FlowJo 中文实用手册

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the chinese version of Flowjo guide, simple but straight forward, explaning the basic of how to use Flowjo, like gating and backgating, worksheet, table and compensation etc.

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  • I FlowJo support@flowjochina.com 400-680-5527

    FlowJo FlowJo7.6.5 2012/06/20

    FlowJo ......................................................................................................................................1 FlowJo ...............................................................................................................1 FlowJo(Windows) .........................................................................................................1 FlowJo ...............................................................................................................................5

    FlowJo ......................................................................................................................6 ...........................................................................................6 .........................................................................................................................10

    FlowJo ............................................................................................................13 .................................................................................................13 .....................................................................................................................16 .........................................................................................................................16

    FlowJo ....................................................................................................................18 FlowJo..............................................................................18 FlowJo .........................................................................................................18 .....................................................................................................................................24

    FlowJo ....................................................................................................................27 .........................................................................................................................27 .........................................................................................................................32 .........................................................................................................................35

    FlowJo ............................................................................................................43 .................................................................................................................................43 FlowJo .........................................................................................................44 .........................................................................................................................45

    PatrickUnderline

    PatrickUnderline

    PatrickUnderline

    PatrickUnderline

  • II FlowJo support@flowjochina.com 400-680-5527

    FlowJo ....................................................................................................47 .........................................................................................................................47 FlowJo .................................................................................................48 .................................................................................................51 .........................................................................................................................53

    PatrickUnderline

  • III FlowJo support@flowjochina.com 400-680-5527

  • 1 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJoLeonard HerzenbergFACS

    90FlowJo

    FlowJo

    FlowJo

    1. PC

    Windows XPVistaWindows7

    512MB

    2.

    OSX10.3

    512MB

    FlowJo(Windows)

    http://www.flowjochina.com/content/download

  • 2 FlowJo support@flowjochina.com 400-680-5527

    V7.6.5

    http://www.flowjochina.com/sites/default/files/7.6.5_X32.exe

    FlowJo

    FlowJo

    NEXT

  • 3 FlowJo support@flowjochina.com 400-680-5527

    NEXT

    NEXT

    Install

    Done

  • 4 FlowJo support@flowjochina.com 400-680-5527

    a. DongleFlowJo

    b. Serial NumberUse

    Serial Number

    c. Get Trial LicenseFlowJo

    Use Serial Number

  • 5 FlowJo support@flowjochina.com 400-680-5527

    d. DemoFlowJo

    Run in Demo ModeDemoFlowJoDemo

    FlowJo

    FlowJo

  • 6 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    ,flowjochina

    www.flowjochina.com/sites/default/files/demodata.rar

    3 color compCy5PE comp.fcs

    1. FlowJo

    2. 3 color compFlowJo

  • 7 FlowJo support@flowjochina.com 400-680-5527

    3 color comp3 color

    comp

    Cy5PE comp.fcs

  • 8 FlowJo support@flowjochina.com 400-680-5527

    1) XSSC

    SSC

    2) YFSC

    FSC

    3)

    :

  • 9 FlowJo support@flowjochina.com 400-680-5527

    1) XCy5PE:CD4YHistogram

    2)

    a.

    CD4CD4

  • 10 FlowJo support@flowjochina.com 400-680-5527

    b.

    CD4CD

    a.

    WORDPPT

    b.

    SVG

    PNGEMFJPG

  • 11 FlowJo support@flowjochina.com 400-680-5527

    c. FlowJo

    d.

  • 12 FlowJo support@flowjochina.com 400-680-5527

    e.

    data001.JPGJPG, PNG, GIF, EMF,

    SVG, PDF

    FlowJoPNG

    f.

  • 13 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJo

    FlowJo3-color-experiment931115-

    B02-Sample01.FCS

    1. 3-color-experimentFlowJo

    2. 931115-B02-Sample01.FCS

    XFSCYSSC

  • 14 FlowJo support@flowjochina.com 400-680-5527

    3. XFluor::CD3YFSC

    CD3T

  • 15 FlowJo support@flowjochina.com 400-680-5527

    4. TXCy5PE::CD4Y

    PhyEry::CD8

    Q1CD8CD8+ T

    Q2

    Q3CD4CD4+ T

    Q4

  • 16 FlowJo support@flowjochina.com 400-680-5527

  • 17 FlowJo support@flowjochina.com 400-680-5527

    TREGCD4/CD25/FOXP3SSC vs. CD4

    CD4+CD25 vs. FOXP3

    CD25+/FOXP3+CD4+/CD25+/FOXP3+

    TREG

  • 18 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJo

    FlowJo

    1.

    2.

    3.

    FlowJo

    FlowJoFlowJo

    4

    http://www.video.flowjochina.com/v75%20Compensation_conv.html

    1. FlowJo

    3 color compCy5PE comp.fcs, FITC

    comp.fcs, PE comp.fcs3-COLOR.FCS

    Cy5PE, FITC, PE

    PatrickHighlight

    PatrickHighlight

    PatrickHighlight

  • 19 FlowJo support@flowjochina.com 400-680-5527

    2.

    Sample

    FlourFITC comp.fcs

  • 20 FlowJo support@flowjochina.com 400-680-5527

    3. 23FlowJo

    4.

    >

  • 21 FlowJo support@flowjochina.com 400-680-5527

    (poor control )FlowJo

    1. 1,2,3

    FlowJoPE

  • 22 FlowJo support@flowjochina.com 400-680-5527

    1) PEcw_Size

    2) Clear

    2.

    1) PEFSC/SSC

  • 23 FlowJo support@flowjochina.com 400-680-5527

    2) XPhyEry::aCD8Y

    Histogram PEPE

    a.

    b.

    3) PE-PE

    PE+

  • 24 FlowJo support@flowjochina.com 400-680-5527

    3. FlowJo

    3-color comp

    >

    0Log

    0

    LogicalFlowJo

    3-color comp3-

    COLOR.FCS

    1. 3-COLOR

    XCD3YCD8

    gate135.1%

  • 25 FlowJo support@flowjochina.com 400-680-5527

    2. XYT

    3. T

    Change transform values

  • 26 FlowJo support@flowjochina.com 400-680-5527

    X-10-30

    a.

    b. FCS3.0FlowJoFCS2.0

    FlowJo

  • 27 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    Titration DataCD8Sample 1

    Sample 2 ~ Sample 82

    1.

    Sample 1

  • 28 FlowJo support@flowjochina.com 400-680-5527

    XFL1-HYHistogram Sample 1

    FL1-H+

    RenameCD8+FL1-H-

    CD8-

    2.

  • 29 FlowJo support@flowjochina.com 400-680-5527

    CD8+

    MedianParameter

    FL1-HCD8FL1-H

  • 30 FlowJo support@flowjochina.com 400-680-5527

    (FL1-H):MedianCD8-CD8

    FL1-H

    3.

    Sample 1Sample 2

    Sample 2Sample

    1

  • 31 FlowJo support@flowjochina.com 400-680-5527

    Sample 1

    Titration Data

    Sample 1

    ALTSample 1

    Titration Data

    Sample 1

  • 32 FlowJo support@flowjochina.com 400-680-5527

    1.

    Sample 1CD8+CD8-

    (FL1-H):Median

  • 33 FlowJo support@flowjochina.com 400-680-5527

    2.

    Keyword

    Antibody Concentration

    OK

    3.

    CD8+ (FL1-H) Median CD8- (FL1-H) MedianCD8

    CD8MFI

    OK

  • 34 FlowJo support@flowjochina.com 400-680-5527

  • 35 FlowJo support@flowjochina.com 400-680-5527

    4.

    MFI

    1MFI1.

    1.

    Sample 1

  • 36 FlowJo support@flowjochina.com 400-680-5527

    FlowJoTitration Data

    FlowJo

  • 37 FlowJo support@flowjochina.com 400-680-5527

    2. (Overlay)

    1

    Titration Data

    (1) Sample 1Sample 2

    Sample 1

    (2) SpecifyControl

    Sample 1Sample 1OK

  • 38 FlowJo support@flowjochina.com 400-680-5527

    (3)

  • 39 FlowJo support@flowjochina.com 400-680-5527

    2

    Titration Data

    (1) Sample 1CTRL

    Sample 1

    Sample 1

  • 40 FlowJo support@flowjochina.com 400-680-5527

    (2)

  • 41 FlowJo support@flowjochina.com 400-680-5527

    (3)

    (4) coloringfilled

    (5)

  • 42 FlowJo support@flowjochina.com 400-680-5527

  • 43 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    Annexin V-FITC/PI

    Annexin V-FITC/PI

    PSVAnnexin V-FITC

    PS

    PSPI

    PS

    AnnexinPI

    Annexin V-FITC/PI

    AnnexinAnnexin, PI

  • 44 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    apoptosisZL-2011-12-20_400.fcs

    1. FlowJo

    XFSC-A,YSSC-A

    2. SSC/FSC

  • 45 FlowJo support@flowjochina.com 400-680-5527

    XFITC,AnnexinV-FITCYPE-Texas,PI

    1.

    2.

    Q1(AnnexinV-FITC)-/PI+

    Q2: (AnnexinV+FITC)+/PI+

    Q3(AnnexinV-FITC)+/PI-

    Q4(AnnexinV-FITC)-/PI-

  • 46 FlowJo support@flowjochina.com 400-680-5527

    Q2+Q3

    AnnexinV

  • 47 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    G1

    SG2MG1S

    DNAG2DNA

    M

    DNAPIPI

    DNARNA

    DNA

    DNA

  • 48 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    cell cycle 5206.001PI

    1.

    5206.001XFSC-HY

    SSC-H

  • 49 FlowJo support@flowjochina.com 400-680-5527

    2.

    XFL2-W(width)YFL2-A(area)

    BDFL2-A

    FL2-WFL2-AFL2H

    BeckmanXFL3-LIN,PI

    YFL3-PEAK,PI

  • 50 FlowJo support@flowjochina.com 400-680-5527

    3. FlowJo

    G1SG2G1CV

    G2CV

  • 51 FlowJo support@flowjochina.com 400-680-5527

    http://www.flowjochina.com/content/tutorial-video#cellcycle

    1.

    RMS

    RMS(root mean square error)

    RMS3.85

    2.

    WatsonDean-Jett-Fox

    RMSRMS

    Could not fit.

    Watson

    Dean-Jett-Fox

  • 52 FlowJo support@flowjochina.com 400-680-5527

    3.

    G1G2meanCV

    1 G2G12

    G1G2G1

    2(2G1)G2G1G20.5

    2 G1G2

    G1mean

    G1mean

    3 CV

    DNAG1G2CV

    G1 CV

    =G2 CVG2 CV G1 CV

    CVCV

    CV

  • 53 FlowJo support@flowjochina.com 400-680-5527

    1. RMSroot mean square errorRMS

    2. G1G1

    SS

    G2G2

    3. G1G1

    G2G2

    4. CVcoefficient of variationG0/G1

    CVCV

    G1 cvG1G1

    G2 cvG2

    Flowjo

    FlowJo FlJ FlowJo

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