WRF & WPS: Compile - Beijing Normal Universityglobalchange.bnu.edu.cn/atmos/ch06s3 - Compile WRF...

WRF&WPS:Compile

KellyWernerNCAR/MMMJanuary2017

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InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniIal/BCdatasets

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SystemRequirements

•  OnwhatkindsofsystemswillWRFrun?–  Generallyany32-or64-bithardware,runningaUNIX-likeoperaIngsystem

–  Youmayalsousedual-booIngintoaUNIX-likeOS(e.g.,WindowswithLinuxbuiltparallel)

•  Examplesofacceptablesystems:–  Laptops,desktops,andclustersrunningLinux–  LaptopsanddesktopsrunningMacOSX–  ClustersrunningUnix-like:Linux,AIX

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CheckSystemRequirements•  Webpage:

h_p://www2.mmm.ucar.edu/wrf/OnLineTutorial/compilaIon_tutorial.php

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CheckSystemRequirements•  ItismandatorytohaveaFortran(e.g.,

gfortran)compiler,aCcompiler,andcpponyoursystem.Totestwhethertheseexistonyoursystem,type:–  whichgfortran–  whichcpp–  whichgcc–  Ifinstalled,youwillbegivenapathfor

each

•  Fortrancompilershouldbeversion4.4.0,orlater

Checkthisbytyping(forcsh):gcc -–version •  Testsavailableforcheckingthatyour

fortrancompilerisbuiltproperly,andthatitiscompaIblewiththeCcompiler.

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AddiIonalNecessaryRequirements

•  ScripInglanguages(tesIngavailableintestpackage): csh perl sh

•  UNIXcommands:ar head sed awkhostname sleep cat lnsort cd ls tarcp make touch cutmkdir tr expr mvuname file nm wcgrep prine which gziprm

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InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniIal/BCdatasets

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InstallingLibraries

•  NetCDF(neededbyWRFandWPS)–  netCDFVersion3or4areacceptable

•  OpIonallibrariesforGRIB2meteorologicaldatasupport–  JasPer(JPEG2000“lossy”compressionlibrary)–  PNG(“lossless”compressionlibrary)–  Zlib(compressionlibraryusedbyPNG)

•  OpIonalMPIlibrary(forbuildinginparallel):

–  MPICH2

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InstallingLibraries

•  InstallaIonoftheselibraries(MPICH2,NetCDF,JasPer,zlib,andlibpng)isNOTpartoftheWPSandWRFinstallaIonscripts

•  VERYIMPORTANT!–  Makesuretheselibrariesareinstalledusingthesame

compilersaswillbeusedtoinstallWRFandWPS

•  Downloadsforthelibraries,withinstallaIoninstrucIons,andlibrarycompaIbilitytestsarealsoincludedonthecompilaIonwebsite

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InstallingLibraries:NetCDF

setenv DIR directory-where-your-tar-files-are setenv CC gcc setenv CXX g++

setenv FC gfortran setenv FCFLAGS –m64 # FCFLAGS may be needed on some systems setenv F77 gfortran

setenv FFLAGS –m64 # FFLAGS may be needed on some systems

tar xzvf netcdf-4.1.3.tar.gz # no ‘.gz’ if downloaded to most Macs cd netcdf-4.1.3

./configure –-prefix=$DIR/netcdf –-disable-dap --disable-netcdf-4 -– disable-shared make

make install setenv PATH $DIR/netcdf/bin:$PATH setenv NETCDF $DIR/netcdf cd ..

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InstallingLibraries:MPICH2•  Inprinciple,anyimplementaIonoftheMPI-2standardshould

workwithWRF;however,wehavethemostexperiencewithMPICH

•  AssumingenvironmentvariablesfornetCDFinstallarealreadyset:

tar xzvf mpich-3.0.4.tar.gz # no ‘.gz’ if downloaded to most Macs cd mpich-3.0.4 ./configure –-prefix=$DIR/mpich

make make install setenv PATH $DIR/mpich/bin:$PATH cd ..

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InstallingLibraries:zlib•  AssumingenvironmentvariablesfromnetCDFinstallare

alreadyset:

tar xzvf zlib-1.2.7.tar.gz # no ‘.gz’ if downloaded to most Macs cd zlib-1.2.7 ./configure –-prefix=$DIR/zlib make

make install cd ..

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InstallingLibraries:libpng•  AssumingenvironmentvariablesfromnetCDFinstallare

alreadyset

tar xzvf libpng-1.2.50.tar.gz # no ‘.gz’ if downloaded to most Macs cd libpng-1.2.50 ./configure –-prefix=$DIR/libpng make

make install cd ..

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InstallingLibraries:JasPer•  AssumingenvironmentvariablesfromnetCDFinstallare

alreadyset

tar xzvf jasper-1.900.1.tar.gz # no ‘.gz’ if downloaded to most Macs cd jasper-1.900.1 ./configure –-prefix=$DIR/jasper make

make install cd ..

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InstallingLibraries:CompaIbility

•  MakesurelibrariesarecompaIblewithcompilers

•  Test1–  Fortran+C+netCDF

•  Test2–  Fortran+C+netCDF+MPI

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InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniIal/BCdatasets

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DownloadWRF&WPSCode•  DownloadWRF&WPSsourcecodefrom:

h_p://www2.mmm.ucar.edu/wrf/users/download/get_source.html–  Click‘NewUser,’registeranddownload,or–  Click‘ReturningUser,’enteryouremail,anddownload

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Step1:Clickhereforthelatest

releasedcode(recommended)

Step2:Clickontarfilesto

download

DownloadStaIcGeographicalData•  FromtheWRFDownloadpage:

h_p://www2.mmm.ucar.edu/wrf/users/download/get_sources.html

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Step1:Click‘WPS’box

Step2:Click‘here’togetgeographydata

DownloadStaIcGeographicalData•  GeographicalInputandDataDownloadPage: h_p://www2.mmm.ucar.edu/wrf/users/download/get_sources_wps_geog.html

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geog.tar.gz~15GBwhenuncompressed

Thisistheoneyouwant

InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniIal/BCdatasets

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ChoosingaCompiler

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Compiler CompileTime RunTime

GNU4.8.2**FREE**

12.63Mins 4.18Mins

Intel12.1.5 27.75Mins 3.88Mins

PGI13.3-0 24.86Mins 4.25Mins

*Compile:dmpar/nesIng,nolarge-filesupport

*Run:singledomain,smalldomain(74x61),6hours,16processors

Step1:ConfigureforWRFV3•  InsidetheWRFV3/directory,type:./configure

checking for perl5... no checking for perl... found /usr/bin/perl (perl) Will use NETCDF in dir: /usr/local/netcdf PHDF5 not set in environment. Will configure WRF for use without. configure: WRF operating system set to "Linux" via environment variable $WRF_OS configure: WRF machine set to "i686" via environment variable $WRF_MACH $JASPERLIB or $JASPERINC not found in environment, configuring to build without grib2 I/

O... ------------------------------------------------------------------------ Please select from among the following supported platforms. 1. Linux i486 i586 i686, gfortran compiler with gcc (serial) 2. Linux i486 i586 i686, gfortran compiler with gcc (smpar) 3. Linux i486 i586 i686, gfortran compiler with gcc (dmpar) 4. Linux i486 i586 i686, gfortran compiler with gcc (dm+sm) 5. Linux i486 i586 i686, g95 compiler with gcc (serial) 6. Linux i486 i586 i686, g95 compiler with gcc (dmpar) 7. Linux i486 i586 i686, PGI compiler with gcc (serial) 8. Linux i486 i586 i686, PGI compiler with gcc (smpar) 9. Linux i486 i586 i686, PGI compiler with gcc (dmpar) 10. Linux i486 i586 i686, PGI compiler with gcc (dm+sm) 11. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial) 12. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar) 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar) 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm) Enter selection [1-16] :

Compile for nesting? (1=basic, 2=present moves, 3=vortex following) [default 1]:

•  OutputfromconfiguraIon:afilecalled‘configure.wrf’

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ConfigureOpIonsforWRFV3

DebuggingOp7ons

•  ./configure –d –  NoopImizaIon–  Extradebugging

•  ./configure –D –  NoopImizaIon–  ChecksuniniIalizedvariables,

floaIngpointtraps,etc.–  Usefulforadding/updaIngnew

code

•  ./configure –r8 –  DoubleprecisionforIntel,GNU,and

PGI

LargeFileSupport•  setenv WRFIO_NCD_LARGE_FILE_SUPPORT 1

->2GB-  Beforeconfiguring-  Built-insinceV3.9

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ParallelCompileOpIonforWRFV3

•  TobuildWRFinparallel– setenvJ“-j2”

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#ofProcessors TimetoCompiler

1 22.8Mins

2 14.92Mins

3 9.33Mins

4 8.02Mins

5 7.23Mins

6 6.68Mins

*Around4processors,itreachesstateofequilibrium

*ThistestdonewithGNUcompiler

configure.wrfFile:UsefulTips

•  NETCDFPATH:internallysetbybuildsystembasedon$NETCDF

•  PNETCDF=Foruserswhohaveaccesstoparallelnetcdf,usetheenvironmentvariablePNETCDFidenIcallytohowNETCDFisset(pointtothePNETCDFtop-leveldirectory)

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Step2:CompileWRFV3

•  IntheWRFV3/directory,type:./compile em_case >& log.compile Whereem_caseisoneofthefollowing(type./compile toseeallopIons)em_real (3drealcase) em_hill2d_x em_quarter_ss em_squall2d_x em_b_wave em_squall2d_y em_les em_grav2d_x em_heldsuarez em_seabreeze2d_x em_tropical_cyclone em_convrad em_scm_xy (1dideal)

**CompilaIonshouldtake~30mins**

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3dIdeal

2dIdeal

Importantincasetherearecompileproblems

SuccessfulCompilaIon•  IfthecompilaIonissuccessful,youshouldfindtheseexecutables

inWRFV3/main (non-zerosize):

Realdatacase: wrf.exe - modelexecutable real.exe – realdatainiIalizaIon ndown.exe –one-waynesIng tc.exe –fortcbogusing(serialonly)

Idealcase:

wrf.exe–modelexecutable ideal.exe–idealcaseiniIalizaIon

*Note:Eachidealcasecompilecreatesadifferentexecutable,butwiththesamename

•  Theseexecutablesarelinkedto2differentdirectories(WRFV3/runandWRFV3/test/em_real).YoucangotoeitherplacetorunWRF.

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UnsuccessfulCompilaIon

•  Useyour‘log.compile’filetosearchforerrors!–  Searchfor‘Error’withacapital‘E’

•  UseourFrequentlyAskedQuesIonswebpageforhelp–  www2.mmm.ucar.edu/wrf/users/FAQ_files/FAQ_wrf_intallaIon.html

•  Beforerecompiling:–  issuea‘clean–a’–  Reconfigure:Ifyouneedtomakechangestotheconfigure.wrffile,do

thisa{erissuing./configure,andthensavetheeditedfile.–  Recompile

•  Contactwr|elp@ucar.edu

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InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniIal/BCdatasets

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Step1:ConfigureforWPS

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•  InsidetheWPS/directory,type:./configure

•  ChoosetocompileWPSserially,evenifyoucompileWRFV3inparallel(unlessyouhaveaverylargedomain)**NOTE:ifyoudocompileWPSinparallel,ungrib.exemustrunserially

•  OutputfromconfiguraIon:afilecalled‘configure.wps’

Step2:CompileWPS

•  IntheWPS/directory,type:./compile >& log.compile

•  CompilaIonshouldonlytakeafewminutes

•  Ifsuccessful,theseexecutablesshouldbeinyourWPS/directory(andtheyarelinked,respecIvely,fromtheirsourcecodedirectories):

geogrid.exe -> geogrid/src/geogrid.exe ungrib.exe -> ungrib/src/ungrib.exe metgrid.exe -> metgrid/src/metgrid.exe

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UnsuccessfulWPSCompilaIon

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Nogeogrid.exeormetgrid.exe

–  WPSmakesuseoftheexternalI/OlibrariesintheWRFV3/external/directory-ThelibrariesarebuiltwhenWRFisinstalled

–  Checkthatyouusedtheexactsamecompiler(andversion)asyouusedtocompileWRFV3

–  CheckthatyouareusingthesamenetCDFthatyouusedtobuildWRFV3

–  HaveyouchangedthenameorpathoftheWRFV3/directory?•  Ifso,youneedtochangethefollowinglineintheconfigure.wpsfile:

WRF_DIR=../WRFV3•  Savethefileandrecompile

UnsuccessfulWPSCompilaIon

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Noungrib.exe

– Makesureyouhaveinstalledyourjasper,zlib,andlibpnglibrariescorrectly.

– Makesurethatyouareusingthecorrectpathandformatforthefollowinglinesintheconfigure.wpsfile

COMPRESSION_LIBS=-L/${DIR}/UNGRIB_LIBRARIES/lib–ljasper–lpng–lzCOMPRESSION_INC=-I/${DIR}/UNGRIB_LIBRARIES/include

Saveconfigure.wpsandrecompile

./clean-a

•  The‘./clean–a’commandissomethingthatshouldbeusedwhenyouhavemadecorrecIonstoyourconfigure.wrffile,configure.wpsfile,oranychangestotheregistry.Ifyouhavemadeanyofthesechanges,orifyouplantorecompileyourcodefromscratch,youmustissuea‘clean–a’beforerecompiling.

•  IfyoumadeanychangestoanysubrouIneswithinthecode,youwillneedtorecompileyourcode,butyoudoNOTneedtoissuethe‘clean–a’command,nordoyouneedtoreconfigure.Youwillsimplyjustrecompile.ThiscompilaIonshouldtakealotlessImethanacleancompile.

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InstallingSteps

•  Checksystemrequirements•  Installinglibraries•  Downloadsourcedata•  CompileWRFV3•  CompileWPS•  DownloadiniNal/BCdatasets

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DownloadDatasets•  FromtheWRFUsers’page:h_p://www2.mmm.ucar.edu/wrf/users/

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Step1:ClickDownload,thenscrolldownandclick‘InputDatafromNCAR’

Step2:Clickthedatasetyouwishtouse(forthisexample,wewilluse‘FNLfromGFS’)

*Note:TheNOMADSsitehasseveraltypesofusefuldata:h_p://nomads.ncdc.noaa.gov

DownloadDatasets(conInued)

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Step3:Register,orsignin,ifyoualreadyhaveanaccount

Step5:Click‘WebFileLisIng’forthespanofyearsyouneed

Step4:Click‘DataAccess’

DownloadDatasets(conInued)

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Step6:Click‘CompleteFileList’

Step7:Clicktheyearyouneed.A{erthis,Youwillclickthemonthyouneed(notshown)

DownloadDatasets(conInued)

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Step8:ClickaboxforeachImespanthatyouneed

Step9:OnceyouhavechosenAllyourImes,clickonthe‘ViewSelectedFiles/GetAsaTarFile’bu_onTodownloadonetarfilewithallyourDates/Imes

QuesIons?

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