Couture Curricula - BD2K Data Science Tailored to Your Needs

WilliamHersh1,DavidA.Dorr1,2,MelissaHaendel1,3,NicoleVasilevsky1,3,BjornPederson1,JackieWirz1,3,ShannonMcWeeney1

1DepartmentofMedicalInformaticsandClinicalEpidemiology,2DepartmentofMedicine,3OntologyDevelopmentGroup,LibraryOregonHealth&ScienceUniversity,Portland,OR

Students felt the course

AcknowledgementsThisworkissupportedbyNIHGrants1R25EB020379-01and1R25GM114820-01.

Skills Course TopicsWhy?

Course Offerings

Defining The Problem Wrangling Data

Methods, Tools And Analysis

Scientific Communication

Data Identification And Resources

…

?v  Problemsamenableto

analyticsv  Importanceofquestionv  Teamde\initionsv  Scopev  Whenwedothiswrong:

methodsdon'tmatch

v  Findingtherightdatav  Searchmethods

v  Useofmetadatav  Datamanagement

v ExploratoryDataAnalysisv DataDictionaryv Asyoutouchdata,whatcangowrong?

v  Visualizationv Matchingalgorithmstoproblems

v  ReportingFindingsandLimitationsv  Giving“ElevatorSpeech”onideasof

howtoapproachproblemv  Critiqueofrelatedproblem

Majorchallenge:howtomanage,analyzeandinterpretvastamountsofdatabeinggeneratedinbiomedicalresearchOnegoalofNIHBigDatatoKnowledge(BD2K)initiative:providetrainingforstudentsandresearcherstoaddressthisResearchteamintheDepartmentofMedicalInformaticsandClinicalEpidemiology(DMICE)isdevelopingskillscourses

Approach

IntroCourse

DataAfterDark

OERsandcoursesconnectthedotsthathelpresearchersunderstandhowtoapplydatasciencetechniquesinthecontextoftheirwholeresearchlifecycle

§  SkillscourseandOERtopicsareaimedto\illspeci\icgaps

§  Teachingstudentshowtoaskthequestionandfollowthrough

① DevelopOpenEducationalResources(OERS)

② TeachSkillsCourses

19|Semanticdatainteroperability20|SemanticWebdata21|Context-basedselectionofdata22|TranslatingtheQuestion23|ImplicationsofProvenanceand

Pre-processing24|Datatellsastory25|ChoiceofAlgorithmsand

AlgorithmDynamics26|StatisticalSigni\icance,P-hacking

andMultiple-testing27|DisplayingCon\idenceand

Uncertainty28|VisualizationandInterpretation29|Replication,Validationandthe

spectrumofReproducibility30|RegulatoryIssuesinBigDatafor

GenomicsandHealth31|Hostingdatadisseminationand

datastewardshipworkshops32|Guidelinesforreporting,

publications,anddatasharing

OER Modules

ChallengesScope

Images

Style

Dissemination

Howtoscopegenericcurriculafordifferentlevelsofusers

Howtotranslatediverseteachingstylesintogeneralmaterials

Howtomaximizedisseminationwhileprotectingintellectualproperty

Howtoincorporateimagesandothercopyrightedmaterialsintoopenresources

Available at:http://skynet.ohsu.edu/bd2k

AdvancedCourse

§  WeeklongcourseinSummer2015§  Offeredtointernsandundergraduates§  Taughtbasicsofdatascienceinthecontextoftheresearchlifecycle

§  Two-eveningcourseinJanuary2016§  OfferedtoOHSUstudents,staffandfaculty§  Taughtbasicsofdatascience

§  Four-eveningcoursetobeofferedinMay2016

§  OfferedtoOHSUstudents,staffandfaculty§  Teachadvancedtopicsinofdatascience

01|BiomedicalBigDataScience02|IntroductiontoBigDatainBiology

andMedicine03|EthicalIssuesinUseofBigData04|TerminologyofBiomedical,

Clinical,andTranslationalResearch

05|ComputingConceptsforBigData06|ClinicalDataandStandards

RelatedtoBigData07|BasicResearchDataStandards08|PublicHealthandBigData09|TeamScience10|SecondaryUse(Reuse)ofClinical

Data11|PublicationandPeerReview12|InformationRetrieval13|Versioncontrolandidenti\iers14|Dataannotationandcuration15|Dataandtoolslandscape16|Ontologies10117|Datamodeling18|Datametadataandprovenance

Couture Curricula - BD2K Data Science Tailored to Your Needs