgactgggattgaaggggctacggtagagtctcaccattgttatagtggtgtgaggtgaaggattcaaggcttagctggccctagtctgaaaccagcctagggtaaatatgtttgaaaaa
<210> <211> 510
gattttagctcatcccactgaattgagtctgtgttgactgtggtgtgtatttgagtggttgacctctgccggttggaggatggaatctgcgtgtgaagcacctctggtgggagcttcttgccctttccattctcactatggcctccctagaagagaaaaacttaaagtgattccaaggcagaaat tagggtgtgataccttggggagagaaggtgctgggcttctggatgacccagatactctgctggatacttcgaatggcatatttgt
catcttggggactgcttgacctcccaccatactgtgtgtgtatgctgtcagcgtgggcaatgaaaaagcagagaggtggactccggtgtggccagtccctcctctgggcccaggaatacttagttgtattt tgc tc aggctagctgggacaaaaattaaaggcccctccatcttcatgcaatgtgagccttagggaattggagagcagtgggtgagaatgtttctctgggactcagccagttctggcctatggagcctgaacataaaatg
gcctccttaactttacctccgcatgcaggttgtggaggggtatcagagtccactgtcaggggtattttctgactgtggctagggaacctggggtcagccatgctgcatgtgctccgaatcttttatttattggccttgaatttaagtgtagaaagcctttacaccaggggggcagcccctcgtggttactCt tggac ctgattatagacctcgcctttccttggggctggaatacctagaagggagaggcagatctaagaatattctgtt
acacccccataacccttctgcactgtgtgttgactgtccgaagtgaactggtttggcgtgcagaccccagcagacccaggtctcctaccagaggct tgaaacatattttcacttttaattttttatttttctcctgggctcaccactgtgagatttatccgttaattccttgggagggcagagtaaggtagtgacaaggggagagagtagccctgggtttagttcaatgatttagtaccctcccatcctttcctaacatgtttaaataaa
ttcttgcggattcatcgggagtgcatgtgttggaggggtgtggtgtatgttgtgtcatgtagcagtattatgtgcgggcacttcggagccctgttacagatgtaaatatatttttcttttatttttttttcaagcaatcccctgctttgaaatgtttactgtgattgtgacctgagagctaaattgcatcctcctgttcagagttgaggttggatcactaggtttattttaaactcttctcgttccccagtacattttatcag~icaaaac
1896195620162076213621962256231623762436249625562616267627362796285629162976303630963156321632763336339634563464
105
<212> PRT<213> Homo sapiens
00<400>
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
C 1 5 10 Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25 Glu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin
1 50 55 Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala
70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly
90
Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg
00 115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
130 135 140
S Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205
His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255
Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335
Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
385 390 395 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430
Cys Ser Val Met Ser Glu Glu Pro Glu Gly Cys Ser Tyr Ser Thr Leu
435 440 445
46/105
Thr Thr Val Arg Glu Ile450
Ser Gly Arg Ala Glu Giu
Giu455Glu
Thr Gin Thr Giu Leu460Giu
Leu Ser Pro Gly
00 Giu Asp Gin Gly Ile Lys465Ala Met Asn
Thr Gly Asn
470His Phe Val
485Gly Ile Tyr500
Gin Giu Asn
Ile Asn Giy505
Gly490Arg
Leu Arg Ala
Gly His Leu
<210> 26;-211> 3467<212> DNA<213> Homo sapiens
<220><221> CDS<222> (264) (1799)
<400> 26ggccgtcgttacggc ttot ttcccctagtgcagttccttagotgggcagt
gttggccacagggggtagotgagacccaagttcaagtctgctgcctttca
gcgtgggaag oagctctggg ggagctogga gctcccgatcacggctgggt gtgtagaacg gggccggggc tggggctgggtgogagaggo aagaactctg oagcttcctg ccttctgggtoagccggctc ocagggagat ctcggtggaa cttcagaaacacc atg coo otg toc ctg gga. gcc gag atg tgg
Met Pro Leu Ser Leu Gly Ala Giu Met Trp
ggg cct gag goc tgg ctg ctg otg ctgGly Pro Glu Ala Trp, Leu Leu Leu Leu
otg ctg gca tcaLeu Leu Ala Ser
ttt acaPhe Thr
ggc ogg tgcGly Arg Cys
gcg ggt gag ctgAla Gly Giu Leu
acc tca gac gtgThr Ser Asp Val
gta act gtgVal Thr Val
ggg gao tcoGly Asp Ser
gtg otg ggc cag gao gca aaaVal Leu Gly Gin Asp Ala Lys
ccc tgc ttc taoPro Cys Phe Tyr
cgaArg
ggc gagGiy Giu
caa gtg ggg caaGin Val Gly Gin
gca tgg got cggAla Trp Ala Arg
gao gog ggc gaaAsp Ala Gly Giu
437
485
533
581
ggoGly
gcc cag gaa ctaAla Gin Giu Leu
cta ctg cac tooLeu Leu His Ser
tao ggg ott catTyr Gly Leu His
agc ccg gct tacSer Pro Ala Tyr
gagGiu
ggc cgc gtg gagGly Arg Val Giu
ccg ccg ccc ccaPro Pro Pro Pro
cgc aacArg Asn105
ccc ctg gacPro Leu Asp
ggoGly110
toa gtg ctc ctgSer Val Leu Leu
aac gca gtgAsn Ala Val
cag gcg gat gagGin Ala Asp Glu
120
ggc agc ttc cagGly Ser Phe Gin135
ggc gag tao gagGly Glu Tyr Giu
125
tgo cgg gtcCys Arg Val
acc ttc ccc gcThr Phe Pro Ala
47/105
gog cgg ctg cgg ctc cga gtg ctg gtg cot ccc ctg ccc tca ctg aat
Ala Arg Leu Arg Leu Arg Val. Leu Val Pro Pro Leu Pro Ser Leu Asn
140 145 150
cct ggt ccaPro Gly Pro
goa cta gaaAla Leu Giu
gag 990 cag ggcGiu Gly Gin Gly
ctgLeu165
aoc ctg goa 9CCThr Leu Ala Ala
tooSer170
725
773
821tgc aca got gagCys Thr Ala Glu
ago cca 9CC CCCSer Pro Ala Pro
agcSer180
gtg acc tgg gacVal Thr Trp Asp
acg gagThr Glu185
gtc aaa ggcVal. Lys Gly
9CC gtc accAla Val Thr
205
aog toc ago ogtThr Ser Ser Arg
tooSer195
ttc aag cac tooPhe Lys His Ser
ogc tot gotArg Ser Ala200
atg aat gggMet Asn Gly
toa gag tto oaoSer Giu Phe His
ttgLeu210
gtg cot ago 090Val Pro Ser Arg
agoSer215
cag ooaGin Pro
220
otg act tgt gtgLeu Thr Cys Val
gtgVal225
too oat oct ggoSer His Pro Gly
oto cag gao oaaLeu Gin Asp Gin
869
917
965
1013
1061
aggArg235
ato aoo oac atoIlie Thr His Ile
otoLeu240
cac gtg too ttoHis Val Ser Phe
got gag goo tot.Ala Giu Ala Ser
agg ggc ott gaaArg Gly Leu Giu
gacAsp255
oaa aat otg tggGin Asn Leu Trp
att 990 aga gaaIle Gly Arg Giu
gga gotGly Ala265
atg ctc aagMet Leu Lys
aoa 099 otgThr Arg Leu
285
otg agt gaa gggLeu Ser Glu Gly
cagGin2'75
000 oct 000 toaPro Pro Pro Ser
tao aao tggTyr Asn Trp280
gat ggg gaoAsp Gly Asp
1109
1157gat ggg oct ctgAsp Gly Pro Leu
000
Pro290
agt 999 gta ogaSer Gly Val Arg
gtgVal295
act ttgThr Leu
300
990 ttt coo ooaGly Phe Pro Pro
otgLeu305
acc act gag cacThr Thr Glu His
990 atc tac gtoGly Ie Tyr Val
tgoCys315
oat gtc ago aatHis Val Ser Asn
gagGiu320
ttc too toa aggPhe Ser Ser Arg
tct cag gtc actSer Gin Val Thr
1205
1253
1301gat gtt ott goaAsp Val Leu Ala
000 cag gaa gaoPro Gin Glu Asp
totSer340
999 aag cag gtgGiy Lys Gin Val
gao otaAsp Leu345
gtg toa 900Val. Ser Ala
gtg gtg gtg gtgVal Val Val Val
gtg gtg gtg gtgVal Val Val Val
370
ggtGly355
gtg ato 900
Val. Ile Alagca ctO ttg ttcAla Leu Leu Phe
360
tao oat 099 090Tyr His Arg Arg375
1349
1397tgo ott otg gtgCys Leu Leu Val
365
cto atg too ogaLeu Met Ser Arg
48/105
00
00
aag gceLys Ala
380
cag cag atg aceGin Gin Met Thr
aaa tat gag gagLys Tyr Giu Giu
gagGiu390
ctg ace ctg accLeu Thr Leu Thr
aggArg395
gag aac tcc ateGlu Asn Se Ile
agg etg cat teeArg Leu His Ser
catHis405
eae aeg gae cHis Thr Asp Pro
age eag ecg gagSer Gin Pro Giu
agt gta ggg etgSet Vai Giy Leu
agaArg420
gee gag gge cacAla Giu Gly His
eeL gatPro Asp425
1445
1493
1541
1589
1637
1685
agt etc aagSer Leu Lys
gge ege agtGly Arg Set
445
gacAsp430
aae agt age tgeAsn Ser Set Cys
gtg atg agt gaa gag ccc gagVal Met Set Giu Glu Pro Giu
tac tee acg etgTyr Set Thr Leu
aeg gtg agg gagThr Val Arg Giu
ataIle455
gaa aca eagGiu Thr Gin
act gaaTht Giu
460
etg ctg tet eeaLeu Leu Set Pro
Let ggg egg geeSet Gly Arg Ala
gagGiu470
gag gag gaa gatGiu Glu Giu Asp
cagGin475
gat gaa ggc ateAsp Giu Gly Ile
eag gee atg aac eat ttt gtt eag gagGin Ala Met Asn His Phe Val Gin Giu
485
1733
ggg ace eta eggGly Thr Leu Arg
aag eec aeg ggeLys Pro Thr Gly
aatAsn500
gge ate tae ateGly Ie Tyr Ile
aat gggAsn Giy505
1781
egg gga caeArg Gly His
etg gte LgaLeu Val.510
cecaggeetg ceteeettce etaggcctgg 1829
etccttetgtttettgeggattcategggagtgeatgtgttggaggggtgtggtgtatgttgtgteatgtageagtattatgtgegggcaetteggageectgttacagatgtaaatatatttttcttttattttttttteaagcaateceetgctttgaaatgtttaetgtgattgtgaeectgagagetaaattgcatccteetgttcagagttgaggttggateaetaggtttatttt
tgacatgggaagatgetecegggetccacegcetgtgtgaaetgtgtceggeeaegggatggetgtgtgtatgatgcagatagetggagcatgggggeaaagcetetgccatgcgeeggttttttettgagagatggagtcetgectcaateetttacgactgggattgaaggggetaeggtagagteteaceattgttatagtggtgtgaggtgaaggatteaaggettagctggccc
gattttagcteateeeactgaattgagtetgtgttgaetgtggtgtgtatt tgagtggt tgacctetgcggttggaggatggaatctgegtgtgaagcacctctggtgggagettettgcetttecattctcaetatggcetcectagaagagaaaaacttaaagtgatteeaaggeagaaattagggtgtgataccttggggagagaaggtge tgggcttetggatgaceeagatae
catcttggggaetgcttgacetceaceatactgtgtgtgtatgctgteagegtgggeaatgaaaaagcagagaggtggaetccggtgtggecagtectcetctgggeceaggaatacttagttgtattttgctcaggetagctgggacaaaaattaaaggeeeeteeatctteatgeaatgtgageettagggaattggagagcagtgggtgagaatgtttetctgggaetcagceag
gcetecttaa acacceecat 1889ctttaeetcegcatgcaggttgtggaggggtatcagagteeaetgtcaggggtattttctgaetgtggetagggaaeetggggtcagccatgetgcatgtgetccgaatettttatttattggcettgaatttaagtgtagaaageettta cace aggggggeagcccetegtggttaetcttggacctgattatagacetegcetttecttggggctggaataectaga
aaccettctgeaetgtgtgttgactgteegaagtgaaetggtttggegtgeagaccecagcagaeeeaggtcteetaccagaggcttgaaacatattttcaettttaattttttatttttctectgggcteaceaetgtgagat ttate egttaattcettgggagggeagagtaaggtagtga caaggggagagagtagcctgggtttagtteaatgatttagtacee
19492009206921292189224923092369242924892549260926692729278928492909296930293089314932093269
49/105
00
aaactcttct tagtctgaaa tctgctggat ttctggccta agggagaggc tcccatcctt 3329
cgttccccag ccagcctagg acttcgaatg tggagcctga agatctaaga tcctaacatg 3389
tacattttat gtaaatatgt gcatatttgt acataaaatg atattctgtt tttaaataaa 3449
cagacaaaac ttgaaaaa 3467
<210> 27<211> 511<212> PRT<213> Homo sapiens
<400> 27Met1
Leu
Glu
Lys
Val
Leu
Arg
Leu
Val
Val145Glu
Pro
Ser
His
Val225His
Asr
GIv
Let
Let
Ph
Gli
Va
Va
Pro L
Leu L
Leu G3
Leu I
Ala 9)
Leu I
Val
Leu
Ser130Leu
Gly
Ala
Arg
Leu210Ser
Val
Leu
i Gly
pro290
i Thr
Ser
x Glu
1 Val
1 Val
eu
.eu
;lu55,ro
rrp
Us
flu
%rg115rhr
Val
Gln
Pro
Ser195Val
His
Ser
Trp
Glr275Sei
Th3
Se
AsE
GlI
Lel
Cer Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
Leu
Thr
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Prc
Prc
Phe
His260Prc
*GI~
*G1i
Ar
Se34'
r Va5u Me'
5Leu I
Ser I
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
r Val
i His
3 Asp325
r Gly01 Ile
t Ser
~eu
~sp
ryr
lal70ryr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Lys
Ala
Arc
Ala S
Val 4
Arg C55Asp I
Gly I
Pro I
Gin I
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Val295Gly
Gin
Gin
Ala
Tyr375
er
ral00fly
la
jeu
?ro
k1a1203er
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Val
Val
Let36CHis
2'1
10he Thr5V'hr Val
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Asp345
1 Leu
Arg
,er
flu
lal30ksn
31u
3Gl
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asy
Val
Va33(Let
Ph
Ar
Gly I
Val
Gly
Gly75Ser
Pro
Gly
Ala
Pro155Cys
Val
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315
L Asp0.i Val
e Cys
g Lys
krg
Eeu
Glu
Ala
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Sei
Let
Al
Cys 1
Gly C
Gin
Gin C
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Ala
i Leu365
x Gin
)ro00fIn
Tal
.lu
ryr
Gly110Glu
Prg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Sei
Alz
Se
Va
Gb
Ala C
Asp I
Gly C
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
i Asp335Val
i Val
n Met
fly
la
'In
kla
Gly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Pro
Val
Val
Thr
370 380
Gin Lys Tyr Giu Giu Glu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg
50/105
385Arg
390His
395SerLeu His Ser His Thr Asp Pro Gin Pro Glu
400Giu Ser415
00
00
405AlaVal Gly Leu
Ser Cys Ser
Arg420Val
Glu Gly His Ser Leu Lys
Met Ser Giu Giu440Giu
Glu Gay Arg
Asp Asn Ser430Tyr Ser Thr
Leu Ser ProLeu Thr450
Gly Ser
Val Arg Giu Thr Gin Thr Giu460AspGly Arg Ala
465Gin
Giu470Phe
Glu Giu Asp Gin475Gly
Giu Gly Ile
Ala Met Asn His485Gly
Val Gin Giu Thr Leu Arg Al a495ValPro Thr Gly Ile Tyr Ile Arg Gly His Leu
510
<210> 28<211> 1669<212> DNA<213> Homo sapiens
<220><221> CDS<222> (708) (1121)
<400> 28gtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctc
ggcctgcctcttgggqgcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagoaggtaggtggagactggtgtgaggggt ccc tggg ttgggcctgct
cc ttccc tagccttaaacacacctccaacogcaggt cactgaggggtgacagagtcaagtgtcagggtttttttctcaga.gtggctcaga.aacctgtctccagccagagggcatgtacat
gcctggct 00cccoatttotcttctgttca.gtgtgtgtgctgtccgtggagaactgtggt.ggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgta
ttctgttgactgoggaagattcgggagggcatgtgtgoctggggtgactggtatgtgcca.tcatgtggctgtattaatgacgggcatagcggagccatggtacagaagcc
atgggagattgctcoooatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagotggagggcaagtgt.Ctctgccctc
120180240300360420480540600660716aatatac atg cgc cgg
Met Arg ArgI
gag cttGiu Leu
ott gca gga. ata.Leu Ala Gly Ile
ctgLeu10
otc cga. atc act ttt aat ttt ttt cttLeu Arg Ile Thr Phe Asn Phe Phe Leu
ttt ttc ttg CccPhe Phe Leu Pro
cca. tta gtt gtaPro Leu Val Val Phe Ile Tyr Phe Tyr
Phe Tyr Phe Phegag atg gag tctGiu Met Giu Ser
tat gtt got cagTyr Val Ala Gin
gct. ggcAla Gly
ott gaa ctcLeu Giu Leu
ctgLeu
ggc tca. agc aatGly Ser Ser Asn
oct oCc tca. gacPro Ala Ser Asp
tco ota. gta.Ser Leu Val
got ggg act tta. agt gta cac cac tgt gcc tgc ttt gaa tcc ttt acgAla Gly Thr Leu Ser Val His His Cys Ala Cys Phe Glu Ser Phe Thr
51/105
aag aga aaaLys Arg Lys
aaa aaa tta aag aaa gcc ttt aga ttt atc caa tgt ttaLys Lys Leu Lys Lys Ala Phe Arg Phe Ile Gin Cys Leu
ctaLeu100
ctg gga ttg cttLeu Gly Leu Leu
aaaLys105
gtg agg ccc ctc caa cac cag ggg gtt aatVal Arg Pro Leu Gin His Gin Gly Val. Asn
1004
1052
1100tcc tgt gat tgt gaa agg ggc tac ttcSer Cys Asp Cys Giu Arg Gly Tyr Phe
120
caa ggcGin Gly125
atc ttc atg cag gcaIle Phe Met Gin Ala
130
gcc oct tgSAla Pro Trr
agcctcgtggaattgcttggcagtgattatgaatgtcgcctgggttggggccagaatacgcctaagggacctgaagatcaaatgatatt
gag ggc acGlu Gly T1135
ttactgagtaacctggtgacagaccgagagtttccccctggctggagttcctagatttaggaggctcccataagatcctactgtttttaa
:c tga gagctggtag agtctgaaat tagggatgtgr*
aggtaaaattaagggctcctagtaggagttggttttggataatgaggttttacccaaacttccttcgttcacatgtacatataaacagac
gcatccaccagttcaatagtgaggtgaggtcactaattcaatttttagctcttcttagtccccagccagctttatgtaaaaaaacttg
ttgtttgtgaggtgttgggggaaggaggtgaggc tott ct
ggcccacccatgaaatctgcctaggacttctatgtgcata
taccttagggagagagagago tgggggtgaggatgtttctgatacactcatggatttctggaatgtggagtttgtacata
1151
121112711331139114511511157116311669
<210> 29<211> 137<212> PRT<213> HOMO sapiens
<400> 29Met Arg Arg1
Phe Phe Leu
Tyr Phe Tyr
Gin Ala Gly
Giu Leu Leu Ala Gly Ile Leu10Pro
Leu Arg Ile Thr Phe Asn
Phe
Phe
Phe Leu Pro Phe25Glu
Leu Val Val
Tyr Phe Phe Leu40Gly
Met Glu Ser His
Pro
Phe Phe Ile
Tyr Val Ala
Ala Ser AspLeu Glu Leu
Ser Leu
Ser Phe
Gin Cys
Leu
Leu
Ser Ser Asn
Val Ala (fly
Thr Lys Arg
Leu Leu Leu
Ser Val His Ala Cys Phe
Lys Lys Lys Leu Ala Phe Arg Phe Ile
Gly Leu Leu Arg Pro Leu
Gly Val Asn
Gin His Gin110Gly Ile PheCys Asp Cys Glu Arg
120Gly Thr
Gly Tyr Phe Gin125
Met Gin130
Ala Pro Trp
<210> <211> 510<212> PRT<213> Homo sapiens
<400>
52/105
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Giu Ala Trp Leu
00 15 10 isLeu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25 Giu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
40 S Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Clu Gin Val Gly Gin
55 Val Ala Trp Ala Arg Val Asp Ala Gly Giu Gly Ala Gin Giu Leu Ala
S 65 70 75 Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly
90 Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110Leu Leu Arg Asn Ala Val Gin Ala Asp Giu Gly Glu Tyr Giu Cys Arg
C1115 120 125Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
130 135 140
00 Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Giu145 150 155 160
S Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Giu Gly SerC1165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Giu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Giu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro290 295 300
Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Giu Glu Giu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Giu Ser Val
405 410 415Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430Cys Ser Val Met Ser Glu Giu Pro Giu Gly Arg Ser Tyr Ser Thr Leu
435 440 445Thr Thr Val Arg Glu Ile Giu Thr Gin Thr Glu Leu Leu Ser Pro Gly
450 455 460Ser Gly Arg Ala Giu Glu GlU GiU Asp Gin Asp Glu Gly Ile Lys Gin465 470' 475 480
53/105
Ala Met Asn His Phe Val Gin Giu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 31<211> 510
<212> PRT<213> HomO sapiens
<400> 31Met Pro Leu Ser Le
1 5Leu Leu Leu Leu Le
Glu Leu Giu Thr Se
Lys Leu Pro Cys Le
Val Ala Trp Ala Ar
Leu Leu His Ser Ly
Arg Val Glu Gin Pr100
Leu Leu Arg Asn Al115
Val Ser Thr Phe Pi130
Val Leu Val Pro PI145Glu Gly Gin Gly L
1~Pro Ala Pro Ser V~
180Ser Arg Ser Phe L'
195His Leu Val Pro Si
210Val Ser His Pro G
225His Val Ser Phe L
2
Asn Leu Trp His I260
Glu Gly Gln Pro P275
Leu Pro Ser Gly V290
Leu Thr Thr Glu H305Phe Ser Ser Arg P
3
Glu Asp Ser Gly L340
Val Gly Val Ile P
u Gly Ala Glu Met Trp Gly Pro Giu Ala Trp Leu10
u
r
u
'5
:0
aa
:0
r
ly65al
ys
er
ly
eu45le
rc
'a]
s2
yy
Leu
Asp
Tyr
Val70Tyr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu23CAlz
Gl)
Prc
Arc
3 Sei31(
3 Se
s G1l
a Al
Ala S
Val V4
Arg G
55Asp P
Gly I
Pro I
Gin I
Gly135
Pro
Leu
Trp
Ser
Ser215
Leu
Glu
Arg
Ser
3 Val295
r Gly
0r Gin
n Val
a Leu
er
'al.0;ly
la
Jeu
!ro
klaL20
Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280
Asp
Ile
Val
Asj
Let36(
Phe'Thr C
25Thr Val N
Asp Ser C
Gly Glu
His Val
90
Arg Asn105
Asp Glu
Phe Gin
Leu Asn
Ala Ser170
Thr Glu185
Ser Ala
Asf Gly
Asp Gin
Ser Val250
Gly Ala265
Asn Trp
Gly Asp
Tyr Val
Thr Vai330
Leu Val
345
i phe Cys
fly
Tal
Sly
flY
75Ser
Pro
3iy
Ala
Pro155Cys
Va1
Ala
Gin
Arg235Arg
Met
Th2
Thi
Cy31!Asj
Se
Le
Arg C
Leu G4
Glu C
Ala C
Pro
Leu I
Glu
Arg140
Gly
Thr
Lys
Val
Pro220
Ile
Gly
Leu
Arg
T Leu
300
s His
Val
r Ala
u Leu
a Gin
380
.ys
fly
l1n
ln
kla
sp
ryr125Eeu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gl
Val
Let
Se3
Va36!
Pro P
Gin I
Vai C
Glu I
Tyr
Gly110
Glu
Arg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270
Asp
Phe
Ser
i Asp
Val
3501 Val
la
~sp
Sly
jeu
31u
Ser
cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gl
Prc
Asi
Prc33!Va
Va
Gly
Ala
Gin
Ala
Gly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
i Glu320Gin
1 Val
1 Val
r GinVal Leu370
Met Ser Arg Tyr Arg Arg Lys Al: Gin Met Th:
54/105
Lys Tyr Glu Giu Giu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg Arg
00 385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Glu Ser Val
405 410 415
rN~ Gly Leu Arg Ala Giu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser420 425 430
ct Cys Ser Val Met Ser Giu Glu Pro Giu Gly Arg Ser Tyr Ser Thr Leu435 440 445
Thr Thr Vai Arg Glu Ile Giu Thr Gin Thr Giu Leu Leu Ser Pro Gly450 455 460
Ser Gly Arg Ala Giu Giu Glu Giu Asp Gin Asp Giu Gly Ile Lys Gin465 470 475 480Ala Met Asn His Phe Val Gin Giu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495Thr Gly Asn Giy Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
00 .<210> 32<211> 295<212> PRT<213> Homo sapiens
<400> 32Met Asn Gly Gin Pro Leu Thr Cys Vai Val Ser His Pro Gly Leu Leu1 5 10
Gin Asp Gin Arg Ile Thr His Ile Leu His Val Ser Phe Leu Ala Glu25
Ala Ser Val Arg Gly Leu Glu Asp Gin Asn Leu Trp His Ile Gly Arg40
Glu Gly Ala Met Leu Lys Cys Leu Ser Glu Gly Gin Pro Pro Pro Ser55
Tyr Asn Trp Thr Arg Leu Asp Gly Pro Leu Pro Ser Gly Val Arg Val70 75
Asp Gly Asp Thr Leu Gly Phe 'Pro Pro Leu Thr Thr Giu His Ser Giy90
Ile Tyr Val Cys His Val Ser Asn Giu Phe Ser Ser Arg Asp Ser Gin100 105 110
Val. Thr Val Asp Val Leu Asp Pro Gin Glu Asp Ser Gly Lys Gin Val115 120 125
Asp Leu Val Ser Ala Ser Val Val Val Vai Gly Val Ile Ala Ala Leu130 135 140
Leu Phe Cys Leu Leu Val Val Val Val Val Leu Met Ser Arg Tyr His145 i50 155 160Arg Arg Lys Ala Gin Gin Met Thr Gin Lys Tyr Giu Glu Giu Leu Thr
165 170 175Leu Thr Arg Giu Asn Ser Ile Arg Arg Leu His Ser His His Thr Asp
180 185 190Pro Arg Ser Gin Pro Giu Giu Ser Vai Gly Leu Arg Ala Giu Gly His
195 200 205Pro Asp Ser Leu Lys Asp Asn Ser Ser Cys Ser Val Met Ser Glu Giu
210 215 220Pro Glu Gly Arg Ser Tyr Ser Thr Leu Thr Thr Val Arg Giu Ile Giu225 230 235 240Thr Gin Thr Giu Leu Leu Ser Pro Gly Ser Gly Arg Ala Giu Glu Giu
245 250 255Giu Asp Gin Asp Giu Gly Ile Lys Gin Ala Met Asn His Phe Val Gin
260 265 270Glu Asn Gly Thr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile Tyr Ile
275 280 285
55/105
Asn Gly Arg Gly His Leu Val
290 295
00
00
<210> 33<211> 485<212> PRT<213> Homo sapiens
<400> 33Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Giu Ala Trp Leu
1
Leu
Glu
Lys
Val65Leu
Arg
Leu
Va1
Val145Glu
Pro
Ser
His
Val225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Leu
Leu
Leu
Ala
Leu
Val
Leu
Ser130Leu
Gly
Ala
Arg
Leu210Ser
Val
Leu
Gly
Pro290Thr
Ser
Asp
Gly
Leu370
Leu
Glu
Pro
Trp
His
Glu
Arg115Thr
Val
Gin
Pro
Ser195Val
His
Ser
Trp
Gin275Ser
Thr
Ser
Ser
Val355Met
eu
Thr
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gl)
Gl
Arc
G134(I1
Sei
Leu
Ser
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
i His
I Asp325Lys
e Ala
r Arg
Leu
Asp
Tyr
Val70Tyr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Sey
Glr
Alz
Tyl
Ala
Val
Arg55Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Val295Gly
Gin
Val
Leu
His375
3er
lal
3iy
Ala
Leu
Pro
Ala120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Val
Asp
Lev360Arc
Phe I
Thr
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
hr
Ial
jer
'lu
lal
%sn
Glu
Gin
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asp
Val
Val330Val
Cyc
LyE
Gly 2
Val
Gly
Gly75Ser
Pro
Gly
Ala
Pro155Cys
Val
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Ser
Leu
3 Ala
k.rg
Leu
Glu
Ala
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Leu
Gir
Cys 1
Gly C
Gin N
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Va1
Leu
Ser
Val365Gin
~ro00ln I
Ial
'lu
yr
3,111031u
Arg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
kla
ksp
ly
Leu
Glu
Ser
eys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thi
Gly
Ala
Gin
Ala
Gly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
Val
Gln
380
Lys Tyr Glu Glu Giu Leu Thr Lou Thr Arg Giu Asn Ser Ile Arg Axg
385 390 395 400
56/105
00
Leu
Gly
Thr
Gin
Gly465Arg
His
Arg
Glu
Asp450Thr
Gly
Ser His His405
Ser Tyr Ser420
Leu Leu Ser435Glu Gly Ile
Leu Arg Ala
His Leu Val485
Thr Asp Pro Arg Ser410
Thr Leu Thr Thr Val425
Pro Gly Ser Gly Arg440
Lys Gin Ala Met Asn455
Lys Pro Thr Gly Asn470
Gin Ser Glu Glu Pro415
Arg Giu Ile Giu Thr430
Ala Giu Giu Glu Glu445
His Phe Val Gin Glu460
Gly Ile Tyr Ile Asn475
Glu
Gin
Asp
Asn
Gly480
00
<210> 34<211> 510<212> PRT<213> Homo sapiens
<400> 34Met1
Leu
Glu
Lys
Val1
Leu
Arg
Leu
Val1
Val1145Glu
Pro
Ser
His
Val225His
Asn
Giu
Leu
Leu305
Pro
Leu
Leu
Leu
Ala
Leu
Val
Leu
Ser130Leu
Gly
Ala
Arg
Leu210Ser
Val
Leu
Gly
Pro290Thr
Leu
Leu
Gly
Pro
Trp
His
Giu
Arg115Thr
Val
Gin
Pro
Ser195Val1
His
Ser
Trp
Gin275Ser
Thr
Ser
Leu
Thr
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Leu
Leu
Ser
Phe
Arg
Lys
Pro
Al a
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
His
Gly
Leu
Asp
Tyr
Val
Tyr
Pro
Val
Al a
Leu150Thr
Thr
His
Arg
Leu230Al a
Giy
Pro
Arg
Ser310
Ala
Ala
Val
Arg
Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Val295Gly
Giu
Ser
Val40Gly
Al a
Leu
Pro
Ala120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Met
Phe25Thr
Asp
Gly
His
Arg105Asp
Phe
Leu
Al a
Thr185Ser
Asn
Asp
Ser
Gly265As n
Gly
Tyr
Trp10Thr
Val
Ser
Glu
Val90Asn
Glu
Gin
Asn
Ser170Clu
Al a
Gly
Gin
Val1250Ala
Trp
Asp
Val
Gly
Giy
Val
Gly
Gly75Ser
Pro
Gly
Al a
Pro155Cys
Val
Ala
Gln
Arg235Arg
Met
Thr
Thr
Cys315
Giu
Cys
Gly
Gin
Gin
Al a
Asp
Tyr125Leu
Pro
Al a
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Ala
Pro
Gin
Val
Glu
Tyr
Gly110Glu
Arg
Ala
Giu
Thr190Ser
Thr
His
Giu
Cys270Asp
Phe
Ser
Trp
Al a
Asp
Gly
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Leu
Gly
Ala
Gin
Al a
Gly
Val
Arg
Arg
Giu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320
57/105
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335
00 Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Vai Vai
0340 345 350
0 Val Gly Val Ile Ala Aia Leu Leu Phe Cys Leu Leu Val Val Vai Val
rl355 360 365
SVal Leu met Ser Ary Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Giu Giu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
385 390 395 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Giu Ser Vai
rl405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lye Asp Asn Ser Ser
420 425 430
Cys Ser Vai Met Ser Glu Glu Pro Glu Gly Arg Ser Tyr Ser Thr Leu
435 44045
Thr Thr Val Arg Giu Ile Giu Thr Gin Thr Giu Leu Leu Ser Pro Giy
450 455 460
C1 Ser Giy Arg Ala Giu Giu Giu Giu Asp Gin Asp Giu Gly Ile Lys Gin
00 465 470 475 480
Ala Met Asn His Phe Val Gln Giu Asn Giy Thr Leu Arg Ala Lye Pro
485 490 495
Thr Gly Asn Giy Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> <211> 510<212> PRT
<213> Homo sapiens
<400>
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Giy Pro Giu Ala Trp Leu
1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
Glu Leu Giu Thr Ser Asp Vai Val Thr Val Val Leu Gly Gin Asp Ala
40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin
55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Giu Leu Ala
70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val. Ser Pro Ala Tyr Glu Gly
90
Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg
115 120 125
Vai Ser Thr Phe Pro Ala Gly Ser Phe Gln Ala Arg Leu Arg Leu Arg
130 135 140
Val Met Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Giy Ser
165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Gly Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lye His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
195 200 205
His Leu Val. Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220
58/ 105
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 24000 His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Giu Asp Gin
245 250 255
Asn Leu Trp His Ile Gly Arg Giu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Vai Asp Val Leu Asp Pro Gin
325 330 335
Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Vai Val Vai
C1340 1 345 350
Val Giy Vai Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Giu Giu Giu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg Arg
CNI 385 390 395 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Giu Ser Val
405 410 415*Giy Leu Arg Ala Giu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430
Cys Ser Val Met Ser Giu Giu Pro Glu Gly Arg Ser Tyr Ser Thr Leu
435 440 445
Thr Thr Val Arg Giu Ile Giu Thr Gin Thr Giu Leu Leu Ser Pro Gly
450 455 460
Ser Gly Arg Ala Glu Giu Giu Giu Asp Gin Asp Giu Gly Ile Lys Gin
465 470 475 480
Ala Met Asn His Phe Vai Gin Giu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Giy His Leu Val
500 505 510
<210> 36<211> 510<212> PRT<213> Homo sapiens
<400> 36Met Pro Leu Ser Leu Gly Ala Giu Met Trp Gly Pro Giu Ala Trp Leu
1 5 10 Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
Giu Leu Giu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Giy Giu Gin Val Gly Gin
55 Val Ala Trp Ala Arg Val Asp Ala Giy Giu Gly Ala Gin Giu Leu Ala
70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Giu Gly90
Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Giu Tyr Glu Cys Arg
115 120 125
59/105
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
130 135 140
00 Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
S 145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly SerC 165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205
His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin245 250 255
Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
C Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
00 275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin325 330 335
Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
385 390 395 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430
Cys Ser Val Met Ser Glu Glu Pro Glu Gly Cys Ser Tyr Ser Thr Leu
435 440 445
Thr Thr Val Arg Glu Ile Glu Thr Gin Thr Glu Leu Leu Ser Pro Gly
450 455 460
Ser Gly Arg Ala Glu Glu Glu Glu Asp Gin Asp Glu Gly Ile Lys Gin
465 470 475 480
Ala Met Asn His Phe Val Gln Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 37<211> 511<212> PRT<213> Homo sapiens
<400> 37Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
60/105
Giu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
00
00
Lys
Val
Leu
Arg
Leu
Val1
Val145Giu
Pro
Ser
His
Val225His
Asn
Giu
Leu
Leu305Phe
Gin
Val
Val
Gin385Arg
Val
Ser
Leu
Gly465Gin
Pro
Leu
Al a
Leu
Val1
Leu
Ser130Leu
Gly
Ala
Arg
Leu210Ser
Val
Leu
Gly
Pro290Thr
Ser
Glu
Val
Val1370Lys
Leu
Gly
Cys
Thr450Ser
Ala
Thr
Pro
Trp,
His
Glu
Arg115Thr
Val1
Gin
Pro
Ser195Val
His
Ser
Trp
Gin275Ser
Thr
Ser
Asp
Gly355Leu
Tyr
Hi s
Leu
Ser435Thr
Gly
Met
Gly
Cys
Al a
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
GlU
Arg
Ser340Val1
Met
Giu
Ser
Arg420Val
Val1
Arg
Asn
As n500
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
His
Asp325Gly
Ile
Ser
Giu
His405Ala
Met
Arg
Ala
His485Gly
Tyr
Val70Tyr
Pro
Val
Al a
Leui50Thr
Thr
His
Arg
Leu230Al a
Gly
Pro
Arg
Ser310Ser
Lys
Ala
Arg
Giu390His
Glu
Ser
Glu
Glu470Phe
Ile
Arg55Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Giu
Arg
Ser
Val1295Gly
Gin
Gin
Ala
Tyr375Leu
Thr
Gly
Giu
Ile455Giu
Val
Tyr
40Gly
Ala
Leu
Pro
Ala120Ser
Ser
Ala
Asp
Arg200Met
Gin
Al a
Giu
Tyr280Asp
Ile
Val1
Val1
Leu360His
Thr
Asp
His
Giu440Giu
Glu
Gin
Ile
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Asp345Leu
Arg
Leu
Pro
Pro425Pro
Thr
Glu
Giu
Asn505
Ser
Giu
Val190Asn
Glu
Gin
Asn
Ser170Giu
Ala
Gly
Gin
Val250Al a
Trp
Asp
Val1
Val330Leu
Phe
Arg
Thr
Arg410Asp
Giu
Gin
Asp
Asn490Gly
Gly
Gly75Ser
Pro
Gly
Al a
Pro155Cys
Val
Al a
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Val1
Cys
Lys
Arg395Ser
Ser
Gly
Thr
Gin475Gly
Arg
Giu Gin
Ala Gin
Pro Ala
Leu Asp
Giu Tyr125
Arg Leu140Gly Pro
Thr Ala
Lys Gly
Val Thr205
Pro Leu220Ile Thr
Gly Leu
Leu Lys
Arg Leu285
Leu Gly300His Val
Val Leu
Ser Ala
Leu Leu365
Ala Gin380Giu Asn
Gin Pro
Leu Lys
Arg Ser445
Giu Leu460Asp Giu
Thr Leu
Gly His
Val
Giu
Tyr
Gly110Glu
Arg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Ser
Ala
Ser350Val
Gin
Ser
Glu
Asp430Tyr
Leu
Gly
Arg
Leu510
Gly
Leu
Giu
Ser
Cys
Leu
Leu
Gly175Thr
Giu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Asp335Val1
Val
Met
Ile
Giu415Asn
Ser
Ser
Ile
Ala495Val
Gin
Ala
dGy
Val1
Arg
Arg
Giu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Pro
Val
Val
Thr
Arg400Ser
Ser
Thr
Pro
Lys480Lys
61/105
00 <210> 38<211> 137<212> PRT
rN~ <213> Homo sapiens
<400> 38S Met Arg Arg Glu Leu Leu Ala Gly Ile Leu Leu Arg Ile Thr Phe Asn
1 5 10 Phe Phe Leu Phe Phe Phe Leu Pro Phe Pro Leu Val Val Phe Phe Ile
C120 25 Tyr Phe Tyr Phe Tyr Phe Phe Leu Glu Met Glu Ser His Tyr Val Ala
40 Gin Ala Gly Leu Giu Leu Leu Gly Ser Ser Asn Pro Pro Ala Ser Ala
55 Ser Leu Val Ala Gly Thr Leu Ser Val His His Cys Ala Cys Phe Giu
70 75
Ser Phe Thr Lys Arg Lys Lys Lys Leu Lys Lys Ala Phe Arg Phe Ile
0085 90 Gin Cys Leu Leu Leu Gly Leu Leu Lys Val Arg Pro Leu Gin His Gin
100 105 110Gly Val Asn Ser Cys Asp Cys Giu Arg Gly Tyr Phe Gin Gly Ile Phe
115 120 125
Met Gin Ala Ala Pro Trp Giu Gly Thr130 135
<210> 39<211> 137<212> PRT<213> Homo sapiens
<400> 39Met Arg Arg Giu Leu Leu Ala Gly Ile Leu Leu Arg Ile Thr Phe Asn
1 5 10 Phe Phe Leu Phe Phe Phe Leu Pro Phe Pro Leu Val Val Phe Phe Ile
25 Tyr Phe Tyr Phe Tyr Phe Phe Leu Giu Met Glu Ser His Tyr Val Ala
40
Gin Ala Giy Leu Giu Leu Leu Gly Ser Ser Asn Pro Pro Ala Ser Asp55
Ser Leu Val Ala Giy Thr Leu Ser Val His His Cys Ala Cys Phe Glu70 75
Ser Phe Thr Lys Arg Lys Lys Lys Leu Lys Lye Ala Phe Arg Phe Ile90
Gin Cys Leu Leu Leu Gly Leu Leu Lye Val Arg Pro Leu Gin His Gin100 105 110
Gly Val Asn Ser Cys Asp Cys Giu Arg Giy Tyr Phe Gin Gly Ile Phe115 120 125
Met Gin Ala Ala Pro Trp Glu Gly Thr130 135
<210> <211> 510<212> PRT<213> Homo sapiens
<400>
62/105
00
00
Met1
Leu
Glu
Lys
Val
Leu
Arg
Leu
Val
Val145Glu
Pro
Ser
His
Va1225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Lys385Leu
Gly
Cys
Thr
Leu
Leu
Glu
Pro
Trp
His
Glu
Arg115Thr
Val
Gln
Pro
Ser195Val
His
Ser
Trp
Gin275Ser
Thr
Ser
Ser
Val355Met
Glu
Ser
Arg
Val435Val
Ser
Leu
Thr
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Arg
Gly340Ile
Ser
Glu
His
Ala420Met
Arg
Leu5
Leu
Ser
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
His
Asp325Lys
Ala
Arg
Glu
His405Glu
Ser
Glu
Glu
Gly
Leu
Asp
Tyr
Val70Tyr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gin
Ala
Tyr
Leu390Thr
Gly
Glu
Ile
Glu470
Ala
Ala
Val
Arg
Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Val295Gly
Gin
Val
Leu
His375Thr
Asp
His
Glu
Glu455Glu
Glu
Ser
Val40Gly
Ala
Leu
Pro
Ala120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Va1
Asp
Leu360Arg
Leu
Pro
Pro
Pro440Thr
Glu
Met
Phe
Thr
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
Thr
Arg
Asp425Glu
Gin
Asp
Pro Giu Ala
Arg
Leu
Glu
Ala
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Leu
Gin380Asn
Pro
Lys
Ser
Leu460Glu
Cys
Gly
Gin
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lye
Leu285Gly
Val
Leu
Ser
Val365Gin
Ser
Glu
Asp
Tyr445Leu
Gly
Trp
Ala
Asp
Gly
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
Ser415Ser
Thr
Pro
Lye
Leu
Gly
Ala
Gin
Ala
Gly
Vai
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
Val
Gin
Arg400Val
Ser
Leu
Gly
Gin480
Ser Gly Arg Ala
63/105
Ala Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
00 Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 41<211> 510<212> PRT
<213> Homo sapiens
<400> 41
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10
S Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
Glu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
40
1 Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin
00 50 55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala
S 65 70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly90
Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg
115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg
130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
145 150 155 160
Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205
His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255
Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335
Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
64/105
Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
S 385 390 395 400S Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser420 425 430
S Cys Ser Val Met Ser Glu Glu Pro Glu Gly Arg Ser Tyr Ser Thr Leu435 440 445
Thr Thr Val Arg Glu Ile Glu Thr Gin Thr Glu Leu Leu Ser Pro Gly450 455 460
Ser Gly Arg Ala Glu Glu Glu Glu Asp Gin Asp Glu Gly Ile Lys Gin465 470 475 480Ala Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
00 <210> 42<211> 510<212> PRT
C <213> Homo sapiens
<400> 42Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly25
Glu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala40
.Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly90
Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu145 150 155 160Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
65/105
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
00 Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu
S 305 310 315 320
0 Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
C1 325 330 335
Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
C 340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380
Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg
385 390 395 400
Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430
Cys Ser Val Met Ser Glu Glu Pro Glu Gly Arg Ser Tyr Ser Thr Leu
00 435 440 445
Thr Thr Val Arg Glu Ile Glu Thr Gin Thr Glu Leu Leu Ser Pro Gly
450 455 460
Ser Gly Arg Ala Glu Glu Glu Glu Asp Gin Asp Glu Gly Ile Lys Gin
465 470 475 480
Ala Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 43<211> 508<212> PRT<213> Homo sapiens
<400> 43Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10
Arg Leu Leu Phe Leu Ala Ser Phe Thr Gly Gin Tyr Ser Ala Gly Glu
25
Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala Lys
40
Leu Pro Cys Phe Tyr Arg Gly Asp Pro Asp Glu Gin Val Gly Gin Val
55
Ala Trp Ala Arg Val Asp Pro Asn Glu Gly Ile Arg Glu Leu Ala Leu
70 75
Leu His Ser Lys Tyr Gly Leu His Val Asn Pro Ala Tyr Glu Asp Arg
90
Val Glu Gin Pro Pro Pro Pro Arg Asp Pro Leu Asp Gly Ser Val Leu
100 105 110
Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg Val
115 120 125
Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Met Arg Leu Arg Val
130 135 140
Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Pro Leu Glu Glu
145 150 155 160
Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser Pro
165 170 175
Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Gin Ser Ser
180 185 190
66/105
Arg Ser Phe Thr His Pro Arg Ser Ala Ala Val Thr Ser Glu Phe His195 200 20500
00
Leu Val210
Ser His225Val Ala
Leu Trp
Gly Gin
Pro Ser290
Thr Thr305Ser Ser
Pro Gly
Val Ile
Met Ser370
Glu Glu385Ser His
Arg Ala
Val Met
Val Arg450
Arg Thr465Asn His
Asn Gly
Pro
Pro
Phe
Gin
Pro275Gly
Giu
Arg
Lys
Ala355Arg
Glu
His
Glu
Ser435Glu
Glu
Phe
Ile
Ser
Gly
Leu
Val260Pro
Val1
His
Asp
Gin340Ala
Tyr
Leu
Ser
Gly420Glu
Ile
Giu
Val
Tyr500
Arg
Leu
Al a245Gly
Pro
Arg
Ser
Ser325Val1
Leu
His
Thr
Asp405His
Giu
Glu
Asp
Gin485Ile
Ser Met215
Leu Gin230Giu Ala
Arg Giu
Lys Tyr
Val Lys295
Gly Val310Gin Val
Asp Leu
Leu Phe
Arg Arg375
Leu Thr390Pro Arg
Pro Asp
Pro Giu
Thr Gin455
Asp Asp470Glu Asn
Asn Gly
Asn
Asp
Ser
Gly
As n280Gly
Tyr
Thr
Val1
Cys360Lys
Arg
Ser
Ser
Gly440Thr
Gin
Gly
Arg
Gin
Arg
Arg250Thr
Thr
Thr
Cys
Giu330Ala
Leu
Gin
Asn
Pro410Lys
Ser
Leu
Glu
Leu490His
Pro
Ile235Gly
Leu
Arg
Leu
His315Val1
Ser
Val1
Gin
Ser395Giu
Asp
Tyr
Leu
Gly475Arg
Leu
Leu220Thr
Leu
Lys
Leu
Gly300Val1
Leu
Val1
Val
Met380Ile
Glu
Asn
Ser
Ser460Ile
Al a
Val
Thr
His
Giu
Cys
Asp285Phe
Ser
Asp
Ile
Vai365Thr
Arg
Ser
Ser
Thr445Pro
Lys
Lys
Vai Val
Leu Gin240
Gin Asn255Ser Glu
Pro Leu
Pro Leu
Glu Leu320
Giu Asp335Vai Gly
Val Leu
Lys Tyr
Leu His400
Gly Leu415Cys Ser
Thr Thr
Ser Gly
Ala Met480
Thr Giy495
<210> 44<211> 14<212> PRT<213> Tetanus toxoid
<400> 44Gin Tyr Ile Lys Ala Asn Ser Lys Phe Ile Giy Ile Thr Glu1 5
<210> <211> 21<212> PRT<213> Piasmodium falciparum
<400> Asp Ile Giu. Lys Lys Ile Ala Lys Met Glu Lys Ala Ser Ser Val Phe1 5 10
67/105
Asn Val Val. Asn Ser
00
<210> 46C1 <211> 16
S <212> PRT<213> Streptococcus
<400> 46GyGlVa AlTrTr AaAa
Gly Ala Val Asp Ser Ile Leu Gly lVaAaThTyGyAaAa
1 510
<210> 47
<211> 13
(i <212> FRT<213> Artificial Sequence
00 <220>
<221> VARIANT
c~1 <222> 3<223> Xaa cyclohexylalanine, phenylalanine, or
tyrosifle.
<221> VARIANT
<222> 1, 13<223> Xaa D-alanine or L-alanine
<223> Pan DR-binding Epitope
<400> 47
Xaa Lys Xaa Val Ala Ala Trp Thr Leu Lys Ala Ala Xaa
1 5
<210> 48<211> 14<212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 48
ttttgatcaa gctt 14
<210> 49<211> 42<212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 49
ctaatacgac tcactatagg gctcgagcgg ccgcccgggc ag 42
<210> <211> 12
68/105
<212> DNA
<213> Artificial Sequence
<220>
<223> Primer
S <400> gatcctgccc gg 12
0 <210> 51<211> <212> DNA<213> Artificial Sequence
<220><223> Primer
(<N<400> 51
00 gtaatacgac tcactatagg gcagcgtggt cgcggccgag
<210> 521 <211>
<212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 52gatcctcggc
<210> 53<211> 22<212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 53ctaatacgac tcactatagg gc 22
<210> 54<211> 22<212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 54tcgagcggcc gcccgggcag ga 22
<210> <211> <212> DNA<213> Artificial Sequence
<220><223> Primer
69/105
<400>
00 agcgtggtcg cggccgagga
<210> 56<211>
<212> DNA
<213> Artificial Sequence
S <220><223> Primer
<400> 56atatcgccgc gctcgtcgtc gacaa
<210> 57<211> 26<212> DNA<213> Artificial Sequence
00<220><223> Primer
<400> 57agccacacgc agctcattgt agaagg 26
<210> 58<211> <212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 58
ggctggagtt caatgaggtt tattt
<210> 59<211> <212> DNA<213> Artificial Sequence
<220><223> Primer
<400> 59tccagcagat ttcagactaa gaaga
<210> <211> 24<212> DNA<213> Artificial Sequence
<220>
<223> Epitope Tag
,<400> gattacaagg atgacgacga taag 24
<210> 61
70/105
<211> 4
00 <212> PRT
<213> Homo sapiens
C1 <400> 61Asn Trp Thr Arg1
<210> 62
C1 <211> 4<212> PRT<213> Homo sapiens
<400> 62Asn Ser Ser Cys1
00<210> 63<211> 4
<212> PRT<213> Homo sapiens
<400> 63Asn Gly Thr Leu
<210> 64<211> <212> PRT<213> Homo sapiens
<400> 64Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys Arg Val Ser Thr Phe1 5 10
<210> <211> 4<212> PRT<213> Homo sapiens
<400> Thr Arg Leu Asp1
<210> 66<211> 4<212> PRT<213> HOMO sapiens
<400> 66Ser Ser Arg Asp1
<210> 67
71/105
00
00
<211> 4<212> PRT<213> Homo sapiens
<400> 67Ser Gin Pro Giu
<210> 68<211> 4<212> PRT<213> Homo sapiens
<400> 68Ser Leu Lys Asp1
<210> 69<211> 4<212> PRT<213> Homo sapiens
<400> 69Thr Val Arg Glu1
<210> <211> 4<212> PRT<213> Homo sapiens
<400> Thr Gin Thr Glu1
<210><211><212><213>
716PRTHomo sapiens
<400> 71Gly Ser Phe
IGin Ala Arg
<210> 72<211> 6<212> PRT<213> Homo sapiens
<400> 72Gly Gin Gly Leu Thr Leu
<210> 73
72/105
00
00
<211><212><213>
6PRTHomo sapiens
<400> 73Gly Leu Thr Lev Ala Ala
1
<210> 74<211> 6<212> PRT<213> Homno sapiens
<400> 74Gly Thr Thr Ser Ser Arg
<210> <211> 6<212> PRT<213> H-omo sapiens
<400> Gly Gin Pro Leu Thr Cys
<210> 76<211> 6<212> PRT<213> Homo sapiens
<400> 76Gly Ilie Tyr Val Cys His
1
<210> 77<211> 6<212> PRT<213> Homo sapiens
<400> 77Gly Val Ile Ala Ala Leu
<210> 78<211> 6<212> PRT<213> Homo sapiens
<400> 78Gly Ser Gly Arg Ala Glu
1
<210> 79
73/105
00
00
<211> 6<212> PRT<213> Homo sapiens
<400> 79Gly Ile Lys Gin Ala Met
<210> <211> 6<212> PRT<213> Homo sapiens
<400> Gly Thr Leu Arg Ala Lys
1
<210> 81<211> 6<212> PRT<213> Homo sapiens
<400> 81Gly Ile Tyr Ile Asn Gly
<210><211><212><213>
82510PRTHomo sapiens
<400> 82Met
Leu
Glu
Lys
Val
Leu
Arg
Leu
Val
Val145Giu
Pro
Pro
Leu
Leu
Leu
Al a
Leu
Val
Leu
Ser130Leu
Gly
Al a
Ser
Leu
Thr
Cys
Al a
Ser
Gin100Asn
Phe
Pro
Gly
Ser180
Leu
Leu
Ser
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Gly Ala Glu Met Trp Giy Pro Glu Ala Trp Leu
Ala
Val
Arg55Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser Phe25
Val Thr
Giy Asp
Ala Gly
Leu His
Pro Arg105
Ala Asp120Ser Phe
Ser Leu
Ala Ala
Asp Thr185
10Thr
Val
Ser
Giu
Val90Asn
Glu
Gin
Asn
Ser170Glu
Ala
Arg
Leu
Glu
Al a
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Cys
Gly
Gin
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr
Pro
Gin
Val1
Glu
Tyr
Gly110Glu
Arg
Al a
Glu
Thr190Ser
Al a
Asp
Gly
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Gly
Ala
Gin
Ala
Gly
Val
Arg
Arg
Glu160Ser
Ser
PheSer Arg Ser Phe Lys His Ser Arg Ser
74/105
195 200 205
00 His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val210 215 220
Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255
Asn Leu Trp, His Ile Gly Arg Giu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Glu Giy Gln Pro Pro Pro Ser Tyr Asn Trp, Thr Arg Leu Asp Gly ProC1275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 '300Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu
35310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
rl325 330 335Giu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
00 340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Vai Val Val Val
355 360 365C1 Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 .375 380
Lys Tyr Giu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Glu Glu Ser Val
405 410 415
Gly Leu Arg Ala Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser420 425 430
Cys Ser Val Met Ser Glu Giu Pro Giu Gly Arg Ser Tyr Ser Thr Leu435 440 445
Thr Thr Val Arg Giu Ile Glu Thr Gin Thr Giu Leu Leu Ser Pro Gly450 455 460
Ser Gly Arg Ala Giu Giu Giu Glu Asp Gin Asp Giu Gly Ile Lys Gin465 470 475 480Ala Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495Thr Gly Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
500 505 510
<210> 83<211> 17<212> PRT<213> Homo sapiens
<400> 83Gly Gin Asp Ala Lys Leu Pro Cys Leu Tyr Arg Gly Asp Ser Gly Giu1 5 10
Gin
<210> 84<211> 19<212> PRT<213> Homo sapiens
<400> 84Leu Gly Gin Asp Ala Lys Leu Pro Cys Leu Tyr Arg Gly Asp Ser Gly
75/105
00
1 5 Giu Gin Val
<210> <211> 29<212> PRT<213> Homo sapiens
<400> Vai Val Thr Val Val Leu Gly Gin
1 5Arg Gly Asp Ser Gly Giu Gin Val
Asp Ala Lys Leu Pro Cys Leu Tyr10
Gly Gin Val Ala Trp
<210> 86<211> 16<212> PRT<213> Homo sapiens
<400> 86Ser His His Thr Asp Pro Arg Ser Gin Ser Glu Glu Pro Giu Gly Arg1 5 10
<210> 87<211> 18<212> PRT<213> Homo sapiens
<400> 87His Ser His His Thr Asp Pro Arg Ser Gin Ser Glu Glu Pro Glu Gly1 5 10
Arg Ser
<210> 88<211> 28<212> PRT<213> Homo sapiens
<400> 88Ser Ile Arg Arg Leu
1 5Giu Giu Pro Glu Gly
<210> 89<211> 137<212> PRT<213> Homio sapiens
His Ser His
Arg Ser Tyr
His Thr Asp Pro Arg Ser Gin Ser10
Ser Thr Leu Thr
<400> 89Met Arg Arg Giu Leu Leu Ala Gly Ile
1 5Phe Phe Leu Phe Phe Phe Leu Pro Phe
Leu Leu Arg Ile Thr Phe Asn10 Pro Leu Val Val Phe Phe Ile
76/105
25
0 -Tyr Phe Tyr Phe Tyr Phe Phe Leu Glu Met Glu Ser His Tyr Val Ala40
Gin Ala Gly Leu Giu Leu Leu Gly Ser Ser Asn Pro Pro Ala Ser Ala
55 Ser Leu Val Ala Gly Thr Leu Ser Val His His Cys Ala Cys Phe Glu
70 75 S Ser Phe Thr Lys Arg Lys Lys Lys Leu Lys Lys Ala Phe Arg Phe Ile
90 Gin Cys Leu Leu Leu Gly Leu Leu Lys Val Arg Pro Leu Gin His Gin
c-1100 105 110Gly Val Asn Ser Cys Asp Cys Giu Arg Gly Tyr Phe Gin Gly Ile Phe
115 120 125Met Gin Ala Ala Pro Trp Giu Gly Thr
130 135
<210>
00 <211> 17<212> PRT<213> Homo sapiens
<400> Gly Arg Cys Pro Ala Gly Glu Leu Gly Thr Ser Asp Val Val Thr Val
1 5 10 Val
<210> 91<211> 19<212> PRT<213> Homo sapiens
<400> 91Thr Gly Arg Cys Pro Ala Gly Glu Leu Gly Thr Ser Asp Val Val Thr1 5 10
Val Val Leu
<210> 92<211> 29<212> PRT<213> Homo sapiens
<400> 92Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly Giu Leu Gly Thr1 5 10
Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala Lys
<210> 93<211> 17<212> PRT,<213> Homo sapiens
<400> 93Gin Ala Arg Leu Arg Leu Arg Val Met Val Pro Pro Leu Pro Ser Leu
77/105
1 5 10 Asn
00
<210> 94
S <212> PRT<213> Homo sapiens
<400> 94
Phe Gin Ala Arg Leu Arg Leds Arg Val Met Val Pro Pro Leu Pro Ser
1 5 10
Leu Asn Pro
<210> C1 <211> 29
00 <212> PRT
<213> Homo sapiens
C1 <400>
Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg Val Met Val
1 5 10
Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu
<210> 96<211> 17<212> PRT<213> Homo sapiens
<400> 96
Val Met Ser Glu Glu Pro Glu Gly Cys Ser Tyr Ser Thr Leu Thr Thr
1 5 10
Val
<210> 97<211> <212> PRT<213> HOMO sapiens
<400> 97
Ser Val Met Ser Glu Giu Pro Giu Gly Cys Ser Tyr Ser Thr Leu Thr
1 5 10
Thr Val Arg Glu
<210> 98<211> 29<212> PRT<213> HOMO sapiens
<400> 98Asp Asn Ser Ser Cys Ser Val Met Ser Glu Glu Pro Glu Gly Cys Ser
78/105
000D
j?
1 5 10 Tyr Ser Thr Leu Thr Thr Val Arg Glu Ile Glu Thr Gin
20
<210> 99<211> 17<212> PRT<213> Homo sapiens
<400> 99Ser Gin Val Thr Val Asp Val Leu Ala Asp Pro Gin Glu Asp Ser Gly1 5 10
Lysr-
<210> 100<211> 19<212> PRT<213> Homo sapiens
<400> 100Asp Ser Gin Val Thr Val Asp Val Leu Ala Asp Pro Gin Glu Asp Ser1 5 10
Gly Lys Gin
<210> 101<211> 29<212> PRT<213> Homo sapiens
<400> 101Glu Phe Ser Ser Arg Asp Ser Gin1 5
Pro Gin Glu Asp Ser Gly Lys Gin
Val Thr Val Asp Val Leu Ala Asp10
Val Asp Leu Val Ser
<210> 102<211> 17<212> PRT<213> Homo sapiens
<400> 102Gly Ser Ser Asn Pro Pro Ala Ser Ala Ser Leu Val Ala Gly Thr Leu1 5 10
Ser
<210> 103<211> 19<212> PRT<213> Homo sapiens
<400> 103Leu Gly Ser Ser Asn Pro Pro Ala Ser Ala Ser Leu Val Ala Gly Thr
79/105
00
00
1 5 10 Leu Ser Val
<210> 104<211> 29<212> PRT<213> Homo sapiens
<400> 104Ala Gly Leu Glu Leu Leu Gly Ser Ser Asn Pro Pro Ala Ser Ala Ser
1 5 10
Leu Val Ala Gly Thr Leu Ser Val His His Cys Ala Cys
<210> 105<211> 3344<212> DNA<213> Homo sapiens
<400> 105ggccgtcgttacggcttctttcccctagtgcagttccttaagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatCgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggcctgcctcttgggggcCtcttgacctttcaccatgcattgtgtgtgtc-ctgtcatatcgggcaacactaaagcaggtEggtggagact
9ttggccacagggggtzagctgagacccaagtt caag t ctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactcgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggctgagagagtgaagagacagactgaa*aggcatcaaa*cacgggcaat*ccttccctac*ccttaaacac*acctccaaccgcaggtcactIgaggggtgacagagtcaagt
-gtcagggttt
ittttctcagigtggctcag
gcgtgggaagacggctgggttgcgagaggcctactgctgggtaactgtgggagcaagtgggcgctactgcc agc cgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtc acattggcatacaactggattgggctttcgagt tctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgccgagggcc*cccgagggcc*ctgctgtctccaggccatgaggcatctaceIgcctggctccccccatttctcttctgttczgtgtgtgtgctgtccgtggzgaactgtggtggcgtgtgt<
x. ccccagagcii cccaggtgt(
cagctctggggtgtagaacgaagaactctgcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacacaccctgataggcagttactccaggctctggLaccattttgtLtcaatgggcs_ttctgttgactgcggaagatLtcgggagggcatgtgtgcctggggtgact,-gtatgtgccz;tcatgtggct
cgggcatagc
ggagctcggagggccggggCcagcttcctgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggacccaggtctcaaggaccacgctgacc
*gcgggccgagtcaggagaatgggacacctg*atgggagatt*gctccccatc*tccaccaatt*gtgtgagtgtItgtccgtggti cgggatttgagtgtgtgacc
i tgcagaggtttggagctgga
4ctcccgatc :ggggctggg 120ccttctgggt 180cccgcgggtg 240ctgccctgct 300gtggacgcgg 360gtgagcccgg 420ggctcagtgc 480agcaccttcc 540ctgccctcac 600tcctgcacag 660acaacgtcca 720ttggtgccta 780ctgctccagg 840gtgaggggcc 900tgcctgagtg 960cccagtgggg 1020agcggcatct 1080gtggatgttc 1140gtggtggtgg 1200ctcatgtccc 1260ctgaccctga 1320agccagccgg 1380aacagtagct 1440acggtgaggg 1500gaggaggaag 1560gggaccctac 1620gtctgaccca 1680ttagctcatc 1740ccactgactg 1800gagtctctcc 1860tgactgactg 1920gtgtattatg 1980gtggttgcgt 2040tctgcctgaa 2100ggaggagaga 2160atctgcctcc 2220
80/105
00
00
ggtgtgaggggt ccc tgggttgggcc tgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttggagccagaataggcctaaggggcctgaagataaaatgatat
aacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagttcc taga tt taagaggctcccctaagatcct
ctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgt tat cc aatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttttggacaatgaggttgtacccaaacatccttcgttaacatgtaca
ggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattctatttttagctcttcttagtccccagccagttttatgtaacaaaacttga
gggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaaattgtttgtgtggtgt tgggtgaaggaggtaaggctcttctggcccacccctgaaatctgcctaggacttatatgtgcataaaa
gaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttcagatacactcctggatttctcgaatgtggaatttgtacat
2280234024002460252025802640270027602820288029403000306031203180324033003344tctgttttta aataaacaga
<210> 106<211> 3464<212> DNA<213> Homo sapiens
<400> 106ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcata cca aagga tttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggcctgcctcttgggggcctcttgacctttcaccatgcat
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttcagctgctgctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggctgagagagtgaagagacagactgaaaggcatcaaacacgggcaatccttccctagccttaaacacacctccaaccgcaggtcact
gcgtgggaagacggctgggttgcgagaggccagccggctcaccatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtcac at tggcat acaac tggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctacagcctggctccccccatttctcttctgttcagtgtgtgtgc
c agc t ctggggtgtagaacgaagaactctgccagggagattgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtt tctggtggtcccagaaatacccatcacacaccctgataggcagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagattcgggagggcatgtgtgcct
ggagctcgga9ggCCggggccagcttcctgctcggtggaaagccgagatgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctga tgggagattgctccccatctccaccaattgtgtgagtgt
gctcccgatctggggctgggccttctgggtcttcagaaactgggggcctgcccgcgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccctgccctcactcctgcacagacaacgtccattggtgcctac tgctccagggtgaggggcctgcctgagtgcccagtggggagcggcatctgtggatgttcgtggtggtggctcatgtcccctgaccctgaagccagccggaacagtagctacggtgaggggaggaggaaggggaccctacgtctgacccattagctcatcccactgactggagtctctcctgactgactg
120180240300360420480540600660720780840900960102010801140120012601320138014401500156016201680174018001860192019802040
81/105
00
00
tgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctc tgggttggagccagaataggcctaaggggcctgaagataaaatgatat
gaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagttcctagatttaagaggctcccctaagatccttctgttttta
tgtccgtgga ggggtgactg tgtccgtggt gtgtattatg 2100gaactgtggt gtatgtgcca cgggatttga gtggttgcgt 2160
ggcgtgtgtg tcatgtggct gtgtgtgacc tctgcctgaa 2220ccccagagca gtattaatga tgcagaggtt ggaggagaga 2280
cccaggtgtg cgggcatagc tggagctgga atctgcctcc 2340ctaccacttc ggagccatgg gggcaagtgt gaagcagcca 2400
cttgaactgt tacagaagcc ctctgccctc tggtggcctc 2460
attttctgta aatatacatg cgccgggagc ttcttgcagg 2520
ttaatttttt tctttttttt ttcttgccct ttccattagt 2580
atttttattt ttttttagag atggagtctc actatgttgc 2640tgggctcaag caatcctcct gcctcagcct ccctagtagc 2700actgtgcctg ctttgaatcc tttacgaaga gaaaaaaaaa 2760
ttatccaatg tttactactg ggattgctta aagtgaggcc 2820
attcctgtga ttgtgaaagg ggctacttcc aaggcatctt 2880agggcacctg agagctggta gagtctgaaa ttagggatgt 2940
aaggtaaaat tgcatccacc attgtttgtg ataccttagg 3000caagggctcc tgttcaatag tggtgttggg gagagagaga 3060
gagtaggagt tgaggtgagg tgaaggaggt gctgggggtg 3120
gggttttgga tcactaattc aaggctcttc tggatgtttc 3180
caatgaggtt tatttttagc tggcccaccc agatacactc 3240
gtacccaaac tcttcttagt ctgaaatctg ctggatttct 3300atccttcgtt ccccagccag cctaggactt cgaatgtgga 3360aacatgtaca ttttatgtaa atatgtgcat atttgtacat 3420aataaacaga caaaacttga aaaa 3464
<210> 107<211> 3344<212> DNA<213> Homo sapiens
<400> 107ggccgtcgttacggcttctttcccctagtgcagttccttaagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgc cgc agcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagcggcctgcctc
gttggccacagggggtagctgagacccaagttcaagtctgc tcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgt ccagc act acccagcCccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggctgagagagtgaagagacagactgaaaggcatcaaacacgggcaatccttccctag
gcgtgggaagacggctgggttgcgagaggcctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacc tcgctctgctgccactgacttctccacgtgtcacattggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctacagcctggctcc
cagctctggggtgtagaacgaagaactctgcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacacac cctgat aggcagttactccaggctctggaccattttgttcaatgggcgttctgttgac
ggagctcgga9ggccggggCcagcttcctgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccCcctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcc tcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctqatgggagatt
gctcccgatc tggggctggg 120ccttctgggt 180cccgcgggtg 240ctgccctgct 300gtggacgcgg 360gtgagcccgg 420ggctcagtgc 480agcaccttcc 540ctgccctcac 600tcctgcacag 660acaacgtcca 720ttggtgccta 780ctgctccagg 840gtgaggggcc 900tgcctgagtg 960cccagtgggg 1020agcggcatct 1080gtggatgttc 1140gtggtggtgg 1200ctcatgtccc 1260ctgaccctga 1320agccagccgg 1380aacagtagct 1440acggtgaggg 1500gaggaggaag 1560gggaccctac 1620gtctgaccca 1680ttagctcatc 1740
82/105
00
00
ttgggggcctcttgaccttt*caccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggact t taattaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttggagccagaataggcctaaggggcctgaagataaaatgatat
ccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagttcctagatttaagaggctcccctaagatccttctgttttta
ccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttttggacaatgaggttgtacccaaacatccttcgttaacatgtacaaataaacaga
t9cggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggta cagaagc caatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattctatttttagctcttcttagtccccagccagttttatgtaacaaaacttga
gctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaaattgtttgtgtggtgttgggtgaaggaggtaaggctcttctggc ccac ccctgaaatctgcctaggacttatatgtgcataaaa
ccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttcagatacactcctggatttctcgaatgtggaatttgtacat
180018601920198020402100216022202280234024002460252025802640270027602820288029403000306031203180324033003344
<210> 108<211> 295<212> PRT<213> Homo sapiens
<400> 108Met Asn Gly Gin Pro Leu Thr Cys Val Val
His
Ser His Pro Gly Leu Leu
Gin Asp Gin
Ala Ser Val
Giu Gly Ala
Arg
Arg
Thr His Ile Val Ser Phe
Gly Leu Glu Asn Leu Trp
Leu Ala Giu
Ile Gly Arg
Pro Pro SerMet Leu Lys
Tyr Asn
Cys
Asp
Ser Glu Giy
Trp Thr Arg Gly Pro Leu
Asp
Pro
Thr
Gly Val Arg
Gly Asp Thr Phe Pro Pro Leu
Phe
Thr Glu His Ser Gly
Ile Tyr Val
Val Thr Val115
Asp Leu Val
Cys100Asp
Val Ser Asn Giu105Gin
Ser Ser Arg Asp Ser Gin110Lys Gin ValVal Leu Asp Glu Asp Ser Gly
125IleSer Ala Ser
130Leu Phe
Val135Val
Val Val Gly Val Ala Ala Leu
Cys Leu beu Val Vai Val Ser Arg Tyr145Arg Arg Lys Ala Gin
165Asn
Met Thr Gin Lys170Leu
Giu Giu Giu Leu175
Leu Thr Arg
Pro Arg Ser195
Giu180Gin
Ser Ile Arg Arg185
His Ser His
Leu Arg Ala205
His Thr Asp190Giu Gly HisPro Giu Glu Ser
200Val Gly
83/ 105
00
Pro
Pro225Thr
Giu
Giu
Asn
Asp210Giu
Gin
Asp
Asn
Gly290
Ser
Gly
Thr
Gin
Gly275Arg
Leu
Arg
Glu
Asp260Thr
Gly
Lys
Ser
Leu245Giu
Leu
His
Ser Ser Cys Ser Val220
Thr Leu Thr Thr Val235
Pro Gly Ser Gly Arg250
Lys Gin Ala Met Asn265
Lys Pro Thr Gly Asn
280
Met
Arg
Al a
His
Gly285
Ser Giu Giu
Giu Ile Giu240
Giu Giu Glu255
Phe Val Gin270Ile Tyr Ile
<210> 109<211> 295<212> PRT<213> Homno sapiens
<400> 109Met Asn Gly1
Gin Asp Gin
Ala Ser Val
Glu Gly Ala
Tyr Asn Trp
Asp Gly Asp
Ilie Tyr Val
Val Thr Val115
Asp Leu Val130
Leu Phe Cys145Arg Arg Lys
Leu Thr Arg
Pro Arg Ser195
Pro Asp Ser210
Pro Giu Gly225Thr Gin Thr
Giu Asp Gin
Giu Asn Gly275
Asn Gly Arg290
Gin
Arg
Arg
Met
Thr
Thr
Cys100Asp
Ser
Leu
Ala
Giu180Gin
Leu
Arg
Glu
Asp260Thr
Gly
Pro5Ile
Gly
Leu
Arg
Leu
His
Val1
Al a
Leu
Gin165Asn
Pro
Lys
Ser
Leu245Glu
Leu Thr Cys Val Val Ser His Pro Gly Leu Leu10
Thr
Leu
Lys
Leu70Gly
Val
Leu
Ser
Val150Gin
Ser
Giu
Asp
Tyr230Leu
Gly
His
Giu
Cys55Asp
Phe
Ser
Asp
Val135Val.
Met
Ile
Giu
Asn215Ser
Ser
Ile
Ile
Asp40Leu
Gly
Pro
Asn
Pro120Val
Val
Thr
Arg
Ser200Ser
Thr
Pro
Lys
Leu25Gin
Ser
Pro
Pro
Giu105Gin
Val
Val
Gin
Arg185Val
Ser
Leu
Gly
Gin265Pro
His
Asn
Giu
Leu
Leu90Phe
Giu
Val
Val
Lys170Leu
Gly
Cys
Thr
Ser250Ala
Thr
Val
Leu
Gly
Pro
Thr
Ser
Asp
Gly
Leu
Tyr
His
Leu
Ser
Thr235Gly
Met
Gly
Ser
Trp
Gin
Ser
Thr
Ser
Ser
Val140Met
Gin
Ser
Arg
Val220Val
Arg
Asn
Asn
Phe
His
Pro
Gly
Giu
Arg
Gly125Ile
Ser
Giu
His
Al a205Met
Arg
Al a
His
Gly285
Leu
Ile
Pro
Vai
His
Asp110Lys
Al a
Arg
Giu
His190Giu
Ser
Glu
Giu
Phe270Ile
Ala
Gly
Pro
Arg
Ser
Ser
Gin
Ala
Tyr
Leu175Thr
Gly
Glu
Ile
Giu255Val
Tyr
Glu
Arg
Ser
Val1
Gly
Gin
Val
Leu
His160Thr
Asp
His
Giu
Giu240Giu
Gin
IleLeu Arg Ala Lys280
His Leu Val295
84/105
<210> 110<211> 295<212> PRT<213> Homo sapiens
<400> 110Met
Gin
Ala
Giu
Tyr
Asp
Ile
Val
Asp
Leu145Arg
Leu
Pro
Pro
Pro225Thr
Glu
Giu
Asn
Asn
Asp
Ser
Gly
Asn
Gly
Tyr
Thr
Leu130Phe
Arg
Thr
Arg
Asp210Giu
Gin
Asp
Asn
Gly290
Gdy
Gin
Val1
Ala
Trp
Asp
Val
Val1115Val
Cys
Lys
Arg
Ser195Ser
Gly
Thr
Gin
Gly275Arg
Gin
Arg
Arg
Met
Thr
Thr
Cys100Asp
Ser
Leu
Ala
Giu180Gin
Leu
Arg
Glu
Asp260Thr
Gly
Pro
Ile
Gly
Leu
Arg
Leu
His
Val1
Al a
Leu
Gin165Asn
Pro
Lys
Ser
Leu245Giu
Leu
His
Leu
Thr
ILeu
Lys
Leu70Gly
Val
Leu
Ser
Val150Gin
Ser
Giu
Asp
Tyr230Leu
Gly
Arg
Leu
Thr
His
Glu
Cys55Asp
Phe
Ser
Asp
Val135Val
Met
Ile
Glu
Asn215Ser
Ser
Ile
Ala
Val295
Cys
Ile
Asp40Leu
Gly
Pro
Asn
Pro120Val
Val
Thr
Arg
Ser200Ser
Thr
Pro
Lys
Lys280
Vali
Leu25Gin
Ser
Pro
Pro
Glu105Gin
Val
Vai
Gin
Arg185Val
Ser
Leu
Gly
Gin265Pro
Val
His
Asn
Giu
Leu
Leu90Phe
Giu
Val
Val1
Lys170Leu
Gly
Cys
Thr
Ser250Al a
Thr
Ser
Val1
Leu
Gly
Pro75Thr
Ser
Asp
Gly
Leu155Tyr
His
Leu
Ser
Thr235Gly
Met
Gly
H isr
Ser
Trp
Gin
Ser
Thr
Ser
Ser
Val140Met
Giu
Ser
Arg
Val220Val
Arg
Asn
Asn
Pro
Phe
His
Pro
Gly
Glu
Arg
Gly125Ile
Ser
Giu
His
Al a205Met
Arg
Ala
His
Gly285
Gly
Leu
Ile
Pro
Val
His
Asp110Lys
Ala
Arg
Glu
His190Giu
Ser
Giu
Giu
Phe270Ile
Leu
Ala
Gly
Pro
Arg
Ser
Ser
Gin
Ala
Tyr
Leu175Thr
Gly
Giu
Ile
Glu255Val1
Tyr
Leu
Giu
Arg
Ser
Val
Gly
Gin
Val
Leu
His160Thr
Asp
His
Giu
Glu240Giu
Gin
Ile
<210> Ill<21i> 3389<212> DNA<213> Homo sapiens
<400> I1*lggccgtcgtt gttggccaca gcgtgggaagacggcttctt gggggtagct acggctgggttcccctagtg gagacccaag tgcgagaggccagttcctta ttcaagtctg cagccggctcgctgggcagt ctgcctttca accatgccccaggcctggct gctgctgctg ctactgctggagctggagac ctcagacgtg gtaactgtggtctaccgagg ggactccggc gagcaagtgg
cagctctggg ggagctcgga gctcccgatc gtgtagaacg gggccggggc tggggctggg 120aagaactctg cagcttcctg ccttctgggt 180ccagggagat ctcggtggaa cttcagaaac 240tgtccctggg agccgagatg tgggggcctg 300catcatttac aggccggtgc cccgcgggtg 360tgctgggcca ggacgcaaaa ctgccctgct 420ggcaagtggc atgggctcgg gtggacgcgg 480
105
00
00
gcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatt tgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaagagcCcgactgaaCtgCttcaaacaggcgcaatggcatcctaggcctgaacacccccacaacccttcttcactgtgtggtgactgtCCcaagtgaactggtttggCgttcagaccccatcagacccaggtctcctacagaggcttgatacatattttcacttttaattttttattttactcctgggcacaccactgttagatttatcggttaattccttgggagggctgagtaaggtggtgacaagEcgagagagtzcccctgggttgagttcaatca'zttagtacCtcc Cat cct
ccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccgggggccgcagtgtctccaggccatgaaccatctacatcaatgctccttctgtttcttgcgggttcatcgggtgtgcatgtggtggaggggtgtggtgtatggtgtgtcatggagcagtattgtgtgcgggCacttcggagcactgttacagctgtaaatatttttttcttttatttttttttcaagcaatcgcctgctttc-caatgtttactgtgattgtcacctgagagcaaaattgcatIgctcctgttcLggagttgaqttggatcactaggtttattt
-caaactcttc
-tcgttccccz
gcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggc cagcgtgacctcgctctgctgccactgacttctccacgtgtcacattggcatacaactggattgggctttcgagt tct Octgggaagc aggttgttctgcccagcagatgaaggctgcatttactccacgctctgggcgggtttgttcagggggcggggacttgacatgggaagatgctccagggctccactgcctgtgtggactgtgtCCtgccacgggatggctgtgtgaatgatgcagatagctggagcatgggggcaaagcctctgacatgcgccgtttttttctttagagatggactcctgcctCaatcctttactactgggatt
jaaaggggctatggtagagtcccaccattgtaatagtggtcItgaggtgaac:aattcaaggc:ttagctggcttagtctgaE
i gccagcctacxtgtaaatatc
i cttgaaaaa
actccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacactgaccacggtccgaggaggaagaatgggacacctggtctgagattttagcccatcccactcaattgagtcagtgttgactgtggtgtgtatttgagtggttgacctctgcaggt tggaggctggaatctgagtgtgaagcccctctggtgggagcttcttgccctttccagtctcactatagcctccctagaagagaaaagcttaaagtg*cttccaaggctgaaattagg*ttgtgataCCIttggggagagIgaggtgctggtcttctggatcacccagatatatctgctgga;gacttcgaatItgcatatttS
cgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccagggagggagataggaagatcagcctacgggccacccaggccttcatcttggggactgcttgatctcccaccagactgtgtgtttatgctgtctgcgtgggcaCt gaaaaagcagagaggtggcctccggtgtagccagtcccgcctctgggcgcaggaatacttagttgtatgttgctcagggtagctgggaaaaaaattaaaggcccctccatcttcatgcgatgtgagccttagggaattagagagcagtgggtgagaatgt tt ctCtggcactcagccat ttCtggcctgtggagcctgtacataaaat
gtgagcccgg 540ggctcagtgc 600agCaCCttCC 660ctgCCCtCaC 720tCCtgcaCag 780aCaacgtcca 840ttggtgccta 900CtgCtCCagg 960gtgaggggCC 1020tgcctgagtg 1080CCCagtgggg 1140agcggcatCt 1200gtggatgttc 1260gtggtggtgg 1320ctcatgtccc 1380Ctgaccctga 1440agCCagagtg 1500gaaacacaga 1560gatgaaggca 1620aagccacgg 1680gCCtcccttC 1740ggcctcctta 1800CctttaCctc 1860tgCatgCagg 1920gtgtggaggg 1980atatcagagt 2040aCactgtcag 2100aggtattttC 2160agaCtgtggC 2220gagggaacct 2280tgggtCagCC 2340ctgCtgCatg 2400tgctccgaat 2460tttttattta 2520ctggCCttga 2580Ctttaagtgt 2640agaaagCctt 2700aacaccaggg 2760aggcagCCCC 2820tCgtggttac 2880gcttggacct 2940gattatagac 3000gtCgCCtttC 3060gttggggctg 3120gaataCCtag 3180aagggagagg 3240aagatCtaag 3300gatattCtgt 3360
3389atCCtaaCat gtacattttttttaaataa acagacaaa~
<210> 112<211> 3464<212> DNA<213> Homo sapiens
<400> 112ggccgtcgttacggcttctttcccctagtgcagttcctta
gttggccaca gcgtgggaag cagctctggg ggagctcgga gctcccgatc gggggtagct acggctgggt gtgtagaacg gggCcggggC tggggctggg 120gagacccaag tgcgagaggc aagaactctg cagcttcctg ccttctgggt 180ttcaagtctg cagccggctc ccagggagat ctcggtggaa Cttcagaaac 240
86/105
00
00
gctgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggcctgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttggagccagaataggcctaaggggcctgaagataaaatgatat
ctgcctttcagctgctgctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctzgtggccctccctcatggggacacttgt cagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggctgagagagtgaagagacagactgaaaggcatcaaacacgggcaatccttccctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagttcctagatttaagaggctcccctaagatccttctgttttta
accatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtcacattggcatacaactggat tgggc ttt cgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctacagcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgcc ccag agc acccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttt tggacaatgaggttgtacccaaacatccttcgttaacatgtacaaataaacaga
tgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacacaccctgataggcagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagatt cgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttt tt tt tagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattctatttttagctcttcttagtccccagccagttttatgtaacaaaacttga
agccgagatgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctgatgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggt ttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaaattgtttgtgtggtgttgggtgaaggaggtaaggctcttctggcccacccctgaaatctgcctaggacttatatgtgcataaaa
tgggggcctgcccgcgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccctgccctcactcctgcacagacaacgtccattggtgcctactgctccagggtgaggggcctgcctgagtgcccagtggggagcggcatctgtggatgttcgtggtggtggctcatgtcccctgaccctgaagccagccggaacagtagctacggtgaggggaggaggaaggggaccctacgtctgacccat tagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttcaga ta cactcctggatttctcgaatgtggaatttgtacat
300360420480540600660720780840900960102010801140120012601320138014401500156016201680174018001860192019802040210021602220228023402400246025202580264027002760282028802940300030603120318032403300336034203464
<210> 113<211> 3389<212> DNA<213> Homo sapiens
87/1
00
00
<400> 113ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaag~ggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaagagcccgactgaactgcttcaaacaggcgcaatggcatcctaggcctgaacacccccacaacccttcttcactgtgtggtgactgtcccaagtgaactggtttggcgttcagaccccatcagacccasgtctcctaccagaggcttgatacatattttcacttttaattttttattttactcctgggcacaccactgttagatttatcggttaattccttgggagggctgagtaaggtggtgacaagcgagagagtzcccctgggttgagttcaatcatttagtac(ctcccatcclatcctaacalttttaaatai
<210> 114
gggggtagctgagacccaagttcaagtctgctgcctttcagctgctgctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccgggggccgcagtgtctccaggccatgaaccatctacatcaatgctccttctgtttcttgcgggttcatcgggtgtgcatgtggtggaggggtgtggtgtatqgtgtgtcatg*gagcagtattIgtgtgcgggCacttcggagcactgttaeag
*ctgtaaatatttttttcttttatttttttttcaagcaatcgcctgctttccaatgtttactgtgattgtcacctgagagcaaaattgcat
Igctcctgttciggagttgag:ttggatcactI aggtttattt
caaactctt(tcgttccccz
-gtacatttti
a acagacaaa
acggctgggttgcgagaggccagccggctcaccatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtcacattggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcatttactccacgctctgggCgggtttgttcagggggcggggact tgacatgggaagatgctccagggctccactgcctgtgtggactgtgtcctgccacgggatggctgtgt~gaatgatgcagatagctggagcatgggggcaaagccctctgacatgcgccgtttttttctttagagatggactcctgcctcaatcctttactactgggatt
faaaggggctatggtagagtcccaccattgtaatagtggtc
Itgaggtgaacaattcaaggcttagctggccttagtctgaa
i gccagcctaci tgtaaatatci cttgaaaaa
gtgtagaacgaagaactctgccagggagattgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggtcccagaaatacccatcacactgaccacggtccgaggaggaagaatgggacacctggtctgagattttagcccatcccactcaattgagtcagtgttgactgtggtgtgtatttgagtggttgacctctgcaggt tggaggctggaatctgagtgtgaagcccctctggtgggagcttcttgccctttccagtctcactatagcctccctagaagagaaaagcttaaagtqLcttccaaggctgaaattagSttgtgatacc
fttggggagacfgaggtgctgstcttctggatcacccagatz
LatctgctggzIgacttcgaatItgcatatttc
gttggccaca gcgtgggaag cagctctggg ggagctcggagggCCggggCcagcttcctgctcggtggaaagccgagatgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggcagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgt cagc ctcgggtggtggtgtgaggaggagggaccc cagggagggagataggaagatcagcctacgggccacccaggccttcatcttggggactgcttgatctcccaccagactgtgtgtttatgctgtctgcgtgggcabtgaaaaagcagagaggtggcctccggtgtagccagtcccgcctctgggCgcaggaatacttagttgtatgttgctcagg
*gtagctggga*aaaaaattaafaggcccctccatcttcatgc
Igatgtgagcc*ttagggaattagagagcagt
Igggtgagaat*gttttCtgicactcagcczLtttctggcctgtggagcctctacataaaat
gctcccgatc tggggctggg 120ccttctgggt 180cttcagaaac 240tgggggcctg 300cccgcgggtg 360ctgccctgct 420gtggacgcgg 480gtgagcccgg 540ggctcagtgc 600agcaccttcc 660ctgccctcac 720tcctgcacag 780acaacgtcca 840ttggtgccta 900ctgctccagg 960gtgaggggcc 1020tgcctgagtg 1080cccagtgggg 1140agcggcatct 1200gtggatgttc 1260gtggtggtgg 1320ctcatgtccc 1380ctgaccctga 1440agccagagtg 1500gaaacacaga 1560gatgaaggca 1620aagcccacgg 1680gcctcccttc 1740ggcctcctta 1800cctttacctc 1860tgcatgcagg 1920gtgtggaggg 1980atatcagagt 2040acactgtcag 2100aggtattttc 2160agactgtggc 2220gagggaacct 2280tgggtcagcc 2340ctgctgcatg 2400tgctccgaat 2460tttttattta 25201ctggccttga 2580ctttaagtgt 2640agaaagcctt 2700aacaccaggg 2760aggcagcccc 2820tcgtggttac 2880gcttggacct 2940gattatagac 300Dgtcgcctttc 3060
1gttggggctg 3120igaatacctag 3180:aagggagagg 3240i aagatctaag 3300
gatattctgt 33603389
88/105
<211> 485<212> PRT
00 S <213> Homo sapiens
<400> 114
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Glu Ala Trp Leu1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly25
Glu Leu Glu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala65 70 75 Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly
90 Arg Val Glu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val
OO 100 105 110S Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Glu Cys ArgS115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu145 150 155 160Glu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Glu Gly Ser
165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Glu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270Glu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300Leu Thr Thr Glu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Glu305 310 315 320Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335Glu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Val Val
340 345 350Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
370 375 380Lys Tyr Glu Glu Glu Leu Thr Leu Thr Arg Glu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Ser Glu Glu Pro Glu
405 410 415Gly Arg Ser Tyr Ser Thr Leu Thr Thr Val Arg Glu Ile Glu Thr Gin
420 425 430Thr Glu Leu Leu Ser Pro Gly Ser Gly Arg Ala Glu Glu Glu Glu Asp
89/105
00
00
435 440 445Gin Asp Glu Gly Ile Lys Gin Ala Met Asn His Phe Val Gin Giu Asn
450 455 460
Gly Thr Leu Arg Ala Lys Pro Thr Gly Asn Gly Ile Tyr Ile Asn Gly
465 470 475 480
Arg Gly His Leu Val
<210> 115<211> 510<212> PRT<213> Homo sapiens
<400> 115Met Pro Leu Ser Leu Gly Ala Giu Met Trp Gly Pro Glu Ala Trp Leu
1 5 10
Leu
Glu
Lys
Val
Leu
Arg
Leu
Val
Val145Glu
Pro
Ser
His
Val225His
Asn
Glu
Leu
Leu305Phe
GIl
Leu I
Leu
Leu I
Ala
Leu
Val
Leu
Ser130Leu
Gly
Ala
Arg
Leu210Ser
Val
Leu
Gly
Pro290Thr
Ser
Asp
ieu
3iu
?ro
rrp
His
31u
Arg115Thr
Val
Gln
Pro
Ser195Val
His
Ser
Trp
Gin275Ser
Thr
Ser
Ser
Leu
Thr
ys
Ala
Ser
Gin100Asn.
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Arg
Gly
Leu
Ser
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Prc
Val
His
Asl32!LyC
Leu
Asp
Tyr
Val70Tyr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gin
kia
Jal
Arg55
Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Val295Gly
Gin
Val
Ser
Val40Gly
Ala
Leu
Pro
Ala120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Val
AsI
Phe25Thr
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu
Chr
lal
Ser
31u
Val90Psn
Glu
Gin
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asp
Val
Val330Val
Gly
Val
Gly
Gly75Ser
Pro
Gly
Ala
Pro155Cys
Val
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Ser
Arg
Leu
Glu
Ala
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Cys
Gly
Gin
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Ser
?ro
3ml
Ja1
Glu
Tyr
Gly110Glu
Arg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Ser
Asp
Val
Ala
Asp
Gly
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
3iy
Ala
Gin
Ala
Gly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
90/105
355 360 365Val Leu Met Ser Arg Tyr His Arg Arg Lys Ala Gin Gin Met Thr Gin
00 30375 380Lys Tyr Giu Glu Glu Leu Thr Leu Thr Arg Giu Asn Ser Ile Arg Arg385 390 395 400Leu His Ser His His Thr Asp Pro Arg Ser Gin Pro Giu Glu Ser Vai
405 410 415Giy Leu Arg Aia Glu Gly His Pro Asp Ser Leu Lys Asp Asn Ser Ser
420 425 430Cys Ser Val Met Ser Glu Glu Pro Giu Giy Arg Ser Tyr Ser Thr Leu
C1435 440 445Thr Thr Val Arg Glu Ile Giu Thr Gin Thr Glu Leu Leu Ser Pro Gly
450 455 460Ser Gly Arg Ala Glu Glu Giu Giu Asp Gin Asp Giu Gly Ile Lys Gin465 470 475 480Aia Met Asn His Phe Val Gin Glu Asn Gly Thr Leu Arg Ala Lys Pro
c1485 490 495Thr Giy Asn Gly Ile Tyr Ile Asn Gly Arg Gly His Leu Val
00500 505 510
<210> 116
<211> 485<212> PRT<213> Homo sapiens
<400> 116Met Pro Leu Ser Leu Gly Ala Giu Met Trp, Gly Pro Giu Ala Trp, Leu1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly25
Giu Leu Giu Thr Ser Asp Vai Val Thr Val Vai Leu Gly Gin Asp Ala40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Glu Gin Val Gly Gin55
Val Ala Trp Ala Arg Val Asp Ala Gly Glu Gly Ala Gin Giu Leu Ala70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly90
Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Glu Gly Glu Tyr Giu Cys Arg115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Giu145 150 155 160Giu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys T)lr Ala Giu Gly Ser
165 170 175Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Gly Thr Thr Ser
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Glu Phe
195 200 205His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Val
210 215 220Val Ser His Pro Gly Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu225 230 235 240His Val Ser Phe Leu Ala Glu Ala Ser Val Arg Gly Leu Glu Asp Gin
245 250 255Asn Leu Trp His Ile Gly Arg Glu Gly Ala Met Leu Lys Cys Leu Ser
91/105
260 265Glu Gly Gin
275Leu Pro Ser
Pro Pro Pro Ser Tyr280Asp
Asn Trp Thr Arg Leu Asp Gly Pro
00
285GlyGly Val Arg
290Leu Thr
Val295Gly
Gly Asp Thr Leu300His
Phe Pro Pro
Thr Glu His Ser310Ser
Ile Tyr Val Cys Val Ser Asn Giu320315
AspSer Ser Arg Gin Val Thr Val Val Leu Asp Pro Gin335
Glu Asp Ser
Val Giy Val355
Val Leu Met
Gly340Ile
Gin Val Asp Leu Ser Ala Ser345PheAla Ala Leu Leu
360Arg
Cys Leu Leu
Val Val Val350Val Val Vai
Met Thr GinSer Arg Tyr370
Lys Tyr
His375Thr
Arg Lys Ala
Glu Giu Giu385Leu
Leu390Thr
Leu Thr Arg Ser Ile Arg Arg400
His Ser His H-is405Ser
Asp Pro Arg Ser410Val
Ser Giu Giu Pro Giu415
Gly Arg Ser
Thr Glu Leu435
Gin Asp Glu
Tyr420Leu
Thr Leu Thr Thr425Gly
Arg Giu Ile
Ser Pro Gly Ser440Al a
Arg Ala Giu Glu
Giu Thr Gin430Giu Glu Asp
Gin Giu AsnGly Ile Lys450
Giv Thr
Gin455Pro
Met Asn His Phe460IleLeu Arg Ala Thr Gly Asn
465Arg
Gly475
Tyr Ile Asn
Gly His Leu Val485
<210> 117<211> 3401<212> DNA<213> Homo sapiens
<400> 117ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcaggccgttccttgccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgat
gttggccacagggggtagctgagaccczaagttcaagtctgctgcctttcagctgctgctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagccccccaagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactc
gcgtgggaagacggctgggttgcgagaggccagccggctcaccatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacctcgctctgctgccactgacttctccacgtgtcacattggcatacaactggattgggctttcgagtt ctC ctgggaagcaggttgttctgcc
cagctctggggtgtagaacgaagaactctgccagggagattgtccctgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatCCgagtgctagggcctgacgggacacggaccgtcacctcgtgtggtgtcccttccttgcgagaaggagcCacggctggaCCCCactgaCcaagggattctggacctagtttctggtggt
ggagctcggagggccggggccagcttcctgctcggtggaaagccgagatgaggccggtgcggacgCaaaaatgggCtCggcgggcttcatccccctggaCgtgccgggtCggtgcctccccctggcagccggtcaaaggCagagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtg
gctcccgatc tggggctggg 120ccttctgggt 180cttcagaaaC 240tgggggcctg 300cccgcgggtg 360ctgccctgct 420gtggacgcgg 480gtgagCCCgg 540ggctcagtgc 600agcacCttCC 660ctgccctCac 720tcctgCaCag 780acaacgtcca 840ttggtgCcta 900ctgctccagg 960gtgaggggCC 1020tgcctgagtg 1080cccagtgggg 1140agcggcatct 1200gtggatgttc 1260gtggtggtgg 1320ctcatgtCCC 1380
92/105
00
00
gataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagccggCCtgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgetaatactgctctgtatttttttcaggctggctgggactttaattaaagaaa.cctccaacaccatgcaggcagagcctcgtggtgattatagatgtcgccttgggttggggccagaatacctctaagggagatgaagatctaatgatattct
gcgcaaggccctccatccggagggctgagagagtgaagagacagactgaa.aggcatcaaa.cacgggcaatccttccctagccttaaacacacetccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccag tgt a ca ccgcctttagatcagggggtta.gccccttgggctggtgacaaaccgagagagtccccctgggtggagttcaaagatttagta9 ct ccc ate
agatcctaacgtttttaaat
cagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctaca.gcctggctccccccatttctcttctgttca.gtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagageacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctggggctcctgttaggagttgattttggatcatgaggtttatcccaaactctcttcgttcecatgtacatttaaacagacaa.
cccagaaata.cccatcacacaccctgataggcagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatcaatagtggggtgaggtgaetaattcaagttttagctggtcttagtctgcagccagccttatgtaaataaaettgaaaa
tgaggaggagggaeeecaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctgatgggagattgctccccatctecaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaatgttggggagaggaggtgctgetet t ctggeccacccagaaaatctgctgaggacttcgatgtgcatatta
ctgaccctgaagccagccggaaeagtagctacggtgaggggaggaggaaggggaccctacgtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtagagagagcagggggtgagaatgtttctcttacactcagcgatttctggcatgtggagcctgtacataaa
1440150015601620168017401800186019201980204021002160222022802340240024602520258026402700276028202880294030003060312031803240330033603401
<210> 118<211> 3464<212> DNA<213> Homo sapiens
<400> 118ggccgtcgttacggcttctttec c tag tgcagttccttagctgggcagtaggcctggctagctggagact ctae cgagggcgaaggcgccttacgagggtcctgcgcaaccgccggeagtgaatcctggctgagggcaggccgttccttgccgcagcatace aaagga tttgaagaccaaagggcagec
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttcagctgctgctgctcagaegtgggactccggceeaggaac taccgcgtggagcgeagtgcagcttceaggcgtecagcactacccagcceeaageacteegaatgggcagcacceacateaaatctgtggccctccetca
gegtgggaagacggctgggttgcgagaggccagccggctcaccatgcccectactgctgggtaactgtgggageaagtgggcgctactgccagccgccgcgcggatgaggeggctgeggegaagagggccagcgtgaeetcgctetgctgceactgacttctccacgtgtcacattggeatacaactgga.
cagctctggggtgtagaacgaagaactctgccagggagattgteeetgggcatcatttactgctgggeeaggeaagtggeacteeaaata.ccceaegeaagegagtacgatccgagtgctagggcctgaegggaeacggaeegtcacctcgtgtggtgteccttccttgcgagaaggagccacggctgga
ggageteggaggecggggceagcttectgetcggtggaaageegagatgaggccggtgcggaegcaaaaatgggctcggcgggcttcatecce tgga egtgccgggtcg gtgectcccectggcagccggtcaaaggeagagttccacccatcetggctgaggcctettatgctcaagtgggcctctg
gctcccgatetgggge tgggccttctgggtcttcagaaactgggggcctgcccgcgggtgctgccctgctgtggacgcgggtgagceeggggetcagtgcag cace tteectgecetcactcctgcacagacaacgtccattggtgectactgctccagggtgaggggectgcctgagtgcccagtgggg
120180240300360420480540600660720780840900960102010801140
93/105
00
00
tacgagtggaacgtctgccattgacccccatgggtgt gatgataccatcgccagggagaaaggagagtgtgctctgtgatagatagaaacatcaggatgagggccaagcggcctgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggczgagcctcgtgaattgcttgcagtgattEagaatgtcg(tctgggt tg~agccagaatggcctaagggcctgaagalaaaatgatal
tggggacact ttgggctttc ctgtcagcaat gagttctcct cggaagactct gggaagcagg tcgccgcactc ttgttctgcctgcgcaaggcc cagcagatgactccatccgg aggctgcattagggctgaga gccgagggccgagtgaagag cccgagggccacagactgaa ctgctgtctcaggcatcaaa caggccatgacacgggcaat ggcatctacaccttccctag gcctggctccccttaaacac ccccatttctacctccaacc cttctgttcagcaggtcact gtgtgtgtgcgaggggtgac tgtccgtggaagagtcaagt gaactgtggtgtcagggttt ggcgtgtgtgttttctcaga ccccagagcagtggctcaga cccaggtgtgaacctgtctc ctaccacttccagccagagg cttgaactgtgcatgtacat attttctgtacgaatcactt ttaatttttt
cttgaactcc tgggctcaagagtgtacacc actgtgcctggcctttagat ttatccaatgcagggggtta attcctgtgagccccttggg agggcacctggttactgagt aaggtaaaatgacctggtga caagggctcctagaccgaga gagtaggagtctttccccct gggttttgga
3 ggctggagtt caatgaggtti cctagattta gtacccaaac3 agaggctccc atccttcgttt ctaagatcct aacatgtacat tctgttttta aataaacaga
~cccactgac~aagggat tc:ggacctagt:tctggtggt:ccagaaata:ccatcacacaccctgatag3cagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactqttgtgaaagsagagctggtatgcatccacctgttcaatactgaggtgagtcactaattctatttttagctcttcttagtccccagccacttttatgtazcaaaacttgz
cactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctgatgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttcgagtctgaaaattgtttgtgItggtgttgggItgaaggaggtaaggctcttctggcccacccctgaaatctgIcctaggacttxatatgtgcatiaaaa
agcggcatct 1200gtggatgttc 1260gtggtggtgg 1320ctcatgtccc 1380ctgaccctga 1440agccagccgg 1500aacagtagct 1560acggtgaggg 1620gaggaggaag 1680gggaccctac 1740gtctgaccca 1800ttagctcatc 1860ccactgactg 1920gagtctctcc 1980tgactgactg 2040gtgtattatg 2100gtggttgcgt 2160tctgcctgaa 2220ggaggagaga 2280atctgcctcc 2340gaagcagcca 2400tggtggcctc 2460ttcttgcagg 2520ttccattagt 2580actatgttyc 2640ccctagtagc 2700gaaaaaaaaa 2760aagtgaggcc 2820aaggcatctt 2880ttagggatgt 2940ataccttagg 3000gagagagaga 3060gctgggggtg 3120tggatgtttc 3180agatacactc 3240ctggatttct 3300cgaatgtgga 3360atttgtacat 3420
3464
<210> 119<211> 3401<212> DNA<213> Homo sapiens
<400> 119ggccgtcgttacggcttctttcccctagtgcagttccttagctgggcagtaggcctggctagctggagactctaccgagggcgaaggcgccttacgagggtcctgcgcaaccgccggcagtgaatcctggctgagggcag
gttggccacagggggtagctgagacccaagttcaagtctgctgcctttcagctgctgctgctcagacgtgggactccggcccaggaactaccgcgtggagcgcagtgcagcttccaggcgtccagcactacccagcccc c
gcgtgggaagacggctgggttgcgagaggccagccggctcaccatgccccctactgctgggtaactgtgggagcaagtgggcgctactgccagccgccgcgcggatgaggcggctgcggcgaagagggccagcgtgacct
cagctctggggtgtagaacgaagaactctgccagggagattgt ccc tgggcatcatttactgctgggccaggcaagtggcactccaaataccccacgcaagcgagtacgatccgagtgctagggcctgacgggacacgga
ggagctcggagggccggggccagcttcctgctcggtggaaagccgagatgaggccggtgcggacgcaaaaatgggctcggcgggcttcatccccctggacgtgccgggtcggtgcctccccctggcagccggtcaaaggc
gctcccgatctggggctgggccttctgggtcttcagaaactgggggcctgcccgcgggtgctgccctgctgtggacgcgggtgagcccggggctcagtgcagcaccttccctgccctcactcctgcacagacaacgtcca
120180240300360420480540600660720780840
94/105
00
00
gccgttcctt.gccgcagcataccaaaggatttgaagaccaaagggcagcctacgagtggaacgtctgccattgacccccatgggtgtgatgataccatcgccagggagaaaggagagtgt.gctctgtgatagatagaaacatcaggatgaggg cc aagc cggcctgcctcttgggggcctcttgacctttcaccatgcat.tgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagac tggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagcctcgtggtgattatagatgtcgccttgggttggggccagaatacctctaagggagatgaagatctaatgatattct
caagcactccgaatgggcagcacccacatcaaatctgtggccctccctcatggggacacttgtcagcaatggaagactctcgccgcactcgcgcaaggccctccatccggagggc tgagagagtgaagagacagactgaaaggcatcaaacacgggcaatccttccctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttgggctggtgacaaaccgagagagtccccctgggtggagttcaaagatttagtaggctcccatcagatcctaacgtttttaaat
cgCtctgctgccactgacttctccacgtgtcacattggcatacaactggattgggctttcgagttctcctgggaagcaggttgttctgcccagcagatgaaggctgcattgccgagggcccccgagggccctgctgtctccaggccatgaggcatctacagcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctggggctcctgttaggagttgattttggatcatgaggtttatcccaaactctcttcgttcccatgtacatttaaacagacaa
ccgtcacctcgtgtggtgtcccttccttgcgagaaggagccacggctggaccccactgaccaagggattctggacctagtttctggtggt.cccagaaatacccatcacacaccctgataggcagttactccaggctctggaccattttgttcaatgggcgttctgttgactgcggaagattcgggagggcatgtgtgcct.ggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtctttttttt.ttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatcaatagtggggtgaggtgactaattcaagttttagctggtct tagt ctgcagccagccttatgtaaataaacttgaaaa
agagttccacccatcctggctgaggcctcttatgctcaagtgggcctctgcactgagcactcaggtcactgtcagcctcgggtggtggtgtgaggaggagggaccccaggtctcaaggaccacgctgaccgcgggccgagtcaggagaatgggacacctgatgggagatt.gctccccatctccaccaattgtgtgagtgttgtccgtggt,cgggat ttgagtgtgtgacctgcagaggtttggagctggagggcaagtgt,ctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggc tact tccgagtctgaaatgttggggagaggaggtgc tgCtcttctggcccacccagaaaatctgctgaggacttcgatgtgcatatta
ttggtgcctactgctccagggtgaggggcctgcctgagtgcccagtggggagcggcatctgtggatgt tcgtggtggtggctcatgtcccctgaccctgaagccagccggaacagtagctacggtgaggggaggaggaaggggaccctacgtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcCtcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtagagagagcagggggtgagaatgtttctcttacactcagcgatttctggcatgtggagcctgtacataaa
90096010201080114012001260132013801440150015601620168017401800186019201980204021002160222022802340240024602520258026402700276028202880294030003060312031803240330033603401
<210> 120<211> 510<212> PRT<213> H-omo sapiens
<400> 120Met Pro Leu Ser Leu Gly Ala Glu
1 5Leu Leu Leu Leu Leu Leu Ala Ser
Glu Leu Glu Thr Ser Asp Val Val
Lys Leu Pro Cys Phe Tyr Arg Gly55
Val Ala Trp Ala Arg Val Asp Ala70
Met Trp Gly Pro Glu Ala Trp Leu
Phe25Thr
Gly Arg Cys
Val Val Leu
Pro Ala Gly
Gin Asp Ala
Val Gly GinAsp Ser Gly Glu
AlaGly Glu Gly Gln Glu Leu
95/105
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly90
00
00
Arg
Leu
Val
Val145Glu
Pro
Ser
His
Val225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Lye385Lei
Gi]
CY
Th
Se~46!Al
Th
Val G
Leu A1
Ser T130Leu V
Gly G
Ala P
Arg S
Leu N210Ser I
Val
Leu
Gly
Pro290Thr
Ser
Asp
Gly
Leu370Tyr
1 His
Leu
Ser
f Thr
450r Gly5
a Met
r Gly
lu
rg15hr
'al
lIn
ro
er
Tal
{is
3er
rrp
Gin275Ser
Thr
Ser
Sex
Val355Met
G1
Se
Ar
Va43!Va.
Ar
As
As
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Arc
G1334(I2A
Se
I Gl
SHit
g Al42
1 Me'51 Ar
g Al
n Hi
Pro I
Ala
Pro I
Pro I
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
i His
Asp325
r Lys
i Ala
c Arg
1 Glu
s His405
a Glu0t Ser
g Glu
a Glu
s Phe485
'ro
Ta1
kla
eu150rhr
rhr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gir
Alz
Ty2
Let39(Th
Gb
G1
Ill
G1r47Va
Pro P
Giln P1
Gly E135Pro c
Leu I
Trp
Ser
Ser I215Leu
Glu
Arg
Ser
Val295Gly
Gin
Val
Leu
His375
i Thr
c Asp
His
Glu
Glu455
u Glu01 Gin
~ro
la.20
er
ier
kla
ksp
krg200Met
Gln
Ala
Glu
Tyr280Asp
Ile
Val
Asy
Let36(Arc
Let
Pr
Pr
Pr44Th:
Gi,
Gi
Arg I105Asp C
Phe C
Leu I
Ala
Thr185Ser
Asn
Asp
Ser
Gly.265Asn
Gly
Tyr
Thr
Leu345Phe
3 Arg
a Thr
Arg
Asp425Glu
0r Gin
u Asp
u Asn
Sn
flu
in
Isn
3erL70lu
k1a
Gly
3Gl
Va1250Ala
Trp
Asp
Val
Val330Val
ys
Lys
Arc
Sei41(Se
GI1
Th~
G1
G149'
Pro L
Gly G
Ala
Pro C155Cys I
Val I
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Ser
Leu
Ala
Glu395Gin
Leu
Arg
r Glu
n Asp475
y Thr0
ieu
flu
Lrg I
fly I
Thr I
.ys
7al
?ro220lie
31y
Leu
Arg
Leu300His
Val
Ala
Leu
Gln380Asn
Pro
Lys
Ser
Leu460Glu
Leu
~sp
Eyr
aeu
?ro
kla
3iy
rhr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Sex
Val365Gir
Sex
Glt
Asl
Tyl44!Let
Gb
Ar
Gly S110Glu C
Arg I
Ala I
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
lie
1 Glu
Asn430Ser
a Ser
Ile
g Ala
er
:ys
Jeu
.eu
fly175rhr
3lu
Cys
lie
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
Ser415Sex
Thi
Prc
Lye
Ly49!
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
Val
Gin
Arg400Val
Ser
Leu
Gly
s Gin480
s Pro
n Gly500
Ile Tyr Ile Asn Gly Arg Gly His Leu Vai505 510
<210> 121<211> 510<212> PRT<213> Homo sapiens
96/105
00
00
<400> 121Met Pro Leu Ser Leu Gly Ala Giu Met Trp Gly Pro Glu Ala Trp Leu
1Leu I
Glu I
Lys I
Val 2
Leu
Arg
Leu
Val
Val145Glu
Pro
Ser
His
Va1225His
Asn
Glu
Leu
Leu305Phe
Glu
Val
Val
Lys385Leu
Gly
Cys
Thr
~eu
eu
ieu
%la
Leu
ial
Leu
Ser130Leu
ly
Ala
Arg
Leu210Ser
Va1
Leu
Gly
Pro290Thr
Sex
Asp
Gl
Leu370Tyi
Hi
Let
Se
Th
Leu
Glu
Pro
Trp
His
Glu
Arg115Thr
Val
Gin
Pro
Ser195Va1
His
Ser
Trp
Gin275Ser
Thr
Ser
Ser
Val355Met
Glu
Ser
i Arg
Val435
r Val
Leu
Thr
Cys
Ala
Ser
Gin100Asn
Phe
Pro
Gly
Ser180Phe
Pro
Pro
Phe
His260Pro
Gly
Glu
Arg
Gly340Ile
Sex
Glu
His
Al42(Met
Arc
5Leu
Ser
Phe
Arg
Lys
Pro
Ala
Pro
Pro
Leu165Val
Lys
Ser
Gly
Leu245Ile
Pro
Val
His
Asp325Lys
Ala
Arg
Glu
His405
I Glu
Ser
Glu
Leu
sp
yr
Val70
Tyr
Pro
Val
Ala
Leu150Thr
Thr
His
Arg
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gin
Ala
Tyr
Leu390Thr
Gl
Glt
Ile
Ala
Val
Arg55Asp 2
Gly i
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Ser215Leu
Glu
Arg
Ser
Vai295Gly
Gin
Val
Leu
His375Thr
Asp
His
Glu
Glu455
3er 1
Jai40
.ly
.la
Leu I
Pro 2
4la l120Ser
Ser
Ala
Asp
Arg200Met
Gin
Ala
Glu
Tyr280Asp
Ile
Val
Asp
Leu360Arg
Leu
Pro
Pro
Pro440Thr
?he55
rhr
ksp
31y
iIis
krg105Asp
Phe
Leu
Ala
Thr185Ser
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
Thr
Arg
Asp425Glu
Gin
10Thr
Val
Ser
Glu
Val90Asn
Glu
Gin
Asn
Ser170Glu
Ala
Gly
Gin
Val250Ala
Trp
Asp
Val
Val330Val
Cys
Lys
Arg
Ser410Sex
Gly
Thr
Gly
Val I
Gly
Gly 2
Ser
Pro I
Gly
Ala 2
Pro155Cys
Val
Ala
Gin
Arg235Arg
Met
Thr
Thr
Cys315Asp
Ser
Leu
Ala
Glu395Gln
Leu
Arg
Glu
~rg
jeu
iu
kla
?ro
4eu
31u
Drg140Gly
rhr
Lys
Val
Pro220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Leu
Gin380Asn
Pro
Lys
Sex
Leu460
Cys
Gly
Gin
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Ser
Val365Gin
Ser
Glu
Asp
Tyr445Leu
Pro
3Gl
Val
31u
Tyr
Gly110Glu
Arg
Ala
Glu
Thr190Ser
Thr
His
Glu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
Ile
Glu
Asn430Ser
Ser
Ala
Asp 2
Gly
Leu
Glu
Ser
Cys
Leu
Leu
Gly175Thr
Glu
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
Ser415Ser
Thr
Pro
3ly
Ala
Gln
Ala
3ly
Val
Arg
Arg
Glu160Ser
Ser
Phe
Val
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
Val
Gin
Arg400Val
Ser
Leu
Gly0
97/105
Ser Gly Arg Ala Giu Giu Glu Giu Asp Gin Asp Glu Gly Ile Lys Gin
465 470 475 480
00 Ala Met Asn His Phe Val Gin Giu Asn Gly Thr Leu Arg Ala Lys Pro
485 490 495
S Thr Gly Asn Gly Ile Tyr Ile Asn Giy Arg Gly His Leu Val
C1500 505 510
S <210> 122<211> 510<212> PRT
<213> Homo sapiens
<400> 122
Met Pro Leu Ser Leu Gly Ala Glu Met Trp Gly Pro Giu Ala Trp Leu
1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly
25
Giu Leu Giu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala
00 35 40
Lys Leu Pro Cys Phe Tyr Arg Giy Asp Ser Gly Giu Gin Val Gly Gin
55
Val Ala Trp Ala Arg Val Asp Ala Gly Giu Gly Ala Gin Giu Leu Ala
70 75
Leu Leu His Ser Lys Tyr Gly Leu His Val Ser Pro Ala Tyr Glu Gly
90
Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Giy Ser Val
100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Giu Gly Giu Tyr Giu Cys Arg
115 120 125
Vai Ser Thr Phe Pro Ala cGiy Ser Phe Gin Ala Ary Leu Arg Leu Arg
130 135 140
Val Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Giu
145 150 155 160
Giu Gly Gin Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Giu Giy Ser
165 170 175
Pro Ala Pro Ser Val Thr Trp Asp Thr Giu Val Lys Giy Thr Thr Ser
180 185 190
Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
195 200 205
His Leu Vai Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Vai
210 215 220
Val Ser His Pro Giy Leu Leu Gin Asp Gin Arg Ile Thr His Ile Leu
225 230 235 240
His Val Ser Phe Leu Ala Giu Ala Ser Val Arg Gly Leu Giu Asp Gin
245 250 255
Asfl Leu Trp His Ile Gly Arg Giu Gly Ala Met Leu Lys Cys Leu Ser
260 265 270
Giu Gly Gin Pro Pro Pro Ser Tyr Asn Trp Thr Arg Leu Asp Gly Pro
275 280 285
Leu Pro Ser Gly Val Arg Val Asp Gly Asp Thr Leu Gly Phe Pro Pro
290 295 300
Leu Thr Thr Giu His Ser Gly Ile Tyr Val Cys His Val Ser Asn Giu
305 310 315 320
Phe Ser Ser Arg Asp Ser Gin Val Thr Val Asp Val Leu Asp Pro Gin
325 330 335
Giu Asp Ser Gly Lys Gin Val Asp Leu Val Ser Ala Ser Val Vai Val
340 345 350
Val Gly Val Ile Ala Ala Leu Leu Phe Cys Leu Leu Val Val Val Val
355 360 365
98/105
Val Leu Met Ser Arg Tyr
00
00
370Tyr
His375Thr
Val eu Mt Se ArgTyr Arg Arg Lys Ala Gin Gin Met Thr Gin
Glu Glu Giu Leu390Thr
Leu Thr Arg Glu395Gin
Ser Ile Arg
His Ser His His405Giu
Asp Pro Arg Ser410Ser
Pro Giu Giu Ser
Gly Leu Arg
Cys Ser Val435
Thr Thr Val
Gly His Pro Asp425Glu
Leu Lys Asp
Ser Giu Glu Pro440Thr
Gly Arg Ser
415Asn Ser Ser430Ser Thr Leu
Ser Pro Giy
Tyr445LeuArg Glu Ile Gin Thr Giu
450Ser Gly Arg Ala Giu Glu Asp Gin
Met Asn His Phe485TIP
Gin Giu Asn Gly490Arg
Asp Giu Gly Ile Lys475Thr Leu Arg Ala Lys
495Gly His Leu Val
510Thr Gly Asn
<210> 123<2ii> 1669<212> DNA
GlyS00
Tyr Ile Asn GlySOS
<213> Homo sapiens
<400> 123gtctgacccattagctcatcccactgactggagtctctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttcagatacactcctggatttctcgaatgtggaatttgtacat
ggcctgcctct tgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggta.ggtggagactggtgtgaggggtCcctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggacttta.attaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttggagccagaata.ggcctaaggggcctgaagataaaatgatat
ccttccctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggct cagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggtta.gccccttggggttactgagtgacctggtgatagaccgaga.ctttccccctggctggagt tcctagatttaagaggctcccctaagatccttctgttttta
gcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgta.ttaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttttggacaatgaggttgtacccaaacatccttcgttaacatgtacaaataaacaga
ttctgttgactgcggaagatt cgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggc tgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattctatttttagctcttcttagtccccagccagttttatgtaa.caaaacttg
atgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatgg agt ct cgcct cagc cttttacgaagaggattgcttaggctacttcegagtctgaaaattgtttgtgtggtgttgggtgaaggaggtaaggctcttctggcccacccctgaaatctgcctaggacttatatgtgcat
120180240300360420480540600660720780
900960102010801140120012601320138014401500156016201669
<210> 124<211> 1669<212> DNA<213> Homo sapiens
99/105
<400> 124gtctgaccca ggcctgcctc ccttccctag gcctggctcc ttctgttgac
00
00
ttagctcatcccactgactggagtct ctcctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagcagccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttcagatacactcctggatttctcgaatgtggaatttgtacat
ttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaat taaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttggagccagaataggcctaaggggcctgaagataaaatgatat
ccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacaccgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagttcctagatttaagaggctcccc taag atcc ttctgttttta
ccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtggcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatttttattttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttttggacaatgaggttgtacccaaacatccttcgttaacatgtacaaataaacaga
tgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgcca.tcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattct att ttt agctcttcttagtccc cagccagttttatgtaacaaaacttg
atgggagatt gctccccatc 120tccaccaatt 180gtgtgagtgt 240tgtccgtggt 300cgggatttga 360gtgtgtgacc 420tgcagaggtt 480tggagctgga 540gggcaagtgt 600ctctgccctc 660cgccgggagc 720ttcttgccct 780atggagtctc 840gcctcagcct 900tttacgaaga 960ggattgctta 1020ggctacttcc 1080gagtctgaaa 1140attgtttgtg 1200tggtgttggg 1260tgaaggaggt 1320aaggctcttc 1380tggcccaccc 1440ctgaaatctg 1500cctaggactt 1560atatgtgcat 1620
1669
<210> 125<211> 1669<212> DNA<213> Homo sapiens
<400> 125gtctgacccat tagctcatcccac tgactggagtc tct cctgactgactggtgtattatggtggttgcgttctgcctgaaggaggagagaatctgcctccgaagc agccatggtggcctcttcttgcaggttccattagtactatgttgcccctagtagcgaaaaaaaaaaagtgaggccaaggcatcttttagggatgtataccttagggagagagagagctgggggtgtggatgtttc
ggcctgcctcttgggggcctcttgacctttcaccatgcattgtgtgtgtgctgtcatatcgggcaacactaaagcaggtaggtggagactggtgtgaggggtccctgggttgggcctgctaatactgctctgtatttttttcaggctggctgggactttaattaaagaaacctccaacaccatgcaggcagagcctcgtggaattgcttggcagtgattaagaatgtcgctctgggttgg
ccttccctagccttaaacacacctccaaccgcaggtcactgaggggtgacagagtcaagtgtcagggtttttttctcagagtggctcagaaacctgtctccagccagagggcatgtacatcgaatcacttatttatttttcttgaactccagtgtacacgcctttagatcagggggttagccccttggggttactgagtgacctggtgatagaccgagactttccccctggctggagtt
gcctggctccccccatttctcttctgttcagtgtgtgtgctgtccgtggagaactgtggtqgcgtgtgtgccccagagcacccaggtgtgctaccacttccttgaactgtattttctgtattaattttttatt t ttatt ttgggctcaagactgtgcctgttatccaatgattcctgtgaagggcacctgaaggtaaaatcaagggctccgagtaggagtgggttttggacaatgaggtt
ttctgttgactgcggaagattcgggagggcatgtgtgcctggggtgactggtatgtgccatcatgtggctgtattaatgacgggcatagcggagccatggtacagaagccaatatacatgtcttttttttttttttagagcaatcctcctctttgaatcctttactactgttgtgaaaggagagctggtatgcatccacctgttcaatagtgaggtgaggtcactaattctatttttagc
atgggagattgctccccatctccaccaattgtgtgagtgttgtccgtggtcgggatttgagtgtgtgacctgcagaggtttggagctggagggcaagtgtctctgccctccgccgggagcttcttgccctatggagtctcgcctcagccttttacgaagaggattgcttaggctacttccgagtctgaaaattgtttgtgtggtgttgggtgaaggaggtaaggctcttctggc ccac cc
12018024030036042048054060066072078084090096010201080114012001260132013801440
100/ 105
agatacactc agccagaata cctagattta gtacccaaac tcttcttagt ctgaaatctg 1500ctggatttct ggcctaaggg agaggctccc atccttcgtt ccccagccag cctaggactt 1560
00 cgaatgtgga gcctgaagat ctaagatcct aacatgtaca ttttatgtaa atatgtgcat 1620atttgtacat aaaatgatat tctgttttta aataaacaga caaaacttg 1669
<210> 126
S <211> 137<212> PRT<213> Homo sapiens
<400> 126Met Arg Arg Glu Leu Leu Ala Gly Ile Leu Leu Arg Ile Thr Phe Asn1 5 10
Phe Phe Leu Phe Phe Phe Leu Pro Phe Pro Leu Val Val Phe Phe Ile25
Tyr Phe Tyr Phe Tyr Phe Phe Leu Glu Met Giu Ser His Tyr Val AlaC135 40
Gin Ala Gly Leu Glu Leu Leu Gly Ser Ser Asn Pro Pro Ala Ser AlaC150 55 00 Ser Leu Val Ala Gly Thr Leu Ser Val His His Cys Ala Cys Phe Giu
70 75 Ser Phe Thr Lys Arg Lys Lys Lys Leu Lys Lys Ala Phe Arg Phe Ile
90 Gin Cys Leu Leu Leu Gly Leu Leu Lys Vai Arg Pro Leu Gin His Gin
100 105 110Gly Val Asn Ser Cys Asp Cys Giu Arg Gly Tyr Phe Gin Gly Ile Phe
115 120 125Met Gin Aia Ala Pro Trp Giu Giy Thr
130 135
<210> 127<211> 510<212> PRT<213> Homo sapiens
<400> 127Met Pro Leu Ser Leu Gly Ala Giu Met Trp Gly Pro Giu Ala Trp, Leu1 5 10
Leu Leu Leu Leu Leu Leu Ala Ser Phe Thr Gly Arg Cys Pro Ala Gly25
Giu Leu Giu Thr Ser Asp Val Val Thr Val Val Leu Gly Gin Asp Ala40
Lys Leu Pro Cys Phe Tyr Arg Gly Asp Ser Gly Giu Gin Val Gly Gin55
Val Ala Trp Ala Arg Vai Asp Ala Gly Glu Gly Ala Gin Glu Leu Ala70 75
Leu Leu His Ser Lys Tyr Giy Leu His Val Ser Pro Ala Tyr Glu Gly90
Arg Val Giu Gin Pro Pro Pro Pro Arg Asn Pro Leu Asp Gly Ser Val100 105 110
Leu Leu Arg Asn Ala Val Gin Ala Asp Giu Gly Giu Tyr Giu Cys Arg115 120 125
Val Ser Thr Phe Pro Ala Gly Ser Phe Gin Ala Arg Leu Arg Leu Arg130 135 140
Vai Leu Val Pro Pro Leu Pro Ser Leu Asn Pro Gly Pro Ala Leu Glu145 150 155 160Glu Giy Gln Gly Leu Thr Leu Ala Ala Ser Cys Thr Ala Giu Giy Ser
165 170 175Pro Aia Pro Ser Val Thr Trp, Asp Thr Giu Val Lys Gly Thr Thr Ser
101/105
180 185 190Ser Arg Ser Phe Lys His Ser Arg Ser Ala Ala Val Thr Ser Giu Phe
00
00
His
Val225His
Asn
Giu
Leu
Leu305Phe
Glu
Val
Val
Lys385Leu
Gly
Cys
Thr
Ser465Ala
Thr
Leu210Ser
Val
Leu
Gly
Pro290Thr
Ser
Asp
Gly
Leu370Tyr
His
Leu
Ser
Thr450Gly
Met
Gly
195VTal
His
Ser
Trp
Gin275Ser
Thr
Ser
Ser
Val355Met
Giu
Ser
Arg
Vai435Val
Arg
Asn
Asn
Pro Ser
Pro Gly
Phe Leu245
His Ile260Pro Pro
Gly Val
Glu His
Arg Asp325
Gly Lys340Ile Ala
Ser Arg
Giu Glu
His His405
Ala Giu420Met Ser
Arg Glu
Ala Glu
His Phe485
Arg
Leu230Al a
Gly
Pro
Arg
Ser310Ser
Gin
Ala
Tyr
Leu390Thr
Gly
Giu
Ile
Glu470Val
200Ser Met215Leu Gin
Giu Ala
Arg Giu
Ser Tyr280
Val Asp295Gly Ile
Gin Val
Val Asp
Leu Leu360
His Arg375Thr Leu
Asp Pro
His Pro
Giu Pro440
Giu Thr455Giu Giu
Gin Giu
Asn
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
Thr
Arg
Asp425Giu
Gin
Asp
Asn
Gly505
Gly Gin
Gin Arg235
Val Arg250Ala Met
Trp Thr
Asp Thr
Vai Cys315
Val Asp330Val Ser
Cys Leu
Lys Ala
Arg Giu395
Ser Gin410Ser Leu
Gly Arg
Thr Giu
Gin Asp475
Gly Thr490Arg Gly
Pro220Ile
Giy
Leu
Arg
Leu300His
Vai
Ala
Leu
Gin380Asn
Pro
Lys
Ser
Leu460Glu
Leu
His
205Leu
Thr
Leu
Lys
Leu285Gly
Val
Leu
Ser
Val365Gin
Ser
Giu
Asp
Tyr445Leu
Giy
Arg
Leu
Thr
His
Giu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
Ile
Giu
As n430Ser
Ser
Ile
Ala
Val510
Cys
Ile
Asp255Leu
Gly
Pro
Asn
Pro335Val
Val
Thr
Arg
Ser415Ser
Thr
Pro
Lys
Lys495
Val
Leu240Gin
Ser
Pro
Pro
Giu320Gin
Val
Val1
Gin
Arg400Val
Ser
Leu
Gly
Gin480Pro
Ilie Tyr Ile Asn
<210> 128<211> 295<212> PRT<213> Homo sapiens
<400> 128Met Asn Gly Gin Pri
1 Gin Asp Gin Arg Ill
Ala Ser Vai Arg Gi,
Glu Gly Ala met Le,
Tyr Asn Trp Thr Ar.
Asp Gly Asp Thr Le
Leu
Thr
Leu
Lys
Leu70Gly
Thr
His
Giu
Cys55Asp
Phe
Ser
Val
Leu
Gly
Pro
Thr
His
Ser
Trp
Gin
Ser
Thr
Gly
Leu
Ile
Pro
Vai
His
102/105
00
00
Ile
Val1
Asp
Leu145Arg
Leu
Pro
Pro
Pro225Thr
Glu
Giu
Asn
Val1
Val1
115Val1
Cys
Lys
Arg
Ser195Ser
Gly
Thr
Gin
Gly275Arg
Cys100Asp
Ser
Leu
Al a
Glu180Gin
Leu
Arg
Giu
Asp260Thr
Gly
His
Val
Al a
Leu
Gin165Asn
Pro
Lys
Ser
Leu245Glu
Leu
His
Val1
Leu
Ser
Val150Gin
Ser
Glu
Asp
Tyr230Leu
Gly
Arg
Leu
Ser
Asp
Val135Val
Met
Ile
Giu
Asn215Ser
Ser
Ile
Ala
Vai295
Giu
105Gin
Val
Val1
Gin
Arg185Val
Ser
Leu
Gly
Gin265Pro
90Phe
Giu
Val1
Val1
Lys170Leu
Gly
Cys
Thr
Ser250Al a
Thr
Ser
Asp
Gly
Leu155Tyr
His
Leu
Ser
Thr235Gly
Met
Gly
Her
Ser
Val140Met
Giu
Ser
Arg
Vai220Val
Arg
Asn
Asn
Arg
Gly125Ile
Ser
Giu
His
Ala205Met
Arg
Al a
His
Gly285
Ser
Gin
Al a
Tyr
Leu175Thr
Gly
Giu
Ile
Giu255Val
Tyr
Gin
Val1
Leu
His160Thr
Asp
His
Glu
Glu240Glu
Gin
Ile
<210> 129<2i1> 485<212> PRT<213> Homo sapiens
<400> 129Met Pro Leu Her Leu
1 5Leu Leu Leu Leu Leu
Giu Leu Giu Thr Ser
Lys Leu Pro Cys Phe
Val Ala Trp Ala Arg
Leu Leu His Her Lys
Arg Val Glu Gin Pro100
Leu Leu Arg Asn Ala115
Val Ser Thr Phe Pro130
Val Leu Val Pro Pro145Glu Gly Gin Gly Leu
165Pro Ala Pro Her Val
180Ser Arg Ser Phe Lys
Gly Ala Giu Met Trp Gly Pro Giu Ala Trp Leu10
Leu
Asp
Tyr
Vai
Tyr
Pro
Val
Al a
Leu150Thr
Thr
His
Ala
Val
Arg5
Asp
Gly
Pro
Gin
Gly135Pro
Leu
Trp
Ser
Phe25Thr
Asp
Gly
His
Arg105Asp
Phe
Leu
Ala
Thr185Ser
Thr
Val1
Ser
Glu
Val90Asn
Glu
Gin
Asn
Ser170Glu
Al a
Arg
Leu
GiuG0Ala
Pro
Leu
Glu
Arg140Gly
Thr
Lys
Val
Cys
Gly
Gin
Gin
Ala
Asp
Tyr125Leu
Pro
Ala
Gly
Thr
Pro
Gin
Val
Giu
Tyr
Gly110Giu
Arg
Ala
Giu
Thr190Ser
Ala
Asp
Gly
Leu
Glu
Her
Cys
Leu
Leu
Gly175Thr
Glu
103/1105
1
His Leu Val Pro Ser Arg Ser Met Asn Gly Gin Pro Leu Thr Cys Vai
00
00
Val225His
Asn
Glu
Leu
Leu305Phe
Glu
Va1
Val
Lys385Leu
Gly
Thr
Gin
Gly465Arg
10er
lal
Leu
31y
Pro290Thr
Ser
Asp
Gly
Leu370Tyr
His
Arg
Glu
Asp450Thr
His I
Ser I
Trp I
Gin275Ser
Thr
Ser
Ser
Val355Met
Glu
Ser
Ser
Leu435Glu
Leu
?ro
?he
lis
260Pro
3ly
Glu
Arg
Gly340Ile
Ser
Glu
His
Tyr420Leu
Gly
Arg
Gly
Leu245Ile
Pro
Val
His
Asp325Lye
Ala
Arg
Glu
His405Ser
Ser
Ile
Leu230Ala
Gly
Pro
Arg
Ser310Ser
Gin
Ala
Tyr
Leu390Thr
Thr
Prc
LyE
215Leu
Glu
Arg
Ser
Val295Gly
Gin
Va1
Leu
His375Thr
Asp
Leu
Gly
Gin455
G1n
Ala
lu
Tyr280Asp
Ile
Vai
Asp
Leu360Arg
Leu
Pro
Thr
Ser440Ala
Asp
Ser
Gly265Asn
Gly
Tyr
Thr
Leu345Phe
Arg
Thr
Arg
Thr425Gly
Met
Gin
Val250Ala
Trp
Asp
Val
Val330Val
ys
Lys
Arg
Ser410Val
Arg
Asn
Arg235Arg
Met
Thr
Thr
cys315Asp
Ser
Leu
Ala
Glu395Gin
Arg
Ala
His
220Ile
Gly
Leu
Arg
Leu300His
Val
Ala
Leu
Gin380Asn
Ser
Glu
Glu
Phe460
rhr
Leu
Lys
Leu285Giy
Val
Leu
Ser
Val365Gin
Ser
Glu
Ile
Glu445Val
His
Glu
Cys270Asp
Phe
Ser
Asp
Val350Val
Met
Ile
Glu
Glu430Glu
Gin
Ile
ksp255Leu
2 1y
Pro
Asn
Pro335Val
Vai
Thr
Arg
Pro415Thr
Glu
Glu
Leu240Gin
Ser
Pro
Pro
Glu320Gin
Val
Val
Gin
Arg400Glu
Gln
Asp
Asn
I Ala Lys Pro Thr Giy Asn Gly470 475
Val485
Ile Tyr Ile Asn Gly480
Gly His Leu
<210> 130<211> 137<212> PRT<213> Homo sapiens
<400> 130Met Arg Arg Glu Leu
1 5Phe Phe Leu Phe Phe
Tyr Ple Tyr Phe Tyr
Gin Ala Gly Leu lu
Ser Leu Val Ala Gly
Ser Phe Thr Lys Arg
Gin Cys Leu Leu Leu100
Gly Val Asn Ser Cys
Leu Ala
Phe Leu
Phe Phe
Leu Leu55
Thr Leu70Lys Lye
Gly Leu
Asp Cys
Gly Ile
Pro Phe25
Leu Glu40Gly Ser
Ser Val
Lys Leu
Leu Lys105
Glu Arg
Leu Leu10Pro Leu
Met Glu
Ser Asn
His His75
Lye Lys90Val Arg
Gly Tyr
Arg Ile
Val Val
Ser His
Pro Pro
Cys Ala
Ala Phe
Pro Leu
Phe Gin
Thr
Phe
Tyr
Ala
Cys
Arg
Gin110Gly
PheisPhe
Val
Ser
Phe
Phe
His
Ile
Asn
Ile
Ala
Ala
Glu
Ile
Gin
Phe
104/105