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How to use GEO. Ka-Lok Ng Department of Bioinformatics Asia University Taiwan. GEO datasets. Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo. GSE8351. GSE, GPL, GSM. GPL. GSM. GPL5452 – view full table. 67 samples - mainly HCC samples. - PowerPoint PPT Presentation
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How to use GEO
Ka-Lok NgDepartment of BioinformaticsAsia UniversityTaiwan
GEO datasets Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo
GSE8351
GSE, GPL, GSM
GSM
GPL
GPL5452 – view full table
67 samples - mainly HCC samples
G000002 0.065540587 G000003 0.053925988 G000004 0.031904168
Search GEO datasets for “GSE3536”
Title : Hepatoma cell lines vs. Universal control 3
GSE3536
GPL2913 – view full table
36 samples
GEO Profiles - http://www.ncbi.nlm.nih.gov/
Step1:選擇 GEO Profiles
Step2:在此鍵入你所想收尋之關鍵字如 :
GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession )
Search result
可點進去看 tissue分佈
查詢後，有些得出許多結果，依user 所要的資料去選擇，用基因所對應的 NM編號來選。
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