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Atlas of theDeveloping Mouse Brain
at E17.5, P0, and P6
ADMB Book #4 23/8/06 3:13 PM Page I
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George PaxinosPrince of Wales Medical Research Institute
The University of New South Wales
Sydney, Australia
Glenda HallidayPrince of Wales Medical Research Institute
The University of New South Wales
Sydney, Australia
Charles WatsonDivision of Health Sciences
Curtin University of Technology
Perth, Australia
Yuri KoutcherovPrince of Wales Medical Research Institute
The University of New South Wales
Sydney, Australia
HongQin WangPrince of Wales Medical Research Institute
The University of New South Wales
Sydney, Australia
AMSTERDAM • BOSTON • HEIDELBERG • LONDON • NEW YORK • OXFORD
PARIS • SAN DIEGO • SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO
Academic Press is an imprint of Elsevier
Atlas of theDeveloping Mouse Brain
at E17.5, P0, and P6
ADMB Book 26/8/06 12:38 AM Page III
Academic Press is an imprint of Elsevier84 Theobald’s Road, London WC1X 8RR, UKRadarweg 29, PO Box 211, 1000 AE Amsterdam, The Netherlands30 Corporate Drive, Suite 400, Burlington, MA 01803, USA
First edition 2007
Copyright © 2007 Elsevier Inc. All rights reserved.
Cover design by Lewis TsalisBook design by Lewis TsalisCD-ROM design by Paul Halasz
No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by
any means electronic, mechanical, photocopying, recording or otherwise without the prior written permission
of the publisher Permissions may be sought directly from Elsevier’s Science & Technology Rights Department
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Alternatively you can submit your request online by visiting the Elsevier web site at
http://elsevier.com/locate/permissions, and selecting Obtaining permission to use Elsevier material.
Notice
No responsibility is assumed by the publisher for any injury and/or damage to persons or property as a
matter of products liability, negligence or otherwise, or from any use or operation of any methods, products,
instructions or ideas contained in the material herein. Because of rapid advances in the medical sciences,
in particular, independent verification of diagnoses and drug dosages should be made.
ISBN–13: 978-0-12-547622-5ISBN–10: 0-12-547622-1CD-ROM ISBN–13: 978-0-12373719-9CD-ROM ISBN–10: 0-12-373719-2
British Library Cataloguing in Publication DataA catalogue record for this book is available from the British Library
Library of Congress Cataloging-in-Publication DataA catalog record for this book is available from the Library of Congress
For information on all Academic Press publicationsvisit our web site at books.elsevier.com
Printed and bound in China
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We dedicate this book to Paul Halasz, and to Mark, Nelli and George, and ChengShan
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ContentsPreface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IX
Acknowledgements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IX
Introduction. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IX
Nomenclature . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . X
Histology . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . X
Preparation of photographs and drawings . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XI
The basis of delineations of structures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XI
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XII
Index of structures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XIII
Index of abbreviations. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XVIII
Figures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XXV
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PrefaceThe period from just before birth to a week after birth is one in which enormous
changes occur in the developing brain. Many researchers now use newborn or
late prenatal mice in their studies of gene expression on the brain. We have made
an atlas which presents the main anatomical features at three ages from E17.5 to
P6 which we hope will meet the needs of researchers in this area.
We welcome feedback, both positive and negative, on our publication. We have
no doubt that many researchers with expertise in specific areas will have local
knowledge more sophisticated than our own. We will be delighted to include
their contributions in future editions.
AcknowledgementsWe thank Lewis Tsalis and John Car for speed, accuracy and brilliance in the
construction of the diagrams, Lewis Tsalis for the cover design and layout of the
book, Julia Tsalis for accurately labelling the diagrams, and Paul Halasz for expert
construction of the CD-ROM. Work on rhombomeres reported herein was
supported by an Australian Research Council grant and comparative and
developmental work on the hypothalamus by a National Health and Medical
Research Council grant. We also acknowledge support from the Ronald Geoffrey
Arnold Foundation, the Rebecca Cooper Foundation, the Ramaciotti
Foundation, and a grant by Elsevier Academic Press for the construction of the
atlas. We thank Eleftherios Ferekidis for comments on the peripheral auditory
apparatus.
We thank our editor Dr Johannes Menzel of Elsevier for his support of this
project. His judgment, scientific knowledge, and great interpersonal skills have
ensured that this work has come to a pleasing conclusion.
IntroductionThis book is an atlas of brains of late fetal and newborn mice. The ages of E17.5,
P0, and P6 were selected to serve the needs of researchers interested in the effects
of gene manipulation and other early interventions on late maturing brain
anatomy, as well as those with other interests in the development of the brain.
Most areas in the P6 and P0 atlases are presented in nearly the same level of
detail as our atlas of the adult brain of this species (Paxinos and Franklin, 2003).
In delineating structures, we have been informed by our experience in mapping
the brains of adults of a variety of mammalian species (e.g. Paxinos and Watson,
2007), our previous work on the developing rat nervous system (Paxinos, et al.,
1994), and the work of other authors. The atlas sections were taken at relatively
close intervals, and the intervening sections stained with a variety of neuronal
markers.
The primary source of information for our delineation was the set of cresyl
violet stained sections depicted in the atlas plates. These plates are photographs
of 30 µm sections taken at 120 µm intervals (every fourth section was taken for
an atlas plate). In many cases, the cresyl violet stain alone gives clear boundaries
of nuclear structures, but in the E17.5 day brain there was little evident
differentiation in areas such as the thalamus, and other stains proved more
useful. Among the other markers we used, the most valuable was calbindin,
which shows some nuclei with outstanding contrast. Calretinin was, as always,
useful for identifying olfactory structures in the forebrain, but it also stained
some structures in caudal parts of the brain. Tyrosine hydroxylase identified only
the catecholamine cells bodies, with little terminal staining present especially at
the earlier ages.
We have, as far as possible, drawn in boundaries around the structures we have
identified. Where there was insufficient evidence to draw a boundary, we have
placed the abbreviation in what we believe to be the centre of the structure
identified. The boundaries of cell groups are indicated by dashed lines, and the
boundaries of fiber tracts are indicated by continuous lines. The ventricular
cavities are indicated by blue shading.
We have in some instances, identified structures according to the neuromere
from which they develop by the use of a prefix in italics (e.g. mRt represents the
mesencephalic part of the reticular formation and p1PAG is the prosomere 1 part
of the periaqueductal gray). For a comprehensive atlas of the boundaries of
neuromeric domains, we recommend the study of the atlas of the chick brain
(Puelles et al., 2007). We believe that in the future the identification of
neuromeric origins of cell groups in the mammalian brain will contribute
significantly to the understanding of the organization of the developing brain.
The representation of structures identified in the P0 and P6 brains can be readily
related to those in the adult mouse brain, but the conformation of the E17.5
brain makes such comparisons more difficult. One problem is that the brain is
sharply flexed at the caudal end of the mesencephalon (cephalic flexure) and
flexed again in the middle of the hindbrain (pontine flexure). Because we used
the same plane of section for the whole brain, the hindbrain is sectioned in a
way that is difficult at first to interpret. However, there are many outstanding
landmarks in this region, and those who use the atlas will find that the anatomy
can be mapped with reference to these landmarks.
As noted above, almost all of the structures that are represented in the adult
brain can be found in the P6 and P0 brain, but the relative sizes of nuclei are
often strikingly different from the adult. An example is the relatively large size
of the zona incerta. In the E17.5 brain, many fiber bundles are either not present
(such as the corpus callosum) or small and hard to identify. The cerebellum in
the E17.5 brain is no more than a small bud at the lateral edge of the 4th
ventricle. We were unable to accurately parcellate many of the components of
Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang IX
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the basal telencephalon in the E17.5 brain. In the E17.5 brain, only a few cortical
areas are sufficiently differentiated to enable their identification with certainty.
In this brain we were able to identify the piriform cortex, amygdalar cortical
components, insular cortex, cingulate cortex, retrosplenial cortex, and some
components of the subiculum.
We have identified a number of structures that lie outside of the brain in the
sections of the E17.5 and P0 animals. While we focused on neural structures,
such as the eye, inner ear, and peripheral nerves, a number of musculoskeletal
structures have also been identified to orient the reader.
NomenclatureIn this atlas, the names of brain structures and their abbreviations are based on
the system first developed by Paxinos and Watson (1982) and since then used in
many other major brain atlases (the mouse brain (Paxinos and Franklin, 2002),
the rhesus monkey brain (Paxinos et al., 2000), the human brain (Mai et al.,
2004, Paxinos and Huang, 1995), the developing rat brain (Paxinos et al., 1994;
Foster, 1998), the hamster brain (Morin and Wood, 2001) and the chick brain
(Puelles et al., 2007).
Our abbreviations have been constructed on the basis of the following principles:
1. The abbreviations represent the order of words as spoken in English
(e.g. DLG = dorsal lateral geniculate nucleus) rather than the order in which
they appear in older latinised terms.
2. The approach used in the abbreviations of the names of elements in the
periodic table was followed: the capital letter representing the first letter of
a word in a nucleus is followed, where necessary, by a lower case letter most
characteristic of that word (not necessarily the second letter; e.g. Mg =
magnesium; Rt = reticular).
3. All nuclei and other cell groupings (such as cortical areas) begin with a
capital letter, except some cranial nerve nuclei which begin with a number
followed by capital N (e.g. 12N represents the nucleus of the hypoglossal
nerve). All fiber bundles begin with lower case letters except some cranial
nerves which begin with a number followed by lower case n (for ‘nerve’, as
in 6n = abducens nerve). Thus, there is no necessity for a letter to be used
to point out that a structure is a nucleus. Similarly, there is no need for the
letter “t” to be used to denote a fiber tract.
4. Compound names of nuclei have a capital letter for each part (e.g. LPGi =
lateral paragigantocellular nucleus).
5. If a word occurs in the names of a number of structures, it is almost always
given the same abbreviation (e.g. Rt = reticular thalamic nucleus; RtTg =
reticulotegmental nucleus of the pons). Exceptions to this rule are made for
well-established abbreviations such as VTA.
6. Abbreviations of brain regions are omitted where the identity of the region in
question is clear from its position (CM = central median thalamic nucleus;
not CMTh).
7. Arabic numerals are used instead of Roman numerals in identifying cranial
nerves and their nuclei, layers of the cortex, and layers of the spinal cord.
While the spoken meaning is the same, the detection threshold is lower for
Roman numerals. The use of Arabic numerals ensures that ambiguity is
reduced. For example, VIII could signal ‘8’ or visual area 3. In addition, the
Arabic numerals are easier to position in small spaces available on diagrams
(8 is smaller than VIII).
8. The names of anatomical entities outside the brain are based on those used in
the atlas of the developing rat nervous system (Paxinos et al., 1994). However,
the abbreviations for these structures were harmonized as far as possible with
the abbreviations used by Mai et al (2004). It is our aim to assist scientists to
navigate seamlessly between the brains of humans and experimental animals
without frivolously introducing different terms or different abbreviations for
homologous structures in different animals. This principle can also be
applied to the mapping of the avian brain, and we have used the same terms
and abbreviations for structures in the chick brain (Puelles et al., 2007) as in
mammalian brains (mouse – Paxinos and Franklin, 2003; rat – Paxinos and
Watson, 2007; monkey – Paxinos et al., 2000; human – Mai et al., 2004;
Paxinos and Huang, 1995).
HistologyFor staging of embryos, see Paxinos et al. (1994). Following perfusion of dams
at 17.5 day of pregnancy, heads of mice were obtained and sectioned in a plane
roughly approximating in the forebrain to the coronal plane. We did not
determine the sex of the specimens before the brain was sectioned. However,
the characteristic morphology of the medial preoptic nucleus in the P6
specimen, strongly suggests that the specimen was male. The sections were cut
in a plane approximately at right angles to the superior surface of the calvarium.
Because of brain flexion, the plane resembled more the horizontal plane in the
region of the rhombencephalon.
For Postnatal Day 0 and Day 6, the neonates were killed by decapitation and the
heads postfixed in 4% paraformaldehyde for 3-7 days. For all ages, sections were
cut at 30 mm thickness, and every fourth section was taken for cresyl violet
staining. These cresyl violet stained sections were used for the plates pictured in
this atlas.
Cresyl Violet Staining Slides were immersed for 5 min in each of the following: xylene, xylene, 100%
alcohol, 100% alcohol, 95% alcohol, and 70% alcohol. They were dipped in
distilled water and stained in 0.5% cresyl violet for 15–30 min. They were
differentiated in water for 3–5 min and then dehydrated through 70% alcohol,
95% alcohol, and 100% alcohol. They were then put in xylene and coverslipped.
To make 500 ml of 0.5% cresyl violet of about pH 3.9, mix 2.5 g of cresylecht
violet (Chroma Gesellschaft, Postfach 11 10, D-73257, Kongen, Germany, Fax
number: 49-7024-82660), 300 ml of water, 30 ml of 1.0 M sodium acetate
(13.6 g of granular sodium acetate in 92 ml of water), and 170 ml of 1.0 M acetic
acid (29 ml of glacial acetic acid added to 471 ml of water). Mix this solution for
at least 7 days on a magnetic stirrer, then filter.
A detailed protocol of the staining procedures for the various neuronal markers
used in this work may be obtained from our website:
www.powmri.edu.au/staff/paxinos.htm.
X Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
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Preparation of photographs and drawings
Photography The photographs of stained brain sections were taken with a Nikon Multiphot
macrophotographic apparatus using 4”x5” Kodak Plus X film. High contrast
filters were used to print the photographs of cresyl violet sections, whereas lower
contrast filters were used to print the photographs of intervening sections stained
with neuronal markers.
Drawings Drawings, which later formed the basis of the figures, were made by tracing the
photographs of sections. The drawings were then digitized using Adobe
Illustrator.
Fiber tracts in the drawings are outlined by solid lines, and nuclei and cell groups
are outlined by broken lines. In general, each abbreviation is placed in the center
of the structure to which it relates; where this is not possible, the abbreviation is
placed alongside the structure and a leader line is used. The outlines of the
ventricles and aqueduct are filled in with solid color.
The Figure number appears in the top right corner of each drawing. Under the
Figure number is the stage of development and the identity of the section in that
particular series. For example, under the heading Figure 52 will appear the line
“P0 #11”, which means the eleventh section in the P0 series. Under, the section
identity is a number indicating the distance from the most rostral section in that
series. In the case of P0 #11, the number is 0.12 mm.
The basis of delineations of structuresThe identification of structures is based principally on our previous work on the
adult rat and mouse brains and the developing rat nervous system (Paxinos et al.,
(1994); Paxinos and Watson (2005); Paxinos and Franklin (2003)). We made
extensive use of the two chemoarchitectonic atlases of the rat brain
(Chemoarchitectonic Atlas of the Rat Forebrain (Paxinos et al., 1999) and
Chemoarchitectonic Atlas of the Rat Brainstem (Paxinos et al., 1999b)).
We were assisted by the description of brain regions and systems by referring
to specific chapters in a comprehensive text on the rat nervous system
(Paxinos, 2004). We refer readers to the following sources for further
information on specific areas.
• Olfactory system – Shipley et al. (2004)
• Basal ganglia – Heimer et al. (1995) and Gerfen (2004)
• Septum, hypothalamus and neurosecretory nuclei Simerly (2004),
Risold (2004) and Oldfield and McKinley (2004)
• Amygdala and bed nucleus of stria terminalis – de Olmos et al. (2004)
• Hippocampal region – Witter and Amaral (2004)
• Thalamus – Groenewegen and Witter (2004)
• Cerebral cortex – Palomero-Gallagher and Zilles (2004)
• Raphe nuclei – Harding et al. (2004) and Buttner-Ennever et al. (1988)
• Locus coeruleus and brainstem catecholamine cell groups – Aston-Jones
(2004)
• Brainstem nuclei associated with taste, respiratory, cardiovascular and other
autonomic functions – Saper (2004)
• Periaqueductal gray – Keay and Bandler (2004)
• Oromotor nuclei – Travers (2004)
• Precerebellar nuclei – Ruigrok (2004)
• Cerebellum – (Voogd, 2004)
• Somatosensory system – Tracey (2004)
• Visual system – Sefton et al. (2004)
• Auditory system – Malmierca and Merchan (2004).
Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang XI
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ReferencesArmstrong, WE (2004). Hypothalamic supraoptic and paraventricular nuclei.
In G. Paxinos (Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press,
San Diego, pp 369-388.
Aston-Jones, G (2004). Locus coeruleus, A5 and A7 noradrenergic cell groups.
In G. Paxinos (Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press,
San Diego, pp 259-294.
Berman, AL (1968). The Brainstem of the Cat: A Cytoarchitectonic Atlas with
Stereotaxic Coordinates. University of Wisconsin Press, Madison.
Carrive, P, and Paxinos, G (1994). The supraoculomotor cap: A region revealed
by NADPH diaphorase histochemistry. NeuroReport 5, 2257–2260.
De Olmos, JS, Beltramino, CA and Alheid, G (2004). Amygdala and extended
amygdala of the rat: a cytoarchitectonical, fibroarchitectonical, and
chemoarchitectonical survey. In G. Paxinos (Ed), The Rat Nervous System,
3rd ed. Elsevier Academic Press, San Diego, pp 510-601.
Faye-Lund, H, and Osen, KK (1985). Anatomy of the inferior colliculus in rat.
Anat. Embryol. 171, 1–20.
Foster G (1998). Chemical Neuroanatomy of the Prenatal Rat Brain.
A Developmental Atlas. Oxford University Press. New York. 416 pp.
Gerfen, CR (2004). Basal ganglia. In G. Paxinos (Ed), The Rat Nervous System,
3rd ed. Elsevier Academic Press, San Diego, pp 458-509.
Groenewegen, HJ and Witter, MP (2004). Thalamus. In G. Paxinos (Ed), The Rat
Nervous System, 3rd ed. Elsevier Academic Press, San Diego, pp 408-457.
Harding, A, Paxinos, G, and Halliday, G (2004). The serotonin and tachykinin
systems. In G. Paxinos (Ed), The Rat Nervous System, 3rd ed. Elsevier Academic
Press, San Diego, pp 1203-1256.
Heimer, L, Zahm, DS, and Alheid, GF (1995). Basal ganglia. In G. Paxinos (Ed),
The Rat Nervous System, 2nd ed. Academic Press, San Diego.
Hökfelt, T, Martensson, R, Bjorklund, A, Kleinau, S, and Goldstein, M (1984).
Distributional maps of tyrosine-hydroxylase-immunoreactive neurons in the
rat brain. In A. Bjorklund and T. Hökfelt (Eds), Handbook of Chemical
Neuroanatomy, Vol. 2, Part 1. Elsevier, Amsterdam.
Holstege, G (2004). Central nervous system control of micturition. In G. Paxinos
(Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 321-331.
Insausti, R, Herrero, MT, and Witter, MP (1997). Entorhinal cortex of the rat:
cytoarchitectonic subdivisions and the origin and distribution of cortical
efferents. Hippocampus 7: 146: 183.
Jacobowitz DM and Abbott LC (1998). Chemoarchitectonic Atlas of the
Developing Mouse Brain. CRC Press. New York.
Kanjhan, R, Lipski, J, Kruszewska, B, and Rong, W (1995). A comparative study
of presympathetic and Bötzinger neurons in the rostral ventrolateral medulla
(RVLM) of the rat. Brain Res. 699, 19–32.
Kaufman MH (1992). The atlas of mouse development. Academic Press –
Harcourt Brace Jovanovich. San Diego.
Lundy, RF Jr and Norgren, R (2004). Gustatory system. In G. Paxinos (Ed), The
Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego, pp 890-921.
Mai, JK, Assheuer, J, and Paxinos, G (2004). Atlas of the Human Brain. Elsevier
Elsevier Academic Press, San Diego.
Malmierca, MS and Merchan, MA (2004). Auditory system. In G. Paxinos (Ed),
The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 996-1081.
Morin, LP and Wood, RI (2001) A Stereotaxic Atlas of the Golden Hamster Brain
Academic Press, San Diego.
Neafsey, EJ, Bold, EL, Haas, G, Hurley-Gius, KM, Quirk, G, Sievert, CF, and
Terreberry, RR (1986). The organization of the rat motor cortex: A
microstimulation mapping study. Brain Res. Rev. 11, 77–96.
Oldfield, BJ and McKinley, MJ (2004). Circumventricular organs. In G. Paxinos
(Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 389-407.
Palomero-Gallagher, N and Zilles, K (2004). Isocortex. In G. Paxinos (Ed), The
Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego, pp 728-760.
Paxinos, G (Ed) (2004). The Rat Nervous System, 3rd ed., Elsevier Academic
Press, San Diego.
Paxinos, G, and Huang, X-F (1995). Atlas of the Human Brainstem.
Academic Press, San Diego.
Paxinos, G, and Watson, C (1982). The Rat Brain in Stereotaxic Coordinates.
Academic Press, Sydney.
Paxinos, G, and Watson, C (1986). The Rat Brain in Stereotaxic Coordinates,
2nd ed. Academic Press, San Diego.
Paxinos, G and Watson C (1997). The Rat Brain in Stereotaxic Coordinates,
Compact 3rd ed. CD-Rom. Academic Press, San Diego.
Paxinos, G, and Watson, C (2007). The Rat Brain in Stereotaxic Coordinates,
6th ed. Elsevier Academic Press, San Diego.
Paxinos, G, Kus, L, Ashwell, K, and Watson, C (1999a). Chemoarchitecture of the
Rat Forebrain. Academic Press, San Diego.
Paxinos, G, Carrive, P, Wang, H, and Wang P-Y (1999b). Chemoarchitecture of
the Rat Brainstem. Academic Press, San Diego.
Paxinos, G, Ashwell, KW, and Tork, I (1994). Atlas of the Developing Rat Nervous
System, 2nd ed, Academic Press, San Diego.
Paxinos, G, Huang, X-F, and Toga AW (2000). The Rhesus Monkey Brain in
Stereotaxic Coordinates. Academic Press, San Diego.
Paxinos, G and Franklin, K (2003). The Mouse Brain in Stereotaxic Coordinates.
3rd ed. Elsevier Academic Press, San Diego.
Puelles, L, Martinez-de-la-Torre, M, Martinez, S, Watson, C, and Paxinos, G
(2007). The Chick Brain in Stereotaxic Coordinates. Elsevier Academic Press,
San Diego.
Risold, PY (2004). The septal region. In G. Paxinos (Ed), The Rat Nervous
System, 3rd ed. Elsevier Academic Press, San Diego, pp 602-636.
Ruigrok, TJH (2004). Precerebellar nuclei and red nucleus. In G. Paxinos (Ed),
The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 167-204.
Saper, CB (2004). Central autonomic system. In G. Paxinos (Ed), The Rat
Nervous System, 3rd ed. Elsevier Academic Press, San Diego, pp 761-794.
XII Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
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Sefton, AJ, Dreher, B and Harvey, A (2004). Visual system. In G. Paxinos (Ed),
The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 1082-1164.
Scremin, OU (2004). Cerebral vascular system. In G. Paxinos (Ed), The Rat
Nervous System, 3rd ed. Elsevier Academic Press, San Diego, pp 1165-1202.
Shipley, MT, Ennis, M and Puche, A (2004). Olfactory system. In G. Paxinos (Ed),
The Rat Nervous System, 3rd ed. Elsevier Academic Press, San Diego,
pp 922-963.
Simerly, RB (2004). Anatomical substrates of hypothalamic integration.
In G. Paxinos (Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press,
San Diego, pp 336-368.
Tracey, D (2004). Ascending and descending pathways in the spinal cord.
In G. Paxinos (Ed), The Rat Nervous System, 3rd ed. Elsevier Academic Press,
San Diego, pp 149-164.
Tracey, D (2004). Somatosensory system. In G. Paxinos (Ed), The Rat Nervous
System, 3rd ed. Elsevier Academic Press, San Diego, pp 795-814.
Travers, JB (2004). Oromotor nuclei. In G. Paxinos (Ed), The Rat Nervous
System, 3rd ed. Elsevier Academic Press, San Diego, pp 295-320.
Voogd, J (2004). Cerebellum. In G. Paxinos (Ed), The Rat Nervous System,
3rd ed. Elsevier Academic Press, San Diego, pp 205-243.
Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang XIII
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List of StructuresNames of the structures are listed in alphabetical order.
Each name is followed by abbreviation of the structure.
1st cerebellar lobule (lingula) 1Cb
2nd and 3rd cerebellar lobules 2/3Cb
2nd cerebellar lobule 2Cb
3rd cerebellar lobule 3Cb
3rd ventricle 3V
4th and 5th cerebellar lobules 4/5Cb
4th cerebellar lobule 4Cb
4th ventricle 4V
5th cerebellar lobule 5Cb
6th cerebellar lobule 6Cb
7th cerebellar lobule 7Cb
8th cerebellar lobule 8Cb
9th cerebellar lobule 9Cb
10th cerebellar lobule (nodule) 10Cb
Aa 7Gn
A1 noradrenaline cells A1
A1 noradrenaline cells/C1 adrenaline cells A1/C1
A11dopamine cells A11
A13 dopamine cells A13
A14 dopamine cells A14
A4 noradrenaline cells A4
A5 noradrenaline cells A5
A7 noradrenaline cells A7
abducens nucleus 6N
abducens nucleus, retractor bulbi part 6RB
accessory nerve nucleus 11N
accessory neurosecretory nuclei ANS
accessory olfactory bulb AOB
accumbens nucleus Acb
accumbens nucleus neuroepithelium Acbne
accumbens nucleus, core AcbC
accumbens nucleus, shell AcbSh
agranular insular cortex, dorsal part AID
agranular insular cortex, posterior part AIP
agranular insular cortex, ventral part AIV
alar ligament of dens Alar
alar nucleus Al
alar orbital bone AOrb
alisphenoid bone ASph
alveus of the hippocampus alv
ambiguus nucleus Amb
ambiguus nucleus, compact part AmbC
ambiguus nucleus, loose part AmbL
ambiguus nucleus, subcompact part AmbSC
amygdala Amg
amygdalohippocampal area, anterolateral part AHiAL
amygdalohippocampal area, posterolateral AHiPL
amygdalohippocampal area, posteromedial part
AHiPM
amygdaloid fissure af
amygdaloid intramedullary gray IMG
amygdalopiriform transition area APir
amygdalostriatal transition area ASt
angular thalamic nucleus AngT
ansoparamedian fissure apmf
anterior amygdaloid area AA
anterior belly of the digastric muscle ADig
anterior cerebral artery acer
anterior chamber of the eye AntCh
anterior commissure ac
anterior commissure, anterior part aca
anterior commissure, intrabulbar part aci
anterior commissure, posterior part acp
anterior cortical amygdaloid nucleus ACo
anterior hypothalamic area AH
anterior hypothalamic area, anterior part AHA
anterior hypothalamic area, central part AHC
anterior hypothalamic area, posterior part AHP
anterior lobe of the pituitary APit
anterior olfactory nucleus AO
anterior olfactory nucleus, dorsal part AOD
anterior olfactory nucleus, external part AOE
anterior olfactory nucleus, lateral part AOL
anterior olfactory nucleus, medial part AOM
anterior olfactory nucleus, posterior part AOP
anterior olfactory nucleus, ventral part AOV
anterior olfactory nucleus, ventroposterior part AOVP
anterior perifornical nucleus APF
anterior pretectal nucleus APT
anterior pretectal nucleus, dorsal part APTD
anterior pretectal nucleus, ventral part APTV
anterior semicircular canal ASCC
anterior spinal artery asp
anterior tegmental nucleus ATg
anterior thalamic region ATh
anterodorsal thalamic nucleus AD
anteromedial thalamic nucleus AM
anteromedial thalamic nucleus, ventral part AMV
anterovent thalamic nucleus, dorsomedial part AVDM
anteroventral periventricular nucleus AVPe
anteroventral thalamic nucleus AV
anteroventral thalamic nucleus, ventrolateral part
AVVL
apex of cochlea Apex
aqueduct Aq
arcuate hypothalamic nucleus Arc
arcuate hypothalamic nucleus, dorsal part ArcD
arcuate hypothalamic nucleus, lateral part ArcL
arcuate hypothalamic nucleus, lateroposterior part
ArcLP
arcuate hypothalamic nucleus, medial part ArcM
arcuate hypothalamic nucleus, medial posterior part
ArcMP
area postrema AP
artery a
arytenoid cartilage Ary
ascending fibers of the facial nerve asc7
atlantoaxial joint AtAx
atlantooccipital joint AtOc
atlas Atlas
auditory tube Aud
auditory tube cartilage AudC
axis (C2 vertebra) Axis
azygous anterior cerebral artery azac
BBarrington’s nucleus Bar
basal nucleus (Meynert) B
basal nucleus, core BCo
basal telencephalon BTel
basal telencephalon, neuroepithelial zone BTelne
base of stapes BStap
basilar artery bas
basioccipital bone BOcc
basisphenoid bone BSph
basolateral amygdaloid nucleus BL
basolateral amygdaloid nucleus, anterior part BLA
basolateral amygdaloid nucleus, posterior part BLP
basolateral amygdaloid nucleus, ventral part BLV
basomedial amygdaloid nucleus BM
basomedial amygdaloid nucleus, anterior part BMA
basomedial amygdaloid nucleus, posterior part BMP
bed nucleus of stria terminalis, fusiform part Fu
bed nucleus of the accessory olfactory tract BAOT
bed nucleus of the anterior commissure BAC
bed nucleus of the stria terminalis ST
bed nucleus of the stria terminalis, dorsal part STD
bed nucleus of the stria terminalis, intermediate
division STI
bed nucleus of the stria terminalis, intraamygdaloid
division STIA
bed nucleus of the stria terminalis, lateral division,
dorsal part STLD
bed nucleus of the stria terminalis, lateral division,
intermediate part STLI
bed nucleus of the stria terminalis, lateral division,
juxtacapsular part STLJ
bed nucleus of the stria terminalis, lateral division,
posterior part STLP
bed nucleus of the stria terminalis, lateral division,
ventral part STLV
bed nucleus of the stria terminalis, medial division,
anterior part STMA
bed nucleus of the stria terminalis, medial division,
anterolateral part STMAL
bed nucleus of the stria terminalis, medial division,
anteromedial part STMAM
bed nucleus of the stria terminalis, medial division,
posterior part STMP
bed nucleus of the stria terminalis, medial division,
posterointermediate part STMPI
bed nucleus of the stria terminalis, medial division,
posterolateral part STMPL
bed nucleus of the stria terminalis, medial division,
posteromedial part STMPM
bed nucleus of the stria terminalis, medial division,
ventral part STMV
Botzinger complex Bo
brachium of the inferior colliculus bic
brachium of the superior colliculus bsc
CC1 adrenaline cells C1
C1 adrenaline cells and A1 noradrenaline cells C1/A1
C1 cells and caudoventrolateral reticular nucleus
C1/CVL
C2 adrenaline cells C2
carotid body CtdB
carotid canal Ctd
carotid plexus cpx
caudal linear nucleus of the raphe CLi
caudate putamen (striatum) CPu
caudate putamen, neuroepithelial zone CPune
caudomedial entothinal cortex CEnt
caudoventrolateral reticular nucleus CVL
caudoventrolateral reticular nucleus and C1 cells
CVL/C1
cavernous sinus cav
cell bridges of the ventral striatum CB
central amygdaloid nucleus Ce
central amygdaloid nucleus, capsular part CeC
central amygdaloid nucleus, lateral division CeL
central amygdaloid nucleus, medial division CeM
central canal CC
central cervical nucleus of the spinal cord CeCv
central gray CG
central gray, alpha part CGA
central gray, beta part CGB
central gray, gamma part CGG
central gray, nucleus O CGO
central medial thalamic nucleus CM
central nucleus of the inferior colliculus CIC
centrolateral thalamic nucleus CL
cerebellar commissure cbx
cerebellar white matter cbw
cerebellum Cb
cerebral cortex Cx
cerebral peduncle cp
cervicoauricular muscle CeAu
chorda tympani nerve cty
choroid plexus chp
cingulate cortex Cg
cingulate cortex, area 1 Cg1
cingulate cortex, area 2 Cg2
cingulum cg
claustrum Cl
clavicle Clav
cochlear (spiral) ganglion CGn
cochlear duct CD
cochlear root of the vestibulocochlear nerve 8cn
commissural nucleus of the inferior colliculus Com
commissural stria terminalis cst
commissure of the superior colliculus csc
common crus of the semicircular canals CCrus
condylar process of mandible Cond
copula of the pyramis Cop
cornea Cornea
coronoid process of the mandible Cor
corpus callosum cc
cortex-amygdala transition zone CxA
cortex-amygdala transition zone, layer 1 CxA1
cortex-amygdala transition zone, layer 2 CxA2
cortical plate CxP
cribriform plate of the ethmoid CrP
crus 1 of the ansiform lobule Crus1
crus 2 of the ansiform lobule Crus2
cuneate fasciculus cu
cuneate nucleus Cu
cuneate nucleus, rotundus part CuR
cuneiform nucleus CnF
Ddecussation of the superior cerebellar peduncle xscp
decussation of the trapezoid body tzx
deep cerebral white matter dcw
deep gray layer of the superior colliculus DpG
deep white layer of the superior colliculus DpWh
dens of the axis DAx
dentate gyrus DG
descending palatine artery dpal
developing cortex, layer 1 Cx1
dorsal 3rd ventricle D3V
dorsal cochlear nucleus DC
dorsal cochlear nucleus, deep core DCDp
dorsal cochlear nucleus, fusiform layer DCFu
dorsal cochlear nucleus, molecular layer DCMo
dorsal cortex of the inferior colliculus DCIC
dorsal corticospinal tract dcs
dorsal endopiriform nucleus DEn
dorsal fornix df
dorsal hippocampal commissure dhc
dorsal horn of spinal cord DH
dorsal hypothalamic area DA
dorsal intermediate entorhinal cortex DIEnt
dorsal lateral geniculate nucleus DLG
dorsal lateral olfactory tract dlo
dorsal motor nucleus of vagus 10N
dorsal nucleus of the lateral lemniscus DLL
dorsal paragigantocellular nucleus DPGi
dorsal part of claustrum DCl
dorsal peduncular cortex DP
dorsal periolivary region DPO
dorsal raphe nucleus DR
dorsal raphe nucleus, caudal part DRC
dorsal raphe nucleus, dorsal part DRD
dorsal raphe nucleus, lateral part DRL
dorsal raphe nucleus, ventral part DRV
dorsal raphe, interfascicular part DRI
dorsal recess of third ventricle DR3V
dorsal root ganglion DRGn
dorsal spinocerebellar tract dsc
dorsal spinocerebellar tract and olivocerebellar tract
dsc/oc
dorsal subiculum DS
dorsal tegmental decussation dtgx
dorsal tegmental nucleus DTg
dorsal tegmental nucleus, central part DTgC
dorsal tegmental nucleus, pericentral part DTgP
dorsal tenia tecta DTT
dorsal transition zone DTr
dorsal tuberomammillary nucleus DTM
dorsolateral entorhinal cortex DLEnt
dorsolateral orbital cortex DLO
dorsolateral periaqueductal gray DLPAG
dorsomedial hypothalamic nucleus DM
dorsomedial hypothalamic nucleus, compact part
DMC
dorsomedial hypothalamic nucleus, dorsal part DMD
dorsomedial hypothalamic nucleus, ventral part DMV
dorsomedial periaqueductal gray DMPAG
dorsomedial spinal trigeminal nucleus DMSp5
dorsomedial tegmental area DMTg
dysgranular insular cortex DI
Eectorhinal cortex Ect
Edinger-Westphal nucleus EW
emissary vein emv
enamel organ EnO
endolymphatic sac ELS
entopeduncular nucleus EP
entorhinal cortex Ent
entorhinal cortex, neuroepithelial zone Entne
ependyma and subependymal layer E
epiglottis EpiG
epipeduncular nucleus EpP
XIV Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
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episupraoptic nucleus ESO
ethmoid bone EthB
ethmoid thalamic nucleus Eth
exorbital gland ExOrb
external capsule ec
external carotid artery ectd
external cortex of the inferior colliculus ECIC
external cuneate nucleus ECu
external granular layer of developing cerebellum EGL
external medullary lamina eml
external plexiform layer of the olfactory bulb EPl
eye Eye
eyelid Eyelid
FF cell group of the vestibular complex FVe
facial motor nucleus, stylohyoid part 7SH
facial nerve 7n
facial nucleus 7N
facial nucleus, dorsal intermediate subnucleus 7DI
facial nucleus, dorsolateral subnucleus 7DL
facial nucleus, dorsomedial subnucleus 7DM
facial nucleus, lateral subnucleus 7L
facial nucleus, ventral intermediate subnucleus 7VI
facial nucleus, ventromedial subnucleus 7VM
fasciculus retroflexus fr
fasciola cinereum FC
field CA1 of the hippocampus CA1
field CA2 of the hippocampus CA2
field CA3 of the hippocampus CA3
fields of Forel FF
fimbria of the hippocampus fi
flocculus Fl
foramen magnum FMag
forceps major of the corpus callosum fmj
forceps minor of the corpus callosum fmi
fornix f
frontal and parietal bones Fro/Par
frontal assocn cortex FrA
frontal bone Fro
frontal cortex, area 3 Fr3
Ggelatinous layer of the caudal spinal trigeminal nucleus
Ge5
gemini hypothalamic nucleus Gem
genioglossus muscle GeGl
geniohyoid muscle GeHy
genu of the corpus callosum gcc
genu of the facial nerve g7
gigantocellular reticular nucleus Gi
gigantocellular reticular nucleus, alpha part GiA
gigantocellular reticular nucleus, ventral part GiV
globus pallidus GP
glomerular layer of the olfactory bulb Gl
glossopharyngeal and vagus nerves 9/10n
glossopharyngeal nerve 9n
glossopharyngeal, vagus, and accessory nerves
9/10/11n
gonial process Gonial
gracile fasciculus gr
gracile nucleus Gr
granular cell layer of the olfactory bulb GrO
granular insular cortex GI
granular layer of the dentate gyrus GrDG
granule cell layer of cochlear nuclei GrC
granule cell layer of the accessory olfactory bulb GrA
granule cell layer of the cerebellum GrCb
Hhabenular commissure hbc
habenular nuclei Hb
hamulus of the pterygoid bone HPtg
handle of malleus HMall
handle of stapes HStap
Harderian gland HardG
hemisphere of cerebellum Hem
hippocampal fissure hif
hippocampal region Hi
horizontal semicircular canal HSCC
horizontal semicircular canal ampulla HSCCA
hyoglossus muscle HyGl
hyoid bone Hyoid
hypoglossal canal 12C
hypoglossal nucleus 12N
hypoglossal nucleus, geniohyoid part 12GH
Iincus Inc
indusium griseum IG
inferior alveolar nerve ialn
inferior cerebellar peduncle (restiform body) icp
inferior colliculus IC
inferior ganglion of the glossopharyngeal nerve I9Gn
inferior meatus InfM
inferior oblique capitis muscle IObCa
inferior olivary nucleus IO
inferior olive, beta subnucleus IOBe
inferior olive, cap of Kooy of the medial nucleus IOK
inferior olive, dorsal nucleus IOD
inferior olive, dorsomedial cell group IODM
inferior olive, medial nucleus IOM
inferior olive, principal nucleus IOPr
inferior olive, subnucleus A of medial nucleus IOA
inferior olive, subnucleus B of medial nucleus IOB
inferior olive, subnucleus C of medial nucleus IOC
inferior olive, ventrolateral protrusion IOVL
inferior ophthalmic artery iopha
inferior rectus muscle IRec
inferior salivatory nucleus IS
infralimbic cortex IL
infraorbital artery iorb
infraorbital foramen IOrbF
infundibulum Inf
inner plexiform layer of the retina InPl
insular cortex Ins
interanterodorsal thalamic nucleus IAD
interanteromedial thalamic nucleus IAM
intercalated amygdaloid nucleus, main part IM
intercalated nuclei of the amygdala I
intercalated nucleus of the medulla In
intercrural fissure icf
interfascicular nucleus IF
intergeniculate leaf IGL
intermediate cortical layer ICx
intermediate endopiriform nucleus IEn
intermediate gray layer of the superior colliculus InG
intermediate lobe of the pituitary IPit
intermediate nucleus of the lateral lemniscus ILL
intermediate reticular nucleus IRt
intermediate white layer of the superior colliculus
InWh
intermediodorsal thalamic nucleus IMD
internal arcuate fibers ia
internal auditory meatus IAud
internal capsule ic
internal carotid artery ictd
internal jugular vein ijugv
internal medullary lamina iml
internal plexiform layer of the olfactory bulb IPl
interpeduncular fossa IPF
interpeduncular nucleus IP
interpeduncular nucleus, apical subnucleus IPA
interpeduncular nucleus, caudal subnucleus IPC
interpeduncular nucleus, dorsolateral subnucleus
IPDL
interpeduncular nucleus, dorsomedial subnucleus
IPDM
interpeduncular nucleus, intermediate subnucleus IPI
interpeduncular nucleus, lateral subnucleus IPL
interpeduncular nucleus, rostral subnucleus IPR
interposed cerebellar nucleus Int
interposed cerebellar nucleus, anterior part IntA
interposed cerebellar nucleus, dorsolateral hump
IntDL
interposed cerebellar nucleus, posterior part IntP
interposed cerebellar nucleus, posterior parvicellular
part IntPPC
interstitial nucleus of Cajal InC
interstitial nucleus of the medulla IB
interstitial nucleus of the posterior limb of the anterior
commissure IPAC
interstitial nucleus of the vestibulocochlear nerve I8
interventricular foramen IVF
intramedullary thalamic area IMA
iris Iris
islands of Calleja ICj
islands of Calleja, major island ICjM
Jjugular foramen JugF
juxtaparaventricular part of lateral hypothalamus
JPLH
KKˆlliker-Fuse nucleus KF
Llacunosum moleculare layer of the hippocampus
LMol
lambdoid septal zone Ld
laryngopharynx LarPh
larynx Lar
lat amygdaloid nucleus La
lateral (dentate) cerebellar nucleus Lat
lateral accumbens shell LAcbSh
lateral amygdaloid nucleus, dorsolateral part LaDL
lateral amygdaloid nucleus, ventrolateral part LaVL
lateral amygdaloid nucleus, ventromedial part LaVM
lateral cerebellar nucleus, parvicellular part LatPC
lateral column of the spinal cord lc
lateral entorhinal cortex LEnt
lateral habenular nucleus LHb
lateral habenular nucleus, lateral part LHbL
lateral habenular nucleus, medial part LHbM
lateral hypothalamic area LH
lateral lemniscus ll
lateral mammillary nucleus LM
lateral olfactory tract lo
lateral orbital cortex LO
lateral parabrachial nucleus LPB
lateral parabrachial nucleus, central part LPBC
lateral parabrachial nucleus, external part LPBE
lateral parabrachial nucleus, internal part LPBI
lateral parabrachial nucleus, superior part LPBS
lateral paragigantocellular nucleus LPGi
lateral parietal association cortex LPtA
lateral periaqueductal gray LPAG
lateral posterior thalamic nucleus LP
lateral posterior thalamic nucleus, laterorostral part
LPLR
lateral posterior thalamic nucleus, mediorostral part
LPMR
lateral preoptic area LPO
lateral pterygoid muscle LPtg
lateral recess of the 4th ventricle LR4V
lateral rectus capitis muscle LReCa
lateral rectus muscle LRec
lateral reticular nucleus LRt
lateral reticular nucleus, parvicellular part LRtPC
lateral reticular nucleus, subtrigeminal part LRtS5
lateral septal nucleus LS
lateral septal nucleus, dorsal part LSD
lateral septal nucleus, intermediate part LSI
lateral septal nucleus, ventral part LSV
lateral stripe of the striatum LSS
lateral superior olive LSO
lateral terminal nucleus of the accessory optic tract LT
lateral ventricle LV
lateral vestibular nucleus LVe
lateroanterior hypothalamic nucleus LA
laterodorsal tegmental nucleus LDTg
laterodorsal tegmental nucleus, ventral part LDTgV
laterodorsal thalamic nucleus LD
laterodorsal thalamic nucleus, dorsomedial part
LDDM
laterodorsal thalamic nucleus, ventrolateral part
LDVL
lateroventral periolivary nucleus LVPO
layer 1 of cortex 1
layer 1 of developing cortex 1Cx
layer 2 of cortex 2
layer 3 of cortex 3
layer 4 of cortex 4
lemina terminalis LTer
lens Lens
levator palati muscle LPal
levator palpebrae superioris muscle LPS
linear nucleus of the medulla Li
lingual artery lga
lingual nerve lgn
lithoid nucleus Lth
loculated brown fat Fat
locus coeruleus LC
longissimus capitis muscle LgsCa
longitudinal fasciculus of the pons lfp
longus capitis muscle LgCa
Mmagnocellular nucleus of the lateral hypothalamus
MCLH
magnocellular nucleus of the posterior commissure
MCPC
magnocellular preoptic nucleus MCPO
malleus Mall
mammillary body MB
mammillary peduncle mp
mammillary recess of the 3rd ventricle MRe
mammillotegmental tract mtg
mammillothalamic tract mt
mandible Man
marginal zone of the medial geniculate MZMG
masseter muscle MasM
masseteric artery masa
masseteric nerve masn
masseteric vein masv
mastoid process of temporal bone Mst
matrix region of the medulla Mx
maxillary artery mxa
maxillary bone (maxilla) MxB
maxillary vein mxv
Meckel’s cartilage Mc
medial (fastigial) cerebellar nucleus Med
medial accessory oculomotor nucleus MA3
medial amygdaloid nucleus Me
medial amygdaloid nucleus, ant dorsal MeAD
medial amygdaloid nucleus, anterior part MeA
medial amygdaloid nucleus, anteroventral part MeAV
medial amygdaloid nucleus, posterodorsal part MePD
medial amygdaloid nucleus, posteroventral part MePV
medial cerebellar nucleus, dorsolateral protuberance
MedDL
medial cerebellar nucleus, lateral part MedL
medial eminence, external layer MEE
medial eminence, internal layer MEI
medial entorhinal cortex MEnt
medial forebrain bundle mfb
medial geniculate nucleus MG
medial geniculate nucleus, dorsal part MGD
medial geniculate nucleus, medial part MGM
medial geniculate nucleus, ventral part MGV
medial habenular nucleus MHb
medial lemniscus ml
medial lemniscus decussation mlx
medial longitudinal fasciculus mlf
medial mammillary nucleus, lateral part ML
medial mammillary nucleus, medial part MM
medial mammillary nucleus, median part MnM
medial orbital cortex MO
medial parabrachial nucleus MPB
medial parabrachial nucleus external part MPBE
medial paralemniscial nucleus MPL
medial parietal association cortex MPtA
medial preoptic area MPA
medial preoptic nucleus MPO
medial preoptic nucleus, central part MPOC
medial preoptic nucleus, lateral part MPOL
medial preoptic nucleus, medial part MPOM
medial pretectal nucleus MPT
medial pterygoid muscle MPtg
medial rectus muscle MRec
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medial septal nucleus MS
medial superior olive MSO
medial terminal nucleus of the accessory optic tract
MT
medial tuberal nucleus MTu
medial vestibular nucleus MVe
medial vestibular nucleus, magnocellular part
MVeMC
medial vestibular nucleus, parvicellular part MVePC
median accessory nucleus of the medulla MnA
median eminence ME
median preoptic nucleus MnPO
median raphe nucleus MnR
mediodorsal thalamic nucleus MD
mediodorsal thalamic nucleus, central part MDC
mediodorsal thalamic nucleus, lateral part MDL
mediodorsal thalamic nucleus, medial part MDM
medioventral periolivary nucleus MVPO
medullary reticular nucleus, dorsal part MdD
medullary reticular nucleus, ventral part MdV
mesencephalic reticular formation mRt
mesencephalic trigeminal nucleus Me5
mesencephalic trigeminal tract me5
microcellular tegmental nucleus MiTg
middle cerebellar peduncle mcp
middle cerebral artery mcer
middle meatus MidM
mitral cell layer of the accessory olfactory bulb MiA
mitral cell layer of the olfactory bulb Mi
molecular layer of the cerebellum MoCb
molecular layer of the dentate gyrus MoDG
motor root of the trigeminal nerve m5
motor trigeminal nucleus 5N
motor trigeminal nucleus, anterior digastric part
5ADi
motor trigeminal nucleus, tensor tympani part 5TT
mylohyoid muscle MyHy
Nnasal cavity NasC
nasal septum NSpt
navicular nucleus of the basal forebrain Nv
nerve of the pterygoid canal ptgcn
neuroepithelial zone of developing cortex Cxne
neuroepithelium ne
nigrostriatal bundle ns
nucleus of Darkschewitsch Dk
nucleus of origin of efferents of the vestibular nerve
EVe
nucleus of Roller Ro
nucleus of the ansa lenticularis AL
nucleus of the brachium of the inferior colliculus BIC
nucleus of the central acoustic tract CAT
nucleus of the fields of Forel F
nucleus of the horizontal limb of the diagonal band
HDB
nucleus of the lateral olfactory tract LOT
nucleus of the lateral olfactory tract, layer 1 LOT1
nucleus of the lateral olfactory tract, layer 2 LOT2
nucleus of the optic tract OT
nucleus of the posterior commissure PCom
nucleus of the solitary tract Sol
nucleus of the solitary tract, central part SolCe
nucleus of the solitary tract, commissural part SolC
nucleus of the solitary tract, dorsomedial part SolDM
nucleus of the solitary tract, gelatinous part SolG
nucleus of the solitary tract, intermediate part SolIM
nucleus of the solitary tract, lateral part SolL
nucleus of the solitary tract, medial part SolM
nucleus of the solitary tract, rostrolateral part SolRL
nucleus of the solitary tract, ventrolateral part SolVL
nucleus of the stria medullaris SM
nucleus of the trapezoid body Tz
nucleus of the vertical limb of the diagonal band VDB
nucleus X X
nucleus Y Y
nucleus Z Z
Ooccipital artery occ
occipital bone Occ
occipital sinus occs
oculomotor nerve 3n
oculomotor nucleus 3N
oculomotor nucleus, parvicellular part 3PC
olfactory nerve layer ON
olfactory nerve or its rootlets 1n
olfactory tubercle Tu
olfactory tubercle, layer 1 Tu1
olfactory ventricle (olfactory part of lateral ventricle)
OV
olivary pretectal nucleus OPT
olivocochlear bundle ocb
omohyoid muscle OmHy
ophthalmic artery opha
ophthalmic vein ophv
optic chiasm och
optic disc OpD
optic fiber layer of the retina OF
optic foramen OptF
optic nerve 2n
optic nerve layer of the superior colliculus Op
optic tract opt
oral cavity Oral
organ of Corti Corti
oriens layer of the hippocampus Or
otic ganglion Otic
oval paracentral thalamic nucleus OPC
oval window OvalW
Ppalatine bone Pal
palatoglossus muscle PalGl
parabigeminal nucleus PBG
parabrachial nucleus PB
parabrachial pigmented nucleus of the VTA PBP
paracentral thalamic nucleus PC
paracommissural nucleus of the posterior commissure
PaC
parafascicular thalamic nucleus PF
parafloccular cavity PFlCv
parafloccular sulcus pfs
paraflocculus PFl
parainterfascicular nucleus of the VTA PIF
paralambdoid septal nucleus PLd
paramedian lobule PM
paramedian raphe nucleus PMnR
paramedian reticular nucleus PMn
paramedian sulcus pms
paranigral nucleus of the VTA PN
parapyramidal nucleus PPy
pararubral nucleus PaR
parasolitary nucleus PSol
parastrial nucleus PS
parasubiculum PaS
parasubthalamic nucleus PSTh
paratenial thalamic nucleus PT
paraterete nucleus PTe
paratrigeminal nucleus Pa5
paratrochlear nucleus Pa4
paraventricular hypoth nucleus Pa
paraventricular hypothalamic nucleus, anterior
parvicellular part PaAP
paraventricular hypothalamic nucleus, dorsal cap
PaDC
paraventricular hypothalamic nucleus, lateral
magnocellular part PaLM
paraventricular hypothalamic nucleus, medial
magnocellular part PaMM
paraventricular hypothalamic nucleus, medial
parvicellular part PaMP
paraventricular hypothalamic nucleus, posterior part
PaPo
paraventricular hypothalamic nucleus, ventral part
PaV
paraventricular thalamic nucleus PV
paraventricular thalamic nucleus, anterior part PVA
paraventricular thalamic nucleus, posterior part PVP
paraxiphoid nucleus of thalamus PaXi
parietal bone ParB
parietal cortex Pt
parietal cortex, posterior area, caudal part PtPC
parietal cortex, posterior area, dorsal part PtPD
parietal cortex, posterior area, rostral part PtPR
parietal plate ParP
parotid gland Ptd
parvicellular reticular nucleus PCRt
parvicellular reticular nucleus, alpha part PCRtA
peduncular part of lateral hypothalamus PLH
pedunculopontine tegmental nucleus PTg
periaqueductal gray PAG
perifacial zone P7
perifornical nucleus PeF
perifornical part of lateral hypothalamus PeFLH
perilemniscal nucleus, ventral part PLV
peripeduncular nucleus PP
perirhinal cortex PRh
peritrigeminal zone P5
periventricular hypothalamic nucleus Pe
pigment layer of the eye Pig
pineal gland Pi
pinna of the ear Pinna
piriform cortex Pir
piriform cortex, layer 1 Pir1
pleoglial periaqueductal gray PlPAG
polymorph layer of the dentate gyrus PoDG
pontine nuclei Pn
pontine raphe nucleus PnR
pontine reticular nucleus, caudal part PnC
pontine reticular nucleus, oral part PnO
pontine reticular nucleus, ventral part PnV
posterior belly of the digastric muscle PDig
posterior cerebral artery pcer
posterior commissure pc
posterior hypothalamic area PHA
posterior hypothalamic area, dorsal part PHD
posterior hypothalamic nucleus PH
posterior intralaminar thalamic nucleus PIL
posterior limitans thalamic nucleus PLi
posterior lobe of pituitary PPit
posterior pretectal nucleus PPT
posterior semicircular canal PSCC
posterior semicircular canal ampulla PSCCA
posterior superior alveolar artery psa
posterior superior fissure psf
posterior thalamic nuclear group Po
posterior thalamic nuclear group, triangular part PoT
posterodorsal preoptic nucleus PDPO
posterodorsal raphe nucleus PDR
posterodorsal tegmental nucleus PDTg
posteroinferior cerebellar artery pica
posterolateral cortical amygdaloid nucleus PLCo
posterolateral cortical amygdaloid nucleus, layer 1
PLCo1
posterolateral fissure plf
posteromedial cortical amygdaloid nucleus PMCo
posteromedian thalamic nucleus PoMn
postsubiculum Post
pre lateral spinal PrLSp
pre-Botzinger complex PrBo
pre-Edinger-Westphal nucleus PrEW
precommissural nucleus PrC
preculminate fissure pcuf
precuneiform area PrCnF
prelimbic cortex PrL
premammillary nucleus, dorsal part PMD
premammillary nucleus, ventral part PMV
preoptic hypothalamus POHy
prepositus nucleus Pr
prepyramidal fissure ppf
prerubral field PR
presphenoid bone PSph
presphenoid wing PSphW
presubiculum PrS
prethalamus (prosomere 3) PrTh
primary auditory cortex Au1
primary fissure prf
primary motor cortex M1
primary somatosensory cortex S1
primary somatosensory cortex, barrel field S1BF
primary somatosensory cortex, dysgranular zone
S1DZ
primary somatosensory cortex, forelimb region S1FL
primary somatosensory cortex, hindlimb region S1HL
primary somatosensory cortex, jaw region S1J
primary somatosensory cortex, oral dysgranular zone
S1DZO
primary somatosensory cortex, shoulder region S1Sh
primary somatosensory cortex, trunk region S1Tr
primary somatosensory cortex, upper lip region
S1ULp
primary visual cortex V1
primary visual cortex, binocular area V1B
primary visual cortex, monocular area V1M
principal mammillary tract pm
principal sensory trigeminal nucleus Pr5
principal sensory trigeminal nucleus, dorsomedial part
Pr5DM
principal sensory trigeminal nucleus, ventrolateral part
Pr5VL
pterygoid process of the sphenoid bone Ptg
pterygopalatine nerve ptgpal
Purkinje cell layer of the cerebellum Pk
pyramidal cell layer of the hippocampus Py
pyramidal decussation pyx
pyramidal tract py
Rradiatum layer of the hippocampus Rad
raphe interpositus nucleus RIP
raphe magnus nucleus RMg
raphe obscurus nucleus ROb
raphe pallidus nucleus RPa
Rathke’s pouch Rath
recess of the inferior colliculus ReIC
rectus capitis posterior major muscle RCPMj
red nucleus R
red nucleus, magnocellular part RMC
red nucleus, parvicellular part RPC
Reichert’s cartilage Rc
reticluostrial nucleus RtSt
reticular thalamic nucleus Rt
reticulotegmental nucleus of the pons RtTg
reticulotegmental nucleus of the pons, lateral part
RtTgL
reticulotegmental nucleus of the pons, pericentral part
RtTgP
retinal ganglion cell layer of the retina RGn
retroambiguus nucleus RAmb
retrochiasmatic area RCh
retrochiasmatic area, lateral part RChL
retroethmoid nucleus REth
retrolemniscal nucleus RL
retroparafascicular nucleus RPF
retrorubral field RRF
retrorubral field and A8 dopamine cells RRF/A8
retrorubral nucleus RR
retrosplenial dysgranular cortex RSD
retrosplenial granular cortex RSG
retrosplenial granular cortex, a region RSGa
retrosplenial granular cortex, b region RSGb
retrosplenial granular cortex, c region RSGc
retrouniens area RRe
reuniens thalamic nucleus Re
rhabdoid nucleus Rbd
rhinal fissure rf
rhomboid thalamic nucleus Rh
root of abducens nerve 6n
root of accessory nerve 11n
root of hypoglossal nerve 12n
rostral amygdalopiriform area RAPir
rostral interstitial nucleus of medial longitudinal
fasciculus RI
rostral linear nucleus of the raphe RLi
rostral ventral respiratory group RVRG
rostral ventrolateral reticular nucleus C1/RVL
rostroventrolateral reticular nucleus RVL
rubrospinal tract rs
Ssaccule Sacc
sagulum nucleus Sag
salpingopharyngeus muscle SalPh
scala tympani ScTy
scala vestibuli ScVe
XVI Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
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scaphoid thalamic nucleus Sc
scapula Scap
second cervical vertebra CV2
secondary auditory cortex, dorsal area AuD
secondary auditory cortex, ventral area AuV
secondary fissure sf
secondary motor cortex M2
secondary somatosensory cortex S2
secondary visual cortex, lateral area V2L
secondary visual cortex, mediolateral area V2ML
secondary visual cortex, mediomedial area V2MM
sensory root of the trigeminal nerve s5
septofimbrial nucleus SFi
septohippocampal nucleus SHi
septohypothalamic nucleus SHy
septum Spt
septum neuroepithelium Sptne
sigmoid sinus sig
simple lobule Sim
solitary nucleus, dorsolateral part SolDL
solitary nucleus, ventral part SolV
solitary tract sol
sphenoid nucleus Sph
sphenopalatine ganglion SphPal
spinal trigeminal nucleus, caudal part Sp5C
spinal trigeminal nucleus, interpolar part Sp5I
spinal trigeminal nucleus, oral part Sp5O
spinal trigeminal tract sp5
spinal vestibular nucleus SpVe
splenium of the corpus callosum scc
splenius capitis muscle SplCa
stapedius bone Stap
stapedius muscle StapM
sternomastoid muscle StM
stigmoid hypothalamic nucleus Stg
stratum lucidum of the hippocampus SLu
stria medullaris of the thalamus sm
stria terminalis st
strial part of the preoptic area StA
striohypothalamic nucleus StHy
styloglossus muscle StyGl
stylohyoid muscle StyHy
stylomastoidforamen StyMF
stylopharyngeus muscle StyPh
subbrachial nucleus SubB
subcoeruleus nucleus SubC
subcoeruleus nucleus, alpha part SubCA
subcoeruleus nucleus, dorsal part SubCD
subcoeruleus nucleus, ventral part SubCV
subcommissural organ SCO
subfornical organ SFO
subgeniculate nucleus SubG
subiculum S
subincertal nucleus SubI
sublenticular extended amygdala EA
sublenticular extended amygdala, central part EAC
sublenticular extended amygdala, medial part EAM
submammillothalamic nucleus SMT
submedius thalamic nucleus Sub
submedius thalamic nucleus, ventral part SubV
subparafascicular thalamic nucleus SPF
subparafascicular thalamic nucleus, parvicellular part
SPFPC
subparaventricular zone of the hypothalamus SPa
subpeduncular tegmental nucleus SPTg
subpostrema area SubP
substantia innominata, basal part SIB
substantia nigra SN
substantia nigra, compact part, dorsal tier SNCD
substantia nigra, compact part, medial tier SNCM
substantia nigra, compacta part, ventral tier SNCV
substantia nigra, lateral part SNL
substantia nigra, reticular part SNR
subthalamic nucleus STh
subventricular layer of developing cortex SubVCx
sulcus limitans sl
superficial gray layer of the superior colliculus SuG
superficial temporal vein stv
superior cerebellar peduncle (brachium conjunctivum)
scp
superior colliculus SC
superior constrictor muscle of the pharynx SCM
superior ganglion of the glossopharyngeal nerve S9Gn
superior meatus SupM
superior medullary velum SMV
superior oblique capitis muscle SObCa
superior oblique muscle SOb
superior olivary nucleus. lateral part SOl
superior paraolivary nucleus SPO
superior rectus muscle SRec
superior sagittal sinus sss
superior salivatory nucleus SuS
superior thalamic radiation str
superior vestibular nucleus SuVe
suprachiasmatic nucleus SCh
suprachiasmatic nucleus, dorsolateral part SChDL
suprachiasmatic nucleus, ventromedial part SChVM
suprageniculate thalamic nucleus SG
supragenual nucleus SGe
supramammillary decussation sumx
supramammillary nucleus SuM
supramammillary nucleus, lateral part SuML
supramammillary nucleus, medial part SuMM
supraoculomotor cap Su3C
supraoculomotor periaqueductal gray Su3
supraoptic decussation sox
supraoptic nucleus SO
supraoptic nucleus, retrochiasmatic part SOR
supraspinal nucleus SSp
supratrigeminal nucleus Su5
suspensory ligament SuspLig
Ttectal gray TG
tectospinal tract ts
temporal associatin cortex TeA
temporal bone, petrosal part TempP
temporal bone, squamous part TempS
temporalis muscle TempM
temporomandibular joint TMJ
tensor palati muscle TPal
tensor tympani muscle TT
terete hypothalamic nucleus Te
thyroid gland Thy
tongue Tongue
transverse fibers of the pons tfp
transverse sinus trs
trapezius muscle TzM
trapezoid body tz
triangular nucleus, lateral lemniscus TrLL
triangular septal nucleus TS
triangular septal nucleus, neuroepithelial zone TSne
trigeminal ganglion 5Gn
trigeminal ganglion and trigeminal nerve 5Gn/5n
trigeminal nerve 5n
trigeminal nerve, mandibular division 5man
trigeminal nerve, maxillary division 5mx
trigeminal nerve, ophthalmic division 5oph
trigeminal transition zone 5Tr
trigeminal-solitary transition zone 5Sol
trigeminothalamic tract tth
trochlear nerve 4n
trochlear nucleus 4N
trochlear nucleus shell region 4Sh
tuberal region of lateral hypothalamus TuLH
tympanic branch of the glossopharyngeal nerve ty9
tympanic bulla TyBu
tympanic cavity TyC
tympanic membrane TyM
Uutricle Utr
Vvagus nerve 10n
vagus nerve ganglion 10Gn
vascular organ of the lamina terminalis VOLT
vein v
ventral anterior thalamic nucleus VA
ventral cochlear nucleus VC
ventral cochlear nucleus, anterior part VCA
ventral cochlear nucleus, capsular part VCCap
ventral cochlear nucleus, posterior part VCP
ventral cochlear nucleus, posterior part, octopus cell
area VCPO
ventral column of the spinal cord vc
ventral endopiriform nucleus VEn
ventral geniculate nucleus VG
ventral geniculate nucleus, layer 1 VG1
ventral hippocampal commissure vhc
ventral horn of spinal cord VH
ventral intermediate entorhinal cortex VIEnt
ventral linear nucleus of the thalamus VLi
ventral median fissure vmnf
ventral nucleus of the lat lemniscus VLL
ventral orbital cortex VO
ventral pallidum VP
ventral part of claustrum VCl
ventral posterior nucleus of the thalamus, parvicellular
part VPPC
ventral posterolateral thalamic nucleus VPL
ventral posteromedial thalamic nucleus VPM
ventral reuniens thalamic nucleus VRe
ventral spinocerebellar tract vsc
ventral subiculum VS
ventral tegmental area VTA
ventral tegmental area, rostral part VTAR
ventral tegmental decussation vtgx
ventral tegmental nucleus VTg
ventral tenia tecta VTT
ventral tenia tecta, layer 1 VTT1
ventral tuberomammillary nucleus VTM
ventricular space of the eye Vent
ventrolateral hypothalamic nucleus VLH
ventrolateral periaqueductal gray VLPAG
ventrolateral preoptic nucleus VLPO
ventrolateral thalamic nucleus VL
ventromedial hypothalamic nucleus VMH
ventromedial hypothalamic nucleus, central part
VMHC
ventromedial hypothalamic nucleus, dorsomedial part
VMHDM
ventromedial hypothalamic nucleus, ventrolateral part
VMHVL
ventromedial nucleus of the hypothalamus shell
VMHSh
ventromedial preoptic nucleus VMPO
ventromedial thalamic nucleus VM
vertebral artery vert
vestibular nerve ganglion VeGn
vestibular root of the vestibulocochlear nerve 8vn
vestibule of the inner ear Vest
vestibulocerebellar nucleus VeCb
vestibulocochlear nerve 8n
vestibulospinal tract vesp
vitreous cavity (posterior chamber) of the eye Vitr
vomer Vom
vomeronasal nerve vn
Xxiphoid thalamic nucleus Xi
Zzona incerta, caudal part ZIC
zona incerta, dorsal part ZID
zona incerta, rostral part ZIR
zona incerta, ventral part ZIV
zona layer of the superior colliculus Zo
zona limitans ZL
zygomatic arch ZygA
Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang XVII
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Index ofAbbreviationsThe abbreviations are listed in alphabetical order.
Each abbreviation is followed by the structure name
and the number of the figures on which the
abbreviation appears.
1 layer 1 of cortex 56-57, 59, 64, 110, 137
1Cb 1st cerebellar lobule (lingula) 94-95, 163
1Cx layer 1 of developing cortex 3-20, 22-24, 26-29
1n olfactory nerve or its rootlets 1-5, 42-44, 104-105
2 layer 2 of cortex 56-57, 59, 64-66, 68-70, 72-75,
108-139
2/3Cb 2nd and 3rd cerebellar lobules 93, 161-163
2Cb 2nd cerebellar lobule 158-160
2n optic nerve 5-9, 52-63, 108-110, 112-124
3 layer 3 of cortex 56-57, 59, 64-66, 68-70, 72-75,
108-139
3Cb 3rd cerebellar lobule 160
3N oculomotor nucleus 31-34, 80-82, 148-149
3n oculomotor nerve 9-15, 19-20, 59-64, 69, 71-73,
75-77, 121, 143, 146-147
3PC oculomotor nucleus, parvicellular part 32-34,
80-82, 149
3V 3rd ventricle 8-26, 59-70, 72, 74-76, 121-142
4 layer 4 of cortex 110
4/5Cb 4th and 5th cerebellar lobules 94, 162-163
4Cb 4th cerebellar lobule 161
4N trochlear nucleus 35-36, 83-84, 150-153
4n trochlear nerve 9-15, 19-20, 59-64, 70-71, 73,
76-78, 82, 121, 143, 146-147
4Sh trochlear nucleus shell region 150-151, 153
4V 4th ventricle 26-41, 87-100, 158-169
5ADi motor trigeminal nucleus, anterior digastric
part 156-157
5Cb 5th cerebellar lobule 164-166
5Gn trigeminal ganglion 14, 16-22, 66, 68-69, 73-79,
143, 146-147
5Gn/5n trigeminal ganglion and trigeminal nerve
15, 65, 67, 70-72
5man trigeminal nerve, mandibular division 11-14,
16, 71-73
5mx trigeminal nerve, maxillary division 1-13,
42-62, 64, 104-105, 108, 110, 112-113, 116-117, 121
5N motor trigeminal nucleus 26-27, 29, 84-86,
154-157
5n trigeminal nerve 20-23, 63
5oph trigeminal nerve, ophthalmic division 9-13,
59-60, 62, 64, 121
5Sol trigeminal-solitary transition zone 29, 31,
34-37, 39-40, 89-100, 161-170
5Tr trigeminal transition zone 158-159
5TT motor trigeminal nucleus, tensor tympani part
24-28, 82-85, 151-155
6Cb 6th cerebellar lobule 95-102, 165-169
6N abducens nucleus 27-30, 87-88, 159-160
6n root of abducens nerve 9-15, 19-20, 59-65, 71-73,
75-76, 78-80, 87, 89, 121, 146, 159
6RB abducens nucleus, retractor bulbi part 87, 157
7Cb 7th cerebellar lobule 102-103, 166-174
7DI facial nucleus, dorsal intermediate subnucleus
25, 87-89, 91, 159-161
7DL facial nucleus, dorsolateral subnucleus 87, 89,
91, 159-161
7DM facial nucleus, dorsomedial subnucleus 25,
87-89, 91, 159-161
7Gn a 80, 82
7L facial nucleus, lateral subnucleus 25, 87-89, 91,
159-161
7N facial nucleus 23-24, 26-29, 90, 92, 158, 162-163
7n facial nerve 19-26, 80-92, 150-159
7SH facial motor nucleus, stylohyoid part 27-28, 89,
92, 158-163
7VI facial nucleus, ventral intermediate subnucleus
87-89, 91, 159-161
7VM facial nucleus, ventromedial subnucleus 87-89,
91, 159-161
8Cb 8th cerebellar lobule 101-103, 169-175
8cn cochlear root of the vestibulocochlear nerve
20-24, 84-87, 92, 154-159, 162
8n vestibulocochlear nerve 29, 34, 88-91, 94, 159,
161
8vn vestibular root of the vestibulocochlear nerve
25, 83-85, 89, 91, 152, 154-155, 159-160
9/10/11n glossopharyngeal, vagus, and accessory
nerves 28-29, 94-98, 163
9/10n glossopharyngeal and vagus nerves 93
9Cb 9th cerebellar lobule 97, 101-102, 167-176
9n glossopharyngeal nerve 30, 93-95
10Cb 10th cerebellar lobule (nodule) 96-102,
164-168
10Gn vagus nerve ganglion 25, 83-87, 90, 162-163
10N dorsal motor nucleus of vagus 35-39, 95-103,
166-174
10n vagus nerve 30, 165
11N accessory nerve nucleus 35-37, 102-103,
174-176
11n root of accessory nerve 30, 92-94, 97, 166, 170,
174
12C hypoglossal canal 96-98, 167
12GH hypoglossal nucleus, geniohyoid part 170
12N hypoglossal nucleus 35-38, 95-102, 165-175
12n root of hypoglossal nerve 28-29, 94, 96-101,
167-170, 172
Aa artery 108, 117, 140-141, 147
A1 A1 noradrenaline cells 101-103, 173-176
A1/C1 A1 noradrenaline cells/C1 adrenaline cells
171-172
A11 A11 dopamine cells 25, 69-71, 73, 79, 135-142
A13 A13 dopamine cells 65, 67-70, 132-134
A14 A14 dopamine cells 73, 129
A4 A4 noradrenaline cells 94
A5 A5 noradrenaline cells 24, 85, 88-89, 154-158
A7 A7 noradrenaline cells 26-29, 83-84, 86, 152-153,
155
AA anterior amygdaloid area 14-15, 63-68, 124-131
ac anterior commissure 11, 53, 56-61, 121-123
aca anterior commissure, anterior part 4-10, 49-52,
54-55, 109-120
Acb accumbens nucleus 5-8, 51-53
AcbC accumbens nucleus, core 54-58, 112-119
Acbne accumbens nucleus neuroepithelium 4
AcbSh accumbens nucleus, shell 53-58, 110-119
acer anterior cerebral artery 4-7, 55-56, 61, 115-128
aci anterior commissure, intrabulbar part 105-107
ACo anterior cortical amygdaloid nucleus 14-18,
64-70, 125-133
acp anterior commissure, posterior part 11-14, 59,
61, 63-66, 121-127
AD anterodorsal thalamic nucleus 14, 63-64,
124-127
ADig anterior belly of the digastric muscle 1, 3
af amygdaloid fissure 138-143
AH anterior hypothalamic area 14-16, 66
AHA anterior hypothalamic area, anterior part
12-13, 65, 127-129
AHC anterior hypothalamic area, central part 66-68,
129-131
AHiAL amygdalohippocampal area, anterolateral part
71-73, 135-138
AHiPL amygdalohippocampal area, posterolateral
74-75, 139-140
AHiPM amygdalohippocampal area, posteromedial
part 74-80, 139-144
AHP anterior hypothalamic area, posterior part
17, 67-68, 130-132
AID agranular insular cortex, dorsal part 50-67,
107-110, 111-121
AIP agranular insular cortex, posterior part 68-69,
122-132
AIV agranular insular cortex, ventral part 50-67,
107-121
AL nucleus of the ansa lenticularis 68
Al alar nucleus 59-60, 121
Alar alar ligament of dens 30-31
alv alveus of the hippocampus 68, 127-131, 133-147
AM anteromedial thalamic nucleus 14-15, 63-66,
125-131
Amb ambiguus nucleus 30, 32-36
AmbC ambiguus nucleus, compact part 93-96,
165-166
AmbL ambiguus nucleus, loose part 98-99, 169-171
AmbSC ambiguus nucleus, subcompact part 97,
167-168
Amg amygdala 13, 21
AMV anteromedial thalamic nucleus, ventral part
127-129
AngT angular thalamic nucleus 65, 129-133
ANS accessory neurosecretory nuclei 64-66, 127-130
AntCh anterior chamber of the eye 2, 4-5
AO anterior olfactory nucleus 3
AOB accessory olfactory bulb 2, 45-46
AOD anterior olfactory nucleus, dorsal part 47-49,
105-107
AOE anterior olfactory nucleus, external part 2, 47,
105-106
AOL anterior olfactory nucleus, lateral part 47-49,
105-107
AOM anterior olfactory nucleus, medial part 47-49,
106-107
AOP anterior olfactory nucleus, posterior part
49-50, 109-112
AOrb alar orbital bone 42-47, 49, 52-54
AOV anterior olfactory nucleus, ventral part 47,
105-107
AOVP anterior olfactory nucleus, ventroposterior part
48-50, 108-110
AP area postrema 39-40, 101, 168-173
Apex apex of cochlea 78
APF anterior perifornical nucleus 62
APir amygdalopiriform transition area 74-77, 79-80,
138-144
APit anterior lobe of the pituitary 17-20, 76-80, 143,
146
apmf ansoparamedian fissure 164-168, 170-172
APT anterior pretectal nucleus 24-29, 72-77,
137-138, 141-142, 144-146
APTD anterior pretectal nucleus, dorsal part
139-140, 143
APTV anterior pretectal nucleus, ventral part
139-140, 143
Aq aqueduct 26-27, 29-41, 76-97, 143-157
Arc arcuate hypothalamic nucleus 16-22, 24-26,
69-70, 132-133
ArcD arcuate hypothalamic nucleus, dorsal part
71, 74, 134-137
ArcL arcuate hypothalamic nucleus, lateral part
71-74, 134-138
ArcLP arcuate hypothalamic nucleus, lateroposterior
part 75, 139-141
ArcM arcuate hypothalamic nucleus, medial part
71-74, 134-138
ArcMP arcuate hypothalamic nucleus, medial
posterior part 75-76, 139-142
Ary arytenoid cartilage 20-21
asc7 ascending fibers of the facial nerve 30
ASCC anterior semicircular canal 26, 28-34, 85, 87,
89-95
asp anterior spinal artery 33
ASph alisphenoid bone 10-17, 58-64, 66, 68-77, 121
ASt amygdalostriatal transition area 68
AtAx atlantoaxial joint 30-31, 103
ATg anterior tegmental nucleus 33, 83-84, 152-153
ATh anterior thalamic region 13
Atlas atlas 25-26, 28-31, 33-41, 98-100, 103
AtOc atlantooccipital joint 30-31
Au1 primary auditory cortex 70-79, 131-143
AuD secondary auditory cortex, dorsal area 70-79,
131-144
Aud auditory tube 16
AudC auditory tube cartilage 17
AuV secondary auditory cortex, ventral area 70-79,
131-143
AV anteroventral thalamic nucleus 14, 65, 123-125
AVDM anterovent thalamic nucleus, dorsomedial part
63-64, 126-129
AVPe anteroventral periventricular nucleus 58-60,
123
AVVL anteroventral thalamic nucleus, ventrolateral
part 63-64, 126-129
Axis axis (C2 vertebra) 28-31, 33-41, 99-100
azac azygous anterior cerebral artery 5, 112-114
BB basal nucleus (Meynert) 15-16, 63-64, 66, 68,
124-129
BAC bed nucleus of the anterior commissure 61-62,
122-123
BAOT bed nucleus of the accessory olfactory tract
16, 67-70, 128-132
Bar Barrington’s nucleus 33-35, 87-91, 157-160
bas basilar artery 21-22, 24-26, 28, 31-32, 77-99,
146-171
BCo basal nucleus, core 127
BIC nucleus of the brachium of the inferior colliculus
31-35, 79-85, 146-155
bic brachium of the inferior colliculus 31-36, 79-85,
144-157
BL basolateral amygdaloid nucleus 16-17, 19-20
BLA basolateral amygdaloid nucleus, anterior part
18, 68-72, 128-134
BLP basolateral amygdaloid nucleus, posterior part
71-75, 133-140
BLV basolateral amygdaloid nucleus, ventral part
18-19, 69-72, 131-136
BM basomedial amygdaloid nucleus 19-20
BMA basomedial amygdaloid nucleus, anterior part
16-18, 65-70, 128-133
BMP basomedial amygdaloid nucleus, posterior part
70-74, 133-138
Bo Botzinger complex 93-94, 163-165
BOcc basioccipital bone 18-23, 25-26, 28-29, 37-38,
81-87, 89-90, 93-97, 162-163
bsc brachium of the superior colliculus 22, 26, 28,
69-75, 136-140
BSph basisphenoid bone 14, 17, 65-69, 71, 73-74,
77-80
BStap base of stapes 23-25
BTel basal telencephalon 5-10, 13
BTelne basal telencephalon, neuroepithelial zone
5-8, 10-16, 20-22
CC1 C1 adrenaline cells 90, 92, 161-168
C1/A1 C1 adrenaline cells and A1 noradrenaline cells
97-98, 100, 169-170
C1/CVL C1 cells and caudoventrolateral reticular
nucleus 95
C1/RVL rostral ventrolateral reticular nucleus 93-94
C2 C2 adrenaline cells 94
CA1 field CA1 of the hippocampus 65-69, 75,
128-134, 137-142
CA2 field CA2 of the hippocampus 65-69, 128-139
CA3 field CA3 of the hippocampus 63-69, 73-77,
126-143
CAT nucleus of the central acoustic tract 22, 82-84,
152-154
cav cavernous sinus 8-11, 13-14, 59, 61-62, 110,
113-117, 121
CB cell bridges of the ventral striatum 53-56, 59,
115-117, 119-120, 122
Cb cerebellum 30-31, 33-34, 36, 38-40, 86-90
cbw cerebellar white matter 156-173
cbx cerebellar commissure 38
CC central canal 33-38, 170-176
cc corpus callosum 57-62, 64-65, 101, 115-134
CCrus common crus of the semicircular canals
30-35, 93-94, 167-168
CD cochlear duct 19-25, 80-87, 89-91, 153-154
Ce central amygdaloid nucleus 16-20, 72
CeAu cervicoauricular muscle 31, 33-38
CeC central amygdaloid nucleus, capsular part
67-71, 99, 129-134
CeCv central cervical nucleus of the spinal cord
101, 103, 171-176
CeL central amygdaloid nucleus, lateral division
68-70, 129-133
CeM central amygdaloid nucleus, medial division
65-70, 128-133
CEnt caudomedial entothinal cortex 81-82, 145-152
CG central gray 29-32, 93
Cg cingulate cortex 14
cg cingulum 54-70, 112-138
Cg1 cingulate cortex, area 1 50-62, 108-126
Cg2 cingulate cortex, area 2 49, 54-61, 115-126
CGA central gray, alpha part 28, 88-89, 159-160
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CGB central gray, beta part 29, 87, 89, 158-159
CGG central gray, gamma part 88, 159-160
CGn cochlear (spiral) ganglion 20-24, 79-87, 92-93,
154, 157
CGO central gray, nucleus O 28, 89, 159
chp choroid plexus 12-22, 33-37, 131, 162, 166-169
CIC central nucleus of the inferior colliculus 87-93,
157-164
CL centrolateral thalamic nucleus 65, 67-70,
127-137
Cl claustrum 8-16, 50-59, 69, 109
Clav clavicle 20
CLi caudal linear nucleus of the raphe 33-34, 81-83,
149-152
CM central medial thalamic nucleus 16-20, 22-24,
63-65, 67-70, 125-136
CnF cuneiform nucleus 35-38, 83-94, 154-160
Com commissural nucleus of the inferior colliculus
26, 90-95, 159-162
Cond condylar process of mandible 15-18, 63-64,
66-69, 71-74
Cop copula of the pyramis 102-103, 168-173
Cor coronoid process of the mandible 6, 8-10,
55-59, 61
Cornea cornea 2-6, 44-47, 105
Corti organ of Corti 20, 87, 153-154
cp cerebral peduncle 24-33, 79-82, 84, 137-150
CPu caudate putamen (striatum) 7-20, 52-66,
68-72, 111-134
CPune caudate putamen, neuroepithelial zone 4-19
cpx carotid plexus 77-80
CrP cribriform plate of the ethmoid 1-4, 42-46, 49,
104
Crus1 crus 1 of the ansiform lobule 100-101,
156-171
Crus2 crus 2 of the ansiform lobule 102-103, 155,
159-172
csc commissure of the superior colliculus 27, 29,
74-76, 78, 143-144
cst commissural stria terminalis 15, 67-69, 128-131,
133
Ctd carotid canal 77-78
CtdB carotid body 87, 89-92, 94
cty chorda tympani nerve 67-70, 72
Cu cuneate nucleus 41, 99-103, 168-176
cu cuneate fasciculus 37-41, 100-103, 173-176
CuR cuneate nucleus, rotundus part 100-103,
171-175
CV2 second cervical vertebra 36
CVL caudoventrolateral reticular nucleus 167
CVL/C1 caudoventrolateral reticular nucleus and C1
cells 96
Cx cerebral cortex 83-85
Cx1 developing cortex, layer 1 21
CxA cortex-amygdala transition zone 14-16, 59-60,
62-63, 66-67, 131
CxA1 cortex-amygdala transition zone, layer 1
64-65, 126, 128-130
CxA2 cortex-amygdala transition zone, layer 2 61
Cxne neuroepithelial zone of developing cortex
3-27, 29
CxP cortical plate 3-29
DD3V dorsal 3rd ventricle 66-74, 126-136, 138-139
DA dorsal hypothalamic area 19, 69, 133-134
DAx dens of the axis 30-31, 100
DC dorsal cochlear nucleus 32-34, 93-96, 159-160
DCDp dorsal cochlear nucleus, deep core 161-164
DCFu dorsal cochlear nucleus, fusiform layer
161-164
DCIC dorsal cortex of the inferior colliculus 90-93,
159-164
DCl dorsal part of claustrum 60-66, 68, 110-132
DCMo dorsal cochlear nucleus, molecular layer
160-165
dcs dorsal corticospinal tract 37-41
dcw deep cerebral white matter 51-52, 56, 64-66,
69, 71-73, 75, 79, 81-82, 112, 124-132, 135-140,
142-149
DEn dorsal endopiriform nucleus 12, 17-18, 50-75,
107-139
df dorsal fornix 62-63, 120-125
DG dentate gyrus 18-20, 24, 64-69, 73-80, 146
DH dorsal horn of spinal cord 37-41
dhc dorsal hippocampal commissure 64, 66,
127-145
DI dysgranular insular cortex 52-69, 109-132
DIEnt dorsal intermediate entorhinal cortex 81,
145-150
Dk nucleus of Darkschewitsch 26-29, 74-79,
143-149
DLEnt dorsolateral entorhinal cortex 74-81,
136-147
DLG dorsal lateral geniculate nucleus 18-24, 69-73,
131-140
DLL dorsal nucleus of the lateral lemniscus 32-37,
82-88, 153-157
DLO dorsolateral orbital cortex 48-49, 106
dlo dorsal lateral olfactory tract 2, 105
DLPAG dorsolateral periaqueductal gray 77-85,
87-92, 145-159
DM dorsomedial hypothalamic nucleus 17-21,
69-72, 74-75, 137-139
DMC dorsomedial hypothalamic nucleus, compact
part 71-72, 135-136, 166
DMD dorsomedial hypothalamic nucleus, dorsal part
73, 133-136
DMPAG dorsomedial periaqueductal gray 77-92,
144-161
DMSp5 dorsomedial spinal trigeminal nucleus
161-169
DMTg dorsomedial tegmental area 27-29, 83-88,
155-158
DMV dorsomedial hypothalamic nucleus, ventral part
73, 135-136
DP dorsal peduncular cortex 50-53, 109-115
dpal descending palatine artery 1-3, 6, 43-44
DpG deep gray layer of the superior colliculus
77-87, 143-158
DPGi dorsal paragigantocellular nucleus 28, 30-33,
89-94, 160-165
DPO dorsal periolivary region 156
DpWh deep white layer of the superior colliculus
78-87, 144-156
DR dorsal raphe nucleus 35-36, 83-84
DR3V dorsal recess of third ventricle 15-20
DRC dorsal raphe nucleus, caudal part 90, 158-161
DRD dorsal raphe nucleus, dorsal part 81-82, 85-89,
150-157
DRGn dorsal root ganglion 35, 37
DRI dorsal raphe, interfascicular part 83-86,
152-155
DRL dorsal raphe nucleus, lateral part 85-86,
152-155
DRV dorsal raphe nucleus, ventral part 81-82,
85-88, 149-157
DS dorsal subiculum 69, 71-77, 135-148
dsc dorsal spinocerebellar tract 101-103, 169,
173-176
dsc/oc dorsal spinocerebellar tract and olivocerebellar
tract 30-32, 163-168, 170-172
DTg dorsal tegmental nucleus 34-35, 89, 91-92
DTgC dorsal tegmental nucleus, central part 90,
158-159
DTgP dorsal tegmental nucleus, pericentral part 90,
157-161
dtgx dorsal tegmental decussation 149
DTM dorsal tuberomammillary nucleus 74-75,
139-140
DTr dorsal transition zone 108-109
DTT dorsal tenia tecta 48-55, 107-113
EE ependyma and subependymal layer 140
EA sublenticular extended amygdala 14-16, 63, 67,
131
EAC sublenticular extended amygdala, central part
64-66, 124-130
EAM sublenticular extended amygdala, medial part
18, 20-26, 65-66, 77-85, 128-130
ec external capsule 5-13, 53-62, 64-66, 69-70,
113-116, 118-134
ECIC external cortex of the inferior colliculus
34-35, 80-93, 150-166
Ect ectorhinal cortex 70-82, 133-151
ectd external carotid artery 91-92
ECu external cuneate nucleus 38-41, 97-101,
166-170
EGL external granular layer of developing cerebellum
31-40, 92-103, 153-176
ELS endolymphatic sac 28-35, 87, 89-99
eml external medullary lamina 65, 68, 126, 132-135,
137-138
emv emissary vein 28-29
EnO enamel organ 1-8, 42-44, 47, 49, 104, 110,
116-117
Ent entorhinal cortex 23-27
Entne entorhinal cortex, neuroepithelial zone 22-27
EP entopeduncular nucleus 18-19, 67-69, 130-134
EpiG epiglottis 17
EPl external plexiform layer of the olfactory bulb
1-2, 42-46, 104-107
EpP epipeduncular nucleus 74, 142-143
ESO episupraoptic nucleus 65-67, 127-130
Eth ethmoid thalamic nucleus 25, 46, 73-74,
140-142
EthB ethmoid bone 1-7, 42-44, 104-105, 108
EVe nucleus of origin of efferents of the vestibular
nerve 27-28, 87-89, 158-160
EW Edinger-Westphal nucleus 79-80, 148-149
ExOrb exorbital gland 74, 78
Eye eye 8-9, 42-43, 48-49, 53-54, 112
Eyelid eyelid 2-7, 42, 53
FF nucleus of the fields of Forel 25, 72-73, 139-140
f fornix 12-17, 19-22, 59-76, 121-143
Fat loculated brown fat 33-41
FC fasciola cinereum 65-66, 130-133, 135
FF fields of Forel 73, 138-139, 141-142
fi fimbria of the hippocampus 11-22, 62-73, 120-136
Fl flocculus 91-98, 157-166
FMag foramen magnum 30-31
fmi forceps minor of the corpus callosum 50-53,
110-114
fmj forceps major of the corpus callosum 67-74,
136-145
fr fasciculus retroflexus 20-31, 69-77, 132-146
Fr3 frontal cortex, area 3 50-52, 107-111
FrA frontal assocn cortex 46-47, 105-106
Fro frontal bone 2-14, 42-50, 52, 54-58, 60, 104-105,
108-110, 112-113, 116
Fro/Par frontal and parietal bones 86
Fu bed nucleus of stria terminalis, fusiform part
59-60, 121-122
FVe F cell group of the vestibular complex 95,
165-166
Gg7 genu of the facial nerve 27-28, 87, 89, 160
gcc genu of the corpus callosum 54, 56
Ge5 gelatinous layer of the caudal spinal trigeminal
nucleus 175
GeGl genioglossus muscle 1, 3, 5, 8
GeHy geniohyoid muscle 3, 5, 16-17
Gem gemini hypothalamic nucleus 25, 72, 139-141
GI granular insular cortex 54-69, 110-112, 114-132
Gi gigantocellular reticular nucleus 24-26, 28-36,
87-99, 159-169
GiA gigantocellular reticular nucleus, alpha part
24-28, 87-91, 159-164
GiV gigantocellular reticular nucleus, ventral part
29-30, 92-95, 165-166
Gl glomerular layer of the olfactory bulb 1-2, 42-46,
104-107
Gonial gonial process 72-75
GP globus pallidus 13-18, 59, 62-65, 67-69, 123-132
Gr gracile nucleus 1, 98-103, 169-176
gr gracile fasciculus 37-41, 103, 175-176
GrA granule cell layer of the accessory olfactory bulb
158
GrC granule cell layer of cochlear nuclei 92-94,
159-163
GrCb granule cell layer of the cerebellum 154-156,
162-164, 166-176
GrDG granular layer of the dentate gyrus 126-145
GrO granular cell layer of the olfactory bulb 2,
42-43, 47, 104-107
HHardG Harderian gland 43-47, 49-53, 104-105, 110,
112-114
Hb habenular nuclei 16-21
hbc habenular commissure 70-72, 136-137
HDB nucleus of the horizontal limb of the diagonal
band 11-13, 54-66, 117-130
Hem hemisphere of cerebellum 91-101
Hi hippocampal region 14-23, 70-72
hif hippocampal fissure 65, 76-77, 128-141
HMall handle of malleus 20-22, 80-81
HPtg hamulus of the pterygoid bone 14-15, 72,
74-75
HSCC horizontal semicircular canal 28-31, 90-96
HSCCA horizontal semicircular canal ampulla 26,
28, 85-87, 89
HStap handle of stapes 24
HyGl hyoglossus muscle 5, 8-12, 14
Hyoid hyoid bone 16-18, 20
II intercalated nuclei of the amygdala 16-18, 65,
67-68, 70-72, 128-129, 131, 133-136
I8 interstitial nucleus of the vestibulocochlear nerve
157-158
I9Gn inferior ganglion of the glossopharyngeal nerve
28, 90-94, 163
ia internal arcuate fibers 176
IAD interanterodorsal thalamic nucleus 63-64,
126-127
ialn inferior alveolar nerve 1, 5, 7-10, 63, 65, 67-69
IAM interanteromedial thalamic nucleus 65-66,
128-130
IAud internal auditory meatus 86-87
IB interstitial nucleus of the medulla 175-176
IC inferior colliculus 33, 36-41, 94-102
ic internal capsule 12-22, 60-78, 121-140
icf intercrural fissure 159-171
ICj islands of Calleja 55-59, 111-112, 114-121, 124
ICjM islands of Calleja, major island 54, 113,
116-117
icp inferior cerebellar peduncle (restiform body)
29-35, 91-93, 95-99, 160-166
ictd internal carotid artery 8-12, 14-21, 23, 69,
71-82, 85, 87, 89-92, 129-132, 134-135
ICx intermediate cortical layer 4-28
IEn intermediate endopiriform nucleus 50-60,
62-64, 108-120, 121-126
IF interfascicular nucleus 28-30, 76-80, 144-148
IG indusium griseum 8-12, 54-63, 114-135
IGL intergeniculate leaf 18-24, 69-73, 132-141
ijugv internal jugular vein 21, 23, 28-30, 96-97
IL infralimbic cortex 50-53, 109-114
ILL intermediate nucleus of the lateral lemniscus
29-31, 79-82, 151-154
IM intercalated amygdaloid nucleus, main part
130-131
IMA intramedullary thalamic area 70-72, 132,
134-139
IMD intermediodorsal thalamic nucleus 65-69,
129-135
IMG amygdaloid intramedullary gray 72, 131-134
iml internal medullary lamina 133-134, 136
In intercalated nucleus of the medulla 35, 37-38,
95-96, 167-168
InC interstitial nucleus of Cajal 28-30, 74-81,
144-149
Inc incus 22-23, 27, 77, 81
Inf infundibulum 139
InfM inferior meatus 1, 42-45
InG intermediate gray layer of the superior colliculus
76-87, 143-158
InPl inner plexiform layer of the retina 2-4, 6-8,
43-46, 49-53, 104-105, 108-110, 112
Ins insular cortex 8-16
Int interposed cerebellar nucleus 93-98
IntA interposed cerebellar nucleus, anterior part
23-24, 37-39, 161-164
IntDL interposed cerebellar nucleus, dorsolateral
hump 162-164
IntP interposed cerebellar nucleus, posterior part
37-38, 163-167
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IntPPC interposed cerebellar nucleus, posterior
parvicellular part 165
InWh intermediate white layer of the superior
colliculus 74, 76-87, 143-158
IO inferior olivary nucleus 29-30
IOA inferior olive, subnucleus A of medial nucleus
99-101, 170-174
IOB inferior olive, subnucleus B of medial nucleus
99-102, 169-173
IObCa inferior oblique capitis muscle 31, 34
IOBe inferior olive, beta subnucleus 99-101,
168-173
IOC inferior olive, subnucleus C of medial nucleus
99-101, 169-173
IOD inferior olive, dorsal nucleus 31-35, 95-100,
164-171
IODM inferior olive, dorsomedial cell group
166-167
IOK inferior olive, cap of Kooy of the medial nucleus
99-101, 171-173
IOM inferior olive, medial nucleus 31-36, 94-98,
164-168
iopha inferior ophthalmic artery 8
IOPr inferior olive, principal nucleus 31-33, 94-98,
165-170
iorb infraorbital artery 1-3, 50-51, 53-54, 56-58
IOrbF infraorbital foramen 53
IOVL inferior olive, ventrolateral protrusion
168-170
IP interpeduncular nucleus 27, 32
IPA interpeduncular nucleus, apical subnucleus
79-81, 149-150
IPAC interstitial nucleus of the posterior limb of the
anterior commissure 58-65, 120-127
IPC interpeduncular nucleus, caudal subnucleus
31, 78-80, 145-150
IPDL interpeduncular nucleus, dorsolateral
subnucleus 78-80, 147-149
IPDM interpeduncular nucleus, dorsomedial
subnucleus 147-148
IPF interpeduncular fossa 27, 30-31, 76-78, 145-146
IPI interpeduncular nucleus, intermediate subnucleus
78-80, 148-150
IPit intermediate lobe of the pituitary 18-19, 77-79,
143
IPL interpeduncular nucleus, lateral subnucleus 31,
46, 78, 104, 146-149
IPl internal plexiform layer of the olfactory bulb
1-2, 42-45, 106
IPR interpeduncular nucleus, rostral subnucleus
77-79, 145-149
IRec inferior rectus muscle 7-8, 51, 54-56, 112
Iris iris 4, 6, 45, 47
IRt intermediate reticular nucleus 26-36, 87-103,
157-176
IS inferior salivatory nucleus 30, 92-94, 162-164
IVF interventricular foramen 12-14, 62-63, 123
JJPLH juxtaparaventricular part of lateral
hypothalamus 65-67, 129-130
JugF jugular foramen 30-31, 93-97, 162-163, 167
KKF Kˆlliker-Fuse nucleus 30-32, 84-87, 153-159
LLA lateroanterior hypothalamic nucleus 12-14,
65-66, 127-130
La lat amygdaloid nucleus 16-20, 68-75
LAcbSh lateral accumbens shell 56-57, 117
LaDL lateral amygdaloid nucleus, dorsolateral part
130-137
Lar larynx 20
LarPh laryngopharynx 18, 20-21
Lat lateral (dentate) cerebellar nucleus 35, 37-39,
93-97, 159-164
LatPC lateral cerebellar nucleus, parvicellular part
93-94, 161-164
LaVL lateral amygdaloid nucleus, ventrolateral part
133-134
LaVM lateral amygdaloid nucleus, ventromedial part
133-139
LC locus coeruleus 32, 34-35, 89-91, 158-162
lc lateral column of the spinal cord 33-39
LD laterodorsal thalamic nucleus 16, 65-66
Ld lambdoid septal zone 57, 117, 119
LDDM laterodorsal thalamic nucleus, dorsomedial
part 67-68, 126-132
LDTg laterodorsal tegmental nucleus 32-35, 86-92,
155-161
LDTgV laterodorsal tegmental nucleus, ventral part
87-89, 155-157
LDVL laterodorsal thalamic nucleus, ventrolateral
part 67-68, 126-133
Lens lens 2-6, 45, 47, 50-51, 105, 108-109
LEnt lateral entorhinal cortex 82, 133-135, 148-150
lfp longitudinal fasciculus of the pons 24-25, 77,
79-81, 147-152
lga lingual artery 3, 5-12
LgCa longus capitis muscle 20-24, 82, 87, 89
lgn lingual nerve 68
LgsCa longissimus capitis muscle 28-31, 33-41
LH lateral hypothalamic area 67, 75
LHb lateral habenular nucleus 22, 64-66, 68-71,
127-128
LHbL lateral habenular nucleus, lateral part
129-131, 133, 135-137
LHbM lateral habenular nucleus, medial part
129-137
Li linear nucleus of the medulla 95-96, 166-168
ll lateral lemniscus 27, 79-83, 86-87, 148-156
LM lateral mammillary nucleus 23-24, 76-77,
141-144
LMol lacunosum moleculare layer of the
hippocampus 128-142
LO lateral orbital cortex 48-51, 105-110
lo lateral olfactory tract 2-13, 46-48, 51-52, 54-64,
105, 107-125
LOT nucleus of the lateral olfactory tract 14-15, 129
LOT1 nucleus of the lateral olfactory tract, layer 1
66, 127-128
LOT2 nucleus of the lateral olfactory tract, layer 2
65, 67
LP lateral posterior thalamic nucleus 17-30, 72-75,
139-145
LPAG lateral periaqueductal gray 77-92, 145-160
LPal levator palati muscle 17
LPB lateral parabrachial nucleus 32, 34-35, 86-90,
92-93, 158-161
LPBC lateral parabrachial nucleus, central part
156-157
LPBE lateral parabrachial nucleus, external part
33, 87-89, 156-160
LPBI lateral parabrachial nucleus, internal part
160-161
LPBS lateral parabrachial nucleus, superior part
156-157
LPGi lateral paragigantocellular nucleus 23-32,
87-95, 97, 158-167
LPLR lateral posterior thalamic nucleus, laterorostral
part 69-71, 134-138
LPMR lateral posterior thalamic nucleus,
mediorostral part 69-71, 133-138
LPO lateral preoptic area 11-12, 58-64, 119-126
LPS levator palpebrae superioris muscle 4-7, 49,
51-52, 108-110
LPtA lateral parietal association cortex 70, 129-131
LPtg lateral pterygoid muscle 10-16, 58-67, 69-73
LR4V lateral recess of the 4th ventricle 30-38, 90-98,
157-168
LRec lateral rectus muscle 7-9, 54-57, 112
LReCa lateral rectus capitis muscle 22-26
LRt lateral reticular nucleus 33-36, 97-102, 168-174
LRtPC lateral reticular nucleus, parvicellular part
97-99, 169-173
LRtS5 lateral reticular nucleus, subtrigeminal part
168-171
LS lateral septal nucleus 5-11
LSD lateral septal nucleus, dorsal part 53-62,
114-124
LSI lateral septal nucleus, intermediate part 50-61,
112-122
LSO lateral superior olive 85-86, 155-157
LSS lateral stripe of the striatum 54-56, 58-62,
116-128
LSV lateral septal nucleus, ventral part 53-60,
113-121
LT lateral terminal nucleus of the accessory optic tract
74-76, 142
LTer lemina terminalis 11, 59-61, 122-123
Lth lithoid nucleus 26, 73-75, 141-143
LV lateral ventricle 3-26, 51-65, 68, 73-76, 78, 80,
112-137, 139-146
LVe lateral vestibular nucleus 30-31, 91-93, 161-164
LVPO lateroventral periolivary nucleus 84-86,
154-157
MM1 primary motor cortex 49-69, 107-128
M2 secondary motor cortex 48-69, 107-128
m5 motor root of the trigeminal nerve 19, 25, 27,
75-79, 81-82, 143, 146-153, 155-157
MA3 medial accessory oculomotor nucleus 28-30,
33, 77-79, 145-147
Mall malleus 20-21, 23, 77-81, 84-85
Man mandible 1-14, 54-62, 70, 72
masa masseteric artery 6-7, 10-11
MasM masseter muscle 1-14, 42-47, 49-50, 54-61,
63-65, 69-72, 95-96
masn masseteric nerve 68-70, 74
masv masseteric vein 72
MB mammillary body 22
Mc Meckel’s cartilage 1, 3, 5-19, 65-76
mcer middle cerebral artery 5-7, 63, 123-128
MCLH magnocellular nucleus of the lateral
hypothalamus 69, 71-73, 132-135
mcp middle cerebellar peduncle 25, 29-38, 78-83,
85-92, 147-155
MCPC magnocellular nucleus of the posterior
commissure 26, 73-75, 140-144
MCPO magnocellular preoptic nucleus 11-13,
58-66, 119-130
MD mediodorsal thalamic nucleus 16-22, 64-65,
126-129
MDC mediodorsal thalamic nucleus, central part
68, 131-133
MdD medullary reticular nucleus, dorsal part 37-38,
41, 100-103, 170-176
MDL mediodorsal thalamic nucleus, lateral part
66-69, 130-135
MDM mediodorsal thalamic nucleus, medial part
66-67, 69, 130-136
MdV medullary reticular nucleus, ventral part
35-36, 100-103, 170-176
ME median eminence 22, 134
Me medial amygdaloid nucleus 16-20
Me5 mesencephalic trigeminal nucleus 34-35, 91-92,
155, 160-161
me5 mesencephalic trigeminal tract 34, 36, 91
MeA medial amygdaloid nucleus, anterior part
14-15
MeAD medial amygdaloid nucleus, ant dorsal 66-70,
128-133
MeAV medial amygdaloid nucleus, anteroventral part
17, 67-70, 130-132
Med medial (fastigial) cerebellar nucleus 39, 94-99,
162-167
MedDL medial cerebellar nucleus, dorsolateral
protuberance 165-167
MedL medial cerebellar nucleus, lateral part 164-165
MEE medial eminence, external layer 18, 74-76,
135-138
MEI medial eminence, internal layer 18, 74-76,
135-138
MEnt medial entorhinal cortex 81-82, 145-150
MePD medial amygdaloid nucleus, posterodorsal part
70-73, 133-137
MePV medial amygdaloid nucleus, posteroventral part
71-73, 133-134, 137
mfb medial forebrain bundle 17-25, 56, 112,
116-118, 132-133, 137-139
MG medial geniculate nucleus 25-30, 74
MGD medial geniculate nucleus, dorsal part 75-78,
140-145
MGM medial geniculate nucleus, medial part 73,
75-78, 141-143
MGV medial geniculate nucleus, ventral part 75-78,
140-145
MHb medial habenular nucleus 22, 64-69, 71,
126-133, 135-137
Mi mitral cell layer of the olfactory bulb 1-2, 42-46,
104-106
MiA mitral cell layer of the accessory olfactory bulb
104-105
MidM middle meatus 1-3, 43-50, 108, 110
MiTg microcellular tegmental nucleus 34-35, 81-88,
150-155
ML medial mammillary nucleus, lateral part 23-26,
74-76, 141-145
ml medial lemniscus 18-28, 30-31, 70-77, 79, 81,
85-86, 132-134, 136-137, 139-160, 162-173
mlf medial longitudinal fasciculus 27-36, 78-86, 88,
94, 145-176
mlx medial lemniscus decussation 101, 175
MM medial mammillary nucleus, medial part
23-26, 74-76, 141-144
MnA median accessory nucleus of the medulla 102,
175-176
MnM medial mammillary nucleus, median part
74-75, 141-142
MnPO median preoptic nucleus 11, 58, 120-122
MnR median raphe nucleus 26-30, 79-85, 150-155
MO medial orbital cortex 48-49, 105-108
MoCb molecular layer of the cerebellum 154-156,
161-162, 166-176
MoDG molecular layer of the dentate gyrus 126-145
mp mammillary peduncle 24-25, 143-144, 146-147
MPA medial preoptic area 7, 58-64, 120-126
MPB medial parabrachial nucleus 31-32, 34-35,
86-92, 156-157, 159-161
MPBE medial parabrachial nucleus external part
158
MPL medial paralemniscial nucleus 28-31, 80-85,
148-154
MPO medial preoptic nucleus 12
MPOC medial preoptic nucleus, central part 62, 124
MPOL medial preoptic nucleus, lateral part 59-64,
122-127
MPOM medial preoptic nucleus, medial part 60-64,
124-127
MPT medial pretectal nucleus 24-25, 73-74, 139-142
MPtA medial parietal association cortex 70, 129-131
MPtg medial pterygoid muscle 11-14, 64-74
MRe mammillary recess of the 3rd ventricle 25,
140-142
MRec medial rectus muscle 3-7, 49, 54-55, 104, 108,
110, 112
mRt mesencephalic reticular formation 150
MS medial septal nucleus 5-10, 53-58, 114-120
MSO medial superior olive 86, 154-157
Mst mastoid process of temporal bone 28
MT medial terminal nucleus of the accessory optic
tract 77, 144-145
mt mammillothalamic tract 23, 65-74, 127-139
mtg mammillotegmental tract 24-31, 73-76,
140-147
MTu medial tuberal nucleus 16-21, 70-74, 133-140
MVe medial vestibular nucleus 28-38, 95-99,
166-168
MVeMC medial vestibular nucleus, magnocellular
part 88-94, 159, 161-165
MVePC medial vestibular nucleus, parvicellular part
88-94, 159-165
MVPO medioventral periolivary nucleus 22, 81-86,
151-157
Mx matrix region of the medulla 94-95, 97-103,
165-176
mxa maxillary artery 70
MxB maxillary bone (maxilla) 1-7, 9, 42-47, 55-56,
104
mxv maxillary vein 14, 73
MyHy mylohyoid muscle 1, 3, 5-9
MZMG marginal zone of the medial geniculate 142
XX Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
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NNasC nasal cavity 1-17, 42-52, 54-58, 60-63, 65-69,
72-75, 78, 104-105, 108, 110, 112, 116, 121
ne neuroepithelium 1-10, 26, 28-29, 42-58, 60,
62-65, 67-69, 75-76, 79-80, 85-87, 92-98, 104-132,
134-137, 156, 158
ns nigrostriatal bundle 124, 132-133, 137-139, 141
NSpt nasal septum 1-7, 42-50, 52, 104-105, 108, 110
Nv navicular nucleus of the basal forebrain 50-52,
111-113
Oocb olivocochlear bundle 159
Occ occipital bone 29-37, 39-41, 97-100, 167
occ occipital artery 92-93, 95-97
occs occipital sinus 30, 32-38, 99-100
och optic chiasm 10-13, 64-65, 125-127
OF optic fiber layer of the retina 2-7, 43-46, 49-53,
104-105, 108-110
OmHy omohyoid muscle 24
ON olfactory nerve layer 1-2, 42-43, 46, 104-106
Op optic nerve layer of the superior colliculus
76-87, 143-159
OPC oval paracentral thalamic nucleus 69-70,
135-136
OpD optic disc 4-6, 51
opha ophthalmic artery 9
ophv ophthalmic vein 4-7, 46, 112
OPT olivary pretectal nucleus 23-27, 72-75, 139-143
opt optic tract 12-21, 24, 66-71, 74-75, 128-137,
140-141
OptF optic foramen 8, 55-56, 112-116
Or oriens layer of the hippocampus 63, 127-142
Oral oral cavity 1-14, 17, 43-49, 52, 54-58, 60-63,
65-68, 71, 78, 80-85
OT nucleus of the optic tract 23, 25-28, 74-76,
140-143
Otic otic ganglion 16-17, 72-73
OV olfactory ventricle (olfactory part of lateral
ventricle) 1-2, 42-50, 104-111
OvalW oval window 23, 25, 72, 84
PP5 peritrigeminal zone 84-86, 153-155, 157
P7 perifacial zone 23, 25-26, 87, 158, 160-162, 164
Pa paraventricular hypoth nucleus 14-18
Pa4 paratrochlear nucleus 35, 84-85, 150, 153-154
Pa5 paratrigeminal nucleus 98, 100, 168-170
PaAP paraventricular hypothalamic nucleus, anterior
parvicellular part 13, 61-63, 124-126
PaC paracommissural nucleus of the posterior
commissure 74, 143-144
PaDC paraventricular hypothalamic nucleus, dorsal
cap 68, 130-131
PAG periaqueductal gray 26-38, 72, 74, 93-97,
139-144
Pal palatine bone 5-11, 48-52, 55-61, 64-65
PalGl palatoglossus muscle 14
PaLM paraventricular hypothalamic nucleus, lateral
magnocellular part 65-67, 128-130
PaMM paraventricular hypothalamic nucleus, medial
magnocellular part 64-65, 127
PaMP paraventricular hypothalamic nucleus, medial
parvicellular part 64-68, 127-131
PaPo paraventricular hypothalamic nucleus, posterior
part 18, 68, 131
PaR pararubral nucleus 30, 32-33, 36, 78-81,
147-149
ParB parietal bone 31, 33-36, 38
ParP parietal plate 16-23, 26-28, 30, 78-81, 85-86,
92-93, 95, 97
PaS parasubiculum 25, 81-82, 144-152
PaV paraventricular hypothalamic nucleus, ventral
part 64-67, 127-130
PaXi paraxiphoid nucleus of thalamus 15, 18, 63-68,
126-133
PB parabrachial nucleus 36
PBG parabigeminal nucleus 34, 82-87, 150-155
PBP parabrachial pigmented nucleus of the VTA
27-31, 74-80, 141-149
PC paracentral thalamic nucleus 23, 63-64, 67-69,
127-131, 133-134
pc posterior commissure 24, 26, 73-74, 138-144
pcer posterior cerebral artery 20, 24-26, 76-77, 148
PCom nucleus of the posterior commissure 27,
75-76, 141-144
PCRt parvicellular reticular nucleus 26-29, 31-33,
35-36, 87, 92-99, 162-169
PCRtA parvicellular reticular nucleus, alpha part
26-28, 88-91, 158-161
pcuf preculminate fissure 161
PDig posterior belly of the digastric muscle 20-21
PDPO posterodorsal preoptic nucleus 61-62,
123-124
PDR posterodorsal raphe nucleus 85-86, 152-154
PDTg posterodorsal tegmental nucleus 89-91,
160-161
Pe periventricular hypothalamic nucleus 61-69, 73,
122-132, 134-138
PeF perifornical nucleus 20-21, 70-73, 133-137
PeFLH perifornical part of lateral hypothalamus
68-73, 132-138
PF parafascicular thalamic nucleus 22-25, 70-72,
136-140
PFl paraflocculus 91-102, 154-167
PFlCv parafloccular cavity 92, 94-95, 167
pfs parafloccular sulcus 96-101, 156-167
PH posterior hypothalamic nucleus 22-24, 70-73,
136-141
PHA posterior hypothalamic area 25-26, 72-74,
139-142
PHD posterior hypothalamic area, dorsal part 69,
71, 134-136
Pi pineal gland 24, 26-27, 75-77, 144-148
pica posteroinferior cerebellar artery 33, 35
PIF parainterfascicular nucleus of the VTA 28-29,
77-79, 146-149
Pig pigment layer of the eye 2-9, 42-44, 54-55,
104-105, 108-110, 112-114
PIL posterior intralaminar thalamic nucleus 26,
74-78, 141-145
Pinna pinna of the ear 28, 30-31
Pir piriform cortex 3-21, 49-64, 67, 71
Pir1 piriform cortex, layer 1 65-66, 68-70, 72-75,
108-139
Pk Purkinje cell layer of the cerebellum 154-156,
161-163, 166-176
PLCo posterolateral cortical amygdaloid nucleus
18-20, 70-75, 134-140
PLCo1 posterolateral cortical amygdaloid nucleus,
layer 1 133
PLd paralambdoid septal nucleus 56-57
plf posterolateral fissure 91-97, 155-166
PLH peduncular part of lateral hypothalamus
13-26, 65-68, 70-74, 76, 127-132, 136-143
PLi posterior limitans thalamic nucleus 73-76,
141-145
PlPAG pleoglial periaqueductal gray 77-78, 143-147,
149-152
PLV perilemniscal nucleus, ventral part 151
PM paramedian lobule 102-103, 163-172
pm principal mammillary tract 24, 140-143
PMCo posteromedial cortical amygdaloid nucleus
19-20, 71-76, 78-80, 133-143
PMD premammillary nucleus, dorsal part 73-76,
139-141
PMn paramedian reticular nucleus 165
PMnR paramedian raphe nucleus 26-32, 34, 80-85,
150-155
pms paramedian sulcus 100-101, 170-172
PMV premammillary nucleus, ventral part 74-76,
139-140
PN paranigral nucleus of the VTA 79, 146-148
Pn pontine nuclei 24-25, 27, 77-81, 146-153
PnC pontine reticular nucleus, caudal part 24-26,
82-86, 154-158
PnO pontine reticular nucleus, oral part 24-32,
79-83, 85-86, 148-155
PnR pontine raphe nucleus 86, 156-157
PnV pontine reticular nucleus, ventral part 85,
156-157
Po posterior thalamic nuclear group 18-25, 27-28,
68-77, 132-145
PoDG polymorph layer of the dentate gyrus
128-144
POHy preoptic hypothalamus 8-11
PoMn posteromedian thalamic nucleus 70, 136
Post postsubiculum 73-81, 142-150
PoT posterior thalamic nuclear group, triangular part
26, 75-78, 142-145
PP peripeduncular nucleus 75, 142-143
ppf prepyramidal fissure 168-174
PPit posterior lobe of pituitary 18-19, 77-78, 143
PPT posterior pretectal nucleus 25-26, 75-76,
142-143
PPy parapyramidal nucleus 162-163
PR prerubral field 22-25, 70-74, 137-143
Pr prepositus nucleus 31-35, 89-96, 160-167
Pr5 principal sensory trigeminal nucleus 23-26,
28-29, 83-85, 87-89, 151-154, 159-160
Pr5DM principal sensory trigeminal nucleus,
dorsomedial part 155-158
Pr5VL principal sensory trigeminal nucleus,
ventrolateral part 155-158
PrBo pre-Botzinger complex 95-96, 166
PrC precommissural nucleus 23-24, 71-73, 138-141
PrCnF precuneiform area 34, 81-82, 84-85, 150-155
PrEW pre-Edinger-Westphal nucleus 27, 76-78,
145-147
prf primary fissure 162-165
PRh perirhinal cortex 70-82, 133-152
PrL prelimbic cortex 48-53, 106-114
PrLSp pre lateral spinal 100, 170-175
PrS presubiculum 25, 27, 75-81, 86, 145-149
PrTh prethalamus (prosomere 3) 15-18, 20-21,
25-26
PS parastrial nucleus 59-60, 121-122
psa posterior superior alveolar artery 1, 3
PSCC posterior semicircular canal 29-34, 95-97, 99
PSCCA posterior semicircular canal ampulla 29
psf posterior superior fissure 155, 157, 159-163,
165-169
PSol parasolitary nucleus 98-100, 168-171
PSph presphenoid bone 7-13, 15-16, 54-64, 112-118,
121
PSphW presphenoid wing 2-16, 53-57, 109, 116
PSTh parasubthalamic nucleus 22, 25, 71-76,
136-140
PT paratenial thalamic nucleus 14-15, 62-64,
123-129
Pt parietal cortex 71-75, 77
Ptd parotid gland 18, 99-100
PTe paraterete nucleus 68, 131-136
PTg pedunculopontine tegmental nucleus 32-34,
81-86, 150-157
Ptg pterygoid process of the sphenoid bone 11-15,
66-69, 71
ptgcn nerve of the pterygoid canal 14, 77, 121
ptgpal pterygopalatine nerve 13, 58-59, 61-65,
67-68, 70-85, 87, 121, 146-147, 150-152
PtPC parietal cortex, posterior area, caudal part
136-139
PtPD parietal cortex, posterior area, dorsal part 132,
134-136
PtPR parietal cortex, posterior area, rostral part
132-135
PV paraventricular thalamic nucleus 17, 21, 66-68,
71, 130-132
PVA paraventricular thalamic nucleus, anterior part
14-16, 62-65, 123-129
PVP paraventricular thalamic nucleus, posterior part
19-20, 69-70, 133-137
Py pyramidal cell layer of the hippocampus 126-142
py pyramidal tract 25, 28-31, 82-86, 88-96, 99-101,
153-176
pyx pyramidal decussation 35-36, 102-103, 176
RR red nucleus 30, 32, 75-76
Rad radiatum layer of the hippocampus 126-142
RAmb retroambiguus nucleus 100-102, 172-175
RAPir rostral amygdalopiriform area 71-73, 135-137
Rath Rathke’s pouch 19
Rbd rhabdoid nucleus 84, 152-153
Rc Reichert’s cartilage 22-24, 92
RCh retrochiasmatic area 15, 68, 70, 131
RChL retrochiasmatic area, lateral part 68-69,
131-133
RCPMj rectus capitis posterior major muscle 35-41
Re reuniens thalamic nucleus 15-18, 63-68, 124-134
ReIC recess of the inferior colliculus 160-161
REth retroethmoid nucleus 25, 74, 142
rf rhinal fissure 6-7, 20, 22, 52-53, 55-58, 60-66,
68-75, 77-78, 82, 108, 110, 111-121, 125-129, 131-
136, 141-148
RGn retinal ganglion cell layer of the retina 2-4, 6-7,
43-46, 49-53, 104-105, 108-110
Rh rhomboid thalamic nucleus 16-17, 65-68,
127-134
RI rostral interstitial nucleus of medial longitudinal
fasciculus 25-26, 72, 140-142
RIP raphe interpositus nucleus 23-24, 82-89,
154-159
RL retrolemniscal nucleus 148, 157-158
RLi rostral linear nucleus of the raphe 27-32, 76,
78-80, 143-147
RMC red nucleus, magnocellular part 31, 33, 77-81,
145-149
RMg raphe magnus nucleus 24-28, 85-92, 156-164
Ro nucleus of Roller 35, 95-98, 165-169, 172
ROb raphe obscurus nucleus 30-34, 36, 93-98, 100,
163-169, 171-174
RPa raphe pallidus nucleus 22-30, 32-35, 85-98, 100,
156-167, 170-174
RPC red nucleus, parvicellular part 26-29, 77-78,
144-147
RPF retroparafascicular nucleus 26, 73, 141
RR retrorubral nucleus 32-33, 81-82, 151-153
RRe retrouniens area 20-24, 69, 135-136
RRF retrorubral field 32-33, 80-82, 149
RRF/A8 retrorubral field and A8 dopamine cells
34, 150-152
rs rubrospinal tract 24-25, 34, 83, 85-86, 88, 93-95,
97, 99, 101-103, 149-176
RSD retrosplenial dysgranular cortex 22-26, 63-82,
127-152
RSG retrosplenial granular cortex 22-26, 148-149
RSGa retrosplenial granular cortex, a region 71-82,
138-147
RSGb retrosplenial granular cortex, b region 69-80,
132-145
RSGc retrosplenial granular cortex, c region 63-78,
127-141
Rt reticular thalamic nucleus 14-19, 28-32, 63-69,
73-76, 78-80, 124-134, 140, 142-149, 151-153
RtSt reticluostrial nucleus 17, 63-67, 124-130
RtTg reticulotegmental nucleus of the pons 25,
79-83, 150-157
RtTgL reticulotegmental nucleus of the pons, lateral
part 84, 157
RtTgP reticulotegmental nucleus of the pons,
pericentral part 156
RVL rostroventrolateral reticular nucleus 163, 165
RVRG rostral ventral respiratory group 97-98, 100,
167-172
SS subiculum 21-22, 24, 77-80
S1 primary somatosensory cortex 71, 133-134
S1BF primary somatosensory cortex, barrel field
62-70, 123-132
S1DZ primary somatosensory cortex, dysgranular
zone 55-70, 113-130
S1DZO primary somatosensory cortex, oral
dysgranular zone 59, 117-119
S1FL primary somatosensory cortex, forelimb region
55-56, 58-65, 113-126
S1HL primary somatosensory cortex, hindlimb region
57, 62-68, 121-128
S1J primary somatosensory cortex, jaw region
51-59, 109-119
S1Sh primary somatosensory cortex, shoulder region
66-67, 127-129
S1Tr primary somatosensory cortex, trunk region
68-70, 129
S1ULp primary somatosensory cortex, upper lip
region 59-62, 66-69, 117-130
S2 secondary somatosensory cortex 60, 63-70,
113-132
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s5 sensory root of the trigeminal nerve 19, 76,
78-79, 81-83, 143, 146-154
S9Gn superior ganglion of the glossopharyngeal nerve
93-97, 162-163, 167
Sacc saccule 23-26
Sag sagulum nucleus 86, 89-92, 156
SalPh salpingopharyngeus muscle 20-21
SC superior colliculus 27-41, 75, 88-98, 142
Sc scaphoid thalamic nucleus 73, 140-141
Scap scapula 24, 34, 37
scc splenium of the corpus callosum 66, 135
SCh suprachiasmatic nucleus 11-14, 64-65, 67-68,
126-127
SChDL suprachiasmatic nucleus, dorsolateral part
66, 128-130
SChVM suprachiasmatic nucleus, ventromedial part
66, 127-130
SCM superior constrictor muscle of the pharynx 82
SCO subcommissural organ 72-74, 138-141
scp superior cerebellar peduncle (brachium
conjunctivum) 21, 28, 31-37, 76-77, 84, 87-92,
130, 136-137, 145-149, 154-164
ScTy scala tympani 80-87, 89-91, 153-154
ScVe scala vestibuli 81-86, 153-154
sf secondary fissure 152, 169-175
SFi septofimbrial nucleus 58-62, 120-125
SFO subfornical organ 13-14, 62, 123-126
SG suprageniculate thalamic nucleus 75-78, 142-145
SGe supragenual nucleus 28-30, 88-89, 159-160
SHi septohippocampal nucleus 50-58, 112-116
SHy septohypothalamic nucleus 10-12, 58, 60-61,
119-123
SIB substantia innominata, basal part 54-64,
116-127
sig sigmoid sinus 99
Sim simple lobule 91-99, 155-168
sl sulcus limitans 21, 23, 31, 34, 37-38
SLu stratum lucidum of the hippocampus 126-142
SM nucleus of the stria medullaris 14-15, 63-64,
126-129
sm stria medullaris of the thalamus 14-20, 62-70,
124-134
SMT submammillothalamic nucleus 71, 73, 138
SMV superior medullary velum 162
SN substantia nigra 26-33
SNCD substantia nigra, compact part, dorsal tier
74-80, 140-149
SNCM substantia nigra, compact part, medial tier
76, 78-79, 146-147, 149
SNCV substantia nigra, compacta part, ventral tier
77, 79, 145, 149
SNL substantia nigra, lateral part 76-77, 79,
142-146, 148
SNR substantia nigra, reticular part 74-76, 78-80,
139-149
SO supraoptic nucleus 14-16, 65-69, 127-131
SOb superior oblique muscle 2-4, 6, 46, 104, 109
SObCa superior oblique capitis muscle 30-31, 33-34
SOl superior olivary nucleus. lateral part 23
Sol nucleus of the solitary tract 30-41, 89-103
sol solitary tract 30-32, 34-35, 37-38, 40-41, 95-103,
162-167, 170-174
SolC nucleus of the solitary tract, commissural part
171-176
SolCe nucleus of the solitary tract, central part
168-170
SolDL solitary nucleus, dorsolateral part 163,
167-173
SolDM nucleus of the solitary tract, dorsomedial part
164-166
SolG nucleus of the solitary tract, gelatinous part
168-170
SolIM nucleus of the solitary tract, intermediate part
162-174
SolL nucleus of the solitary tract, lateral part 167,
174
SolM nucleus of the solitary tract, medial part
162-176
SolRL nucleus of the solitary tract, rostrolateral part
162-163
SolV solitary nucleus, ventral part 164-174
SolVL nucleus of the solitary tract, ventrolateral part
93, 164-173
SOR supraoptic nucleus, retrochiasmatic part 14
sox supraoptic decussation 12-19, 64-69, 71,
128-137, 139
sp5 spinal trigeminal tract 27-35, 37-41, 84-92,
94-103, 152, 155-176
Sp5C spinal trigeminal nucleus, caudal part 37-41,
96-103, 171-176
Sp5I spinal trigeminal nucleus, interpolar part
27-36, 91-101, 161-173
Sp5O spinal trigeminal nucleus, oral part 23-29,
89-90, 161-163
SPa subparaventricular zone of the hypothalamus
64-68, 127-131
SPF subparafascicular thalamic nucleus 22, 70-71,
137-139
SPFPC subparafascicular thalamic nucleus,
parvicellular part 138-143
Sph sphenoid nucleus 90-92, 160-161
SphPal sphenopalatine ganglion 4-11, 13, 52-59,
61-64, 110, 112
SplCa splenius capitis muscle 34-41
SPO superior paraolivary nucleus 85-86, 155-157
Spt septum 4
SPTg subpeduncular tegmental nucleus 33, 83-84,
152-156
Sptne septum neuroepithelium 5-10
SpVe spinal vestibular nucleus 29-39, 92-98, 161-168
SRec superior rectus muscle 3-8, 49, 51-56, 108-110,
112
SSp supraspinal nucleus 103
sss superior sagittal sinus 75-79
ST bed nucleus of the stria terminalis 10-13
st stria terminalis 12-19, 62-73, 121-136
StA strial part of the preoptic area 59-60, 121-122
Stap stapedius bone 84-86
StapM stapedius muscle 24-26, 86-87, 89-92
STD bed nucleus of the stria terminalis, dorsal part
122
Stg stigmoid hypothalamic nucleus 67, 132
STh subthalamic nucleus 21-24, 70-74, 135-139
StHy striohypothalamic nucleus 13, 23, 59-64,
123-126
STI bed nucleus of the stria terminalis, intermediate
division 121-122
STIA bed nucleus of the stria terminalis,
intraamygdaloid division 19-20, 69-73, 132-136
STLD bed nucleus of the stria terminalis, lateral
division, dorsal part 59-60, 120-121
STLI bed nucleus of the stria terminalis, lateral
division, intermediate part 61, 122-123
STLJ bed nucleus of the stria terminalis, lateral
division, juxtacapsular part 59-60, 121-122
STLP bed nucleus of the stria terminalis, lateral
division, posterior part 59-62, 120-124
STLV bed nucleus of the stria terminalis, lateral
division, ventral part 59-60, 121-123
StM sternomastoid muscle 20-21, 23-24, 26, 92-97
STMA bed nucleus of the stria terminalis, medial
division, anterior part 58-60, 119-120
STMAL bed nucleus of the stria terminalis, medial
division, anterolateral part 121-122
STMAM bed nucleus of the stria terminalis, medial
division, anteromedial part 121-122
STMP bed nucleus of the stria terminalis, medial
division, posterior part 63-64, 123, 125-127
STMPI bed nucleus of the stria terminalis, medial
division, posterointermediate part 61-62,
123-124
STMPL bed nucleus of the stria terminalis, medial
division, posterolateral part 61-63, 123-124
STMPM bed nucleus of the stria terminalis, medial
division, posteromedial part 61-62, 123-124
STMV bed nucleus of the stria terminalis, medial
division, ventral part 59-60, 121-122
str superior thalamic radiation 69-70, 135, 137-141
stv superficial temporal vein 3-4, 6-11
StyGl styloglossus muscle 10-12, 14, 16, 20-21
StyHy stylohyoid muscle 20-21
StyMF stylomastoidforamen 90
StyPh stylopharyngeus muscle 20-21
Su3 supraoculomotor periaqueductal gray 32-34,
80-82, 149-150
Su3C supraoculomotor cap 32, 34, 80-82, 149
Su5 supratrigeminal nucleus 30-31, 85-88, 155-158
Sub submedius thalamic nucleus 66-69, 129,
131-134
SubB subbrachial nucleus 27-28, 30-32, 76-82,
144-151
SubC subcoeruleus nucleus 27, 29, 33, 88
SubCA subcoeruleus nucleus, alpha part 87, 157-158
SubCD subcoeruleus nucleus, dorsal part 26, 28, 85,
87, 154-158
SubCV subcoeruleus nucleus, ventral part 28, 85,
155-156
SubG subgeniculate nucleus 20-21, 29, 70-72,
134-141
SubI subincertal nucleus 69-70, 134
SubP subpostrema area 168-170, 172-173
SubV submedius thalamic nucleus, ventral part
3, 23-25, 28
SubVCx subventricular layer of developing cortex
4-9, 11-22, 26-27
SuG superficial gray layer of the superior colliculus
76-81, 143-160
SuM supramammillary nucleus 23-25
SuML supramammillary nucleus, lateral part 24, 26,
74-76, 140-145
SuMM supramammillary nucleus, medial part
74-76, 140-145
sumx supramammillary decussation 25-26, 74,
142-143
SupM superior meatus 44
SuS superior salivatory nucleus 88-89, 158-159
SuspLig suspensory ligament 104-105
SuVe superior vestibular nucleus 29-36, 88-92,
159-161
TTe terete hypothalamic nucleus 70-73, 135-140
TeA temporal associatin cortex 72-82, 133-148
TempM temporalis muscle 1, 6-14, 16-17, 44-47,
49-50, 54-61, 63-67
TempP temporal bone, petrosal part 22-23, 25-26,
28-36, 78-79, 81-82, 84, 87, 89, 92, 100, 151-152,
154, 163, 167
TempS temporal bone, squamous part 13-21, 66-73
tfp transverse fibers of the pons 24, 26, 28-29, 77-81,
147-152
TG tectal gray 27-28, 73-76, 142-145
Thy thyroid gland 17, 21
TMJ temporomandibular joint 16-18, 67, 69-73
Tongue tongue 1-14
TPal tensor palati muscle 14-15, 71-72, 74-75
TrLL triangular nucleus, lateral lemniscus 153-154
trs transverse sinus 30, 32-36, 75-81, 85-87, 91-93,
97
TS triangular septal nucleus 12, 60-62, 121-125
ts tectospinal tract 32, 83-84, 150-155, 161-176
TSne triangular septal nucleus, neuroepithelial zone
13
TT tensor tympani muscle 77-82
tth trigeminothalamic tract 148, 150-151
Tu olfactory tubercle 4-12, 50-52, 54-63, 111, 125
Tu1 olfactory tubercle, layer 1 112-124
TuLH tuberal region of lateral hypothalamus 67,
70-71, 130-132, 137-140
ty9 tympanic branch of the glossopharyngeal nerve
91-94
TyBu tympanic bulla 18-25, 82, 84-85, 87, 89-90
TyC tympanic cavity 18, 20-24, 79, 90
TyM tympanic membrane 18
Tz nucleus of the trapezoid body 22-23, 82-85,
153-157
tz trapezoid body 23, 28, 92, 153-162
TzM trapezius muscle 28-31, 33-37, 39-41
tzx decussation of the trapezoid body 22
UUtr utricle 26, 28, 84, 87, 89-90, 92-94
Vv vein 146
V1 primary visual cortex 71-82, 133-137, 141-142,
144, 148, 150-152
V1B primary visual cortex, binocular area 138-140,
143, 145-147
V1M primary visual cortex, monocular area
138-140, 143, 146-147
V2L secondary visual cortex, lateral area 71-82,
133-152
V2ML secondary visual cortex, mediolateral area
71-82, 132-147
V2MM secondary visual cortex, mediomedial area
71-82, 132-150
VA ventral anterior thalamic nucleus 65, 128-130
VC ventral cochlear nucleus 30-31
vc ventral column of the spinal cord 33-34
VCA ventral cochlear nucleus, anterior part 26-29,
86-91, 153-158
VCCap ventral cochlear nucleus, capsular part
160-162
VCl ventral part of claustrum 60-66, 68, 110-132
VCP ventral cochlear nucleus, posterior part 27,
91-94, 159-162, 164
VCPO ventral cochlear nucleus, posterior part,
octopus cell area 163
VDB nucleus of the vertical limb of the diagonal band
52-57, 114-118
VeCb vestibulocerebellar nucleus 31, 93, 161-164
VeGn vestibular nerve ganglion 25-26, 28, 83-87,
151-155, 157
VEn ventral endopiriform nucleus 65-70, 127-130,
132
Vent ventricular space of the eye 2-7, 42-46, 51-52,
54, 104-105, 108-110, 112-113
vert vertebral artery 33, 100-102, 172-174
vesp vestibulospinal tract 161
Vest vestibule of the inner ear 84-87
VG ventral geniculate nucleus 18-25, 69-74,
131-134, 136-141
VG1 ventral geniculate nucleus, layer 1 135
VH ventral horn of spinal cord 33-36
vhc ventral hippocampal commissure 62-63,
122-126
VIEnt ventral intermediate entorhinal cortex 81,
145-147
Vitr vitreous cavity (posterior chamber) of the eye
2-3, 6, 44, 52
VL ventrolateral thalamic nucleus 16-17, 65-67,
128-132
VLH ventrolateral hypothalamic nucleus 65-67,
127-130
VLi ventral linear nucleus of the thalamus 139-140
VLL ventral nucleus of the lat lemniscus 21-28,
78-83, 148-153
VLPAG ventrolateral periaqueductal gray 81-92,
150-151, 156-159
VLPO ventrolateral preoptic nucleus 59-64, 122-126
VM ventromedial thalamic nucleus 65-69, 129-136
VMH ventromedial hypothalamic nucleus 15-21,
73-74, 131-132, 137-138
VMHC ventromedial hypothalamic nucleus, central
part 70, 133-136
VMHDM ventromedial hypothalamic nucleus,
dorsomedial part 69-72, 133-136
VMHSh ventromedial nucleus of the hypothalamus
shell 68, 73, 131-136
VMHVL ventromedial hypothalamic nucleus,
ventrolateral part 69-72, 133-136
vmnf ventral median fissure 103
VMPO ventromedial preoptic nucleus 21, 58-64,
122-126
vn vomeronasal nerve 105
VO ventral orbital cortex 48-49, 105-109
VOLT vascular organ of the lamina terminalis 6-10,
58, 119-122
Vom vomer 1-5, 42-43
VP ventral pallidum 11-12, 52-64, 112-127
VPL ventral posterolateral thalamic nucleus 17-24,
66-67, 69-71, 130-138
VPM ventral posteromedial thalamic nucleus 18-25,
68-73, 131-141
VPPC ventral posterior nucleus of the thalamus,
parvicellular part 22-24, 69-71, 135-139
VRe ventral reuniens thalamic nucleus 64-65, 67,
125-134
VS ventral subiculum 75-77, 140-148
XXII Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang
ADMB Book #4 23/8/06 3:14 PM Page XXII
vsc ventral spinocerebellar tract 30-32, 84, 86-87,
152-176
VTA ventral tegmental area 30-32
VTAR ventral tegmental area, rostral part 27, 29,
74-76, 143-145
VTg ventral tegmental nucleus 33-34, 86-88,
154-157
vtgx ventral tegmental decussation 80, 146, 148
VTM ventral tuberomammillary nucleus 22, 75-76,
140-144
VTT ventral tenia tecta 48-49, 108, 110
VTT1 ventral tenia tecta, layer 1 109
XX nucleus X 32, 34-35, 92-96, 161-166
Xi xiphoid thalamic nucleus 64-68, 126-133
xscp decussation of the superior cerebellar peduncle
33, 81-83, 149-153
YY nucleus Y 93-94, 161-163
ZZ nucleus Z 96, 167
ZIC zona incerta, caudal part 74-75, 140-143
ZID zona incerta, dorsal part 18-25, 69-73, 134-140
ZIR zona incerta, rostral part 65-68, 72, 127-133
ZIV zona incerta, ventral part 18-25, 68-71, 73-74,
134-141
ZL zona limitans 58
Zo zona layer of the superior colliculus 76-81,
143-160
ZygA zygomatic arch 1-14, 45-47, 49-51, 54-61,
63-67
Atlas of the Developing Mouse Brain at E17.5, P0, and P6 Paxinos Halliday Watson Koutcherov Wang XXIII
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Figures
E17.5 Figures 1-42
P0 Figures 43-103
P6 Figures 104-176
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ADMB Book #4 23/8/06 2:14 PM Page XXVI
Figure 1E17.5 #10.24 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Oral
dpal
MxB
GlneOV
Gr
ON1n
EPl
Mi
IPl
CrP
MidM
NasC
NSpt
EthB
InfM Vom
NasC5mxiorb
TempM
ZygA
MasMpsa
EnO
EnOTongue
Man
Man
ialn
Mc
GeGl
MyHy
ADig
1n olfactory nerve5mx 5n, maxillary divisionADig anterior digastric muscleCrP cribriform plate ethmoiddpal descending palatine arteryEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneGeGl genioglossus muscleGl glomerular layer olf bulbGr gracile nuialn inferior alveolar nerveInfM inferior meatusiorb infraorbital arteryIPl IP layer olf bulbMan mandibleMasM masseter muscleMc Meckel’s cartilageMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumON olfactory nerve layerOral oral cavityOV olfactory ventriclepsa post sup alveolar arteryTempM temporalis muscleTongue tongueVom vomerZygA zygomatic arch
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ADMB Book #4 23/8/06 2:14 PM Page XXVIII
SOb
AOB
dlo
lo ne
OV Gl
MiGrO
IPl
EPl
ONFro
Eyelid
PSphW CrP
1nAOE
MidM NasC
NSpt
Vom
NasC
EthB
ne
Vent
Cornea
AntChLens
VitrOF
RGn
Pig
InPl5mx
iorb
MxB
dpal
Oral
EnO
ZygA
MasM
EnOTongue
Man
Figure 2E17.5 #20.48 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionAntCh anterior chamberAOB access olfactory bulbAOE ant olfactory nu, extCornea corneaCrP cribriform plate ethmoiddlo dorsal lat olfactory tractdpal descending palatine arteryEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneEyelid eyelidFro frontal boneGl glomerular layer olf bulbGrO granular cell layer olf bulbInPl inner plexiform layer iorb infraorbital arteryIPl IP layer olf bulbLens lenslo lateral olfactory tractMan mandibleMasM masseter muscleMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ON olfactory nerve layerOral oral cavityOV olfactory ventriclePig pigment layer of the eyePSphW presphenoid wingRGn ganglion cell layer SOb superior oblique muscleTongue tongueVent ventricular space eyeVitr vitreous cavity eyeVom vomerZygA zygomatic arch
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EthB
1CxCxP
SubV
Cxne
LV
neloPir
AO
Fro
Eyelid
PSphW CrP1n
SOb
Cornea
LensVitr
ne
Vent
SRec
PigneOF
InPl
RGnpsa
5mxMRec iorb
MidM
NSpt
Vom
NasC
NasC
MxB
dpalstv
ZygA
EnO
Oral
Tongue
lga
EnOMasM
Man
Mc
MyHy
GeGl
GeHyADig
Figure 3E17.5 #30.60 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex1n olfactory nerve5mx 5n, maxillary divisionADig anterior digastric muscleAO anterior olfactory nuCornea corneaCrP cribriform plate ethmoidCxne neuroepithelial zone cortexCxP cortical platedpal descending palatine arteryEnO enamel organEthB ethmoid boneEyelid eyelidFro frontal boneGeGl genioglossus muscleGeHy geniohyoid muscleInPl inner plexiform layer iorb infraorbital arteryLens lenslga lingual arterylo lateral olfactory tractLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMidM middle meatusMRec medial rectus muscleMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer Oral oral cavityPig pigment layer of the eyePir piriform cortexpsa post sup alveolar arteryPSphW presphenoid wingRGn ganglion cell layer SOb superior oblique muscleSRec superior rectus musclestv superficial temporal veinSubV submedius thal nu, ventral Tongue tongueVent ventricular space eyeVitr vitreous cavity eyeVom vomerZygA zygomatic arch
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Tu
1Cx
CxP
ICxSubVCx
Cxne
CPune
LV
ne
Acbneaca
Pir
loFro
Eyelid
PSphW
Spt
acer
1nCrP
NasC
NSpt
LPS
SOb
Cornea
Lens
OpD
OFneRGn
InPl PigSRec EthB
Vom
NasCSphPal
5mxophv
MRec
stv
ZygA
MasM
Man
EnO
EnO MxB
Oral
Tongue
Iris
Vent
AntCh
Figure 4E17.5 #40.72 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex1n olfactory nerve5mx 5n, maxillary divisionaca anterior commissure, antAcbne accumbens neuroepithelacer anterior cerebral artAntCh anterior chamberCornea corneaCPune caudate putamen, neuroepCrP cribriform plate ethmoidCxne neuroepithelial zone cortexCxP cortical plateEnO enamel organEthB ethmoid boneEyelid eyelidFro frontal boneICx intermed cortical layerInPl inner plexiform layer Iris irisLens lenslo lateral olfactory tractLPS levator palpebraeLV lateral ventricleMan mandibleMasM masseter muscleMRec medial rectus muscleMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer OpD optic discophv ophthalmic veinOral oral cavityPig pigment layer of the eyePir piriform cortexPSphW presphenoid wingRGn ganglion cell layer SOb superior oblique muscleSphPal sphenopalatine ganglionSpt septumSRec superior rectus musclestv superficial temporal veinSubVCx subventricular layer cortexTongue tongueTu olfactory tubercleVent ventricular space eyeVom vomerZygA zygomatic arch
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EthB
1CxCxPICx
SubVCx
Cxne
LV
SptneCPune
ec
acaBTelne
LS
MSazac
mcer
BTelacer
1n NasC
NSpt
Pirlo
Tu
Fro
PSphW
ophv
Pig
LPS
Eyelid
Cornea
Lens
AntCh
OF
OpD 2nSRec ophv
Vom
NasC
SphPal
Pal5mx
MRec
ophvVent
EnOMxB
OralZygA
MasM
EnOTongue
MasM
Man ialn
Mc
MyHyGeHy
HyGl lga
GeGl
Acb
ne
Figure 5E17.5 #50.84 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex1n olfactory nerve2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuacer anterior cerebral artAntCh anterior chamberazac azygous ant cerebral artBTel basal telencephalonBTelne basal telenceph, neuroepithCornea corneaCPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsuleEnO enamel organEthB ethmoid boneEyelid eyelidFro frontal boneGeGl genioglossus muscleGeHy geniohyoid muscleHyGl hyoglossus muscleialn inferior alveolar nerveICx intermed cortical layerLens lenslga lingual arterylo lateral olfactory tractLPS levator palpebraeLS lateral septal nuLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilagemcer middle cerebral arteryMRec medial rectus muscleMS medial septal nuMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer OpD optic discophv ophthalmic veinOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPSphW presphenoid wingSphPal sphenopalatine ganglionSptne septum neuroepitheliumSRec superior rectus muscleSubVCx subventricular layer cortexTongue tongueTu olfactory tubercleVent ventricular space eyeVom vomerZygA zygomatic arch
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OpD2n
Pig
ne
1Cx
CxPSubVCx
ICxCxne
LV
SptneCPune
ec
aca BTelne
LS
MS
Acb
Pirlo
rf
Fro
Tu
BTel
VOLT
acer
mcerPSphWophv
Vent
Eyelid SOb
Lens Vitr
OFRGn
InPl
stv
MRecSphPal
EthBophv
LPSSRec
5mx
NasC
NSpt
NasC
PalMxB
EnOdpal
Oral
ZygA
TempMCor
EnO
Tongue
lgaMyHyMcMan
MasM
masa
Iris
Cornea
Figure 6E17.5 #60.96 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuacer anterior cerebral artBTel basal telencephalonBTelne basal telenceph, neuroepithCor coronoid process mandibleCornea corneaCPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical platedpal descending palatine arteryec external capsuleEnO enamel organEthB ethmoid boneEyelid eyelidFro frontal boneICx intermed cortical layerInPl inner plexiform layer Iris irisLens lenslga lingual arterylo lateral olfactory tractLPS levator palpebraeLS lateral septal nuLV lateral ventricleMan mandiblemasa masseteric arteryMasM masseter muscleMc Meckel’s cartilagemcer middle cerebral arteryMRec medial rectus muscleMS medial septal nuMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer OpD optic discophv ophthalmic veinOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPSphW presphenoid wingrf rhinal fissureRGn ganglion cell layer SOb superior oblique muscleSphPal sphenopalatine ganglionSptne septum neuroepitheliumSRec superior rectus musclestv superficial temporal veinSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTu olfactory tubercleVent ventricular space eyeVitr vitreous cavity eyeVOLT vasc organ lam terZygA zygomatic arch
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EnO
5mx
IRec LRec
1Cx
CxPSubVCx
CxneICx
LV
Sptne
LS
MS
CPuneCPu
ec
Pir
aca
Tu
lo
rf
Fro
EyelidAcb
BTelne
BTelMPA
VOLTmcer acer
PSph
NSpt
EthBPSphW
LPSSRec
OF
InPl
RGn
Vent
ne
Pig
2nophv
MRec
NasC
Pal
MxB
SphPal
stv
TempMZygA
masa
MasM
Man
ialnMc
EnO
Oral
Tongue
lgaMyHy
Figure 7E17.5 #71.08 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuacer anterior cerebral artBTel basal telencephalonBTelne basal telenceph, neuroepithCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsuleEnO enamel organEthB ethmoid boneEyelid eyelidFro frontal boneialn inferior alveolar nerveICx intermed cortical layerInPl inner plexiform layer IRec inferior rectus musclelga lingual arterylo lateral olfactory tractLPS levator palpebraeLRec lat rectus muscleLS lateral septal nuLV lateral ventricleMan mandiblemasa masseteric arteryMasM masseter muscleMc Meckel’s cartilagemcer middle cerebral arteryMPA medial preoptic areaMRec medial rectus muscleMS medial septal nuMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ophv ophthalmic veinOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPSph presphenoid bonePSphW presphenoid wingrf rhinal fissureRGn ganglion cell layer SphPal sphenopalatine ganglionSptne septum neuroepitheliumSRec superior rectus musclestv superficial temporal veinSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTu olfactory tubercleVent ventricular space eyeVOLT vasc organ lam terZygA zygomatic arch
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ADMB Book #4 23/8/06 2:14 PM Page XL
BTel
Acb
1Cx
SubVCx
Cxne
InsCl ec
CPu
CPune
Sptne
LS
IG
MSaca
BTelne
loFro
Tu
Pir
PSphW
ictd
OptF
2n cav
VOLT
POHy
ne
3V
PSph
SRecPigneInPl
iopha
IRec
LRec
5mx
Pal
NasCSphPal
EnO
Cor
Man
TempMstv
ZygA
MasM ialn Mc
Oral
Tongue
HyGlMyHylga
GeGl
CxP
ICx
LV
Eye
Figure 8E17.5 #81.20 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex2n optic nerve3V 3rd ventricle5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuBTel basal telencephalonBTelne basal telenceph, neuroepithcav cavernous sinusCl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsuleEnO enamel organEye eyeFro frontal boneGeGl genioglossus muscleHyGl hyoglossus muscleialn inferior alveolar nerveictd internal carotid arteryICx intermed cortical layerIG indusium griseumInPl inner plexiform layer Ins insular cortexiopha inf ophthalmic arteryIRec inferior rectus musclelga lingual arterylo lateral olfactory tractLRec lat rectus muscleLS lateral septal nuLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMS medial septal nuMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumOptF optic foramenOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPOHy preoptic hypothalamusPSph presphenoid bonePSphW presphenoid wingSphPal sphenopalatine ganglionSptne septum neuroepitheliumSRec superior rectus musclestv superficial temporal veinSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTu olfactory tubercleVOLT vasc organ lam terZygA zygomatic arch
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BTelPOHy
3V
VOLT
MS
LV
LS
IGCPune
Cxne
SubVCx
1Cx
CxP
ICx
CPuSptne
Clec
Ins
PirloFro
aca
Tu
ictd
2n
PSphW
Pigne
PSph
NasC
PalMxB
5mx
4n6n
3n5oph cav
LRec
ictd
SphPal
opha
TempM
Corstv
ZygA
MasM
Man
ialnMc MyHy Tongue
Oral
HyGl lga
Eye
Figure 9E17.5 #91.30 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex2n optic nerve3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveaca anterior commissure, antBTel basal telencephaloncav cavernous sinusCl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsuleEye eyeFro frontal boneHyGl hyoglossus muscleialn inferior alveolar nerveictd internal carotid arteryICx intermed cortical layerIG indusium griseumIns insular cortexlga lingual arterylo lateral olfactory tractLRec lat rectus muscleLS lateral septal nuLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMS medial septal nuMxB maxillary boneMyHy mylohyoid muscleNasC nasal cavityne neuroepitheliumopha ophthalmic artOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPOHy preoptic hypothalamusPSph presphenoid bonePSphW presphenoid wingSphPal sphenopalatine ganglionSptne septum neuroepitheliumstv superficial temporal veinSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTu olfactory tubercleVOLT vasc organ lam terZygA zygomatic arch
ADMB Book #4 23/8/06 2:14 PM Page XLIII
ADMB Book #4 23/8/06 2:14 PM Page XLIV
3V
1Cx
CxP
ICxCxne
LV
IG
LS
MS
SHyST
BTelne
aca
CPune Sptne
CPuec
ClIns
PirloFro
BTelTu
POHy
VOLTneoch
ictd
PSphW
TempM
PSph
NasCPal
5oph
5mx
4n 3n cav6n
SphPal
ASph
LPtg
Cor
MasMstv
ZygA
masa Man
MasMMc
ialnOral
Tongue
lgaStyGl
HyGl
Figure 10E17.5 #101.44 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveaca anterior commissure, antASph alisphenoid boneBTel basal telencephalonBTelne basal telenceph, neuroepithcav cavernous sinusCl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsuleFro frontal boneHyGl hyoglossus muscleialn inferior alveolar nerveictd internal carotid arteryICx intermed cortical layerIG indusium griseumIns insular cortexlga lingual arterylo lateral olfactory tractLPtg lat pterygoid muscleLS lateral septal nuLV lateral ventricleMan mandiblemasa masseteric arteryMasM masseter muscleMc Meckel’s cartilageMS medial septal nuNasC nasal cavityne neuroepitheliumoch optic chiasmOral oral cavityPal palatine bonePir piriform cortexPOHy preoptic hypothalamusPSph presphenoid bonePSphW presphenoid wingSHy septohypothalamic nuSphPal sphenopalatine ganglionSptne septum neuroepitheliumST bed nu stria terminalisstv superficial temporal veinStyGl styloglossus muscleTempM temporalis muscleTongue tongueTu olfactory tubercleVOLT vasc organ lam terZygA zygomatic arch
ADMB Book #4 23/8/06 2:14 PM Page XLV
ADMB Book #4 23/8/06 2:15 PM Page XLVI
VPST
1Cx
CxP
ICx
SubVCx
Cxne LV
IGCPune
CPu
ec
ClIns
Fro Piracp BTelne
LS
fi
MnPO
LTer
ac
SHy
LPO
HDB
MCPOTu
lo
ictdPOHy
SChoch
PSphW
TempM ASph
LPtg
4n 3n6n
5oph
5mxcav
SphPal
Pal
MasMZygA
stv
masa
MasMMan
5man
McMPtg
Ptg
NasC
PSph
Oral
Tongue
MasM StyGllga
HyGl
3V
Figure 11E17.5 #111.56 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5man 5n, mandibular division5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveac anterior commissureacp anterior comm, posteriorASph alisphenoid boneBTelne basal telenceph, neuroepithcav cavernous sinusCl claustrumCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsulefi fimbria hippocampusFro frontal boneHDB nu horizlimb diagonal bandHyGl hyoglossus muscleictd internal carotid arteryICx intermed cortical layerIG indusium griseumIns insular cortexlga lingual arterylo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLS lateral septal nuLTer lemina terminalisLV lateral ventricleMan mandiblemasa masseteric arteryMasM masseter muscleMc Meckel’s cartilageMCPO magnocell preoptic nuMnPO median preoptic nuMPtg medial pterygoid muscleNasC nasal cavityoch optic chiasmOral oral cavityPal palatine bonePir piriform cortexPOHy preoptic hypothalamusPSph presphenoid bonePSphW presphenoid wingPtg pterygoid proces sphenoid SCh suprachiasmatic nuSHy septohypothalamic nuSphPal sphenopalatine ganglionST bed nu stria terminalisstv superficial temporal veinStyGl styloglossus muscleSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTu olfactory tubercleVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:15 PM Page XLVII
ADMB Book #4 23/8/06 2:15 PM Page XLVIII
MCPO
HDB
1CxCxP
ICx
SubVCx
Cxne LV
chp
fiIG
TS
IVF
CPune
BTelne
ic
CPuec
ClIns
PirFro acp
VPst fST
SHy
3V
Tu
loPSphW
ictd
LPO AHAMPO
LA
SChopt
ochsox
PSph6n3n4n
5oph5mx
Oral
ASph
TempM
LPtgZygA
MasM
Man
MasM Mc
5man
MPtg
ASph
Ptg
NasC
Oral
Tongue
lga
HyGl
StyGl
Figure 12E17.5 #121.68 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5man 5n, mandibular division5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveacp anterior comm, posteriorAHA anterior hypothal area, antASph alisphenoid boneBTelne basal telenceph, neuroepithchp choroid plexusCl claustrumCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsulef fornixfi fimbria hippocampusFro frontal boneHDB nu horizlimb diagonal bandHyGl hyoglossus muscleic internal capsuleictd internal carotid arteryICx intermed cortical layerIG indusium griseumIns insular cortexIVF interventricular foramenLA lateroanterior hypothal nulga lingual arterylo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMCPO magnocell preoptic nuMPO medial preoptic nuMPtg medial pterygoid muscleNasC nasal cavityoch optic chiasmopt optic tractOral oral cavityPir piriform cortexPSph presphenoid bonePSphW presphenoid wingPtg pterygoid proces sphenoid SCh suprachiasmatic nuSHy septohypothalamic nusox supraoptic decussationST bed nu stria terminalisst stria terminalisStyGl styloglossus muscleSubVCx subventricular layer cortexTempM temporalis muscleTongue tongueTS triangular septal nuTu olfactory tubercleVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:15 PM Page XLIX
ADMB Book #4 23/8/06 2:15 PM Page L
TempS
PLH
Amg
BTel
1Cx
CxP
Cxne LV
chp
fi
TSne
IVFCPune
CPuec
ClIns
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ST
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Fro
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cav
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ptgpal
4n 3n6n
5oph5mx
SphPalPSph
NasC
Tongue
ICx
SubVCx
sox
Oral
Figure 13E17.5 #131.80 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5man 5n, mandibular division5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveacp anterior comm, posteriorAHA anterior hypothal area, antAmg amygdalaASph alisphenoid boneATh anterior thalamic regionBTel basal telencephalonBTelne basal telenceph, neuroepithcav cavernous sinuschp choroid plexusCl claustrumCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateec external capsulef fornixfi fimbria hippocampusFro frontal boneGP globus pallidusHDB nu horizlimb diagonal bandic internal capsuleICx intermed cortical layerIns insular cortexIVF interventricular foramenLA lateroanterior hypothal nulo lateral olfactory tractLPtg lat pterygoid muscleLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMCPO magnocell preoptic nuMPtg medial pterygoid muscleNasC nasal cavityoch optic chiasmopt optic tractOral oral cavityPaAP paraventric hy, ant parvicellPir piriform cortexPLH peduncular part lat hyPSph presphenoid bonePSphW presphenoid wingPtg pterygoid proces sphenoid ptgpal pterygopalatine nSCh suprachiasmatic nuSFO subfornical organsox supraoptic decussationSphPal sphenopalatine ganglionST bed nu stria terminalisst stria terminalisStHy striohypothalamic nuSubVCx subventricular layer cortexTempM temporalis muscleTempS temporal bone, squamousTongue tongueTSne triang sept neuropithelialZygA zygomatic arch
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ADMB Book #4 23/8/06 2:15 PM Page LII
ictd
EA
1Cx
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chp
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PLH
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mxv
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Mc
MasM
Man
MPtgTPal
HPtg
Ptg NasC
ptgcn
BSph
Oral
Tongue
PalGl
HyGl
StyGl
Figure 14E17.5 #141.92 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5Gn trigeminal ganglion5man 5n, mandibular division6n root of abducens nerveAA anterior amyg areaACo ant cortical amygdaloid nuacp anterior comm, posteriorAD anterodorsal thalamic nuAH anterior hypothalamic areaAM anteromedial thalamic nuASph alisphenoid boneAV anteroventral thalamic nuBSph basisphenoid boneBTelne basal telenceph, neuroepithcav cavernous sinusCg cingulate cortexchp choroid plexusCl claustrumCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxA cortex-amyg transition Cxne neuroepithelial zone cortexCxP cortical plateEA sublenticular extend amygf fornixfi fimbria hippocampusFro frontal boneGP globus pallidusHi hippocampal regionHPtg hamulus pterygoid boneHyGl hyoglossus muscleic internal capsuleictd internal carotid arteryICx intermed cortical layerIns insular cortexIVF interventricular foramenLA lateroanterior hypothal nuLOT nu lateral olfactory tractLPtg lat pterygoid muscleLV lateral ventricleMan mandibleMasM masseter muscleMc Meckel’s cartilageMeA medial amyg nu, antMPtg medial pterygoid musclemxv maxillary veinNasC nasal cavityopt optic tractOral oral cavityPa paraventricular hypothal nuPalGl palatoglossus musclePir piriform cortexPLH peduncular part lat hyPSphW presphenoid wingPT paratenial thalamic nuPtg pterygoid proces sphenoid ptgcn nerve of the pterygoid canalPVA paraventricular thal nu, antRt reticular thal nuSCh suprachiasmatic nuSFO subfornical organSM nu stria medullarissm stria medullaris thalSO supraoptic nuSOR supraoptic, retrochiasmaticsox supraoptic decussationst stria terminalisStyGl styloglossus muscleSubVCx subventricular layer cortexTempM temporalis muscleTempS temporal bone, squamousTongue tongueTPal tensor palati muscleZygA zygomatic arch
ADMB Book #4 23/8/06 2:15 PM Page LIII
ADMB Book #4 23/8/06 2:15 PM Page LIV
ictd
SO
1Cx
CxPICx
SubVCxCxne chp
LV
Hi
fi chp
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Ins
GP
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6n5Gn/5n
TempS
TempS
ASph PSph
RCh
NasCPtg
HPtgTPal
Mc
LPtgCond
Figure 15E17.5 #152.04 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5Gn/5n trigem ganglion and nerve6n root of abducens nerveAA anterior amyg areaACo ant cortical amygdaloid nuAH anterior hypothalamic areaAM anteromedial thalamic nuASph alisphenoid boneB basal nu (Meynert)BTelne basal telenceph, neuroepithchp choroid plexusCl claustrumCond condylar process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepcst comm stria terminalisCxA cortex-amyg transition Cxne neuroepithelial zone cortexCxP cortical plateDR3V dorsal recess third ventricleEA sublenticular extend amygf fornixfi fimbria hippocampusGP globus pallidusHi hippocampal regionHPtg hamulus pterygoid boneic internal capsuleictd internal carotid arteryICx intermed cortical layerIns insular cortexLOT nu lateral olfactory tractLPtg lat pterygoid muscleLV lateral ventricleMc Meckel’s cartilageMeA medial amyg nu, antNasC nasal cavityopt optic tractPa paraventricular hypothal nuPaXi paraxiphoid nu of thalamusPir piriform cortexPLH peduncular part lat hyPrTh prethalamusPSph presphenoid bonePSphW presphenoid wingPT paratenial thalamic nuPtg pterygoid proces sphenoid PVA paraventricular thal nu, antRCh retrochiasmatic areaRe reuniens thalamic nuRt reticular thal nuSM nu stria medullarissm stria medullaris thalSO supraoptic nusox supraoptic decussationst stria terminalisSubVCx subventricular layer cortexTempS temporal bone, squamousTPal tensor palati muscleVMH ventmed hypothal nu
ADMB Book #4 23/8/06 2:15 PM Page LV
ADMB Book #4 23/8/06 2:15 PM Page LVI
BAOTACo
BMACxAParP
PSphWBL
I
1CxCxP
ICx
SubVCx
Cxne chp
LV
Hi
fi
sm
Hb
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BTelneLD
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RhRe
sticRtCPuIns
Cl
La
Ce
GP
B
EA
PrTh3V
PaMe
PLHSO
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VMHPLH
soxopt
ictd
MTuArc
TempM
TempSASph
5Gn
5man ASphPSph
NasCAud
Otic
Mc
LPtg
Cond
TMJ
StyGl
GeHy
Hyoid
Pir
Figure 16E17.5 #162.16 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5Gn trigeminal ganglion5man 5n, mandibular divisionACo ant cortical amygdaloid nuAH anterior hypothalamic areaArc arcuate hypothal nuASph alisphenoid boneAud auditory tubeB basal nu (Meynert)BAOT bed nu access olfactory trBL basolateral amyg nuBMA basomed amyg nu, antBTelne basal telenceph, neuroepithCe central amygdaloid nuchp choroid plexusCl claustrumCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxA cortex-amyg transition Cxne neuroepithelial zone cortexCxP cortical plateDR3V dorsal recess third ventricleEA sublenticular extend amygf fornixfi fimbria hippocampusGeHy geniohyoid muscleGP globus pallidusHb habenular nucleiHi hippocampal regionHyoid hyoid boneI intercalated nuclei amygic internal capsuleictd internal carotid arteryICx intermed cortical layerIns insular cortexLa lat amygdaloid nuLD laterodorsal thal nuLPtg lat pterygoid muscleLV lateral ventricleMc Meckel’s cartilageMD mediodorsal thalamic nuMe medial amygdaloid nuMTu medial tuberal nuNasC nasal cavityopt optic tractOtic otic ganglionPa paraventricular hypothal nuParP parietal platePir piriform cortexPLH peduncular part lat hyPrTh prethalamusPSph presphenoid bonePSphW presphenoid wingPVA paraventricular thal nu, antRe reuniens thalamic nuRh rhomboid thal nuRt reticular thal nusm stria medullaris thalSO supraoptic nusox supraoptic decussationst stria terminalisStyGl styloglossus muscleSubVCx subventricular layer cortexTempM temporalis muscleTempS temporal bone, squamousTMJ temporomandibular jointVL ventrolateral thalamic nuVMH ventmed hypothal nu
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ADMB Book #4 23/8/06 2:15 PM Page LVIII
ACo
BMA
BL
Ce
MeAV
1Cx
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ICx
SubVCx
Cxne
chpHi
LV
Hb
sm
fichp
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PVMDLP
VL CM
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ic
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f
PLH
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La
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ictd
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Arc
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5Gn
TempS
TempM Cond
TMJ
Otic
McASph
BSph
NasCAudC
LPal
GeHy
Oral
EpiG
Hyoid
Thy
Pir
Figure 17E17.5 #172.28 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5Gn trigeminal ganglionACo ant cortical amygdaloid nuAHP ant hypothal area, postAPit anterior lobe pituitaryArc arcuate hypothal nuASph alisphenoid boneAudC auditory tube cartilageBL basolateral amyg nuBMA basomed amyg nu, antBSph basisphenoid boneCe central amygdaloid nuchp choroid plexusCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateDEn dorsal endopiriform nuDM dorsomed hypothal nuDR3V dorsal recess third ventricleEpiG epiglottisf fornixfi fimbria hippocampusGeHy geniohyoid muscleGP globus pallidusHb habenular nucleiHi hippocampal regionHyoid hyoid boneI intercalated nuclei amygic internal capsuleictd internal carotid arteryICx intermed cortical layerLa lat amygdaloid nuLP lateral posterior thal nuLPal levator palati muscleLV lateral ventricleMc Meckel’s cartilageMD mediodorsal thalamic nuMe medial amygdaloid nuMeAV med amygd nu, anteroventmfb med forebrain bundleMTu medial tuberal nuNasC nasal cavityopt optic tractOral oral cavityOtic otic ganglionPa paraventricular hypothal nuParP parietal platePir piriform cortexPLH peduncular part lat hyPrTh prethalamusPV paraventricular thalamic nuRe reuniens thalamic nuRh rhomboid thal nuRt reticular thal nuRtSt reticluostrial nusm stria medullaris thalsox supraoptic decussationst stria terminalisSubVCx subventricular layer cortexTempM temporalis muscleTempS temporal bone, squamousThy thyroid glandTMJ temporomandibular jointVL ventrolateral thalamic nuVMH ventmed hypothal nuVPL ventral posterolat thal nu
ADMB Book #4 23/8/06 2:15 PM Page LIX
ADMB Book #4 23/8/06 2:15 PM Page LX
ACoPLCo
Me
BMA
BLA
BLV
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CeLa
1Cx
CxP ICx
SubVCx
Cxne
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chp
LV
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sm
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PLH
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Cond
Mc APit
Arc MEIMEE
PPitIPit
BOcc
TyBu
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LarPh
Hyoid
fi
ml
Figure 18E17.5 #182.40 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5Gn trigeminal ganglionACo ant cortical amygdaloid nuAPit anterior lobe pituitaryArc arcuate hypothal nuBLA basolat amyg nu, antBLV basolat amyg, ventralBMA basomed amyg nu, antBOcc basioccipital boneCe central amygdaloid nuchp choroid plexusCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateDEn dorsal endopiriform nuDG dentate gyrusDLG dorsal lat geniculate nuDM dorsomed hypothal nuDR3V dorsal recess third ventricleEAM sublent extended amyg, medEP entopeduncular nuf fornixfi fimbria hippocampusGP globus pallidusHb habenular nucleiHi hippocampal regionHyoid hyoid boneI intercalated nuclei amygic internal capsuleictd internal carotid arteryICx intermed cortical layerIGL intergeniculate leafIPit intermediate lobe pitLa lat amygdaloid nuLarPh laryngopharynxLP lateral posterior thal nuLV lateral ventricleMc Meckel’s cartilageMD mediodorsal thalamic nuMe medial amygdaloid nuMEE medial eminence, ext layerMEI medial eminence, internal layermfb med forebrain bundleml medial lemniscusMTu medial tuberal nuopt optic tractPa paraventricular hypothal nuPaPo paraventricular hy nu, postParP parietal platePaXi paraxiphoid nu of thalamusPir piriform cortexPLCo posterolat cortical amygPLH peduncular part lat hyPo post thal nuclear groupPPit posterior lobe pitPrTh prethalamusPtd parotid glandRe reuniens thalamic nuRt reticular thal nusm stria medullaris thalsox supraoptic decussationst stria terminalisSubVCx subventricular layer cortexTempS temporal bone, squamousTMJ temporomandibular jointTyBu tympanic bullaTyC tympanic cavityTyM tympanic membraneVG ventral geniculate nuVMH ventmed hypothal nuVPL ventral posterolat thal nuVPM vent posteromed thal nuZID zona incerta, dorsal ZIV zona incerta, ventral
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ADMB Book #4 23/8/06 2:15 PM Page LXII
CPuneCPu
1Cx
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7n
Mc
5Gn
4n 3n6n
s5
m5 IPit
APit
PPit
Rath
BOcc
ic
Figure 19E17.5 #19
2.52mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5Gn trigeminal ganglion6n root of abducens nerve7n facial nerveAPit anterior lobe pituitaryArc arcuate hypothal nuBL basolateral amyg nuBLV basolat amyg, ventralBM basomedial amyg nuBOcc basioccipital boneCD cochlear ductCe central amygdaloid nuchp choroid plexusCM central medial thal nuCPu caudate putamen (striatum)CPune caudate putamen, neuroepCxne neuroepithelial zone cortexCxP cortical plateDA dorsal hypothal areaDG dentate gyrusDLG dorsal lat geniculate nuDM dorsomed hypothal nuDR3V dorsal recess third ventricleEP entopeduncular nuf fornixfi fimbria hippocampusHb habenular nucleiHi hippocampal regionic internal capsuleictd internal carotid arteryICx intermed cortical layerIGL intergeniculate leafIPit intermediate lobe pitLa lat amygdaloid nuLP lateral posterior thal nuLV lateral ventriclem5 motor root trigeminal nerveMc Meckel’s cartilageMD mediodorsal thalamic nuMe medial amygdaloid numfb med forebrain bundleml medial lemniscusMTu medial tuberal nuopt optic tractParP parietal platePir piriform cortexPLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPPit posterior lobe pitPVP paraventricular thal nu, postRath Rathke’s pouchRt reticular thal nus5 sensory root trigem nsm stria medullaris thalsox supraoptic decussationst stria terminalisSTIA ST, intraamygdaloid divSubVCx subventricular layer cortexTempS temporal bone, squamousTyBu tympanic bullaVG ventral geniculate nuVMH ventmed hypothal nuVPL ventral posterolat thal nuVPM vent posteromed thal nuZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXIII
ADMB Book #4 23/8/06 2:15 PM Page LXIV
PLH
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TyBu
StyPh
StyGlictd LarPh
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StMClav
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ml
3V
Figure 20E17.5 #202.64 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5Gn trigeminal ganglion5n trigeminal nerve6n root of abducens nerve7n facial nerve8cn cochlear root 8th nerveAPit anterior lobe pituitaryArc arcuate hypothal nuAry arytenoid cartilageBL basolateral amyg nuBM basomedial amyg nuBOcc basioccipital boneBTelne basal telenceph, neuroepithCD cochlear ductCe central amygdaloid nuCGn cochlear (spiral) ganglionchp choroid plexusClav clavicleCM central medial thal nuCorti organ of CortiCPu caudate putamen (striatum)Cxne neuroepithelial zone cortexCxP cortical plateDG dentate gyrusDLG dorsal lat geniculate nuDM dorsomed hypothal nuDR3V dorsal recess third ventricleEAM sublent extended amyg, medf fornixfi fimbria hippocampusfr fasciculus retroflexusHb habenular nucleiHi hippocampal regionHMall handle of malleusHyoid hyoid boneic internal capsuleictd internal carotid arteryICx intermed cortical layerIGL intergeniculate leafLa lat amygdaloid nuLar larynxLarPh laryngopharynxLgCa longus capitis muscleLP lateral posterior thal nuLV lateral ventricleMall malleusMD mediodorsal thalamic nuMe medial amygdaloid numfb med forebrain bundleml medial lemniscusMTu medial tuberal nuopt optic tractParP parietal platepcer post cerebral artPDig post belly digastricPeF perifornical nuPir piriform cortexPLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPrTh prethalamusPVP paraventricular thal nu, postrf rhinal fissureRRe retrouniens areaSalPh salpingopharyngeus musclesm stria medullaris thalSTIA ST, intraamygdaloid divStM sternomastoid muscleStyGl styloglossus muscleStyHy stylohyoid muscleStyPh stylopharyngeus muscleSubG subgeniculate nuSubVCx subventricular layer cortexTempS temporal bone, squamousTyBu tympanic bullaTyC tympanic cavityVG ventral geniculate nuVMH ventmed hypothal nuVPL ventral posterolat thal nuVPM vent posteromed thal nuZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXV
ADMB Book #4 23/8/06 2:15 PM Page LXVI
ParP
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Ary
Thy
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ml
sl
Figure 21E17.5 #212.76 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle5Gn trigeminal ganglion5n trigeminal nerve7n facial nerve8cn cochlear root 8th nerveAmg amygdalaArc arcuate hypothal nuAry arytenoid cartilagebas basilar arteryBOcc basioccipital boneBTelne basal telenceph, neuroepithCD cochlear ductCGn cochlear (spiral) ganglionchp choroid plexusCx1 developing Cx, layer 1Cxne neuroepithelial zone cortexCxP cortical plateDLG dorsal lat geniculate nuDM dorsomed hypothal nuEAM sublent extended amyg, medf fornixfi fimbria hippocampusfr fasciculus retroflexusHb habenular nucleiHi hippocampal regionHMall handle of malleusic internal capsuleictd internal carotid arteryICx intermed cortical layerIGL intergeniculate leafijugv internal jugular veinLarPh laryngopharynxLgCa longus capitis muscleLP lateral posterior thal nuLV lateral ventricleMall malleusMD mediodorsal thalamic numfb med forebrain bundleml medial lemniscusMTu medial tuberal nuopt optic tractParP parietal platePDig post belly digastricPeF perifornical nuPir piriform cortexPLH peduncular part lat hyPo post thal nuclear groupPrTh prethalamusPV paraventricular thalamic nuRRe retrouniens areaS subiculumSalPh salpingopharyngeus musclescp superior Cb pedunclesl sulcus limitansSTh subthalamic nuStM sternomastoid muscleStyGl styloglossus muscleStyHy stylohyoid muscleStyPh stylopharyngeus muscleSubG subgeniculate nuSubVCx subventricular layer cortexTempS temporal bone, squamousThy thyroid glandTyBu tympanic bullaTyC tympanic cavityVG ventral geniculate nuVLL ventral nu lat lemniscusVMH ventmed hypothal nuVMPO ventmed preoptic nuVPL ventral posterolat thal nuVPM vent posteromed thal nuZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXVII
ADMB Book #4 23/8/06 2:15 PM Page LXVIII
VTM
BTelne
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LV
rf
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1Cx
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Hi
3V
Figure 22E17.5 #22
2.88mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5Gn trigeminal ganglion5n trigeminal nerve7n facial nerve8cn cochlear root 8th nerveArc arcuate hypothal nubas basilar arteryBOcc basioccipital bonebsc brachium superior colliculusBTelne basal telenceph, neuroepithCAT nu central acoustic trCD cochlear ductCGn cochlear (spiral) ganglionchp choroid plexusCM central medial thal nuCxne neuroepithelial zone cortexCxP cortical plateDLG dorsal lat geniculate nuEAM sublent extended amyg, medEntne entorh cx neuroepithelialf fornixfi fimbria hippocampusfr fasciculus retroflexusHi hippocampal regionHMall handle of malleusic internal capsuleICx intermed cortical layerIGL intergeniculate leafInc incusLgCa longus capitis muscleLHb lateral habenular nuLP lateral posterior thal nuLReCa lat rectus capitis muscleLV lateral ventricleMB mammillary bodyMD mediodorsal thalamic nuME median eminencemfb med forebrain bundleMHb med habenular numl medial lemniscusMVPO medioventral periolivary nuParP parietal platePF parafascicular thal nuPH posterior hypothal nuPLH peduncular part lat hyPo post thal nuclear groupPR prerubral fieldPSTh parasubthalamic nuRc Reichert’s cartilagerf rhinal fissureRPa raphe pallidus nuRRe retrouniens areaRSD retrosplenial dysgranular cxRSG retrosplenial granular cxS subiculumSPF subparafascicular thal nuSTh subthalamic nuSubVCx subventricular layer cortexTempP temporal bone, petrousTyBu tympanic bullaTyC tympanic cavityTz nu trapezoid bodytzx decuss trapezoid bodyVG ventral geniculate nuVLL ventral nu lat lemniscusVPL ventral posterolat thal nuVPM vent posteromed thal nuVPPC vent post nu th, parvicellular VTM vent tuberomammillary nuZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXIX
ADMB Book #4 23/8/06 2:15 PM Page LXX
Ent
Entne
Hi
Cxne
SubVICx
1CxCxP
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Figure 23E17.5 #233.00 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5n trigeminal nerve7N facial nu7n facial nerve8cn cochlear root 8th nerveBOcc basioccipital boneBStap base of stapesCD cochlear ductCGn cochlear (spiral) ganglionCM central medial thal nuCxne neuroepithelial zone cortexCxP cortical plateDLG dorsal lat geniculate nuEAM sublent extended amyg, medEnt entorhinal cortexEntne entorh cx neuroepithelialfr fasciculus retroflexusHi hippocampal regionictd internal carotid arteryICx intermed cortical layerIGL intergeniculate leafijugv internal jugular veinInc incusIntA interposed cerebellar nu, antLgCa longus capitis muscleLM lateral mammillary nuLP lateral posterior thal nuLPGi lat paragigantocellular nuLReCa lat rectus capitis muscleLV lateral ventricleMall malleusmfb med forebrain bundleML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialmt mammillothalamic tractOPT olivary pretectal nuOT nu of the optic tractOvalW oval windowP7 perifacial zoneParP parietal platePC paracentral thal nuPF parafascicular thal nuPH posterior hypothal nuPLH peduncular part lat hyPo post thal nuclear groupPR prerubral fieldPr5 principal sensory trigem nuPrC precommissural nuRc Reichert’s cartilageRIP raphe interpositus nuRPa raphe pallidus nuRRe retrouniens areaRSD retrosplenial dysgranular cxRSG retrosplenial granular cxSacc sacculesl sulcus limitansSOl superior olive, lateralSp5O spinal trigeml nu, oralSTh subthalamic nuStHy striohypothalamic nuStM sternomastoid muscleSubV submedius thal nu, ventral SuM supramammillary nuTempP temporal bone, petrousTyBu tympanic bullaTyC tympanic cavityTz nu trapezoid bodytz trapezoid bodyVG ventral geniculate nuVLL ventral nu lat lemniscusVPL ventral posterolat thal nuVPM vent posteromed thal nuVPPC vent post nu th, parvicellular ZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXXI
ADMB Book #4 23/8/06 2:15 PM Page LXXII
VLL
RSD
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Cxne
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Figure 24E17.5 #24
3.12mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle5TT motor trigem, tensor tymp7N facial nu7n facial nerve8cn cochlear root 8th nerveA5 A5 noradrenaline cellsAPT anterior pretectal nuArc arcuate hypothal nubas basilar arteryBStap base of stapesCD cochlear ductCGn cochlear (spiral) ganglionCM central medial thal nucp cerebral peduncleCxne neuroepithelial zone cortexCxP cortical plateDG dentate gyrusDLG dorsal lat geniculate nuEAM sublent extended amyg, medEnt entorhinal cortexEntne entorh cx neuroepithelialfr fasciculus retroflexusGi gigantocellular reticular nuGiA gigantocellular retic, alphaHStap handle of stapesICx intermed cortical layerIGL intergeniculate leafIntA interposed cerebellar nu, antlfp longitudinal fasciculus ponsLgCa longus capitis muscleLM lateral mammillary nuLP lateral posterior thal nuLPGi lat paragigantocellular nuLReCa lat rectus capitis muscleLV lateral ventriclemfb med forebrain bundleML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialmp mammillary peduncleMPT medial pretectal numtg mammillotegmental tractOmHy omohyoid muscleOPT olivary pretectal nuopt optic tractpc posterior commpcer post cerebral artPF parafascicular thal nuPH posterior hypothal nuPi pineal glandPLH peduncular part lat hypm principal mammillary trPn pontine nucleiPnC pontine reticular nu, caudalPnO pontine reticular nu, oral Po post thal nuclear groupPR prerubral fieldPr5 principal sensory trigem nuPrC precommissural nuRc Reichert’s cartilageRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nuRRe retrouniens arears rubrospinal tractRSD retrosplenial dysgranular cxRSG retrosplenial granular cxS subiculumSacc sacculeScap scapulaSp5O spinal trigeml nu, oralStapM stapedius muscleSTh subthalamic nuStM sternomastoid muscleSubV submedius thal nu, ventral SuM supramammillary nuSuML supramammillary nu, lat tfp transverse fibers ponsTyBu tympanic bullaTyC tympanic cavityVG ventral geniculate nuVLL ventral nu lat lemniscusVPL ventral posterolat thal nuVPM vent posteromed thal nuVPPC vent post nu th, parvicellular ZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXXIII
ADMB Book #4 23/8/06 2:15 PM Page LXXIV
pcer
ICxCxP
ICx
SubV
Cxne
PrS
PaS
Entne
LV
Ent
cpPSTh
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mtgPHA
PLH
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7n
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CD
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BOcc
Atlas
baspyml RPa
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7Lrs
Sp5O
Figure 25E17.5 #253.24 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle5TT motor trigem, tensor tymp7DI facial nu, dors intermedial7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve8vn vestibular root of 8th nerve10Gn vagus nerve ganglionA11 A11 dopamine cellsAPT anterior pretectal nuArc arcuate hypothal nuAtlas atlasbas basilar arteryBOcc basioccipital boneBStap base of stapesCD cochlear ductcp cerebral peduncleCxne neuroepithelial zone cortexCxP cortical plateEAM sublent extended amyg, medEnt entorhinal cortexEntne entorh cx neuroepithelialEth ethmoid thalamic nuF nu fields of Forelfr fasciculus retroflexusGem gemini hypothalamic nuGi gigantocellular reticular nuGiA gigantocellular retic, alphaICx intermed cortical layerlfp longitudinal fasciculus ponsLP lateral posterior thal nuLPGi lat paragigantocellular nuLReCa lat rectus capitis muscleLV lateral ventriclem5 motor root trigeminal nervemcp middle cerebellar pedunclemfb med forebrain bundleMG med geniculate nuML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialmp mammillary peduncleMPT medial pretectal nuMRe mammillary recess 3Vmtg mammillotegmental tractOPT olivary pretectal nuOT nu of the optic tractOvalW oval windowP7 perifacial zonePaS parasubiculumpcer post cerebral artPF parafascicular thal nuPHA posterior hypothal areaPLH peduncular part lat hyPn pontine nucleiPnC pontine reticular nu, caudalPnO pontine reticular nu, oral Po post thal nuclear groupPPT posterior pretectal nuPR prerubral fieldPr5 principal sensory trigem nuPrS presubiculumPrTh prethalamusPSTh parasubthalamic nupy pyramidal trREth retroethmoid nuRI rostral interstitial nu of mlfRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractRSD retrosplenial dysgranular cxRSG retrosplenial granular cxRtTg reticulotegmental nu ponsSacc sacculeSp5O spinal trigeml nu, oralStapM stapedius muscleSubV submedius thal nu, ventral SuM supramammillary nusumx supramammillary decussTempP temporal bone, petrousTyBu tympanic bullaVeGn vestibular n ganglionVG ventral geniculate nuVLL ventral nu lat lemniscusVPM vent posteromed thal nuZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #4 23/8/06 2:15 PM Page LXXV
ADMB Book #4 23/8/06 2:15 PM Page LXXVI
Ent
Entne
LV
1CxCxP
ICx
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pc
Com
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Atlas
bas
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7N
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Figure 26E17.5 #263.36 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex3V 3rd ventricle4V 4th ventricle5N motor trigeminal nu5TT motor trigem, tensor tymp7N facial nu7n facial nerveA7 A7 noradrenaline cellsAPT anterior pretectal nuAq aqueductArc arcuate hypothal nuASCC anterior semicirc canalAtlas atlasbas basilar arteryBOcc basioccipital bonebsc brachium superior colliculusCom commissural nu inf colliculuscp cerebral peduncleCxne neuroepithelial zone cortexCxP cortical plateDk nu of DarkschewitschEAM sublent extended amyg, medEnt entorhinal cortexEntne entorh cx neuroepithelialfr fasciculus retroflexusGi gigantocellular reticular nuGiA gigantocellular retic, alphaHSCCA horizontal SCCICx intermed cortical layerIRt intermed reticular nuLP lateral posterior thal nuLPGi lat paragigantocellular nuLReCa lat rectus capitis muscleLth lithoid nuLV lateral ventricleMCPC magnocell nu post commMG med geniculate nuML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMnR median raphe numtg mammillotegmental tractne neuroepitheliumOPT olivary pretectal nuOT nu of the optic tractP7 perifacial zonep1PAG p1 periaqueductal grayParP parietal platepc posterior commpcer post cerebral artPCRt parvicell reticular nuPCRtA parvicell reticular nu, alphaPHA posterior hypothal areaPi pineal glandPIL post intralaminar thal nuPLH peduncular part lat hyPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oralPo posterior thalamic nu PoT posterior thal nu, triangularPPT posterior pretectal nuPr5 principal sensory trigem nuPrTh prethalamusRI rostral interstitial nu of mlfRMg raphe magnus nuRPa raphe pallidus nuRPC red nu, parvicell partRPF retroparafascicular nuRSD retrosplenial dysgranular cxRSG retrosplenial granular cxSacc sacculeSN substantia nigraSp5O spinal trigeml nu, oralStapM stapedius muscleStM sternomastoid muscleSubCD subcoeruleus nu, dorsal SubVCx subventricular layer cortexSuML supramammillary nu, lat sumx supramammillary decussTempP temporal bone, petroustfp transverse fibers ponsUtr utricleVCA ventral cochlear nu, ant VeGn vestibular n ganglionVLL ventral nu lat lemniscus
ADMB Book #4 23/8/06 2:15 PM Page LXXVII
ADMB Book #4 23/8/06 2:16 PM Page LXXVIII
IPF
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Figure 27E17.5 #273.48 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex4V 4th ventricle5N motor trigeminal nu5TT motor trigem, tensor tymp6N abducens nu7N facial nu7SH facial motor nu, stylohyoidA7 A7 noradrenaline cellsAPT anterior pretectal nuAq aqueductcp cerebral pedunclecsc comm superior colliculusCxne neuroepithelial zone cortexCxP cortical plateDk nu of DarkschewitschDMTg dorsomed tegmental areaEnt entorhinal cortexEntne entorh cx neuroepithelialEVe nu origin efferents ve nfr fasciculus retroflexusg7 genu facial nerveGi gigantocell retic nuGiA gigantocellular retic, alphaICx intermed cortical layerInc incusIP interpedunc nuIPF interpedunc fossaIRt intermed reticular null lateral lemniscusLP lateral posterior thal nuLPGi lat paragigantocellular num5 motor root trigeminal nerveMG med geniculate numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe numtg mammillotegmental tractOPT olivary pretectal nuOT nu of the optic tractp1PAG p1 periaqueductal grayParP parietal platePBP parabrachial pigmented nuPCom nu posterior commPCRt parvicell reticular nuPCRtA parvicell reticular nu, alphaPi pineal glandPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Po post thal nuclear groupPrEW pre-Edinger-Westphal nuPrS presubiculumRLi rostral linear nu rapheRMg raphe magnus nuRPa raphe pallidus nuRPC red nu, parvicell partSC superior colliculusSN substantia nigrasp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSubB subbrachial nuSubC subcoeruleus nuSubVCx subventricular layer cortexTG tectal grayVCA ventral cochlear nu, ant VCP vent cochlear nu, posterior VLL ventral nu lat lemniscusVTAR vent tegmental area, rostr
ADMB Book #4 23/8/06 2:16 PM Page LXXIX
ADMB Book #4 23/8/06 2:16 PM Page LXXX
Aq
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Figure 28E17.5 #283.60 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex4V 4th ventricle5N trigeminal motor nu5TT motor trigem, tensor tymp6N abducens nu7N facial nu7SH facial motor nu, stylohyoid9/10/11n 9n, 10n, and 11n12n root of hypoglossal nerveA7 A7 noradrenaline cellsAPT anterior pretectal nuASCC anterior semicirc canalAtlas atlasAxis axis (C2 vertebra)bas basilar arteryBOcc basioccipital bonebsc brachium superior colliculusCGA central gray, alpha partCGO central gray, nu Ocp cerebral peduncleCxP cortical plateDk nu of DarkschewitschDMTg dorsomed tegmental areaELS endolymphatic sacemv emissary veinEVe nu origin efferents ve nfr fasciculus retroflexusg7 genu facial nerveGi gigantocellular reticular nuGiA gigantocellular retic, alphaHSCC horizontal semicircular canalHSCCA horizontal SCCI9Gn inferior ganglion 9nICx intermed cortical layerIF interfascicular nuijugv internal jugular veinInC interstitial nu of CajalIRt intermed reticular nuLgsCa longissimus capitis muscleLP lateral posterior thal nuLPGi lat paragigantocellular nuMA3 med access oculomotor nuMG med geniculate numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMst mastoid processmtg mammillotegmental tractMVe medial vestibular nune neuroepitheliumOT nu of the optic tractp1PAG p1 periaqueductal grayParP parietal platePBP parabrachial pigmented nuPCRt parvicell reticular nuPCRtA parvicell reticular nu, alphaPIF parainterfascicular nu VTAPinna pinna of the earPMnR paramedian raphe nuPnO pontine reticular nu, oral Po post thal nuclear groupPr5 principal sensory trigem nupy pyramidal trRLi rostral linear nu rapheRMg raphe magnus nuRPa raphe pallidus nuRPC red nu, parvicell partRt reticular thal nuSC superior colliculusscp superior Cb peduncleSGe supragenual nuSN substantia nigrasp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSubB subbrachial nuSubCD subcoeruleus nu, dorsal SubCV subcoeruleus nu, ventral SubV submedius thal nu, ventral TempP temporal bone, petroustfp transverse fibers ponsTG tectal graytz trapezoid bodyTzM trapezius muscleUtr utricleVCA ventral cochlear nu, ant VeGn vestibular n ganglionVLL ventral nu lat lemniscus
ADMB Book #4 23/8/06 2:16 PM Page LXXXI
ADMB Book #4 23/8/06 2:16 PM Page LXXXII
Pr5
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Figure 29E17.5 #293.72 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cx layer 1 of developing cortex4V 4th ventricle5N motor trigeminal nu5Sol trigeminal-solitary trans6N abducens nu7N facial nu8n vestibulocochlear nerve9/10/11n 9n, 10n, and 11n12n root of hypoglossal nerveA7 A7 noradrenaline cellsAPT anterior pretectal nuAq aqueductASCC anterior semicirc canalAtlas atlasAxis axis (C2 vertebra)BOcc basioccipital boneCG central grayCGB central gray, beta partcp cerebral pedunclecsc comm superior colliculusCxne neuroepithelial zone cortexCxP cortical plateDk nu of DarkschewitschDMTg dorsomed tegmental areaELS endolymphatic sacemv emissary veinfr fasciculus retroflexusGi gigantocellular reticular nuGiV gigantocellular retic, ventHSCC horizontal semicircular canalicp inf cerebellar peduncleIF interfascicular nuijugv internal jugular veinILL intermed nu lat lemniscusInC interstitial nu of CajalIO inferior olivary nuIRt intermed reticular nuLgsCa longissimus capitis muscleLP lateral posterior thal nuLPGi lat paragigantocellular nuMA3 med access oculomotor numcp middle cerebellar peduncleMG med geniculate numlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial numRt mesenceph retic formmtg mammillotegmental tractMVe medial vestibular nune neuroepitheliumOcc occipital bonep1PAG p1 periaqueductal grayPBP parabrachial pigmented nuPCRt parvicell reticular nuPIF parainterfascicular nu VTAPMnR paramedian raphe nuPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPSCC post semicircular canalPSCCA post ampullapy pyramidal trRLi rostral linear nu rapheRPa raphe pallidus nuRPC red nu, parvicell partSC superior colliculusSGe supragenual nuSN substantia nigrasp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSpVe spinal vestibular nuSubC subcoeruleus nuSubG subgeniculate nuSuVe superior vestibular nuTempP temporal bone, petroustfp transverse fibers ponsTzM trapezius muscleVCA ventral cochlear nu, ant VTAR vent tegmental area, rostr
ADMB Book #4 23/8/06 2:16 PM Page LXXXIII
ADMB Book #4 23/8/06 2:16 PM Page LXXXIV
trs
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Figure 30E17.5 #303.84 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solit trans6N abducens nu9n glossopharyngeal nerve10n vagus nerve11n root of accessory nerve Alar alar ligament densAmb ambiguus nuAq aqueductasc7 ascending fibers facial nASCC anterior semicirc canalAtAx atlantoaxial jointAtlas atlasAtOc atlantooccipital jointAxis axis (C2 vertebra)Cb cerebellumCCrus common crus CG central graycp cerebral peduncleDAx dens of the axisDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trELS endolymphatic sacFMag foramen magnumfr fasciculus retroflexusGi gigantocellular reticular nuGiV gigantocellular retic, ventHSCC horizontal semicircular canalicp inf cerebellar peduncleIF interfascicular nuijugv internal jugular veinILL intermed nu lat lemniscusInC interstitial nu of CajalIO inferior olivary nuIPF interpedunc fossaIRt intermed reticular nuIS inferior salivatory nuJugF jugular foramenKF Kˆlliker-Fuse nuLgsCa longissimus capitis muscleLP lateral posterior thal nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMA3 med access oculomotor numcp middle cerebellar peduncleMG med geniculate numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial numRt mesenceph retic formmtg mammillotegmental tractMVe medial vestibular nuOcc occipital boneoccs occipital sinusp1PAG p1 periaqueductal grayPaR pararubral nuParP parietal platePBP parabrachial pigmented nuPCRt parvicell reticular nuPinna pinna of the earPMnR paramedian raphe nuPnO pontine reticular nu, oral PSCC post semicircular canalpy pyramidal trR red nuRLi rostral linear nu rapheROb raphe obscurus nuRPa raphe pallidus nuSC superior colliculusSGe supragenual nuSN substantia nigraSObCa superior oblique Sol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuSu5 supratrigeminal nuSubB subbrachial nuSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusTzM trapezius muscleVC ventral cochlear nuvsc ventral spinocerebellar trVTA vent tegmental area
ADMB Book #4 23/8/06 2:16 PM Page LXXXV
ADMB Book #4 23/8/06 2:16 PM Page LXXXVI
ParB
SC Aq
mPAG
mRt
RMC
BICbic
SubB3N
RLimtg
VTAPBP
SN
cp ml
IPF
IPCIPL
fr
MPLILL PMnR
PnO
Su5vsc
KFMPB
CG
4V
sl
Pr
MVe
VeCb
scpmcpEGL
ASCC
TempP
PinnaCCrus
ELS
VC
LR4V
Cb SuVe
LVeicp
SpVe
Sol
sol
5Sol
PCRtSp5I
sp5IRt DPGi
Gi
mlf
RObHSCC
PSCCJugF
vsc
dsc/ocLPGi
FMagOcc
SObCa
TzM
LgsCa
CeAu
Atlas
AtOcAtlas
Alar
DAx
Axis
AtAxIObCa
pybas
IOMRPa
IOPr
IOD
Figure 31E17.5 #313.96 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu4V 4th ventricle5Sol trigeminal-solitary transAlar alar ligament densAq aqueductASCC anterior semicirc canalAtAx atlantoaxial jointAtlas atlasAtOc atlantooccipital jointAxis axis (C2 vertebra)bas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCb cerebellumCCrus common crus CeAu cervicoauricular muscleCG central graycp cerebral peduncleDAx dens of the axisDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trEGL external granular layer CbELS endolymphatic sacFMag foramen magnumfr fasciculus retroflexusGi gigantocellular reticular nuHSCC horizontal semicircular canalicp inf cerebellar peduncleILL intermed nu lat lemniscusIObCa inf oblique capitisIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIPC IPC nu, caudal IPF interpedunc fossaIPL interpedunc nu, lat subnuIRt intermed reticular nuJugF jugular foramenKF Kˆlliker-Fuse nuLgsCa longissimus capitis muscleLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular numcp middle cerebellar peduncleml medial lemniscusmlf med longitudinal fasciculusMPB medial parabrachial nuMPL medial paralemniscial numRt mesenceph retic formmtg mammillotegmental tractMVe medial vestibular nuOcc occipital bonePAG periaqueductal grayParB parietal bonePBP parabrachial pigmented nuPCRt parvicell reticular nuPinna pinna of the earPMnR paramedian raphe nuPnO pontine reticular nu, oral Pr prepositus nuPSCC post semicircular canalpy pyramidal trRLi rostral linear nu rapheRPa raphe pallidus nuRMC red nu, magnocell partROb raphe obscurus nuSC superior colliculusscp superior Cb pedunclesl sulcus limitansSN substantia nigraSObCa superior oblique Sol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuSu5 supratrigeminal nuSubB subbrachial nuSuVe superior vestibular nuTempP temporal bone, petrousTzM trapezius muscleVC ventral cochlear nuVeCb vestibulocerebellar nuvsc ventral spinocerebellar trVTA vent tegmental area
ADMB Book #4 23/8/06 2:16 PM Page LXXXVII
ADMB Book #4 23/8/06 2:16 PM Page LXXXVIII
PnO
SCmPAG
Aq
mRt
Su3C
3N3PC
Su3BIC
bic
SubB
SN
PaRR
mlf
RLi
IP
IP
PMnRts
VTA
RRFcp
PTgRR
DLL
MPB LDTgscp
LPB
KF
vsc
mcpEGL
trs
ASCC
SuVe
LC
CG
4VDC
SpVe MVe
LR4V
ELS
CCrus
TempP
PSCC occs
Sp5I
PCRt
Sol
sol
5Sol
X
icp
Pr
mlf
DPGiIRt
Gi RObAmb
LPGi
vsc
Occdsc/oc
IODIOM
RPa
IOPrbas
sp5
Figure 32E17.5 #324.08 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular4V 4th ventricle5Sol trigeminal-solit transAmb ambiguus nuAq aqueductASCC anterior semicirc canalbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCCrus common crus CG central graycp cerebral peduncleDC dorsal cochlear nuDLL dorsal nu lateral lemniscusDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trEGL external granular layer CbELS endolymphatic sacGi gigantocellular reticular nuicp inf cerebellar peduncleIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIP interpedunc nuIRt intermed reticular nuKF Kˆlliker-Fuse nuLC locus coeruleusLDTg laterodor tegmental nuLPB lateral parabrachial nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventriclemcp middle cerebellar pedunclemlf med longitudinal fasciculusMPB medial parabrachial numRt mesenceph retic formMVe medial vestibular nuOcc occipital boneoccs occipital sinusPAG periaqueductal grayPaR pararubral nuPCRt parvicell reticular nuPMnR paramedian raphe nuPnO pontine reticular nu, oral Pr prepositus nuPSCC post semicircular canalPTg pedunculopontine tegmentalR red nuRLi rostral linear nu rapheROb raphe obscurus nuRPa raphe pallidus nuRR retrorubral nuRRF retrorubral fieldSC superior colliculusscp superior Cb peduncleSN substantia nigraSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuSu3 supraoculomotor PAGSu3C supraoculomotor capSubB subbrachial nuSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusts tectospinal trvsc ventral spinocerebellar trVTA vent tegmental areaX nu X
ADMB Book #4 23/8/06 2:16 PM Page LXXXIX
ADMB Book #4 23/8/06 2:16 PM Page XC
Occ
SC
mPAG
IC
BIC
bic
PaR
Aq
MA3 Su33PC
3N
mlfCLi
RMC
scpRRF
SNcp
RR
DLLParB PTg
SPTg
xscp
ATg
VTg
LDTgSubC
LC Bar
scp
LPBE
mcpEGLtrs
Cb SuVe
ASCC
LR4Vchp
DC 4V
MVeSpVe
icp
CCrusELS
TempP
PSCC
occs
Sp5I
Sol Pr
DPGi
mlfPCRt
IRtAmb
Gi
LRt
pica
sp5
IOD
IOMIOPr
RPavert
Atlas
vert
SObCa
CeAu
TzM FatAxis vc
VH
CClc
LgsCa
asp
ROb
5Sol
Figure 33E17.5 #334.20 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular4V 4th ventricle5Sol trigeminal-solit transAmb ambiguus nuAq aqueductASCC anterior semicirc canalasp anterior spinal arteryATg anterior tegmental nuAtlas atlasAxis axis (C2 vertebra)Bar Barrington’s nuBIC nu brachium inf colliculusbic brachium inf colliculusCb cerebellumCC central canalCCrus common crus CeAu cervicoauricular musclechp choroid plexusCLi caudal linear nu raphecp cerebral peduncleDC dorsal cochlear nuDLL dorsal nu lateral lemniscusDPGi dors paragigantocellular nuEGL external granular layer CbELS endolymphatic sacFat loculated brown fatGi gigantocellular reticular nuIC inferior colliculusicp inf cerebellar peduncleIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nulc lateral coumn spinal cordLC locus coeruleusLDTg laterodor tegmental nuLgsCa longissimus capitis muscleLPBE lat parabrachial nu, externalLR4V lat recess 4th ventricleLRt lateral reticular nuMA3 med access oculomotor numcp middle cerebellar pedunclemlf med longitudinal fasciculusmPAG mesenc periaqueduc grayMVe medial vestibular nuOcc occipital boneoccs occipital sinusPaR pararubral nuParB parietal bonePCRt parvicell reticular nupica post inferior Cb artPr prepositus nuPSCC post semicircular canalPTg pedunculopontine tegmentalRMC red nu, magnocell partROb raphe obscurus nuRPa raphe pallidus nuRR retrorubral nuRRF retrorubral fieldSC superior colliculusscp superior Cb peduncleSN substantia nigraSObCa superior oblique Sol nu of solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSPTg subpeduncular tegmental nuSpVe spinal vestibular nuSu3 supraoculomotor PAGSubC subcoeruleus nuSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusTzM trapezius musclevc ventral column spinal cordvert vertebral artVH ventral horn spinal cordVTg vent tegmental nuxscp decussation sup cereb ped
ADMB Book #4 23/8/06 2:16 PM Page XCI
ADMB Book #4 23/8/06 2:16 PM Page XCII
ELS
SC
mPAG
Me5
ECICbic
BICPrCnF
Su3C Su33PC
3N
mlf CLi
Aq
PBG
MiTg
RRF/A8
DLLParB scp
PTg
LPB
mcpEGL
trsCb
SuVe
scp
MPBLDTg
BarDTg
PMnR
VTgLC
me5Me5
LR4Vchp
DCASCC
TempP CCrus
PSCC
icp8n SpVe
MVe
Solsol
Sp5Isp5occs
PCRt
5Sol
IRt
Pr
4V
sl
GiAmb
rs
LRt IODROb
mlf
IOMRPaAtlas
Occ
SObCa
TzMCeAu
SplCa
Fat
LgsCa
IObCa
Axis
vc
VH
Scap
Fat
lcCC
X
Figure 34E17.5 #344.32 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular4V 4th ventricle5Sol trigeminal-solitary trans8n vestibulocochlear nerveAmb ambiguus nuAq aqueductASCC anterior semicirc canalAtlas atlasAxis axis (C2 vertebra)Bar Barrington’s nuBIC nu brachium inf colliculusbic brachium inf colliculusCb cerebellumCC central canalCCrus common crus CeAu cervicoauricular musclechp choroid plexusCLi caudal linear nu rapheDC dorsal cochlear nuDLL dorsal nu lateral lemniscusDTg dorsal tegmental nuECIC external cx inferior collEGL external granular layer CbELS endolymphatic sacFat loculated brown fatGi gigantocellular reticular nuicp inf cerebellar peduncleIObCa inf oblique capitisIOD inf olive, dorsal nuIOM inf olive, med nuIRt intermed reticular nuLC locus coeruleuslc lateral coumn spinal cordLDTg laterodor tegmental nuLgsCa longissimus capitis muscleLPB lateral parabrachial nuLR4V lat recess 4th ventricleLRt lateral reticular numcp middle cerebellar peduncleMe5 mesencephalic trigem nume5 mesencephalic trigem tractMiTg microcell tegmental numlf med longitudinal fasciculusmPAG mesenc periaqueduc grayMPB medial parabrachial nuMVe medial vestibular nuOcc occipital boneoccs occipital sinusParB parietal bonePBG parabigeminal nuPCRt parvicell reticular nuPMnR paramedian raphe nuPr prepositus nuPrCnF precuneiform areaPSCC post semicircular canalPTg pedunculopontine tegmentalROb raphe obscurus nuRPa raphe pallidus nuRRF/A8 retrorubral/A8 dopaminers rubrospinal tractSC superior colliculusScap scapulascp superior Cb pedunclesl sulcus limitansSObCa superior oblique Sol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSplCa splenius capitis muscleSpVe spinal vestibular nuSu3 supraoculomotor PAGSu3C supraoculomotor capSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusTzM trapezius musclevc ventral column spinal cordVH ventral horn spinal cordVTg vent tegmental nuX nu X
ADMB Book #4 23/8/06 2:16 PM Page XCIII
ADMB Book #4 23/8/06 2:16 PM Page XCIV
chp
trs
SC
mPAG
Aq
ECIC
BIC
bic
CnF DR4N
Pa4MiTg
DLL mlf
DRmlf
LDTgMPB
LPB
mcpEGL
ParB
Bar
LCSuVe
scp
Lat 4V
DTg
chpLR4V
CCrus
TempPELS
icp
SpVe MVe4V
solSol
10N
Pr
In12N
PCRt
5Sol
Sp5Ioccs
IRt
Gi Ro RObOcc Amb
LRt IODMdVIOM
RPapica
Atlas
RCPMj
LgsCa
SplCa
CeAuTzM
Fat
DRGn
pyx
VH
11N
Axis lcCC
X
sp5
Me5
Figure 35E17.5 #354.44 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu4V 4th ventricle5Sol trigeminal-solitary trans10N dorsal motor nu of vagus11N accessory nerve nu12N hypoglossal nuAmb ambiguus nuAq aqueductAtlas atlasAxis axis (C2 vertebra)Bar Barrington’s nuBIC nu brachium inf colliculusbic brachium inf colliculusCC central canalCCrus common crus CeAu cervicoauricular musclechp choroid plexusCnF cuneiform nuDLL dorsal nu lateral lemniscusDR dorsal raphe nuDRGn dorsal root ganglionDTg dorsal tegmental nuECIC external cx inferior collEGL external granular layer CbELS endolymphatic sacFat loculated brown fatGi gigantocellular reticular nuicp inf cerebellar peduncleIn intercalated nu medullaIOD inf olive, dorsal nuIOM inf olive, med nuIRt intermed reticular nuLat lateral (dentate) Cb nuLC locus coeruleuslc lateral coumn spinal cordLDTg laterodor tegmental nuLgsCa longissimus capitis muscleLPB lateral parabrachial nuLR4V lat recess 4th ventricleLRt lateral reticular numcp middle cerebellar peduncleMdV medullary reticular nu, ventMe5 mesencephalic trigem nuMiTg microcell tegmental numlf med longitudinal fasciculusmPAG mesenc periaqueduc grayMPB medial parabrachial nuMVe medial vestibular nuOcc occipital boneoccs occipital sinusPa4 paratrochlear nuParB parietal bonePCRt parvicell reticular nupica post inferior Cb artPr prepositus nupyx pyramidal decussationRCPMj rectus capitis major Ro nu of RollerROb raphe obscurus nuRPa raphe pallidus nuSC superior colliculusscp superior Cb peduncleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSplCa splenius capitis muscleSpVe spinal vestibular nuSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusTzM trapezius muscleVH ventral horn spinal cordX nu X
ADMB Book #4 23/8/06 2:16 PM Page XCV
ADMB Book #4 23/8/06 2:16 PM Page XCVI
LR4V
SC
Aq
mPAG
me5
ICbic
CnF
DLL Pa4
4NDR
mlf
PB
ParB
EGL
mcp scp
SuVeLatCb
trs
4V
chp
chp
MVeSpVe
Sol5Sol4V
10NPCRtSp5I
TempPoccs
12NIRt
Amb
Gi
V ROb
IOM
MdVLRt
Occ
RCPMj
11N
pyx
VH
AtlasLgsCa
SplCa
CeAu
TzM
Fat
RCPMj
Axis
lcCV2
CC
In
Figure 36E17.5 #364.56 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu4V 4th ventricle5Sol trigeminal-solitary trans10N dorsal motor nu of vagus11N accessory nerve nu12N hypoglossal nuAmb ambiguus nuAq aqueductAtlas atlasAxis axis (C2 vertebra)bic brachium inf colliculusCb cerebellumCC central canalCeAu cervicoauricular musclechp choroid plexusCnF cuneiform nuCV2 second cervical vertebraDLL dorsal nu lateral lemniscusDR dorsal raphe nuEGL external granular layer CbFat loculated brown fatGi gigantocellular reticular nuIC inferior colliculusIOM inf olive, med nuIRt intermed reticular nulc lateral coumn spinal cordIn intercalated nu medullaLat lateral cerebellar nuLgsCa longissimus capitis muscleLR4V lat recess 4th ventricleLRt lateral reticular numcp middle cerebellar peduncleMdV medullary reticular nu, ventme5 mesencephalic trigem tractmlf med longitudinal fasciculusmPAG mesenc periaqueduc grayMVe medial vestibular nuOcc occipital boneoccs occipital sinusPa4 paratrochlear nuPaR pararubral nuParB parietal bonePB parabrachial nucleusPCRt parvicell reticular nupyx pyramidal decussationRCPMj rectus capitis major ROb raphe obscurus nuSC superior colliculusscp superior Cb peduncleSol nu of solitary tractSp5I spinal trigem nu, interpolarSplCa splenius capitis muscleSpVe spinal vestibular nuSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusTzM trapezius muscleVH ventral horn spinal cord
ADMB Book #4 23/8/06 2:16 PM Page XCVII
ADMB Book #4 23/8/06 2:16 PM Page XCVIII
MdD
SC
IC
CnFAq
mPAG
DLL
mcp
EGLOcc
occs
LatIntA
scp
IntP 4V
chp
LR4Vchp
SpVeMVe
4VslSolsol
5Sol
Sp5C
sp5
BOccIn
12N
10N
12N
11N
DRGn
lcAtlas
LgsCa
SplCa
CeAu
TzM
Fat
RCPMj
Axis
Fat
DH
dcs
grcu
Scap
CC
Figure 37E17.5 #374.68 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans10N dorsal motor nu of vagus11N accessory nerve nu12N hypoglossal nuAq aqueductAtlas atlasAxis axis (C2 vertebra)BOcc basioccipital boneCC central canalCeAu cervicoauricular musclechp choroid plexusCnF cuneiform nucu cuneate fasciculusdcs dors corticospinal tractDH dorsal horn spinal cordDLL dorsal nu lateral lemniscusDRGn dorsal root ganglionEGL external granular layer CbFat loculated brown fatgr gracile fasciculusIC inferior colliculusIn intercalated nu medullaIntA interposed cerebellar nu, antIntP interposed cerebellar nu, postLat lateral (dentate) Cb nulc lateral coumn spinal cordLgsCa longissimus capitis muscleLR4V lat recess 4th ventriclemcp middle cerebellar peduncleMdD medullary reticular nu, dorsmPAG mesenc periaqueduc grayMVe medial vestibular nuOcc occipital boneoccs occipital sinusRCPMj rectus capitis major SC superior colliculusScap scapulascp superior Cb pedunclesl sulcus limitansSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSplCa splenius capitis muscleSpVe spinal vestibular nuTzM trapezius muscle
ADMB Book #4 23/8/06 2:16 PM Page XCIX
ADMB Book #4 23/8/06 2:16 PM Page C
occs
SC
AqIC
ParB
CnF
mPAG
cbx
IntAmcp
Lat
IntPCb
EGL
ParB
4VLR4V
SpVeMVe
4V
BOcc
Sp5CMdD
ECu
10Nsl
Sol5Sol sol
12N
sp5
RCPMj
SplCa
CeAu
Fat
LgsCa
Atlaslc
Axis
Fat
DH
CC
dcs
cu gr
In
Figure 38E17.5 #384.80 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solit trans10N dorsal motor nu of vagus12N hypoglossal nuAq aqueductAtlas atlasAxis axis (C2 vertebra)BOcc basioccipital boneCb cerebellumcbx cerebellar commissureCC central canalCeAu cervicoauricular muscleCnF cuneiform nucu cuneate fasciculusdcs dors corticospinal tractDH dorsal horn spinal cordECu external cuneate nuEGL external granular layer CbFat loculated brown fatgr gracile fasciculusIC inferior colliculusIn intercalated nu medullaIntA interposed cerebellar nu, antIntP interposed cerebellar nu, postLat lateral (dentate) Cb nulc lateral coumn spinal cordLgsCa longissimus capitis muscleLR4V lat recess 4th ventriclemcp middle cerebellar peduncleMdD medullary reticular nu, dorsmPAG mesenc periaqueduc grayMVe medial vestibular nuoccs occipital sinusParB parietal boneRCPMj rectus capitis major SC superior colliculussl sulcus limitansSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSplCa splenius capitis muscleSpVe spinal vestibular nu
ADMB Book #4 23/8/06 2:32 PM Page CI
ADMB Book #4 23/8/06 2:32 PM Page CII
Occ
SC
IC
Aq
IntAMed
LatCbEGL
4VSpVe
ECu
5Sol
Sol10N
AP
Sp5Csp5
RCPMj
Atlas
LgsCa
SplCa
TzM
Fat
lc
DHdcs
cu grAxisFat
Figure 39E17.5 #39
4.92mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans10N dorsal motor nu of vagusAP area postremaAq aqueductAtlas atlasAxis axis (C2 vertebra)Cb cerebellumcu cuneate fasciculusdcs dors corticospinal tractDH dorsal horn spinal cordECu external cuneate nuEGL external granular layer CbFat loculated brown fatgr gracile fasciculusIC inferior colliculusIntA interposed cerebellar nu, antLat lateral (dentate) Cb nulc lateral coumn spinal cordLgsCa longissimus capitis muscleMed medial cerebellar nuOcc occipital boneRCPMj rectus capitis major SC superior colliculusSol nu of solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSplCa splenius capitis muscleSpVe spinal vestibular nuTzM trapezius muscle
ADMB Book #4 23/8/06 2:32 PM Page CIII
ADMB Book #4 23/8/06 2:32 PM Page CIV
EGL
ECu
Cb
Aq
SC
IC
4V
Occ
Sp5C
5Sol
Solsol
APsp5
Atlas
LgsCa
TzM
SplCa
RCPMj
Fat
Axis
DHdcs
cu
gr
Figure 40E17.5 #405.04 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary transAP area postremaAq aqueductAtlas atlasAxis axis (C2 vertebra)Cb cerebellumcu cuneate fasciculusdcs dors corticospinal tractDH dorsal horn spinal cordECu external cuneate nuEGL external granular layer CbFat loculated brown fatgr gracile fasciculusIC inferior colliculusLgsCa longissimus capitis muscleOcc occipital boneRCPMj rectus capitis major SC superior colliculusSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSplCa splenius capitis muscleTzM trapezius muscle
ADMB Book #4 23/8/06 2:32 PM Page CV
ADMB Book #4 23/8/06 2:32 PM Page CVI
4V
Occ
ICAq
SC
ECu
Sol
Cu
solMdD
Sp5C
sp5
Atlas
LgsCa
SplCa
TzM
Fat
RCPMj
Axisgrcu
DH
dcs
Figure 41E17.5 #415.16 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricleAq aqueductAtlas atlasAxis axis (C2 vertebra)Cu cuneate nucu cuneate fasciculusdcs dors corticospinal tractDH dorsal horn spinal cordECu external cuneate nuFat loculated brown fatgr gracile fasciculusIC inferior colliculusLgsCa longissimus capitis muscleMdD medullary reticular nu, dorsOcc occipital boneRCPMj rectus capitis major SC superior colliculusSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSplCa splenius capitis muscleTzM trapezius muscle
ADMB Book #4 23/8/06 2:32 PM Page CVII
ADMB Book #4 23/8/06 2:32 PM Page CVIII
EthB
AOrb
CrP1n
ON
OV
neGrO
IPl
GlEPl
Mi Fro
Eyelid
Pig
Ventne
Vom
NSpt
NasC InfM
5mx
EnO
MxB
NasC
MasM
Eye
Figure 42P0 #1
0.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionAOrb alar orbital boneCrP cribriform plate ethmoidEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneEye eyeEyelid eyelidFro frontal boneGl glomerular layer olf bulbGrO granular cell layer olf bulbInfM inferior meatusIPl IP layer olf bulbMasM masseter muscleMi mitral cell layer olf bulbMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumON olfactory nerve layerOV olfactory ventriclePig pigment layer of the eyeVent ventricular space eyeVom vomer
ADMB Book #4 23/8/06 2:32 PM Page CIX
ADMB Book #4 23/8/06 2:32 PM Page CX
EthB
CrP
1n
ON
NasC
InfM
5mx
EnO
MxBdpal
Oral
Vom
MasM
HardG
OF
RGnne
PigInPl
NSpt
OV
ne AOrb
Fro
Gl EPlMi
IPl
GrO
MidMEye
Vent
Figure 43P0 #2
0.75 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionAOrb alar orbital boneCrP cribriform plate ethmoiddpal descending palatine arteryEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneEye eyeFro frontal boneGl glomerular layer olf bulbGrO granular cell layer olf bulbHardG Harderian glandInfM inferior meatusInPl inner plexiform layer IPl IP layer olf bulbMasM masseter muscleMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ON olfactory nerve layerOral oral cavityOV olfactory ventriclePig pigment layer of the eyeRGn ganglion cell layer Vent ventricular space eyeVom vomer
ADMB Book #4 23/8/06 2:32 PM Page CXI
ADMB Book #4 23/8/06 2:33 PM Page CXII
TempM
InfM
MidM
AOrb
OV
neIPl
1n
CrPPig
ne
Vent
dpal
SupM
Gl
EPl
Mi
RGn
OF
InPl
5mx
EthB
NSptHardG
NasC
Oral
MxBEnO
MasM
NasC
Cornea
Fro
Vitr
Figure 44P0 #3
0.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionAOrb alar orbital boneCornea corneaCrP cribriform plate ethmoiddpal descending palatine arteryEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneFro frontal boneGl glomerular layer olf bulbHardG Harderian glandInfM inferior meatusInPl inner plexiform layer IPl IP layer olf bulbMasM masseter muscleMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer Oral oral cavityOV olfactory ventriclePig pigment layer of the eyeRGn ganglion cell layer SupM superior meatusTempM temporalis muscleVent ventricular space eyeVitr vitreous cavity eye
ADMB Book #4 23/8/06 2:33 PM Page CXIII
ADMB Book #4 23/8/06 2:33 PM Page CXIV
Lens
Cornea
Iris
TempM
HardG
ZygA
InfM
NasCNSpt
NasC
MidM
CrP
OV
Mi
Gl
IPlEPl
AOB Fro
AOrb
MasM
MxB
Oral
RGn
ne
InPl
OF
Vent
5mx
Figure 45P0 #4
0.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionAOB access olfactory bulbAOrb alar orbital boneCornea corneaCrP cribriform plate ethmoidEPl ext plexiform layer olf bulbFro frontal boneGl glomerular layer olf bulbHardG Harderian glandInfM inferior meatusInPl inner plexiform layer IPl IP layer olf bulbIris irisLens lensMasM masseter muscleMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer Oral oral cavityOV olfactory ventricleRGn ganglion cell layer TempM temporalis muscleVent ventricular space eyeZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXV
ADMB Book #4 23/8/06 2:33 PM Page CXVI
EthCrP
MidM
NasC
NSpt
NasC
MxB
5mx HardG
ophvTempM ZygA
Cornea
SObAOrb
loAOB
neOV
EPlIPL
MiGl
EPl
ON
MasMOral
FroFrA
InPl
RGn
OF
Vent
ne
Figure 46P0 #5
1.11 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionAOB access olfactory bulbAOrb alar orbital boneCornea corneaCrP cribriform plate ethmoidEPl ext plexiform layer olf bulbEth ethmoid thalamic nuFrA frontal assocn cortexFro frontal boneGl glomerular layer olf bulbHardG Harderian glandInPl inner plexiform layer IPL interpedunc nu, lat subnulo lateral olfactory tractMasM masseter muscleMi mitral cell layer olf bulbMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ON olfactory nerve layerophv ophthalmic veinOral oral cavityOV olfactory ventricleRGn ganglion cell layer SOb superior oblique muscleTempM temporalis muscleVent ventricular space eyeZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXVII
ADMB Book #4 23/8/06 2:33 PM Page CXVIII
Lens
MidM
HardG5mx
NasC
NSpt
NasC
Iris
Cornea
TempM ZygA
AOV
ne
OVAOM
AOD
AOL
GrOAOE
loAOrb
FroFrA
EnO
MxB
Oral
MasM
Figure 47P0 #6
1.23 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionAOD ant olfactory nu, dorsAOE ant olfactory nu, extAOL ant olfactory nu, latAOM ant olfactory nu, medialAOrb alar orbital boneAOV ant olfactory nu, ventralCornea corneaEnO enamel organFrA frontal assocn cortexFro frontal boneGrO granular cell layer olf bulbHardG Harderian glandIris irisLens lenslo lateral olfactory tractMasM masseter muscleMidM middle meatusMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOral oral cavityOV olfactory ventricleTempM temporalis muscleZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXIX
ADMB Book #4 23/8/06 2:33 PM Page CXX
AOD
AOL
AOVP
VTT
neOV
MidM
NasC
NSpt5mx
PalNasC
lo
DLOLO
VOMO
PrL
M2
Fro
AOM
Oral
Eye
DTT
Figure 48P0 #7
1.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionAOD ant olfactory nu, dorsAOL ant olfactory nu, latAOM ant olfactory nu, medialAOVP ant olfactory, ventropostDLO dorsolat orbital cortexDTT dorsal tenia tectaEye eyeFro frontal boneLO lateral orbital cxlo lateral olfactory tractM2 secondary motor cxMidM middle meatusMO medial orbital cxNasC nasal cavityne neuroepitheliumNSpt nasal septumOral oral cavityOV olfactory ventriclePal palatine bonePrL prelimbic cxVO ventral orbital cxVTT ventral tenia tecta
ADMB Book #4 23/8/06 2:33 PM Page CXXI
ADMB Book #4 23/8/06 2:33 PM Page CXXII
MidM
CrP
NasC
NSpt
NasCPal
5mxHardG
MRec
LPS
SRec
AOrb
lo
AOP
Pir
AOL
AOD
AOMne
OV
AOVP aca
Fro
M1
M2Cg2
PrL
MOVO LO
DLO
TempMEnO
Oral MasM
ZygA
neOF
RGnInPl
Eye
DTT
VTT
Figure 49P0 #8
1.47mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionaca anterior commissure, antAOD ant olfactory nu, dorsAOL ant olfactory nu, latAOM ant olfactory nu, medialAOP ant olfactory nu, postAOrb alar orbital boneAOVP ant olfactory, ventropostCg2 cingulate cortex, area 2CrP cribriform plate ethmoidDLO dorsolat orbital cortexDTT dorsal tenia tectaEnO enamel organEye eyeFro frontal boneHardG Harderian glandInPl inner plexiform layerlo lateral olfactory tract LO lateral orbital cxLPS levator palpebraeM1 primary motor cxM2 secondary motor cxMasM masseter muscleMidM middle meatusMO medial orbital cxMRec medial rectus muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer Oral oral cavityOV olfactory ventriclePal palatine bonePir piriform cortexPrL prelimbic cxRGn ganglion cell layer SRec superior rectus muscleTempM temporalis muscleVO ventral orbital cxVTT ventral tenia tectaZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXIII
ADMB Book #4 23/8/06 2:33 PM Page CXXIV
FroFr3
AIDAIV
ClLO
PirDEn
lo
ne
OV
fmi
M1
M2Cg1
PrL
IL
DP
DTT
SHi
LSI AOVP
AOP
aca IEn
Nv
Tu
NasC
NSpt
Pal
HardG
MidM
5mx
iorbTempM ZygA
MasM
neOF
InPl RGn
Lens
Figure 50P0 #9
1.59 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionaca anterior commissure, antAID agranular insular cx, dorsalAIV agranular insular cx, ventAOP ant olfactory nu, postAOVP ant olfactory, ventropostCg1 cingulate cortex, area 1Cl claustrumDEn dorsal endopiriform nuDP dorsal peduncular cxDTT dorsal tenia tectafmi forceps min corpus callFr3 frontal cx, area 3Fro frontal boneHardG Harderian glandIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer iorb infraorbital arteryLens lenslo lateral olfactory tractLO lateral orbital cxLSI lat septal nu, intermedM1 primary motor cxM2 secondary motor cxMasM masseter muscleMidM middle meatusNasC nasal cavityne neuroepitheliumNSpt nasal septumNv navicular nu basal forebrainOF optic fiber layer OV olfactory ventriclePal palatine bonePir piriform cortexPrL prelimbic cxRGn ganglion cell layer SHi septohippocampal nuTempM temporalis muscleTu olfactory tubercleZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXV
ADMB Book #4 23/8/06 2:33 PM Page CXXVI
Lens
Pir
lo
LPS
AIV
AID
S1J
Fr3
M1
M2Cg1
PrL
IL
DP
ne
ClLO
DEn
IEn
aca
Acb
LSI
DTT
SHi
Nv
Tu
OpD
HardG
SRec
NasC
NasC
Paliorb
5mx
ZygA
IRec
fmi
dcw
OFRGn
InPl
LV
Vent
ne
Figure 51P0 #10
1.71mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuAID agranular insular cx, dorsalAIV agranular insular cx, ventCg1 cingulate cortex, area 1Cl claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDP dorsal peduncular cxDTT dorsal tenia tectafmi forceps min corpus callFr3 frontal cx, area 3HardG Harderian glandIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer iorb infraorbital arteryIRec inferior rectus muscleLens lensLO lateral orbital cxlo lateral olfactory tractLPS levator palpebraeLSI lat septal nu, intermedLV lateral ventricleM1 primary motor cxM2 secondary motor cxNasC nasal cavityne neuroepitheliumNv navicular nu basal forebrainOF optic fiber layer OpD optic discPal palatine bonePir piriform cortexPrL prelimbic cxRGn ganglion cell layer S1J prim somatosens, jaw SHi septohippocampal nuSRec superior rectus muscleTu olfactory tubercleVent ventricular space eyeZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXVII
ADMB Book #4 23/8/06 2:33 PM Page CXXVIII
Acb
LSINv
VDB
Tu
VP
AOrb
PirIEnaca
CPu DEn
Cl
lo
SRec
LPSAIV
AIDDI
FroS1J
dcw
Fr3
M1
M2Cg1
PrL
fmiIL
DP
DTT
SHi
ne
LV
OF
RGn
2n
HardG5mx
SphPal
NasC
NSpt
NasC
Pal
Oral
InPl
ne
rf
Vent
Vitr
Figure 52P0 #11
1.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcb accumbens nuAID agranular insular cx, dorsalAIV agranular insular cx, ventAOrb alar orbital boneCg1 cingulate cortex, area 1Cl claustrumCPu caudate putamen (striatum)dcw deep cerebral whiteDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectafmi forceps min corpus callFr3 frontal cx, area 3Fro frontal boneHardG Harderian glandIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer lo lateral olfactory tractLPS levator palpebraeLSI lat septal nu, intermedLV lateral ventricleM1 primary motor cxM2 secondary motor cxNasC nasal cavityne neuroepitheliumNSpt nasal septumNv navicular nu basal forebrainOF optic fiber layer Oral oral cavityPal palatine bonePir piriform cortexPrL prelimbic cxrf rhinal fissureRGn ganglion cell layer S1J prim somatosens, jaw SHi septohippocampal nuSphPal sphenopalatine ganglionSRec superior rectus muscleTu olfactory tubercleVDB nu vertical limb diagonal bandVent ventricular space eyeVitr vitreous cavity eyeVP ventral pallidum
ADMB Book #4 23/8/06 2:33 PM Page CXXIX
ADMB Book #4 23/8/06 2:33 PM Page CXXX
Eyelid
PSphW
SRec
AOrb
2n
ne
InPl RGn
OF
rfCPu
ec
ne
LV
Acb
aca
VPCB
VP
AcbShVP
VDB
MS
LSI
LSV
LSDSHi
DTT
fmi
DPIL
PrL
Cg1 M2M1
S1J
HardGIOrbF5mx
iorb
SphPal
Cl
DEn
IEn
Pir
DI
AID
AIV
Eye
Figure 53P0 #12
1.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve5mx 5n, maxillary divisionaca ant commiss ant limbAcb accumbens nuAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventAOrb alar orbital boneCB cell bridges vent striatumCg1 cingulate cortex, area 1Cl claustrumCPu caudate putamen (striatum)DEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectaec external capsuleEye eyeEyelid eyelidfmi forceps min corpus callHardG Harderian glandIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer iorb infraorbital arteryIOrbF infraorbital foramenLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMS medial septal nune neuroepitheliumOF optic fiber layer Pir piriform cortexPrL prelimbic cxPSphW presphenoid wingrf rhinal fissureRGn ganglion cell layer S1J prim somatosens, jaw SHi septohippocampal nuSphPal sphenopalatine ganglionSRec superior rectus muscleVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #4 23/8/06 2:33 PM Page CXXXI
ADMB Book #4 23/8/06 2:33 PM Page CXXXII
CPu
ec
S1J
Fro
GI
M1M2Cg1
Cg2cg
IG
gcc DTT
LSDLSD
LV
SHi
LSILSV
ne
ICjMMS
VDB
HDB
SIB
AcbShAcbC
aca
LSS
VP
CB
IEn
DEn
Pir
Cl
AIV
AID
DI
Pig
Ventne
PSphW
lo
AOrbSRec
2n
PSph
NasC
MRecLRec
IRec
Oral
SphPal 5mxiorb TempM
MasM
ManZygA
Tu Eye
Figure 54P0 #13
2.07 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventAOrb alar orbital boneCB cell bridges vent striatumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCPu caudate putamen (striatum)DEn dorsal endopiriform nuDI dysgranular insular cxDTT dorsal tenia tectaec external capsuleEye eyeFro frontal bonegcc genu corpus callosumGI granular insular cxHDB nu horizlimb diagonal bandICjM islands of Calleja, major IEn intermed endopiriform nuIG indusium griseumiorb infraorbital arteryIRec inferior rectus musclelo lateral olfactory tractLRec lat rectus muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMRec medial rectus muscleMS medial septal nuNasC nasal cavityne neuroepitheliumOral oral cavityPig pigment layer of the eyePir piriform cortexPSph presphenoid bonePSphW presphenoid wingS1J prim somatosens, jaw SHi septohippocampal nuSIB substantia innominata, basalSphPal sphenopalatine ganglionSRec superior rectus muscleTempM temporalis muscleTu olfactory tubercleVDB nu vertical limb diagonal bandVent ventricular space eyeVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXXIII
ADMB Book #4 23/8/06 2:33 PM Page CXXXIV
CPu
aca
DEnDEn
Cl
ec Fro
S1J
S1FL
M1M2Cg1
Cg2 cg
IG ne
DTT
SHi
LSD
LSI
MS
VDB
LSV
AcbC
AcbSh
PirIEn
LSS
VP
rf
lo
Pig
PSphW
ICj
CBVPVPSIB
HDB
acer
PSph2n
SRec
LRecMRec
IRec
TempM
TempM
Man
OptF
5mx
SphPal
NasC
Oral
Pal
MxB
Cor
ZygA
MasM
LVGI
DI
AID
AIV
Tu
S1DZ
Figure 55P0 #14
2.19 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve5mx 5n, maxillary divisionaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventCB cell bridges vent striatumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)DEn dorsal endopiriform nuDI dysgranular insular cxDTT dorsal tenia tectaec external capsuleFro frontal boneGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIRec inferior rectus musclelo lateral olfactory tractLRec lat rectus muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMRec medial rectus muscleMS medial septal nuMxB maxillary boneNasC nasal cavityne neuroepitheliumOptF optic foramenOral oral cavityPal palatine bonePig pigment layer of the eyePir piriform cortexPSph presphenoid bonePSphW presphenoid wingrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw SHi septohippocampal nuSIB substantia innominata, basalSphPal sphenopalatine ganglionSRec superior rectus muscleTempM temporalis muscleTu olfactory tubercleVDB nu vertical limb diagonal bandVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXXV
ADMB Book #4 23/8/06 2:33 PM Page CXXXVI
CPu
ec
ClAIV
rf
AID
DIGI
Fro
S1J
S1DZ
S1FL
M1M2Cg1
Cg2 cg
dcwIG
gcc
SHi LSD
LSI
PLdMS
LSV ne
AcbSh
AcbC
ac LSS
DEn
LAcbSh
Pir123 lo
PSphW
CB ICjVP
mfbVP
SIB
VDB
HDB ICj
SRec2n
acer
PSph
IEn
NasC
Pal
Oral MxB
5mx
iorb
SphPal
OptF IRecLRec
TempM
Cor
Man
MasM
ZygA
LV
Tu
Figure 56P0 #15
2.31 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1 layer 1 of cortex2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisionac anterior commissureAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventCB cell bridges vent striatumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)dcw deep cerebral whiteDEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleFro frontal bonegcc genu corpus callosumGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumiorb infraorbital arteryIRec inferior rectus muscleLAcbSh lateral accumbens shelllo lateral olfactory tractLRec lat rectus muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter musclemfb med forebrain bundleMS medial septal nuMxB maxillary boneNasC nasal cavityne neuroepitheliumOptF optic foramenOral oral cavityPal palatine bonePir piriform cortexPLd paralambdoid septal nuPSph presphenoid bonePSphW presphenoid wingrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw SHi septohippocampal nuSIB substantia innominata, basalSphPal sphenopalatine ganglionSRec superior rectus muscleTempM temporalis muscleTu olfactory tubercleVDB nu vertical limb diagonal bandVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:33 PM Page CXXXVII
ADMB Book #4 23/8/06 2:34 PM Page CXXXVIII
Figure 57P0 #16
2.43 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
CPu
LSV
LSI
PLd
MS
Ld
LSDSHi
cc
IG
Cg2
Cg1
cg
M2M1
S1FL
S1J
S1DZ
ec
ne
GIFro
DIAID
AIVrf
Cl
DEn
ac
AcbCAcbShLAcbSh
IEn Pir123 lo
ICjVPSIBVDB
HDB
2n
PSph
NasCPal
LRec
PSphW
Tu
TempM
Cor
Man
ZygA
5mx
iorb
SphPal
OralMasM
LV
1 layer 1 of cortex2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisionac anterior commissureAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)DEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleFro frontal boneGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumiorb infraorbital arteryLAcbSh lateral accumbens shellLd lambdoid septal zonelo lateral olfactory tractLRec lat rectus muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMS medial septal nuNasC nasal cavityne neuroepitheliumOral oral cavityPal palatine bonePir piriform cortexPLd paralambdoid septal nuPSph presphenoid bonePSphW presphenoid wingrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw SHi septohippocampal nuSIB substantia innominata, basalSphPal sphenopalatine ganglionTempM temporalis muscleTu olfactory tubercleVDB nu vertical limb diagonal bandVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CXXXIX
ADMB Book #4 23/8/06 2:34 PM Page CXL
CPu
LSS
IEn
lo
rfAIV
DEn
Cl
AID
DIFro
GI
ec
S1J
S1DZ
S1FLM1
M2Cg1
Cg2cg
IG
cc
SHi LSD
LV ne
LSI
SFi
MSLSV
ZLSHyMnPO
AcbSh
ac
STMA
AcbC
IPAC
VPLPO
SIB
HDB
VMPO 2n
PSph
NasC
SphPal5mx
iorb
ptgpal
ASph LPtg
Tu
MCPO ICj
TempM
Cor
TempM ZygA
Pal
Oral
Man
MasM
MPA
ICj
Pir
VOLT
AVPe
Figure 58P0 #17
2.55 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve5mx 5n, maxillary divisionac anterior commissureAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventASph alisphenoid boneAVPe ant ventral periventric nucc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)DEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleFro frontal boneGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumiorb infraorbital arteryIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMCPO magnocell preoptic nuMnPO median preoptic nuMPA medial preoptic areaMS medial septal nuNasC nasal cavityne neuroepitheliumOral oral cavityPal palatine bonePir piriform cortexPSph presphenoid boneptgpal pterygopalatine nrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw SFi septofimbrial nuSHi septohippocampal nuSHy septohypothalamic nuSIB substantia innominata, basalSphPal sphenopalatine ganglionSTMA bed nu st, med div, ant TempM temporalis muscleTu olfactory tubercleVMPO ventmed preoptic nuVOLT vasc organ lam terVP ventral pallidumZL zona limitansZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CXLI
ADMB Book #4 23/8/06 2:34 PM Page CXLII
Figure 59P0 #18
2.67 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3Vac
LTeracp
fLTer SHy
STMASTLP
GP
STLJ
STLD
CPu
Cl
LSISFi
LSV
LSDcc
Cg2
Cg1
cg
M2 M1S1FL
S1JS1DZ
S1DZO
S1ULp
GI
ec
DIAID
AIV
Pir1
23
loSHyPSAl
StASTMV
Fu
STLV
VP
IPACLSS
IEn
CxAICjCB
Tu
LPO
MPA
MPOL
AVPe
VMPO
VLPOSIB
MCPOHDB
2n
PSph
Pal
SphPal cav
6n 3n 4n
ptgpal5mx
ASphLPtg
Man
MasM
Cor
TempM
5oph
LV
DEn
3V
ZygA
IG
1 layer 1 of cortex2 layer 2 of cortex2n optic nerve3 layer 3 of cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveac anterior commissureacp anterior comm, posteriorAID agranular insular cx, dorsalAIV agranular insular cx, ventAl alar nuASph alisphenoid boneAVPe ant ventral periventric nucav cavernous sinusCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cl claustrumCor coronoid process mandibleCPu caudate putamen (striatum)CxA cortex-amyg transition DEn dorsal endopiriform nuDI dysgranular insular cxec external capsulef fornixFu bed nu st, fusiformGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLTer lemina terminalisLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralPal palatine bonePir piriform cortexPS parastrial nuPSph presphenoid boneptgpal pterygopalatine nS1DZ prim somatosens, dysgranul S1DZO prim somatosens, oral dysg S1FL prim somatosens, forelimbS1J prim somatosens, jaw S1ULp prim somatosens, upper lipSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalSphPal sphenopalatine ganglionStA strial part preoptic areaSTLD bed nu st, lat div, dorsal STLJ bed nu st, lat div, juxtacapSTLP bed nu st, lat div, posterior STLV bed nu st, lat div, ventral STMA bed nu st, med div, ant STMV bed nu st, med div, ventral TempM temporalis muscleTu olfactory tubercleVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CXLIII
ADMB Book #4 23/8/06 2:34 PM Page CXLIV
Figure 60P0 #19
2.79 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
CPuic
SHyf
ac
STMA STLP
STLD
STLJSTMV
STLVIPACSHy
StA PSAl
Fu
SFiTS
LTer
LSV
LSI
LSD
LVne
IG
cc
cgCg2
Cg1M2 M1
S1FL
S1DZ
S1ULp
ecS2
GI
DI FroDCl
VCl
AID
rfAIV
LSSCxA
lo
LPO VPMPA
MPOL
MPOM
AVPe
SIB
MCPOHDBVLPO
VMPOPSph
2n
Tu
ASph LPtg
NasCPal
5mx
5oph6n 3n 4n
Oral MasM
TempM
DEn
IEn
Pir
3V
ManZygA
2n optic nerve3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveac anterior commissureAID agranular insular cx, dorsalAIV agranular insular cx, ventAl alar nuASph alisphenoid boneAVPe ant ventral periventric nucc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)CxA cortex-amyg transition DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxec external capsulef fornixFro frontal boneFu bed nu st, fusiformGI granular insular cxHDB nu horizlimb diagonal bandic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLTer lemina terminalisLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialNasC nasal cavityne neuroepitheliumOral oral cavityPal palatine bonePir piriform cortexPS parastrial nuPSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalStA strial part preoptic areaSTLD bed nu st, lat div, dorsal STLJ bed nu st, lat div, juxtacapSTLP bed nu st, lat div, posterior STLV bed nu st, lat div, ventral STMA bed nu st, med div, ant STMV bed nu st, med div, ventral TempM temporalis muscleTS triangular septal nuTu olfactory tubercleVCl vent part claustrumVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CXLV
ADMB Book #4 23/8/06 2:34 PM Page CXLVI
CPu
LSS lo
rfVCl
DCl
ec
S1ULp
S1DZ
S1FL
cg
cc
IG
LV
LSD
TSSFi
LSI
SHyLTer
f BAC
STMPM STMPL
ic
STLP
acp
STLI
StHy
STMPI
LPO
MPA
MPOL
MPOM
Pe
SIB
PDPO
ac
PaAP
VLPO
VMPO2n
PSph
NasC
HDB
MCPO
VP
Tu
CxA2ASph
LPtg
Pal
Oral
cav
SphPal5mx
ptgpal
6n 3n 4nacer
Man
MasM
Cor
TempM
Cg2
Cg1M2 M1
GI
DI
AID
AIV
3V
ZygA
Pir
DEn
IPAC
Figure 61P0 #20
2.91 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division6n root of abducens nerveac anterior commissureacer anterior cerebral artacp anterior comm, posteriorAID agranular insular cx, dorsalAIV agranular insular cx, ventASph alisphenoid boneBAC bed nu ant commissurecav cavernous sinuscc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2Cor coronoid process mandibleCPu caudate putamen (striatum)CxA2 cortex-amyg trans, lr 2DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxec external capsulef fornixGI granular insular cxHDB nu horizlimb diagonal bandic internal capsuleIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLTer lemina terminalisLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMasM masseter muscleMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialNasC nasal cavityOral oral cavityPaAP paraventric hy, ant parvicellPal palatine bonePDPO posterodorsal preoptic nuPe periventricular hypothal nuPir piriform cortexPSph presphenoid boneptgpal pterygopalatine nrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1ULp prim somatosens, upper lipSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalSphPal sphenopalatine ganglionStHy striohypothalamic nuSTLI bed nu st, lat div, intermedSTLP bed nu st, lat div, posterior STMPI bed nu st, med div, postint STMPL bed nu st, med div, post lat STMPM bed nu st, med div, post medTempM temporalis muscleTS triangular septal nuTu olfactory tubercleVCl vent part claustrumVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CXLVII
ADMB Book #4 23/8/06 2:34 PM Page CXLVIII
CPu
st
LPO
VP
MPA
MPOL
VLPO
VMPO
StHy
PDPO
MPOC
MPOM SIB
HDB
MCPO
IPAC
LSS
Tu
LPtg
loCxA
IEnPirf
PaAP
APF
PTBAC
smPVA
SFOvhc
TSfi
SFi
neIVF
ic
GPSTLP
STM
PL
STM
PI
STM
PM
DEn
VClrf
AIVAIVAIDAID
DCl
ec S1ULp
S1BF
S1FL
S1HLM1M2
Cg1
Cg1cg
IGcc
df LSD
2n
NasC
Oral
SphPal
cav5mx
5oph
ptgpal
4n3n6n
Man
S1DZ
GI
S2
DI
PSph
LV
3V
3V
3VASph
Pe
Figure 62P0 #21
3.03 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveAID agranular insular cx, dorsalAIV agranular insular cx, ventAPF anterior perifornical nuASph alisphenoid boneBAC bed nu ant commissurecav cavernous sinuscc corpus callosumcg cingulumCg1 cingulate cortex, area 1CPu caudate putamen (striatum)CxA cortex-amyg transition DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxec external capsulef fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb acIVF interventricular foramenlo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLSD lat septal nu, dorsal partLSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxMan mandibleMCPO magnocell preoptic nuMPA medial preoptic areaMPOC medial preoptic nu, centralMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialNasC nasal cavityne neuroepitheliumOral oral cavityPaAP paraventric hy, ant parvicellPDPO posterodorsal preoptic nuPe periventricular hypothal nuPir piriform cortexPSph presphenoid bonePT paratenial thalamic nuptgpal pterygopalatine nPVA paraventricular thal nu, antrf rhinal fissureS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipSFi septofimbrial nuSFO subfornical organSIB substantia innominata, basalsm stria medullaris thalSphPal sphenopalatine ganglionst stria terminalisStHy striohypothalamic nuSTLP bed nu st, lat div, posterior STMPI bed nu st, med div, postint STMPL bed nu st, med div, post lat STMPM bed nu st, med div, post medTS triangular septal nuTu olfactory tubercleVCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidum
ADMB Book #4 23/8/06 2:34 PM Page CXLIX
ADMB Book #4 23/8/06 2:34 PM Page CL
CPu
RSD
RSGc
IG
cg
df
vhc CA3 Or
fi
M1 M2
S1HL
S1FL
S1DZ
S1BF
S1ULp
S2
GIDI
AIDAIV
rf
DCl
VCl
DEn
PirIEn
IPAC
loTempM
CxA
Tu
VP
GP
ic
RtSt
st
STMPL
SM
smRt
AVVL
AMRe
CM
PT PC
sm AD
IADAVDM
fSTMP
StHy
PaAP
3V
PaXi
MPOM
EA
LPOMPA
VLPOVMPO
MPOL SIB
HDB
MCPO
AA
PSph
NasC
Oral
SphPal6n 3n
5n
4n
ptgpal
LPtg
mcer
Cond
MasM
2n
Pe
ZygA
B
LV
3VIVF
acp
PVA
ialn
ASph
ne
Figure 63P0 #22
3.15 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2n optic nerve3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5n trigeminal nerve6n root of abducens nerveAA anterior amyg areaacp anterior comm, posteriorAD anterodorsal thalamic nuAID agranular insular cx, dorsalAIV agranular insular cx, ventAM anteromedial thalamic nuASph alisphenoid boneAVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)cg cingulumCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)CxA cortex-amyg transition DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxEA sublenticular extend amygf fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandIAD interanterodorsal thal nuialn inferior alveolar nerveic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb acIVF interventricular foramenlo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLV lateral ventricleM1 primary motor cxM2 secondary motor cxMasM masseter musclemcer middle cerebral arteryMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialNasC nasal cavityne neuroepitheliumOr oriens layer hippocampusOral oral cavityPaAP paraventric hy, ant parvicellPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir piriform cortexPSph presphenoid bonePT paratenial thalamic nuptgpal pterygopalatine nPVA paraventricular thal nu, antRe reuniens thalamic nurf rhinal fissureRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, up lipS2 2ary somatosensory cxSIB substantia innominata, basalSM nu stria medullarissm stria medullaris thalSphPal sphenopalatine ganglionst stria terminalisStHy striohypothalamic nuSTMP bed nu st, med div, post STMPL bed nu st, med div, post lat TempM temporalis muscleTu olfactory tubercleVCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumZygA zygomatic arch
ADMB Book #4 23/8/06 2:34 PM Page CLI
ADMB Book #4 23/8/06 2:34 PM Page CLII
Figure 64P0 #23
3.27 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
CPu
RSGc
RSD
cg
cc
dhc
dcw
M2 M1S1HL
S1FLS1DZ
ec
neCA3
DG
fiS2
S1BF
S1ULp
GIDI
AIDAIV
rf
VCl
DCl
DEn
GP
B
ic
stRtSt
AVVLAVVL
ADsmMHb LHb
PVA MD PC
PT
IAD
AVDMAVDM
AM
CM
RtVReRe
Xi
PaXiANS
sm
SM
EACf
STMPSTMP
StHyStHy
MPAMPAMPOLMPOL
VMPOVMPO
LPO
PaMPPaMP
SPaSPaPaV
PaMMPaMM
MPOMMPOM
ochsox
SCh VLPO
HDB
SIBMCPO
VP
acp
IPACLSS
ACo
AA
loTempM
Pir1
23
IEn
CxA1
23
Pe
Pal
SphPal5oph
5mx
6n 3n 4n
ptgpal
LPtg
Cond
MasM
ZygA
MPtg
PSph
LV
ASph
3V
3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveAA anterior amyg areaACo ant cortical amygdaloid nuacp anterior comm, posteriorAD anterodorsal thalamic nuAID agranular insular cx, dorsalAIV agranular insular cx, ventAM anteromedial thalamic nuANS access neurosecretory nu ASph alisphenoid boneAVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)cc corpus callosumcg cingulumCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)CxA1 cortex-amyg trans, lr 1DCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusdhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centec external capsulef fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandIAD interanterodorsal thal nuic internal capsuleIEn intermed endopiriform nuIPAC interst nu post limb acLHb lateral habenular nulo lateral olfactory tractLPO lat preoptic areaLPtg lat pterygoid muscleLV lateral ventricleM1 primary motor cxM2 secondary motor cxMasM masseter muscleMCPO magnocell preoptic nuMD mediodorsal thalamic nuMHb med habenular nuMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialMPtg medial pterygoid musclene neuroepitheliumoch optic chiasmPal palatine bonePaMM paravent hy, med magnocelPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir piriform cortexPSph presphenoid bonePT paratenial thalamic nuptgpal pterygopalatine nPVA paraventricular thal nu, antRe reuniens thalamic nurf rhinal fissureRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, up lipS2 2ary somatosensory cxSCh suprachiasmatic nuSIB substantia innominata, basalSM nu stria medullarissm stria medullaris thalsox supraoptic decussationSPa subparaventric zone hySphPal sphenopalatine ganglionst stria terminalisStHy striohypothalamic nuSTMP bed nu st, med div, post
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:34 PM Page CLIII
ADMB Book #4 23/8/06 2:34 PM Page CLIV
Figure 65P0 #24
3.39 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
CPu
icGP
RSGc
RSD M2 M1 S1HLS1FL
cg
cc
dcwne
S1BF
ec
S2
FC CA2 CA3
DGhif
CA1
fi
LDsm
MHb
LHb
MDPVA
IMD
IAMCM
Rh mt AM
AngT
AVCL VL
VA
VMRe
Xi VRe
PaXi
3V
Pe
ZIRA13
PaLM
JPLHJPLH
f
ANS
SPaPaV
PaMM
AHA PLH
EAM EAC
CeM
Rt
eml
IPACacp
Pir12
3
CxA123
BMA
ACoMCPO
LOT2AA
HDB
VLH
ESO
SO
SCh LA
ochsox
BSph
NasC
SphPal
Pal
5Gn/5n
ptgpal
LPtg
Oral
MPtgMc
MasM
ZygA
TempM
rf
DEn
AIV
AID
DI
GIDCl
VCl
I
VEn
6n
PaMP
stRtSt
S1DZ
LV
ialn
S1ULp
3V 3rd ventricle5Gn/5n trigem ganglion and nerve6n root of abducens nerveAA anterior amyg areaACo ant cortical amygdaloid nuacp anterior comm, posteriorAHA anterior hypothal area, antAID agranular insular cx, dorsalAIV agranular insular cx, ventAM anteromedial thalamic nuAngT angular thalamic nuANS access neurosecretory nu AV anteroventral thalamic nuBMA basomed amyg nu, antBSph basisphenoid bonecc corpus callosumCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)CxA1 cortex-amyg trans, lr 1DCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusDI dysgranular insular cxEAC sublent extend amyg, centEAM sublent extended amyg, medec external capsuleeml external medullary laminaESO episupraoptic nuf fornixFC fasciola cinereumfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandhif hippocampal fissureI intercalated nuclei amygialn inferior alveolar nerveIAM interanteromedthal nuic internal capsuleIMD intermediodorsal thal nuIPAC interst nu post limb acJPLH juxtaparaventricular lat hyLA lateroanterior hypothal nuLD laterodorsal thal nuLHb lateral habenular nuLOT2 nu lat olf tract, layer 2LPtg lat pterygoid muscleLV lateral ventricleM1 primary motor cxM2 secondary motor cxMasM masseter muscleMc Meckel’s cartilageMCPO magnocell preoptic nuMD mediodorsal thalamic nuMHb med habenular nuMPtg medial pterygoid musclemt mammillothalamic tractNasC nasal cavityne neuroepitheliumoch optic chiasmOral oral cavityPal palatine bonePaLM paravent hy, lat magnocellPaMM paravent hy, med magnocelPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thalamic nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyptgpal pterygopalatine nPVA paraventricular thal nu, antRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, up lipS2 2ary somatosensory cxSCh suprachiasmatic nusm stria medullaris thal
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:34 PM Page CLV
ADMB Book #4 23/8/06 2:34 PM Page CLVI
VPL
VL
LD
RSGc
RSDM2 M1 S1HL
S1ShS1DZ
S1BF
S1ULp
S2
GI
DI
AID
AIVrf
DCl
VClCPu
ec
dcw
cg
CA2
CA3
CA1
DGD3V
sccdhc
FC
MHb
LHb
sm fi
stRtStMDM
PVMDL
IMD
IAMAM
CL
PC
CM
mtVM
SubRh
ReXi
PaXiZIR
Rt
ic
B
DEn
acp
VEn
Pir123
CxABMA
CeMEACEAM
MCPO
HDBPLH
MeAD
AA
LOT1
2
3ACo
ASphVLHESO
SO
opt
LA
AHC
f
ANSJPLHPaLM
AH
SChDL
SChVM
sox
BSph
3VPaMP
SPa
PaV
NasC
Oral
Ptg
5Gn
MPtgMc
CondLPtg
ZygA
TempM
TempS
Pe
Figure 66P0 #25
3.51 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle5Gn trigeminal ganglionAA anterior amyg areaACo ant cortical amygdaloid nuacp anterior comm, posteriorAH anterior hypothalamic areaAHC anterior hy area, centralAID agranular insular cx, dorsalAIV agranular insular cx, ventAM anteromedial thalamic nuANS access neurosecretory nu ASph alisphenoid boneB basal nu (Meynert)BMA basomed amyg nu, antBSph basisphenoid boneCeM central amyg nu, med divcg cingulumCL centrolateral thalamic nuCM centromedian thalamic nuCond condylar process mandibleCPu caudate putamen (striatum)CxA cortex-amyg transition D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusdhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centEAM sublent extended amyg, medec external capsuleESO episupraoptic nuf fornixFC fasciola cinereumfi fimbria hippocampusGI granular insular cxHDB nu horizlimb diagonal bandIAM interanteromedthal nuic internal capsuleIMD intermediodorsal thal nuJPLH juxtaparaventricular lat hyLA lateroanterior hypothal nuLD laterodorsal thal nuLHb lateral habenular nuLOT1 nu lat olf tract, layer 1LPtg lat pterygoid muscleLSS lateral striatal stripeM1 primary motor cxM2 secondary motor cxMc Meckel’s cartilageMCPO magnocell preoptic nuMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMHb med habenular nuMPtg medial pterygoid musclemt mammillothalamic tractNasC nasal cavityopt optic tractOral oral cavityPaLM paravent hy, lat magnocellPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thalamic nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPtg pterygoid proces sphenoid PV paraventricular thalamic nuRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1HL prim somatosens, hindlimbS1Sh prim somatosens, shoulderS1ULp prim somatosens, upper lipS2 2ary somatosensory cxscc splenium corpus callosumSChDL suprachiasmatic, dorsolatSChVM suprachiasmatic, ventromedsm stria medullaris thalSO supraoptic nusox supraoptic decussationSPa subparaventric zone hyst stria terminalis
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:34 PM Page CLVII
ADMB Book #4 23/8/06 2:34 PM Page CLVIII
Figure 67P0 #26
3.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
VL
VPL
Rt
RSGc
RSD
cg
fmj
S1HLS1Sh S1DZ
S1BF
S1ULp
S2
GIDI
AIDAIV
CA1
CA2CA3 ne
DGD3V
MHb
sm
LH
MDM
PV
IMD MDLPC
CL
LDDM LDVL fi
ne
stRtSt
ic
CM
RhSub mt
VMGP
CPu
DEn
VEn
Pir
CxA
CeCCeMEP EA
ACocst
LOT2
AA BMAI
MeAD
MeAV
BAOT
VLHESOSO
PLHf
AHC
AHPStg
JPLH
ZIRA13VRe
ReXi
PaXi
PaMPPaLM
PaV
SPa
3V
Pe
SCh TuLH
sox
BSph
opt
5Gn/5n
Ptg
NasC
Oral
MPtg
cty
Mc
ialn
ptgpal
LPtg
Cond
TMJ
ZygA
TempMTempS
M1M2
3V 3rd ventricle5Gn/5n trigem ganglion and nerveAA anterior amyg areaACo ant cortical amygdaloid nuAHC anterior hy area, centralAHP ant hypothal area, postAID agranular insular cx, dorsalAIV agranular insular cx, ventBAOT bed nu access olfactory trBMA basomed amyg nu, antBSph basisphenoid boneCeC central amyg nu, capsularCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCond condylar process mandibleCPu caudate putamencst comm stria terminaliscty chorda tympani nerveCxA cortex-amyg transition D3V dorsal 3rd ventricleDEn dorsal endopiriform nuDG dentate gyrusDI dysgranular insular cxEA sublenticular extend amygEP entopeduncular nuESO episupraoptic nuf fornixfi fimbria hippocampusfmj forceps maj corpus callGI granular insular cxGP globus pallidusI intercalated nuclei amygialn inferior alveolar nerveic internal capsuleIMD intermediodorsal thal nuJPLH juxtaparaventricular lat hyLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLH lateral hypothalamic areaLOT2 nu lat olf tract, layer 2LPtg lat pterygoid muscleM1 primary motor cxM2 secondary motor cxMc Meckel’s cartilageMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMHb med habenular nuMPtg medial pterygoid musclemt mammillothalamic tractNasC nasal cavityne neuroepitheliumopt optic tractOral oral cavityPaLM paravent hy, lat magnocellPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir piriform cortexPLH peduncular part lat hyPtg pterygoid proces sphenoid ptgpal pterygopalatine nPV paraventricular thalamic nuRe reuniens thalamic nuRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1HL prim somatosens, hindlimbS1Sh prim somatosens, shoulderS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSCh suprachiasmatic nusm stria medullaris thalSO supraoptic nusox supraoptic decussationSPa subparaventric zone hyst stria terminalisStg stigmoid hypothal nuSub submedius thalamic nuTempM temporalis muscleTempS temporal bone, squamousTMJ temporomandibular jointTuLH tuberal region lat hy
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:34 PM Page CLIX
ADMB Book #4 23/8/06 2:34 PM Page CLX
VPM
Po
RSGc
RSD
M2M1
S1HLS1Tr
S1DZ
S1BF
S1ULp
S2
cg
fmj
D3VCA1
CA2
alv
LV
fi
LDVLLDDM
DGsmMHb
LHb
MDCPV
IMDMDL
CL
CA3
eml st
Rt
CPu GI
DI
AIPrf
VCl
DCl
GP
B
ic
EP
VM
PCCMRh
Re Submt
PaXiXi
3VPaPo
AHP
AHC
Pe
SCh
VMHSh
PeFLH
fPLH
ZIVZIRA13
PaDC
SPa
PaMP PTe
DEn
AStVEn
Pir123
LaCeL
CeCCeM
AL
AAcst
IBLA
BMAMeAD
MeAV ACo
TempS
BAOT
masn
ASph
Cond
LPtg
ptgpalcty
Mc
lgn
ialn
MPtg
5Gn
Ptg
Oral
NasC
BSph
RChLRCh sox
opt
SO
ne
Figure 68P0 #27
3.75mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle5Gn trigeminal ganglionAA anterior amyg areaACo ant cortical amygdaloid nuAHC anterior hy area, centralAHP ant hypothal area, postAIP agranular insular cx, postAL nu ansa lenticularisalv alveus hippocampusASph alisphenoid boneASt amygdalostriatal transitionB basal nu (Meynert)BAOT bed nu access olfactory trBLA basolat amyg nu, antBMA basomed amyg nu, antBSph basisphenoid boneCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)cst comm stria terminaliscty chorda tympani nerveD3V dorsal 3rd ventricleDCl dors part of claustrumDEn dorsal endopiriform nuDG dentate gyrusDI dysgranular insular cxeml external medullary laminaEP entopeduncular nuf fornixfi fimbria hippocampusfmj forceps maj corpus callGI granular insular cxGP globus pallidusI intercalated nuclei amygialn inferior alveolar nerveic internal capsuleIMD intermediodorsal thal nuLa lat amygdaloid nuLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatlgn lingual nerveLHb lateral habenular nuLPtg lateral pterygoid muscleLV lateral ventricleM1 primary motor cxM2 secondary motor cxmasn masseteric nerveMc Meckel’s cartilageMDC MD thal nu, centralMDL mediodorsal thalamic nu, latMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMHb med habenular nuMPtg medial pterygoid musclemt mammillothalamic tractNasC nasal cavityne neuroepitheliumopt optic tractOral oral cavityPaDC paraventric hy dorsal capPaMP paravent hy, med parvicellPaPo paraventricular hy nu, postPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPeFLH perifornical part of lat hyPir1 piriform cx, layer 1PLH peduncular part lat hyPo post thal nuclear groupPTe paraterete nuPtg pterygoid proces sphenoid ptgpal pterygopalatine nPV paraventricular thalamic nuRCh retrochiasmatic areaRChL retrochiasmatic, lateralRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1HL prim somatosens, hindlimbS1Tr prim somatosens, trunk S1ULp prim somatosens, upper lipS2 2ary somatosensory cx
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:34 PM Page CLXI
ADMB Book #4 23/8/06 2:35 PM Page CLXII
IMD
RSD
RSGc
RSGb
fmj
cg
M2M1
S1Tr
S1DZ
S1BFdcw
DSD3V
MHbLHb
sm DG
CA1
CA2
CA3
bscne
ecS1ULp
S2
GIDI
AIPrf
ClCPu
DLGLPLRLPMR
CLfrPVP
MDMMDL
PC
Po
VPMOPC
VPL
str
VG
IGL
stRt
GP
VM
VPPCCM
RRe
PHD Submt
A11
DA3V
PeDM
VMHDM
VMHVL
PeFLH
f
Arc RChL
ZID
ZIVA13
SubI
EP
icCeL DEn
La
CeCCeM
cstMCLH
MeADSTIA
BLAVEn
BLV
BMA
ACoMeAV
Pir123
TempS
TMJ
BAOT
SO
opt
sox
BSph
NasC
Ptg
5Gn
3n ictdmasn
ASph
LPtg
Cond
MasMialnMc
ctyASph
MPtg
fi
Figure 69P0 #28
3.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
PLH
3n oculomotor nerve3V 3rd ventricle5Gn trigeminal ganglionACo ant cortical amygdaloid nuAIP agranular insular cx, postArc arcuate hypothal nuASph alisphenoid boneBAOT bed nu access olfactory trBLA basolat amyg nu, antBLV basolat amyg, ventralBMA basomed amyg nu, antbsc brachium superior colliculusBSph basisphenoid boneCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCl claustrumCM central medial thal nuCond condylar process mandibleCPu caudate putamen (striatum)cst comm stria terminaliscty chorda tympani nerveD3V dorsal 3rd ventricleDA dorsal hypothal areadcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusDI dysgranular insular cxDLG dorsal lat geniculate nuDM dorsomed hypothal nuDS dorsal subiculumec external capsuleEP entopeduncular nuf fornixfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexusGI granular insular cxGP globus pallidusialn inferior alveolar nerveic internal capsuleictd internal carotid arteryIGL intergeniculate leafIMD intermediodorsal thal nuLa lat amygdaloid nuLHb lateral habenular nuLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLPtg lat pterygoid muscleM1 primary motor cxM2 secondary motor cxMasM masseter musclemasn masseteric nerveMc Meckel’s cartilageMCLH magnocell nu lat hypothalMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMHb med habenular nuMPtg medial pterygoid musclemt mammillothalamic tractNasC nasal cavityne neuroepitheliumOPC oval paracentral thal nuopt optic tractPC paracentral thal nuPe periventricular hypothal nuPeFLH perifornical part of lat hyPHD post hypothal area, dorsalPir1 piriform cx, layer 1PLH peduncular lat hypothalPo post thal nuclear groupPtg pterygoid proces sphenoidPTg pedunculopontine teg nu PVP paraventricular thal nu, postRChL retrochiasmatic, lateralrf rhinal fissureRRe retrouniens areaRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cRt reticular thal nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1Tr prim somatosens, trunk S1ULp prim somatosens, upper lipS2 2ary somatosensory cxsm stria medullaris thalSO supraoptic nu
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXIII
ADMB Book #4 23/8/06 2:35 PM Page CLXIV
SPF
RSGc
RSGb
fmj
cgRSD
MPtALPtA
S1TrS1DZ
S1BF
hbc
D3V
3V
sm ecS2
AuD
Au1
AuV
Ect
PRhrf
CPuic
LPMRLHbCL
frPVP
frPoMn
CM
PF
Po
VPMVPL
str
bscDLG
IMA
LPLR
VG
IGL
ZID
OPCVPPC
ml
PR
A11
mt
A13
ZIV
SubI
STh
ic
SubGst
CeL
CeMCeC
La
DEn
VEn Pir123
BLA
STIA IMePD
MeAD
BMABMP
BLV
PLCoMeAV
BAOT ACoASph
TempS
TMJ
LPtg
PLH
PH
DM
PeFLH
PeFf
Te opt
MTu
TuLH
VMH
VL
VMH
DM
ArcRCh
VM
HC
5Gn/5n4n
ASph
MPtg
cty
masn
ptgpal
Mc mxaMasM
Man
fi
Hi
Figure 70P0 #29
3.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle4n trochlear nerve5Gn/5n trigem ganglion and nerveACo ant cortical amygdaloid nuArc arcuate hypothal nuASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBAOT bed nu access olfactory trBLA basolat amyg nu, antBLV basolat amyg, ventralBMA basomed amyg nu, antBMP basomed amyg nu, postbsc brachium superior colliculusCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)cty chorda tympani nerveD3V dorsal 3rd ventricleDEn dorsal endopiriform nuDLG dorsal lat geniculate nuDM dorsomed hypothal nuec external capsuleEct ectorhinal cortexf fornixfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexushbc habenular commissureHi hippocampal regionI intercalated nuclei amygic internal capsuleIGL intergeniculate leafIMA intramedullary thalamic areaLa lat amygdaloid nuLHb lateral habenular nuLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLPtA lat parietal association cxLPtg lat pterygoid muscleMan mandibleMasM masseter musclemasn masseteric nerveMc Meckel’s cartilageMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMePD med amygd nu, posterodorsml medial lemniscusMPtA med parietal association cxMPtg medial pterygoid musclemt mammillothalamic tractMTu medial tuberal numxa maxillary arteryOPC oval paracentral thal nuopt optic tractPeF perifornical nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPo post thal nuclear groupPoMn posteromedian thal nuPR prerubral fieldPRh perirhinal cxptgpal pterygopalatine nPVP paraventricular thal nu, postRCh retrochiasmatic arearf rhinal fissureRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1Tr prim somatosens, trunk S2 2ary somatosensory cxsm stria medullaris thalSPF subparafascicular thal nust stria terminalisSTh subthalamic nuSTIA ST, intraamygdaloid divstr superior thalamic radiationSubG subgeniculate nuSubI subincertal nuTe terete hypothal nuTempS temporal bone, squamous
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXV
ADMB Book #4 23/8/06 2:35 PM Page CLXVI
ZIV
RSGc
RSGb
fmj
RSDV2MM V2ML
RSGa DShbc
D3V
MHbLHb
PV
PrC
V1V2L
dcw
Pt
S1
AuDHi
Au1
AuV
Ect
PRh
CPu
LPMR LPLRIMA
DLG
PoPF
fr VPM
VPL
ZID
VG
IGL
fi
A11 SPFPR
VPPC
ml
SubG
st
icSTh
PSThmtPHD
PHSMT
PeFLHMCLH
MePD I
STIA
CeC La
DEn
rf
TempS
TMJ
Cond
BLP
BLA
BLV
BMPMePV
AHiALPLCo
PMCo
PLHPeF
f
DMDMC
VMHDMVMHVL
MTu
TeTuLH
ictd
optsox
ArcD
ArcM ArcL
BSph
6n3n
5Gn/5n
ASph
PtgTPal
MPtg
Oral
5manLPtg
ASph
RAPir
MasM
Mc
4n
ptgpal
Pir
bsc
Figure 71P0 #30
4.11mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve4n trochlear nerve5Gn/5n trigem ganglion and nerve5man 5n, mandibular division6n root of abducens nerveAHiAL amygdalohip area, antlatArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLA basolat amyg nu, antBLP basolat amyg nu, postBLV basolat amyg, ventralBMP basomed amyg nu, postbsc brachium superior colliculusBSph basisphenoid boneCeC central amyg nu, capsularCond condylar process mandibleCPu caudate putamen (striatum)D3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nuDLG dorsal lat geniculate nuDM dorsomed hypothal nuDMC dorsomed hy nu, compactDS dorsal subiculumEct ectorhinal cortexf fornixfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexushbc habenular commissureHi hippocampal regionI intercalated nuclei amygic internal capsuleictd internal carotid arteryIGL intergeniculate leafIMA intramedullary thalamic areaLa lat amygdaloid nuLHb lateral habenular nuLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLPtg lat pterygoid muscleMasM masseter muscleMc Meckel’s cartilageMCLH magnocell nu lat hypothalMePD med amygd nu, posterodorsMePV med amyg nu, posteroventMHb med habenular numl medial lemniscusMPtg medial pterygoid musclemt mammillothalamic tractMTu medial tuberal nuopt optic tractOral oral cavityPeF perifornical nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPHD post hypothal area, dorsalPir piriform cortexPLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPt parietal cortexPtg pterygoid proces sphenoid ptgpal pterygopalatine nPV paraventricular thalamic nuRAPir rostral amygdalopiriform rf rhinal fissureRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cS1 primary somatosensory cxSMT submammillothalamic nusox supraoptic decussationSPF subparafascicular thal nust stria terminalisSTh subthalamic nuSTIA ST, intraamygdaloid divSubG subgeniculate nuTe terete hypothal nuTempS temporal bone, squamous
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXVII
ADMB Book #4 23/8/06 2:35 PM Page CLXVIII
ZIR
RSGc
RSGbRSGa DS
fmj
RSD
V2MM V2ML
V1
V2L
dcw
Hi
Pt
AuD
Au1
AuV
TeA
Ect
PRhrf
OPT
hbc
SCOPrC APT LP
IMADLGPo
PF
p1PAG
VPM
ZIDmlfr
RIPR
IGL
VG
CPu
La
IMGfi
SubG
ic
F
PH
mt GemPSTh
STh
PHA
3V
D3V
Cest DEn
BLPBLA
STIA
MePD
MCLH
PLHPeFLH
PeF
fDM
DMC
VMHVL
VMHDM
MTuArcLArcM
Teictd
3n
6n
5Gn/5n
PMCo
AHiAL
MePV
I
BMP
BLV
RAPir
PLCoASph Cond
TempS
TMJ
LPtg
masv
MasM
Gonial
McctyOvalWptgpal
Otic
MPtg
5man
NasC
HPtgTPal
Man
Pir123
bsc
Figure 72P0 #31
4.23 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve3V 3rd ventricle5Gn/5n trigem ganglion and nerve5man 5n, mandibular division6n root of abducens nerveAHiAL amygdalohip area, antlatAPT anterior pretectal nuArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLA basolat amyg nu, antBLP basolat amyg nu, postBLV basolat amyg, ventralBMP basomed amyg nu, postbsc brachium superior colliculusCe central amygdaloid nuCond condylar process mandibleCPu caudate putamen (striatum)cty chorda tympani nerveD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nuDLG dorsal lat geniculate nuDM dorsomed hypothal nuDMC dorsomed hy nu, compactDS dorsal subiculumEct ectorhinal cortexF nu fields of Forelf fornixfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexusGem gemini hypothalamic nuGonial gonial processhbc habenular commissureHi hippocampal regionHPtg hamulus pterygoid boneI intercalated nuclei amygic internal capsuleictd internal carotid arteryIGL intergeniculate leafIMA intramedullary thalamic areaIMG amyg intramedullary grLa lat amygdaloid nuLP lateral posterior thal nuLPtg lat pterygoid muscleMan mandibleMasM masseter musclemasv masseteric veinMc Meckel’s cartilageMCLH magnocell nu lat hypothalMePD med amygd nu, posterodorsMePV med amyg nu, posteroventml medial lemniscusMPtg medial pterygoid musclemt mammillothalamic tractMTu medial tuberal nuNasC nasal cavityOPT olivary pretectal nuOtic otic ganglionOvalW oval windowp1PAG p1 periaqueductal grayPeF perifornical nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPHA posterior hypothal areaPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPt parietal cortexptgpal pterygopalatine nRAPir rostral amygdalopiriform rf rhinal fissureRI rostral interstitial nu of mlfRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSCO subcommissural organst stria terminalisSTh subthalamic nuSTIA ST, intraamygdaloid div
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXIX
ADMB Book #4 23/8/06 2:35 PM Page CLXX
frPR
RSGb
RSGc
RSDV2MM
V2MLV1
V2L
Pt
AuD
Au1
AuV
TeA
Ect
PRh
RSGa Post DS
fmjdcw
MPT OPTpcSCO
PrCMCPC
TG APT
PLi LP
Lth
RPF
p1Rt
Eth
Sc PoDLG
MGMVPM
IGL
VGZID
ZIVF
A11
mtgfi
icSTh
PSTh
FFPH
PHAmt
MCLHPMD
SMT
MePV
MePDst
La
DEn
Pir1
TempS
23BLP
STIA
BMP
RAPir
PLCo
TMJ
Cond
LPtg
AHiAL
PMCo
PLHPeFf
DMV
DMDPe
VMH
PeFLH
VMHSh
A14
ArcL
ArcMMTu
Te
BSph
3nictd
6n 5Gn 5man
Otic
ptgpal Mc
Gonial
mxvMPtg
ASph
NasC
rf
LV
DG
CA3
D3V
LV
ml
4n
bsc
Figure 73P0 #32
4.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve4n trochlear nerve5Gn trigeminal ganglion5man 5n, mandibular division6n root of abducens nerveAHiAL amygdalohip area, antlatAPT anterior pretectal nuArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBMP basomed amyg nu, postbsc brachium superior colliculusBSph basisphenoid boneCond condylar process mandibleD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusDLG dorsal lat geniculate nuDMD dorsomed hypothal nu,dorsalDMV dorsomed hy nu, ventralDS dorsal subiculumEct ectorhinal cortexEth ethmoid thalamic nuF nu fields of Forelf fornixFF fields of Forelfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexusGonial gonial processic internal capsuleictd internal carotid arteryIGL intergeniculate leafLa lat amygdaloid nuLP lateral posterior thal nuLPtg lat pterygoid muscleLth lithoid nuLV lateral ventricleMc Meckel’s cartilageMCLH magnocell nu lat hypothalMCPC magnocell nu post commMePD med amygd nu, posterodorsMePV med amyg nu, posteroventMGM med geniculate nu, medialml medial lemniscusMPT medial pretectal nuMPtg medial pterygoid musclemt mammillothalamic tractmtg mammillotegmental tractMTu medial tuberal numxv maxillary veinNasC nasal cavityOPT olivary pretectal nuOtic otic ganglionp1Rt p1 reticular formationpc posterior commPe periventricular hypothal nuPeF perifornical nuPeFLH perifornical part of lat hyPH posterior hypothal nuPHA posterior hypothal areaPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPLi posterior limitans thal nuPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPo post thal nuclear groupPost postsubiculumPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPt parietal cortexptgpal pterygopalatine nRAPir rostral amygdalopiriform rf rhinal fissureRPF retroparafascicular nuRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSc scaphoid thal nuSCO subcommissural organSMT submammillothalamic nust stria terminalisSTh subthalamic nu
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXI
ADMB Book #4 23/8/06 2:35 PM Page CLXXII
PHA
RSGc
RSGbD3V RSGa
fmj
RSDV2MM V2ML
Post DS
V1
V2L
Pt
AuD
Au1
AuV
TeA
Ect
bsc
DG
MPT OTOPT
InWhPaCpc
csc
SCOp1PAG
MCPCLth
TGAPT
PLi
LP
MGPo
EthPILREth
p1RtDk
InC
PRfrmtg
VTAR PBP
mlZIC
ZIV
opt
VG
CA3LT
EpPSNR
PSTh STh
ic rf
PRh
DLEntLa
DEn
Pir12
3BLP
BMPAPir
AHiPM
AHiPL
PMCoPLCo
Cond
PLH
sumx
SuMM
SuML
mt
MnMMM ML
SNCD
PMD
PMVDTM
DM
VMH
ArcMArcL
MEE MEI
MTu
f
ArcD
BSph
NasC
HPtg
TPal
ASph
5Gnictd
ptgpalMc
Gonial masn
MPtg
ExOrb
LV
3V
Figure 74P0 #33
4.47 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricle5Gn trigeminal ganglionAHiPL amygdalohip area, postlatAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPT anterior pretectal nuArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBMP basomed amyg nu, postbsc brachium superior colliculusBSph basisphenoid boneCond condylar process mandiblecsc comm superior colliculusD3V dorsal 3rd ventricleDEn dorsal endopiriform nuDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDM dorsomed hypothal nuDS dorsal subiculumDTM dors tuberomammillary nuEct ectorhinal cortexEpP epipeduncular nuEth ethmoid thalamic nuExOrb exorbital glandf fornixfmj forceps maj corpus callfr fasciculus retroflexusGonial gonial processHPtg hamulus pterygoid boneic internal capsuleictd internal carotid arteryInC interstitial nu of CajalInWh intermediate white layer SCLa lat amygdaloid nuLP lateral posterior thal nuLT lat terminal nu acc optic trLth lithoid nuLV lateral ventriclemasn masseteric nerveMc Meckel’s cartilageMCPC magnocell nu post commMEE medial eminence, ext layerMEI medial eminence, internal layerMG med geniculate nuML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMnM medial mammillary nu, medMPT medial pretectal nuMPtg medial pterygoid musclemt mammillothalamic tractmtg mammillotegmental tractMTu medial tuberal nuNasC nasal cavityOPT olivary pretectal nuopt optic tractOT nu of the optic tractp1PAG p1 periaqueductal grayp1Rt p1 reticular formationPaC paracomm nu post comPBP parabrachial pigmented nupc posterior commPHA posterior hypothal areaPIL post intralaminar thal nuPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPLi posterior limitans thal nuPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPMV premammillary nu, ventPo post thal nuclear groupPost postsubiculumPR prerubral fieldPRh perirhinal cxPSTh parasubthalamic nuPt parietal cortexptgpal pterygopalatine nREth retroethmoid nurf rhinal fissureRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSCO subcommissural organ
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXIII
ADMB Book #4 23/8/06 2:35 PM Page CLXXIV
fr
mtg R
Pi
sss
RSGc
RSGbRSGa
Post
DS
PrS
LP
OTOPT
PPTSC
csc
ne
csc PCom
MCPC
Lth
DkInC
p1Rt
TG
APT
PLiPo
SG MGD
PoT MGMMGV
PIL
ZIC
DG
RSD V2MM
V2ML
dcw V1
V2L
Pt
AuD
Au1
AuV
CA1
TeA
Ect
PRh
rfDLEnt
DEn
LaLV
BLP
Pir1APir
trsPLCo
AHiPL
AHiPMVS
PMCo
ic
SNR
SNCDLT
optPP
CA3
PBP
ml
SuMMSuML
MnM
MM ML f
PSTh
VTAR
PMD
PMVDM
DTM
3V
ArcMP
ArcLP
MEI MEE
VTM
LH
5Gn
m53n
ictd6n ASph
NasC
HPtgTPal
Gonial
Mcptgpal
23
bsc
Figure 75P0 #34
4.59 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve3V 3rd ventricle5Gn trigeminal ganglion6n root of abducens nerveAHiPL amygdalohip area, postlatAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPT anterior pretectal nuArcLP arcuate hy nu, lateropostArcMP arcuate hy nu, med postASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postbsc brachium superior colliculuscsc comm superior colliculusdcw deep cerebral whiteDEn dorsal endopiriform nuDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDM dorsomed hypothal nuDS dorsal subiculumDTM dors tuberomammillary nuEct ectorhinal cortexf fornixfr fasciculus retroflexusGonial gonial processHPtg hamulus pterygoid boneic internal capsuleictd internal carotid arteryInC interstitial nu of CajalLa lat amygdaloid nuLH lateral hypothalamic areaLP lateral posterior thal nuLT lat terminal nu acc optic trLth lithoid nuLV lateral ventriclem5 motor root trigeminal nerveMc Meckel’s cartilageMCPC magnocell nu post commMEE medial eminence, ext layerMEI medial eminence, internal layerMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMnM medial mammillary nu, medmtg mammillotegmental tractNasC nasal cavityne neuroepitheliumOPT olivary pretectal nuopt optic tractOT nu of the optic tractp1Rt p1 reticular formationPBP parabrachial pigmented nuPCom nu posterior commPi pineal glandPIL post intralaminar thal nuPir1 piriform cx, layer 1PLCo posterolat cortical amygPLi posterior limitans thal nuPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPMV premammillary nu, ventPo post thal nuclear groupPost postsubiculumPoT posterior thal nu, triangularPP peripeduncular nuPPT posterior pretectal nuPRh perirhinal cxPrS presubiculumPSTh parasubthalamic nuPt parietal cortexptgpal pterygopalatine nR red nurf rhinal fissureRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSC superior colliculusSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNR s nigra, reticularsss superior sagittal sinusSuML supramammillary nu, lat SuMM supramammillary nu, medial TeA temporal associatin cx
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXV
ADMB Book #4 23/8/06 2:35 PM Page CLXXVI
R
RSGb
RSGc
Pi
sss
csc
RSD V2MM
RSGa
Post
V2ML
V1
DSPrS
OT
ZoSuG
Op
InG
InWh TG PPT
APT
PLiPo
SG
MGDneAq
PCom
p1Rt
V2L
AuD
Au1
AuV
TeA
Ect
PRh
DLEnt
MGM
MGV
PoT
PIL
DkInC
scp
mtgRLi
PrEW
SubB
DG
CA3
LTSNLSNCD
SNR
mlfrIF
IPFVTAR PBP
SNCM ic
hif
LV
VSPSThSuMLSuMM
MM
ML f
LM
PMDne
3V
ArcMP
PMVPLH
DG
AHiPMAPir trs
PMCoVTM pcer
4n
s53n
m55Gn
ASph
ictd
6nAPitMEE
MEI
ptgpal Mc
ne
Figure 76P0 #35
4.71 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5Gn trigeminal ganglion6n root of abducens nerveAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPit anterior lobe pituitaryAPT anterior pretectal nuAq aqueductArcMP arcuate hy nu, med postASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralcsc comm superior colliculusDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDS dorsal subiculumEct ectorhinal cortexf fornixfr fasciculus retroflexushif hippocampal fissureic internal capsuleictd internal carotid arteryIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPF interpedunc fossaLM lateral mammillary nuLT lat terminal nu acc optic trLV lateral ventriclem5 motor root trigeminal nerveMc Meckel’s cartilageMEE medial eminence, ext layerMEI medial eminence, internal layerMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialmtg mammillotegmental tractne neuroepitheliumOp optic nerve layer sup coll OT nu of the optic tractp1Rt p1 reticular formationPBP parabrachial pigmented nupcer post cerebral artPCom nu posterior commPi pineal glandPIL post intralaminar thal nuPLH peduncular part lat hyPLi posterior limitans thal nuPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPMV premammillary nu, ventPo post thal nuclear groupPost postsubiculumPoT posterior thal nu, triangularPPT posterior pretectal nuPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumPSTh parasubthalamic nuptgpal pterygopalatine nR red nuRLi rostral linear nu rapheRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cs5 sensory root trigem nscp superior Cb peduncleSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNL s nigra, lateralSNR s nigra, reticularsss superior sagittal sinusSubB subbrachial nuSuG superficial gray sup collSuML supramammillary nu, lat SuMM supramammillary nu, medial TeA temporal associatin cxTG tectal graytrs transverse sinusV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolat
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXVII
ADMB Book #4 23/8/06 2:35 PM Page CLXXVIII
Figure 77P0 #36
4.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
DpG
InWh
Pi
sss
RSGb
Op
InG
SuGZo RSGa
RSGc
RSD V2MMV2ML
V1
V2L
Post
DS
Pt
AuD
Au1
AuV
TeA
Ect
PRh
rf
DLEnt
S
PrSMGD
SGPo
APT
PlPAG
DMPAG
DLPAGLPAGAq
DkPrEW
MA3
InC
scp
RPC
RMC
PBPIF
RLi
IPR frPIF SNCD
ml
SNCD
PILPoT
MGMMGV
SubB
SNL
DG
hif
CA3
ic
SNCV
SNR
MT
IPF
lfp
tfp
Pnbas
LM
3n
pcer
DG
VSAHiPM APir
PMCo
trs
Mall
Incptgpal5Gn
4n
3n
m5
PPit
IPitAPit
BSph
ictdcpx
Ctd ASphptgcn
TT EAM
3n oculomotor nerve4n trochlear nerve5Gn trigeminal ganglionAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPit anterior lobe pituitaryAPT anterior pretectal nuAq aqueductASph alisphenoid boneAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralbas basilar arteryBSph basisphenoid bonecpx carotid plexusCtd carotid canalDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDS dorsal subiculumEAM sublent extended amyg, medEct ectorhinal cortexfr fasciculus retroflexushif hippocampal fissureic internal capsuleictd internal carotid arteryIF interfascicular nuInC interstitial nu of CajalInc incusInG intermed gray layer SCInWh intermediate white layer SCIPF interpedunc fossaIPit intermediate lobe pitIPR interpedunc nu, rostral sublfp longitudinal fasciculus ponsLM lateral mammillary nuLPAG lat periaqueductal graym5 motor root trigeminal nerveMA3 med access oculomotor nuMall malleusMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralml medial lemniscusMT med terminal nu acc optic trOp optic nerve layer sup coll PBP parabrachial pigmented nupcer post cerebral artPi pineal glandPIF parainterfascicular nu VTAPIL post intralaminar thal nuPlPAG pleoglial PAGPMCo posteromed cortical amygPn pontine nucleiPo post thal nuclear groupPost postsubiculumPoT posterior thal nu, triangularPPit posterior lobe pitPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumPt parietal cortexptgcn nerve of the pterygoid canalptgpal pterygopalatine nrf rhinal fissureRLi rostral linear nuRMC red nu, magnocell partRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cS subiculumscp superior Cb peduncleSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNCV s nigra, compact, vent tierSNL s nigra, lateralSNR s nigra, reticularsss superior sagittal sinusSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxtfp transverse fibers ponstrs transverse sinusTT tensor tympani muscleV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolat
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXIX
ADMB Book #4 23/8/06 2:35 PM Page CLXXX
VLL4n
ic
csc
sss
DMPAG
DLPAG
LPAGAq
PlPAG
DpWh
DpG
InWh
InG
Op
Zo
SuGRSGa
Post
RSGb
RSGcRSD
V2MMV2ML
V1
V2L
AuD
Au1
AuV
TeA
Ect
PRh
rf
DLEnt
S
LV
PrSMGD
MGVMGM
SGPoT
PIL
mRt
PaR
Dk InCPrEW
MA3
mlf
RPC
RMCRLi
IF
IPRIPDL
IPL
IPI IPF
IPC
Pn
PBPPIF SNCM
SNCD
SNR
SubB
tfp
Pntfp
bas
PPit
APit
IPit
mcpm5
s5
5Gn
AHiPM
PMCo
ptgpal
TempP
Apex
cpx
Ctd
ictdBSph
NasC
EAM
TT
ParP
trs
Mall
6n
Oral ExOrb
DG
Figure 78P0 #37
4.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
APir
4n trochlear nerve5Gn trigeminal ganglion6n root of abducens nerveAHiPM amygdalohip, posteromedApex apex of cochleaAPir amygdalopiriform transAPit anterior lobe pituitaryAq aqueductAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralbas basilar arteryBSph basisphenoid bonecpx carotid plexuscsc comm superior colliculusCtd carotid canalDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collEAM sublent extended amyg, medEct ectorhinal cortexExOrb exorbital glandic internal capsuleictd internal carotid arteryIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPF interpedunc fossaIPI interpedunc nu, intermedIPit intermediate lobe pitIPL interpedunc nu, lat subnuIPR interpedunc nu, rostral subLPAG lat periaqueductal grayLV lateral ventriclem5 motor root trigeminal nerveMA3 med access oculomotor nuMall malleusmcp middle cerebellar peduncleMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralmlf med longitudinal fasciculusmRt mesenceph reticular formNasC nasal cavityOp optic nerve layer sup coll Oral oral cavityPaR pararubral nuParP parietal platePBP parabrachial pigmented nuPIF parainterfascicular nu VTAPIL post intralaminar thal nuPlPAG pleoglial PAGPMCo posteromed cortical amyg nuPn pontine nucleiPost postsubiculumPoT posterior thal nu, triangularPPit posterior lobe pitPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumptgpal pterygopalatine nrf rhinal fissureRLi rostral linear nu rapheRMC red nu, magnocell partRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cS subiculums5 sensory root trigem nSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNR s nigra, reticularsss superior sagittal sinusSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxTempP temporal bone, petroustfp transverse fibers ponstrs transverse sinusTT tensor tympani muscleV1 primary visual cortexV2L 2ary visual cx, lat area
Refer to Index of Abbreviations for other entries
ADMB Book #4 23/8/06 2:35 PM Page CLXXXI
ADMB Book #4 23/8/06 2:35 PM Page CLXXXII
IPC
PnO
sssZo
SuGOp
InGInWh
DpGDMPAG DLPAG
LPAGneAq
A11
Dk
RSGa
RSGb
RSDV2MM
V2ML
V1
Post
V2L
AuD
Au1
AuVdcw
DpWhBIC
bic
TeA
Ect
PRh
DLEnt
ne
S
PrSSubB
trsParP
APir
AHiPM
PMCo
DG
SNL
SNR
SNCV
SNCD
mRt
PaR
RMC
InC
mlf
MA3
EW
RLi
IF PNPIF
PBP
ml
SNCM
cp
VLL
ILLll
RtTg
MnR
lfp
Pntfp
bas
mcpm5
s5
5Gnptgpal
Mall
TyC
EAM
TTTempP
CGn
cpx ictd
BSph
APit
IPit 6n
IPI
IPDL
IPAIPR
Figure 79P0 #38
5.07 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5Gn trigeminal ganglion6n root of abducens nerveAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPit anterior lobe pituitaryAq aqueductAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBSph basisphenoid boneCGn cochlear (spiral) ganglioncp cerebral pedunclecpx carotid plexusdcw deep cerebral whiteDG dentate gyrusDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collEAM sublent extended amyg, medEct ectorhinal cortexEW Edinger-Westphal nuictd internal carotid arteryIF interfascicular nuILL intermed nu lat lemniscusInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPA interpedunc nu, apical subnuIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPI interpedunc nu, intermedIPit intermediate lobe pitIPR interpedunc nu, rostral sublfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nerveMA3 med access oculomotor nuMall malleusmcp middle cerebellar peduncleml medial lemniscusmlf med longitudinal fasciculusMnR median raphe numRt mesenceph reticular formne neuroepitheliumOp optic nerve layer sup coll PaR pararubral nuParP parietal platePBP parabrachial pigmented nuPIF parainterfascicular nu VTAPMCo posteromed cortical amyg nuPN paranigral nu of the VTAPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPRh perirhinal cxPrS presubiculumptgpal pterygopalatine nRLi rostral linear nu rapheRMC red nu, magnocell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRtTg reticulotegmental nu ponsS subiculums5 sensory root trigem nSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNCV s nigra, compact, vent tierSNL s nigra, lateralSNR s nigra, reticularsss superior sagittal sinusSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxTempP temporal bone, petroustfp transverse fibers ponstrs transverse sinusTT tensor tympani muscleTyC tympanic cavityV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusZo zona layer sup coll
ADMB Book #4 23/8/06 2:35 PM Page CLXXXIII
ADMB Book #4 23/8/06 2:35 PM Page CLXXXIV
PnO
cp
DMPAG DLPAG
LPAGAqne
DpWhDpG
InWh
InG
OpSuG
Zo
Post
RSGa
RSGb
RSD
V2MMV2ML
V1
V2LPrSECIC
mRt
PaR
RMCvtgxRLi
EW
Su3CSu3
3PCInC
mlf
3N
PBPIF
IPA
IPC IPDLIPI
RRF
SNCD
SNR
SubB
SLV TeA
Ect
PRh
DLEntDGILL
VLL
MPL
RtTg
lfpll
mcp
AHiPM APir
PMCoParP
trs
5m 5s
7n7Gn
ptgpal
Mall
CD
ScTy
CGn
TT
HMall
EAM
ictd
cpxOral
BSph
APit
bas
tfp Pn
6n
MnR
PMnR
bicBIC
Figure 80P0 #39
5.19mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular6n root of abducens nerve7Gn facial nerve ganglion7n facial nerveAHiPM amygdalohip, posteromedAPir amygdalopiriform transitionAPit anterior lobe pituitaryAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBSph basisphenoid boneCD cochlear ductCGn cochlear (spiral) ganglioncp cerebral pedunclecpx carotid plexusDG dentate gyrusDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collEAM sublent extended amyg, medECIC external cx inferior collEct ectorhinal cortexEW Edinger-Westphal nuHMall handle of malleusictd internal carotid arteryIF interfascicular nuILL intermed nu lat lemniscusInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPA interpedunc nu, apical subnuIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPI interpedunc nu, intermedlfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal grayLV lateral ventriclem5 motor root trigeminal nMall malleusmcp middle cerebellar pedunclemlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial numRt mesenceph reticular formne neuroepitheliumOp optic nerve layer sup coll Oral oral cavityPaR pararubral nuParP parietal platePBP parabrachial pigmented nuPMCo posteromed cortical amyg nuPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPRh perirhinal cxPrS presubiculumptgpal pterygopalatine nRLi rostral linear nu rapheRMC red nu, magnocell partRRF retrorubral fieldRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRtTg reticulotegmental nu ponsS subiculums5 sensory root trigeminal nScTy scala tympaniSNCD s nigra, compact, dors tierSNR s nigra, reticularSu3 supraoculomotor PAGSu3C supraoculomotor capSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxtfp transverse fibers ponstrs transverse sinusTT tensor tympani muscleV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusvtgx vent tegmental decussationZo zona layer sup coll
ADMB Book #4 23/8/06 2:35 PM Page CLXXXV
ADMB Book #4 23/8/06 2:36 PM Page CLXXXVI
CEnt
ZoSuG
Op
V2MM
V2ML
V1
RSGa
RSD
InG
InWh
DpG
DpWhLPAG
DLPAGDMPAG
Aq
DRDVLPAG
Su3CSu33PC
3N
mlfDRV
InCPaR
RMC
RRF
ECIC
PostV2L
dcw
PrSSubBPrCnF
BIC bic
MiTg
cp
RRPTgxscp
CLi
IPA
MnR
PMnR
PnO
RtTg
ILLMPL
VLL
MPL ll
VLLmcp
m5
PaS
TeA
Ect
PRh
DLEnt
VIEnt
DIEnt
MEnt
trs
ParP
ptgpal
Inc
Mall
TT
TempP
7n
s5m5
ScVe
CGnCD
ScTy
EAM
HMall
CGnCD
ictd
Oral
BOcc
bas
tfp
Pn ml
lfpMVPO
Figure 81P0 #40
5.31 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular7n facial nerveAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBOcc basioccipital boneCD cochlear ductCEnt caudomed entothinal cxCGn cochlear (spiral) ganglionCLi caudal linear nu raphecp cerebral peduncledcw deep cerebral whiteDIEnt dorsintermed entorhinal cxDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralEAM sublent extended amyg, medECIC external cx inferior collEct ectorhinal cortexHMall handle of malleusictd internal carotid arteryILL intermed nu lat lemniscusInC interstitial nu of CajalInc incusInG intermed gray layer SCInWh intermediate white layer SCIPA interpedunc nu, apical subnulfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nerveMall malleusmcp middle cerebellar peduncleMEnt med entorhinal cxMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll Oral oral cavityPaR pararubral nuParP parietal platePaS parasubiculumPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPrCnF precuneiform areaPRh perirhinal cxPrS presubiculumPTg pedunculopontine tegmentalptgpal pterygopalatine nRMC red nu, magnocell partRR retrorubral nuRRF retrorubral fieldRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRtTg reticulotegmental nu ponss5 sensory root trigem nScTy scala tympaniScVe scala vestibuliSu3 supraoculomotor PAGSu3C supraoculomotor capSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxTempP temporal bone, petroustfp transverse fibers ponstrs transverse sinusTT tensor tympani muscleV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVIEnt ventral intermed entorhinalVLL ventral nu lat lemniscusVLPAG ventlat periaqueductal grayxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #4 23/8/06 2:36 PM Page CLXXXVII
ADMB Book #4 23/8/06 2:36 PM Page CLXXXVIII
PnO
MPL
ILL
DLL
cpRRPTg
xscpCLi
DRV mlf
RRF
MiTg PBG
SubBPrCnF
3N 3PCSu3
Su3C
VLPAGDRD
Aq LPAG
DLPAGDMPAG
DpWhECIC
DpG
InWh
InG
Op
PMnR
V2MM
V2ML
V1
V2LRSGa
BIC
bic
PaS
4n
TeA
Ect
PRhrf
LEnt
MEnt
CEnt
RtTg
MnR
PnCRIP
Tz
py
bas
CAT
MVPO
VLL
ll5TT
s5
mcp
7Gn
7nm5
TempP
ScVe
BOcc
LgCa
Oral SCM
ictd
ScTy
ScTyCD
CGn
CD
TyBu
EAM
TT
ptgpal
7n
RSD
dcw
Figure 82P0 #41
5.43 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellular4n trochlear nerve5TT motor trigem, tensor tymp7Gn facial nerve ganglion7n facial nerveAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBOcc basioccipital boneCAT nu central acoustic trCD cochlear ductCEnt caudomed entothinal cxCGn cochlear (spiral) ganglionCLi caudal linear nu raphecp cerebral peduncledcw deep cerebral whiteDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralEAM sublent extended amyg, medECIC external cx inferior collEct ectorhinal cortexictd internal carotid arteryILL intermed nu lat lemniscusInG intermed gray layer SCInWh intermediate white layer SCLEnt lateral entorhinal cxLgCa longus capitis musclell lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMEnt med entorhinal cxMiTg microcell tegmental numlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll Oral oral cavityPaS parasubiculumPBG parabigeminal nuPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral PrCnF precuneiform areaPRh perirhinal cxPTg pedunculopontine tegmentalptgpal pterygopalatine npy pyramidal trrf rhinal fissureRIP raphe interpositus nuRR retrorubral nuRRF retrorubral fieldRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRtTg reticulotegmental nu ponss5 sensory root trigem nSCM superior constrictorScTy scala tympaniScVe scala vestibuliSu3 supraoculomotor PAGSu3C supraoculomotor capSubB subbrachial nuTeA temporal associatin cxTempP temporal bone, petrousTT tensor tympani muscleTyBu tympanic bullaTz nu trapezoid bodyV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusVLPAG ventlat periaqueductal grayxscp decussation sup cereb ped
ADMB Book #4 23/8/06 2:36 PM Page CLXXXIX
ADMB Book #4 23/8/06 2:36 PM Page CXC
PnO
MPL DLL
ll
Op
InG
InWh
DpG
DpWhDMPAG DLPAG
LPAG
VLPAG
DR
Aq
4NmlfDRI
CLi xscpSPTg
PTg
MiTg PBG
CxCnF
ATg
MnRPMnR
ts
DMTg
ECIC
BIC
bic
mcp
Pr55TT
A7
rsPnC
RtTg
RIP
Tz
bas
BOcc
CAT
MVPO
VLL7n
s5
VeGn
8vn
7n
ptgpal
HMall
EAM
CD
ScTyScTy
CD
ScVeCGn
10Gn
Oral
py
Figure 83P0 #42
5.55 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu5TT motor trigem, tensor tymp7n facial nerve8vn vestibular root of 8th nerve10Gn vagus nerve ganglionA7 A7 noradrenaline cellsAq aqueductATg anterior tegmental nubas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBOcc basioccipital boneCAT nu central acoustic trCD cochlear ductCGn cochlear (spiral) ganglionCLi caudal linear nu rapheCnF cuneiform nuCx cerebral cortexDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDR dorsal raphe nuDRI dorsal raphe, interfascicularEAM sublent extended amyg, medECIC external cx inferior collHMall handle of malleusInG intermed gray layer SCInWh intermediate white layer SCll lateral lemniscusLPAG lat periaqueductal graymcp middle cerebellar peduncleMiTg microcell tegmental numlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll Oral oral cavityPBG parabigeminal nuPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPTg pedunculopontine tegmentalptgpal pterygopalatine npy pyramidal trRIP raphe interpositus nurs rubrospinal tractRtTg reticulotegmental nu ponss5 sensory root trigem nScTy scala tympaniScVe scala vestibuliSPTg subpeduncular tegmental nuts tectospinal trTz nu trapezoid bodyVeGn vestibular n ganglionVLL ventral nu lat lemniscusVLPAG ventlat periaqueductal grayxscp decussation sup cereb ped
ADMB Book #4 23/8/06 2:36 PM Page CXCI
ADMB Book #4 23/8/06 2:36 PM Page CXCII
MiTg
Op
InGInWh
DpG
DpWh
ECIC
PrCnF
DMPAGDLPAG
LPAGAq
VLPAG CnF
BIC bic
PBGCx
Cx
PTg
Pa4
4NDR
DRI mlf
scpRbd
ATg
ts
DMTg
RtTgL
PMnR
PnOMnR
A7
P5
5N
MPLDLL
KF vsc
Pr5
5TT
PnC
RIPLVPO
CATMVPO
Tz
bas
ScTy
7n
cp
sp5
VeGn
TempP
8vn
VestUtr
OvalW Stap
ptgpal
7n
Mall
EAMScVe
8cn
CGn
CD
TyBu10Gn
BOcc
Oral
SPTg
py
Figure 84P0 #43
5.67mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu5N motor trigeminal nu5TT motor trigem, tensor tymp7n facial nerve8cn cochlear root 8th nerve8vn vestibular root of 8th nerve10Gn vagus nerve ganglionA7 A7 noradrenaline cellsAq aqueductATg anterior tegmental nubas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBOcc basioccipital boneCAT nu central acoustic trCD cochlear ductCGn cochlear (spiral) ganglionCnF cuneiform nucp cerebral peduncleCx cerebral cortexDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDR dorsal raphe nuDRI dorsal raphe, interfascicularEAM sublent extended amyg, medECIC external cx inferior collInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse nuLPAG lat periaqueductal grayLVPO lateroventral periolivary nuMall malleusMiTg microcell tegmental numlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll Oral oral cavityOvalW oval windowP5 peritrigeminal zonePa4 paratrochlear nuPBG parabigeminal nuPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oralPr5 principal sensory trigem nuPrCnF precuneiform areaPTg pedunculopontine tegmentalptgpal pterygopalatine npy pyramidal trRbd rhabdoid nuRIP raphe interpositus nuRtTgL reticulotegmental pons, latscp superior Cb peduncleScTy scala tympaniScVe scala vestibulisp5 spinal trigem tractSPTg subpeduncular tegmental nuStap stapedius boneTempP temporal bone, petrousts tectospinal trTyBu tympanic bullaTz nu trapezoid bodyUtr utricleVeGn vestibular n ganglionVest vestibule of the inner earVLPAG ventlat periaqueductal grayvsc ventral spinocerebellar tr
ADMB Book #4 23/8/06 2:36 PM Page CXCIII
ADMB Book #4 23/8/06 2:36 PM Page CXCIV
Cx
trs
ParP
Op
InG
InWh
DpG
ECIC
bicBIC
DpWh
DMPAG DLPAG
LPAGneAq
DRD DRLVLPAG
PDRDRV
DRI
mlf Pa4
PrCnF
CnF MiTgPBG
PTgDLL
MPL
KF mcpSu5
SubCD
PnOPMnR
DMTgMnR
ne
SubCV
5TT Pr5
5NP5
ASCC
HSCCA
sp5
VeGn
8vn
A5
rs 7n
LSO LVPOSPO
PnC
RIP
PnV
RMgml Tz
py
bas
RPa
MVPO
ScTy CGn
8cn
BOcc
Oral
10Gn
ictd TyBu
CD
ScVeMall
EAM
Stap
ptgpal
7n
8vn
Vest
Figure 85P0 #44
5.79 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5N motor trigeminal nu5TT motor trigem, tensor tymp7n facial nerve8cn cochlear root 8th nerve8vn vestibular root of 8th nerve10Gn vagus nerve ganglionA5 A5 noradrenaline cellsAq aqueductASCC anterior semicirc canalbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusBOcc basioccipital boneCD cochlear ductCGn cochlear (spiral) ganglionCnF cuneiform nuCx cerebral cortexDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralEAM sublent extended amyg, medECIC external cx inferior collHSCCA horizontal SCCictd internal carotid arteryInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse nuLPAG lat periaqueductal grayLSO lat superior oliveLVPO lateroventral periolivary nuMall malleusmcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nune neuroepitheliumOp optic nerve layer sup coll Oral oral cavityP5 peritrigeminal zonePa4 paratrochlear nuParP parietal platePBG parabigeminal nuPDR posterodors raphe nuPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral PnV pontine retic nu, ventralPr5 principal sensory trigem nuPrCnF precuneiform areaPTg pedunculopontine tegmentalptgpal pterygopalatine npy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractScTy scala tympaniScVe scala vestibulisp5 spinal trigem tractSPO superior paraolivary nuStap stapedius boneSu5 supratrigeminal nuSubCD subcoeruleus nu, dorsal SubCV subcoeruleus nu, ventral trs transverse sinusTyBu tympanic bullaTz nu trapezoid bodyVeGn vestibular n ganglionVest vestibule of the inner earVLPAG ventlat periaqueductal gray
ADMB Book #4 23/8/06 2:36 PM Page CXCV
ADMB Book #4 23/8/06 2:36 PM Page CXCVI
HSCCA
Fro/Par
ParP
trs
OpInG
InWh
DpG
ECIC
DpWh
DMPAG DLPAG
LPAGAq ne
VLPAG
CnFSag
PBGMiTg
ll
DLL
PTgLPBLDTg
DRLDRD
DRVPDR
LDTgMPB
mlfDRI
VTgPnO Su5
vsc
KF
5N
A7
P5
PnR
DMTg
mlfne
PrSsp5
VCA
Cb
mcp
PnCRIP
rs
7n
LSOSPORMg
PnR
mlpyRPa
bas
MVPO
MSO
LVPO
IAud
VeGn
8cn
CGnScTy
Vest
ScVe
Stap
StapM
7n
CD10Gn
BOcc
Figure 86P0 #45
5.91 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5N motor trigeminal nu7n facial nerve8cn cochlear root 8th nerve10Gn vagus nerve ganglionA7 A7 noradrenaline cellsAq aqueductbas basilar arteryBOcc basioccipital boneCb cerebellumCD cochlear ductCGn cochlear (spiral) ganglionCnF cuneiform nuDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralECIC external cx inferior collFro/Par frontal and parietal bonesHSCCA horizontal SCCIAud internal auditory meatusInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse nuLDTg laterodor tegmental null lateral lemniscusLPAG lat periaqueductal grayLPB lateral parabrachial nuLSO lat superior oliveLVPO lateroventral periolivary numcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMPB medial parabrachial nuMSO medial superior oliveMVPO medioventral periolivary nune neuroepitheliumOp optic nerve layer sup coll P5 peritrigeminal zoneParP parietal platePBG parabigeminal nuPDR posterodors raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral PnR pontine raphe nuPrS presubiculumPTg pedunculopontine tegmentalpy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractSag sagulum nuScTy scala tympaniScVe scala vestibulisp5 spinal trigem tractSPO superior paraolivary nuStap stapedius boneStapM stapedius muscleSu5 supratrigeminal nutrs transverse sinusVCA ventral cochlear nu, ant VeGn vestibular n ganglionVest vestibule of the inner earVLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trVTg vent tegmental nu
ADMB Book #4 23/8/06 2:36 PM Page CXCVII
ADMB Book #4 23/8/06 2:36 PM Page CXCVIII
PBG
MiTg
ll
DLL
CnF
CIC
ECIC
trs
ASCC
Op
InG
InWh
DpG
DpWh
DMPAGDLPAG
LPAG
AqVLPAG
DRD
VTg
LDTgVLDTg
Bar
SubCA
MPB
LPBLPBE
KF
DRV
DMTg EVe
Su5
vsc
mcpscp
CGB
6N g7
IRt
Gi 6RBSu5
PCRt
Pr5 sp5
VCA
Cb
VeGn
IAud6n
7DI7DL
7L7VI7DM
7VMLPGiGiA
RIP
4V
ne
RMg
RPa
bas
ELS
Utr
TempPHSCCA
7n
StapMVest
CDCorti
8cn
CGn
ScTy
ptgpalTyBu
ictd
CtdB
10GnLgCa
BOcc
8cn
SubCD
P7
Figure 87P0 #46
6.03 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle6N abducens nu6n root of abducens nerve6RB abducens, retractor bulbi7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8cn cochlear root 8th nerve10Gn vagus nerve ganglionAq aqueductASCC anterior semicirc canalBar Barrington’s nubas basilar arteryBOcc basioccipital boneCb cerebellumCD cochlear ductCGB central gray, beta partCGn cochlear (spiral) ganglionCIC central nu inf colliculusCnF cuneiform nuCorti organ of CortiCtdB carotid bodyDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralECIC external cx inferior collELS endolymphatic sacEVe nu origin efferents ve ng7 genu facial nerveGi gigantocellular reticular nuGiA gigantocellular retic, alphaHSCCA horizontal SCCIAud internal auditory meatusictd internal carotid arteryInG intermed gray layer SCInWh intermediate white layer SCIRt intermed reticular nuKF Kˆlliker-Fuse nuLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventLgCa longus capitis musclell lateral lemniscusLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPGi lat paragigantocellular numcp middle cerebellar peduncleMiTg microcell tegmental nuMPB medial parabrachial nune neuroepitheliumOp optic nerve layer sup coll P7 perifacial zonePBG parabigeminal nuPCRt parvicell reticular nuPr5 principal sensory trigem nuptgpal pterygopalatine nRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nuscp superior Cb peduncleScTy scala tympanisp5 spinal trigem tractStapM stapedius muscleSu5 supratrigeminal nuSubCA subcoeruleus nu, alpha SubCD subcoeruleus nu, dorsal TempP temporal bone, petroustrs transverse sinusTyBu tympanic bullaUtr utricleVCA ventral cochlear nu, ant VeGn vestibular n ganglionVest vestibule of the inner earVLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trVTg vent tegmental nu
ADMB Book #4 23/8/06 2:36 PM Page CXCIX
ADMB Book #4 23/8/06 2:36 PM Page CC
DMTg
SC
ECIC
CICDMPAGDLPAG
LPAG
Aq
VLPAGCnF MiTg
DLLLPB
DRDLDTg
scpMPBLDTgV
mlf
DRV
VTgBar
SuVeLPBE
mcp
CbMVeMC
SubCMVePC
SGe EVe7n6N
CGA4V
CGGmlf
RIP GiIRt
Su5
PCRtA
Su5Pr5
VCA
8nsp5
rs
A5
SuS
7L7VI
7DI7DMLPGi
7VMGiA
RMg
py
bas
RPa
Figure 88P0 #47
6.15 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle6N abducens nu7DI facial nu, dors intermedial7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8n vestibulocochlear nerveA5 A5 noradrenaline cellsAq aqueductBar Barrington’s nubas basilar arteryCb cerebellumCGA central gray, alpha partCGG central gray, gamma partCIC central nu inf colliculusCnF cuneiform nuDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralECIC external cx inferior collEVe nu origin efferents ve nGi gigantocellular reticular nuGiA gigantocellular retic, alphaIRt intermed reticular nuLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPGi lat paragigantocellular numcp middle cerebellar peduncleMiTg microcell tegmental numlf med longitudinal fasciculusMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulPCRtA parvicell reticular nu, alphaPr5 principal sensory trigem nupy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractSC superior colliculusscp superior Cb peduncleSGe supragenual nusp5 spinal trigem tractSu5 supratrigeminal nuSubC subcoeruleus nuSuS superior salivatory nuSuVe superior vestibular nuVCA ventral cochlear nu, ant VLPAG ventlat periaqueductal grayVTg vent tegmental nu
ADMB Book #4 23/8/06 2:36 PM Page CCI
ADMB Book #2 24/8/06 10:45 PM Page CCII
ASCC
SC
ECIC
CIC
LPAG
DMPAGDLPAG
VLPAG
AqCnF
SagLPB
scp
MPBLC
LDTg
DRD
DTgLDTgV
PDTg
BarCGBCGOMVePC
MVeMC
SuVe
LPBE
scp
mcp
Cb
VCAPr5
5SolSol
IRt
EVeSGeg7
DPGi
4VPr
CGA
PCRtA7SH
Gi
RIP
GiA
RMgpyRPa
bas
6n
SuS
A5
Sp5O8n
sp5
7L
7DL
7VILPGi
7DM
7VM
7DI
Utr
HSCCA
TempP
StapM
7n
8vn
ELS
CD
ScTy
TyBu
ictdCtdB
LgCa
BOcc
Figure 89P0 #48
6.27 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6n root of abducens nerve7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve7SH facial motor nu, stylohyoid7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8n vestibulocochlear nerve8vn vestibular root of 8th nerveA5 A5 noradrenaline cellsAq aqueductASCC anterior semicirc canalBar Barrington’s nubas basilar arteryBOcc basioccipital boneCb cerebellumCD cochlear ductCGA central gray, alpha partCGB central gray, beta partCGO central gray, nu OCIC central nu inf colliculusCnF cuneiform nuCtdB carotid bodyDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDPGi dors paragigantocellular nuDRD dorsal raphe nu, dorsal DTg dorsal tegmental nuECIC external cx inferior collELS endolymphatic sacEVe nu origin efferents ve ng7 genu facial nerveGi gigantocellular reticular nuGiA gigantocellular retic, alphaHSCCA horizontal SCCictd internal carotid arteryIRt intermed reticular nuLC locus coeruleusLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventLgCa longus capitis muscleLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPGi lat paragigantocellular numcp middle cerebellar peduncleMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulPCRtA parvicell reticular nu, alphaPDTg posterodors tegmental nuPr prepositus nuPr5 principal sensory trigem nupy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nuSag sagulum nuSC superior colliculusscp superior Cb peduncleScTy scala tympaniSGe supragenual nuSol nu of solitary tractsp5 spinal trigem tractSp5O spinal trigeml nu, oralStapM stapedius muscleSuS superior salivatory nuSuVe superior vestibular nuTempP temporal bone, petrousTyBu tympanic bullaUtr utricleVCA ventral cochlear nu, ant VLPAG ventlat periaqueductal gray
ADMB Book #2 24/8/06 10:45 PM Page CCIII
ADMB Book #2 24/8/06 10:45 PM Page CCIV
Cb
SuVe
SCCom
DCIC
DMPAG
DLPAG
LPAG
CIC ECIC
CnF SagVLPAG
Aq
DRCDTgP
DTgC
LDTg
Bar LC
PDTg
Sph
4VPr
MVePC
MPBscp
LPB mcp
VCAMVeMC
8n
IRtDPGi Sp5O
5SolSol
PCRtA
Gi
LPGiGiA
RMg
pyC1
bas
RPa
7N
ELSUtr
8n
I9Gn
BOcc
10GnCtdB
ictd
TyBu
ScTy
ScTy
CD
StapM
StyMF
7n
TyC
HSCC
ASCC
LR4V
sp5
Figure 90P0 #49
6.39 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans7N facial nu7n facial nerve8n vestibulocochlear nerve10Gn vagus nerve ganglionAq aqueductASCC anterior semicirc canalBar Barrington’s nubas basilar arteryBOcc basioccipital boneC1 C1 adrenaline cellsCb cerebellumCD cochlear ductCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusCtdB carotid bodyDCIC dors cx inf colliculusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDPGi dors paragigantocellular nuDRC dorsal raphe nu, caudal DTgC dors tegmental nu, centralDTgP dors tegmental nu, pericentECIC external cx inferior collELS endolymphatic sacGi gigantocellular reticular nuGiA gigantocellular retic, alphaHSCC horizontal semicircular canalI9Gn inferior ganglion 9nictd internal carotid arteryIRt intermed reticular nuLC locus coeruleusLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventriclemcp middle cerebellar peduncleMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulPCRtA parvicell reticular nu, alphaPDTg posterodors tegmental nuPr prepositus nupy pyramidal trRMg raphe magnus nuRPa raphe pallidus nuSag sagulum nuSC superior colliculusscp superior Cb peduncleScTy scala tympaniSol nu of solitary tractsp5 spinal trigem tractSp5O spinal trigeml nu, oralSph sphenoid nuStapM stapedius muscleStyMF stylomastoid foramenSuVe superior vestibular nuTyBu tympanic bullaTyC tympanic cavityUtr utricleVCA ventral cochlear nu, ant VLPAG ventlat periaqueductal gray
ADMB Book #2 24/8/06 10:45 PM Page CCV
ADMB Book #2 24/8/06 10:45 PM Page CCVI
LR4V
SCCom
DMPAGDLPAG
LPAG
DCIC
ECICCIC
CnFSag
Sim
trsAq
VLPAGMe5
MPB LPB
LDTg
DTgme5
LCBar
PDTgMVePC
Sph
Pr4V
SuVe
mcp scp
icp
LVe
MVeMC
ASCCHem
PFlplf
Fl
VCA
VCP8vn
5SolSol
IRtDPGi
Gi
PCRtASp5I
ELS HSCC
StapM
7nScTy
CD8n7L
7DL7DI
7VI7VMLPGi7DM
GiA
RMg
py
bas
RPa
I9Gn
ictd
CtdB
ectd
ty9
sp5
Figure 91P0 #50
6.51 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8n vestibulocochlear nerve8vn vestibular root of 8th nerveAq aqueductASCC anterior semicirc canalBar Barrington’s nubas basilar arteryCD cochlear ductCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusCtdB carotid bodyDCIC dors cx inf colliculusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDPGi dors paragigantocellular nuDTg dorsal tegmental nuECIC external cx inferior collectd external carotid arteryELS endolymphatic sacFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaHem hemisphere of cerebellumHSCC horizontal semicircular canalI9Gn inferior ganglion 9nicp inf cerebellar peduncleictd internal carotid arteryIRt intermed reticular nuLC locus coeruleusLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular numcp middle cerebellar peduncleMe5 mesencephalic trigem nume5 mesencephalic trigem tractMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulPCRtA parvicell reticular nu, alphaPDTg posterodors tegmental nuPFl paraflocculusplf posterolateral fissurePr prepositus nupy pyramidal trRMg raphe magnus nuRPa raphe pallidus nuSag sagulum nuSC superior colliculusscp superior Cb peduncleScTy scala tympaniSim simple lobuleSol nu of solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSph sphenoid nuStapM stapedius muscleSuVe superior vestibular nutrs transverse sinusty9 tympanic branch of 9nVCA ventral cochlear nu, ant VCP vent cochlear nu, posterior VLPAG ventlat periaqueductal gray
ADMB Book #2 24/8/06 10:45 PM Page CCVII
ADMB Book #2 24/8/06 10:45 PM Page CCVIII
Gi
LPGiGiV
RMgpyRPa
bas
CtdB
ictd
ectd
StM
11n
I9Gn
occ
ty9
Rc
Rc
StapM
7n
CGn
8cn
TempP HSCC
ELS
Utr
tz
C1
7N
7SH
PCRt Sp5I
VCP
IRtDPGi
Pr SolIS
5Sol
X
GrC
PFlCvLR4V
MVeMC
LVe
SpVe
icpMVePC
4V
SuVe
mcp
scp
HemSim trs
ParP
EGLSag
CnF
LPB
MPB
Me5
LDTg
Sph
ne
Aq
DTg PFl
Fl
plf
ASCC
CIC
ECIC
DCICSC
Com
DMPAGDLPAG
LPAG
VLPAG
sp5
ne
Figure 92P0 #51
6.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans7N facial nu7n facial nerve7SH facial motor nu, stylohyoid8cn cochlear root 8th nerve11n root of accessory nerve Aq aqueductASCC anterior semicirc canalbas basilar arteryC1 C1 adrenaline cellsCGn cochlear (spiral) ganglionCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusCtdB carotid bodyDCIC dors cx inf colliculusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDPGi dors paragigantocellular nuDTg dorsal tegmental nuECIC external cx inferior collectd external carotid arteryEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuGiV gigantocellular retic, ventGrC granule cell, cochlear nuHem hemisphere of cerebellumHSCC horizontal semicircular canalI9Gn inferior ganglion 9nicp inf cerebellar peduncleictd internal carotid arteryIRt intermed reticular nuIS inferior salivatory nuLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular numcp middle cerebellar peduncleMe5 mesencephalic trigem nuMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulne neuroepitheliumocc occipital arteryParP parietal platePCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavityplf posterolateral fissurePr prepositus nupy pyramidal trRc Reichert’s cartilageRMg raphe magnus nuRPa raphe pallidus nuSag sagulum nuSC superior colliculusscp superior Cb peduncleSim simple lobuleSol nu of solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSph sphenoid nuSpVe spinal vestibular nuStapM stapedius muscleStM sternomastoid muscleSuVe superior vestibular nuTempP temporal bone, petroustrs transverse sinusty9 tympanic branch of 9ntz trapezoid bodyUtr utricleVCP vent cochlear nu, posterior VLPAG ventlat periaqueductal grayX nu X
ADMB Book #2 24/8/06 10:45 PM Page CCIX
ADMB Book #2 24/8/06 10:45 PM Page CCX
LPB
Com SC DCIC
ECICCIC
PAG
ne
2/3Cb
SimCnF
EGLParP
trsHem
LatInt
VeCbCG
MVePC
PrIS
MVeMCSpVe
LVeY
LatPC
GrC LR4V
Fl
plf
PFl ASCC
SolSolVL
5Sol
X
icpDC
DPGi
IRt
RObGi
GiVRPa py
bas
LPGiC1/RVL
Bo
AmbC
PCRt Sp5I
rs
ne
VCP
ELS
CCrus
HSCC
UtrCGn
PFlCv
BOcc
I9Gn 9n
S9GnJugF
ty99/10n
occStM
11n
HSCC
4V
Aq
Figure 93P0 #52
6.75 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2/3Cb 2nd/3rd cerebellarlobules4V 4th ventricle5Sol trigeminal-solitary trans9/10n glossopharyngeal & vagus9n glossopharyngeal nerve11n root of accessory nerve AmbC ambiguus nu, compact partAq aqueductASCC anterior semicirc canalbas basilar arteryBo Botzinger complexBOcc basioccipital boneC1/RVL C1/rostral ventlat retic nuCCrus common crus CG central grayCGn cochlear (spiral) ganglionCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusDC dorsal cochlear nuDCIC dors cx inf colliculusDPGi dors paragigantocellular nuECIC external cx inferior collEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuGiV gigantocellular retic, ventGrC granule cell, cochlear nuHem hemisphere of cerebellumHSCC horizontal semicircular canalI9Gn inferior ganglion 9nicp inf cerebellar peduncleInt interposed cerebellar nuIRt intermed reticular nuIS inferior salivatory nuJugF jugular foramenLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLPB lateral parabrachial nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulne neuroepitheliumocc occipital arteryPAG periaqueductal grayParP parietal platePCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavityplf posterolateral fissurePr prepositus nupy pyramidal trROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractS9Gn superior ganglion 9nSC superior colliculusSim simple lobuleSol nu of solitary tractSolVL nu sol tract, ventrolateralSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuStM sternomastoid muscletrs transverse sinusty9 tympanic branch of 9nUtr utricleVCP vent cochlear nu, posterior VeCb vestibulocerebellar nuX nu XY nu Y
ADMB Book #2 24/8/06 10:45 PM Page CCXI
ADMB Book #2 24/8/06 10:45 PM Page CCXII
4V
Com SC
ICPAG
Aq
ne CnF
EGL
SimHem
PFlplf ASCC
LatIntMed1Cb
4/5Cb EGL
LatPCA4
Y Fl
LR4V
ELS PFlCv
CCrusne
GrCSpVe
MVePC
MVeMC
Pr IS Sol
DPGiC2
mlfIRt PCRt
5Sol
Mx X
8n DCVCP
sp5
Sp5IAmbC
Bo
GiROb
GiVLPGi
C1/RVL
rs9/10/11n Utr
IOM
py
bas
RPaIOPr
BOcc
CtdB 9n12n
11n
I9Gn
I9Gn
JugFS9Gn
9/10/11n
ty9
StM
HSCC
Figure 94P0 #53
6.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cb 1st cerebellar lobule4/5Cb 4th/5th cerebellar lobules4V 4th ventricle5Sol trigeminal-solitary trans8n vestibulocochlear nerve9/10/11n 9n, 10n, and 11n9n glossopharyngeal nerve11n root of accessory nerve 12n root of hypoglossal nerveA4 A4 noradrenaline cellsAmbC ambiguus nu, compact partAq aqueductASCC anterior semicirc canalbas basilar arteryBo Botzinger complexBOcc basioccipital boneC1/RVL C1/rostral ventlat retic nuC2 C2 adrenaline cellsCCrus common crus CnF cuneiform nuCom commissural nu inf colliculusCtdB carotid bodyDC dorsal cochlear nuDPGi dors paragigantocellular nuEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuGiV gigantocellular retic, ventGrC granule cell, cochlear nuHem hemisphere of cerebellumHSCC horizontal semicircular canalI9Gn inferior ganglion 9nIC inferior colliculusInt interposed cerebellar nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuIS inferior salivatory nuJugF jugular foramenLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMed medial cerebellar numlf med longitudinal fasciculusMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulMx matrix region medullane neuroepitheliumPAG periaqueductal grayPCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavityplf posterolateral fissurePr prepositus nupy pyramidal trROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractS9Gn superior ganglion 9nSC superior colliculusSim simple lobuleSol nu of solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuStM sternomastoid musclety9 tympanic branch of 9nUtr utricleVCP vent cochlear nu, posterior X nu XY nu Y
ADMB Book #2 24/8/06 10:45 PM Page CCXIII
ADMB Book #2 24/8/06 10:45 PM Page CCXIV
HSCC
Com SC
ICPAG
ne
6Cb
Sim
Hem
EGL
ParP
PFl
plf
Fl
LatIntMed
1Cb
ASCC
PFlCvELSDC
MVe
PrSpVe
10NIn
12N
RoIRt
Sol
FVeX
Mx5Sol
PCRtLi
sp5
Sp5IAmbC
PrBo
C1/CVL
rsLPGi
GiROb
GiV
IOMpy
RPabasIOPr
IOD
BOcc
JugF
HSCC
S9Gn 9/10/11n
9n
StM
MasM
PSCC
HSCC
occ
sol
4V
LR4V
icp
Aq
Figure 95P0 #54
6.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cb 1st cerebellar lobule4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule9/10/11n 9n, 10n, and 11n9n glossopharyngeal nerve10N dorsal motor nu of vagus12N hypoglossal nuAmbC ambiguus nu, compact partAq aqueductASCC anterior semicirc canalbas basilar arteryBOcc basioccipital boneC1/CVL C1/caudoventrolat reticCom commissural nu inf colliculusDC dorsal cochlear nuEGL external granular layer CbELS endolymphatic sacFl flocculusFVe F cell group vestibGi gigantocellular reticular nuGiV gigantocellular retic, ventHem hemisphere of cerebellumHSCC horizontal semicircular canalIC inferior colliculusicp inf cerebellar peduncleIn intercalated nu medullaInt interposed cerebellar nuIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuJugF jugular foramenLat lateral (dentate) Cb nuLi linear nu of the medullaLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMasM masseter muscleMed medial cerebellar nuMVe medial vestibular nuMx matrix region medullane neuroepitheliumocc occipital arteryPAG periaqueductal grayParP parietal platePCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavityplf posterolateral fissurePr prepositus nuPrBo pre-Botzinger complexPSCC post semicircular canalpy pyramidal trRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractS9Gn superior ganglion 9nSC superior colliculusSim simple lobuleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuStM sternomastoid muscleX nu X
ADMB Book #2 25/8/06 12:04 AM Page CCXV
ADMB Book #2 24/8/06 10:45 PM Page CCXVI
PFlCV
PSCC
ELS
SC
PAGIC
Sim
6Cb
Med
plf10Cb
EGLHem
pfs
PFl
plf
Fl
LatInt
SpVeMVeZ
Pr10N
In
Sol
5Sol
X icp
sp5
Sp5C
Sp5IPCRtIRt
LiGi
12N
Ro
ROb
IOM IOD
IOPrpy
IOMbas
RPa
BOcc
CVL/C1
PrBo
AmbC
12n
12C
S9Gn
9/10/11nijugv
JugF
PSCC
HSCC
MasMocc
StM
DC
ne
Aq
4VLR4V
sol
LPGi
Figure 96P0 #55
7.11 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule9/10/11n 9n, 10n, and 11n10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12C hypoglossal canal12N hypoglossal nu12n root of hypoglossal nerveAmbC ambiguus nu, compact partAq aqueductbas basilar arteryBOcc basioccipital boneCVL/C1 caudoventrolat retic/C1DC dorsal cochlear nuEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuHem hemisphere of cerebellumHSCC horizontal semicircular canalIC inferior colliculusicp inf cerebellar peduncleijugv internal jugular veinIn intercalated nu medullaInt interposed cerebellar nuIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuJugF jugular foramenLat lateral (dentate) Cb nuLi linear nu of the medullaLPGi lat paragigantocell retLR4V lat recess 4th ventricleMasM masseter muscleMed medial cerebellar nuMVe medial vestibular nune neuroepitheliumocc occipital arteryPAG periaqueductal grayPCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavitypfs parafloccular sulcusplf posterolateral fissurePr prepositus nuPrBo pre-Botzinger complexPSCC post semicircular canalpy pyramidal trRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nuS9Gn superior ganglion 9nSC superior colliculusSim simple lobuleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuStM sternomastoid muscleX nu XZ nu Z
ADMB Book #2 24/8/06 10:45 PM Page CCXVII
ADMB Book #2 24/8/06 10:45 PM Page CCXVIII
PSCC
ELS
SC
PAG IC
ne
6Cb
SimEGL
ParPHem
pfs
trsPFl
plf
Fl
LatIntMed
9Cb
10Cb
MVeSpVe ECu
icpMxSol
sol10N
12N
Ro
RObGi
IRtPCRt
5Sol
Sp5I
sp5
Sp5CAmbSC
RVRGLRt
IOD
IOM
bas
RPaLPGi
C1/A1
IOPr12n
12C
12n
9/10/11nrs
S9Gnijugv
JugF
PSCC
Occ
occ
StM
11n
BOcc
LRtPC
LR4V
4V
Aq
Figure 97P0 #56
7.23 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule9/10/11n 9n, 10n, and 11n9Cb 9th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus11n root of accessory nerve 12C hypoglossal canal12N hypoglossal nu12n root of hypoglossal nerveAmbSC ambiguus nu, subcompactAq aqueductbas basilar arteryBOcc basioccipital boneC1/A1 adren/ noradrenaline cellsECu external cuneate nuEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuHem hemisphere of cerebellumIC inferior colliculusicp inf cerebellar peduncleijugv internal jugular veinInt interposed cerebellar nuIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuJugF jugular foramenLat lateral (dentate) Cb nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLRt lateral reticular nuLRtPC lat reticular nu, parvicellularMed medial cerebellar nuMVe medial vestibular nuMx matrix region medullane neuroepitheliumOcc occipital boneocc occipital arteryPAG periaqueductal grayParP parietal platePCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePSCC post semicircular canalRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVRG rost vent respiratoryS9Gn superior ganglion 9nSC superior colliculusSim simple lobuleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuStM sternomastoid muscletrs transverse sinus
ADMB Book #2 24/8/06 10:45 PM Page CCXIX
ADMB Book #2 24/8/06 10:45 PM Page CCXX
Med
ne6Cb
Sim
SC
IC
Hem
EGL
pfs
IntPFl
ELSFl
10Cb
MVeGr SpVe
ECuMx
PSolSol
sol
10N
12N
RoGi
IRt PCRt
5Sol
Sp5I
icp
Pa5
sp5Sp5C
AmbL
RVRG
LRt LRtPC
C1/A1
ROb
IOM
IOM IOPrIOD
12n
9/10/11n
12C12n
bas
RPa
Occ
Atlas
LR4V4V
Figure 98P0 #57
7.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule9/10/11n 9n, 10n, and 11n10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12C hypoglossal canal12N hypoglossal nu12n root of hypoglossal nerveAmbL ambiguus nu, loose partAtlas atlasbas basilar arteryC1/A1 adren/ noradrenaline cellsECu external cuneate nuEGL external granular layer CbELS endolymphatic sacFl flocculusGi gigantocellular reticular nuGr gracile nuHem hemisphere of cerebellumIC inferior colliculusicp inf cerebellar peduncleInt interposed cerebellar nuIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuLR4V lat recess 4th ventricleLRt lateral reticular nuLRtPC lat reticular nu, parvicellularMed medial cerebellar nuMVe medial vestibular nuMx matrix region medullane neuroepitheliumOcc occipital bonePa5 paratrigeminal nuPCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusPSol parasolitary nuRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nuRVRG rost vent respiratorySC superior colliculusSim simple lobuleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarSpVe spinal vestibular nu
ADMB Book #2 24/8/06 10:45 PM Page CCXXI
ADMB Book #2 24/8/06 10:45 PM Page CCXXII
Figure 99P0 #58
7.47 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Sp5C
occs
Med
IC
6CbSim
Hem
EGLpfs
PFl
ELS
PSCC
sig
icp
ECuCu
10Cb
4VMVe
Gr
PSolSol
sol
10N
12NCeC
IRt
PCRt
AmbLRVRG
Gi
LRtLRtPCIOD
IOK
IOCIOB IOA
pybas
IOBe
12n
rs
sp5
PtdOcc
Atlas
Axis
Mx5Sol
Sp5I
ROb
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveAmbL ambiguus nu, loose partAtlas atlasAxis axis (C2 vertebra)bas basilar arteryCeC central amyg nu, capsularCu cuneate nuECu external cuneate nuEGL external granular layer CbELS endolymphatic sacGi gigantocellular reticular nuGr gracile nuHem hemisphere of cerebellumIC inferior colliculusicp inf cerebellar peduncleIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOD inf olive, dorsal nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularMed medial cerebellar nuMVe medial vestibular nuMx matrix region medullaOcc occipital boneoccs occipital sinusPCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusPSCC post semicircular canalPSol parasolitary nuPtd parotid glandpy pyramidal trROb raphe obscurus nurs rubrospinal tractRVRG rost vent respiratorysig sigmoid sinusSim simple lobuleSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolar
ADMB Book #2 24/8/06 10:45 PM Page CCXXIII
ADMB Book #2 24/8/06 10:46 PM Page CCXXIV
MdD
IC
6Cbpms
Crus1
EGL
Hem
pfs
PFl
occs
10Cb
4V Gr CuECu
PSolsol
10N
Sol
CuR
cu
Mx
5Sol
Sp5I
Pa5
sp5
Sp5CIRt
MdV
12N
ROb
IOKIOD
IOBe
IOC IOB IOApy
vertRPa
LRt
RAmb
RVRG
C1/A1
PrLSp
Occ
12n
DAx
Axis
Atlas
Ptd
TempP
Figure 100P0 #59
7.59 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveAtlas atlasAxis axis (C2 vertebra)C1/A1 adren/ noradrenaline cellsCrus1 crus 1 ansiform lobuleCu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partDAx dens of the axisECu external cuneate nuEGL external granular layer CbGr gracile nuHem hemisphere of cerebellumIC inferior colliculusIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOD inf olive, dorsal nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventMx matrix region medullaOcc occipital boneoccs occipital sinusPa5 paratrigeminal nuPFl paraflocculuspfs parafloccular sulcuspms paramedian sulcusPrLSp pre lateral spinalPSol parasolitary nuPtd parotid glandpy pyramidal trRAmb retroambiguus nuROb raphe obscurus nuRPa raphe pallidus nuRVRG rost vent respiratorySol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarTempP temporal bone, petrousvert vertebral art
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ADMB Book #2 24/8/06 10:46 PM Page CCXXVI
MdD
Sp5C
IRt
A1
LRt
MdV
12N
IOK
IOC IOBIOA 12n
mlxRAmb
IOBers
CeCv
10N
ccdsc
sp5
sol
SolCuR
Mx
APGr
Cu cuECu
9Cb
8Cb
10Cb
pfs
PFl
pms6Cb Crus1
IC
Hem
EGL
vert
py
Sp5I
Figure 101P0 #60
7.71 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
6Cb 6th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveA1 A1 noradrenaline cellsAP area postremacc corpus callosumCeCv central cervical nu Crus1 crus 1 ansiform lobuleCu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractECu external cuneate nuEGL external granular layer CbGr gracile nuHem hemisphere of cerebellumIC inferior colliculusIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventmlx med lemniscus decussationMx matrix region medullaPFl paraflocculuspfs parafloccular sulcuspms paramedian sulcuspy pyramidal trRAmb retroambiguus nurs rubrospinal tractSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarvert vertebral art
ADMB Book #2 24/8/06 10:46 PM Page CCXXVII
ADMB Book #2 24/8/06 10:46 PM Page CCXXVIII
MdD Sp5C
Solsol
CuRMx
CuGrMnA
10N
12N IRt
IC
6Cb
7Cb
8Cb
9Cb10Cb
PFl
Cop
PMCrus2
EGL
sp5
dsc
rs
RAmbA1
LRt
MdV
11N
IOBpyx
vert
cu
Figure 102P0 #61
7.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
6Cb 6th cerebellar lobule7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus11N accessory nerve nu12N hypoglossal nuA1 A1 noradrenaline cellsCop copula pyramisCrus2 crus 2 ansiform lobuleCu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractEGL external granular layer CbGr gracile nuIC inferior colliculusIOB inf olive, subnu B med nuIRt intermed reticular nuLRt lateral reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventMnA median access nu medullaMx matrix region medullaPFl paraflocculusPM paramedian lobulepyx pyramidal decussationRAmb retroambiguus nurs rubrospinal tractSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalvert vertebral art
ADMB Book #2 24/8/06 10:46 PM Page CCXXIX
ADMB Book #2 24/8/06 10:46 PM Page CCXXX
Cu
Crus27Cb
8Cb Cop
PM
EGL
cugrGr
MxCuR Mx
Sp5CMdD
solSol
10N
CeCv
MdV
IRt
A1 rs
sp5
dsc
pyx
11N
SSpvmnf
Atlas
AtAx
Figure 103P0 #62
7.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule10N dorsal motor nu of vagus11N accessory nerve nuA1 A1 noradrenaline cellsAtAx atlantoaxial jointAtlas atlasCeCv central cervical nu Cop copula pyramisCrus2 crus 2 ansiform lobuleCu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractEGL external granular layer CbGr gracile nugr gracile fasciculusIRt intermed reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventMx matrix region medullaPM paramedian lobulepyx pyramidal decussationrs rubrospinal tractSol nu of solitary tractsol solitary tractsp5 spinal trigem tractSp5C spinal trigem nu, caudalSSp supraspinal nucleusvmnf ventral median fissure
ADMB Book #2 24/8/06 10:46 PM Page CCXXXI
ADMB Book #2 24/8/06 10:46 PM Page CCXXXII
GrO
EPl
Gl
1n
MiA
IPL
neOV
ON
CrP
EthB
EthB
NasCNSpt
MxB
NasC
EnO
MRecHardG
SOb
Mi
EPl
Fro
SuspLig
OFRGn
InPl
Vent
Pig
MxB
5mx
ne
Figure 104P6 #1
0.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionCrP cribriform plate ethmoidEnO enamel organEPl ext plexiform layer olf bulbEthB ethmoid boneFro frontal boneGl glomerular layer olf bulbGrO granular cell layer olf bulbHardG Harderian glandInPl inner plexiform layer IPL interpedunc nu, lat subnuMi mitral cell layer olf bulbMiA mitral cell layer acc olf bulbMRec medial rectus muscleMxB maxillary boneNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ON olfactory nerve layerOV olfactory ventriclePig pigment layer of the eyeRGn ganglion cell layer SOb superior oblique muscleSuspLig suspensory ligamentVent ventricular space eye
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ADMB Book #2 24/8/06 10:46 PM Page CCXXXIV
GrO
vn
MiA
LO
VO
ON
1n
NSpt
Gl
EPl
MiAOE
AOLAOD
neOV
AOV
aci
lo
Fro
Lens NasCEthB
FrA
MO
dlo
ne
Pig
Vent
SuspLig
CorneaOF
RGn
InPl
HardG
5mx
Figure 105P6 #2
1.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1n olfactory nerve5mx 5n, maxillary divisionaci ant commiss, intrabulbarAOD ant olfactory nu, dorsAOE ant olfactory nu, extAOL ant olfactory nu, latAOV ant olfactory nu, ventralCornea corneadlo dorsal lat olfactory tractEPl ext plexiform layer olf bulbEthB ethmoid boneFrA frontal assocn cortexFro frontal boneGl glomerular layer olf bulbGrO granular cell layer olf bulbHardG Harderian glandInPl inner plexiform layer Lens lensLO lateral orbital cxlo lateral olfactory tractMi mitral cell layer olf bulbMiA mitral cell layer acc olf bulbMO medial orbital cxNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer ON olfactory nerve layerOV olfactory ventriclePig pigment layer of the eyeRGn ganglion cell layer SuspLig suspensory ligamentVent ventricular space eyevn vomeronasal nVO ventral orbital cx
ADMB Book #2 24/8/06 10:46 PM Page CCXXXV
ADMB Book #2 24/8/06 10:46 PM Page CCXXXVI
FrA
PrL
MOVO
LO
DLO
AOD
AOLAOM
aci
neOV
GrO
AOV
AOEON
GlIPl
Mi
EPl
Figure 106P6 #3
1.71 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
aci ant commiss, intrabulbarAOD ant olfactory nu, dorsAOE ant olfactory nu, extAOL ant olfactory nu, latAOM ant olfactory nu, medialAOV ant olfactory nu, ventralDLO dorsolat orbital cortexEPl ext plexiform layer olf bulbFrA frontal assocn cortexGl glomerular layer olf bulbGrO granular cell layer olf bulbIPl IP layer olf bulbLO lateral orbital cxMi mitral cell layer olf bulbMO medial orbital cxne neuroepitheliumON olfactory nerve layerOV olfactory ventriclePrL prelimbic cxVO ventral orbital cx
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ADMB Book #2 24/8/06 10:46 PM Page CCXXXVIII
M2
PrL
MO
VOLO
AIV
AID
Fr3
M1
AOL
AODDTT
AOM
AOV
DEn
aci ne OV
GrO Gl
EPllo
Figure 107P6 #4
1.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
aci ant commiss, intrabulbarAID agranular insular cx, dorsalAIV agranular insular cx, ventAOD ant olfactory nu, dorsAOL ant olfactory nu, latAOM ant olfactory nu, medialAOV ant olfactory nu, ventralDEn dorsal endopiriform nuDTT dorsal tenia tectaEPl ext plexiform layer olf bulbFr3 frontal cx, area 3Gl glomerular layer olf bulbGrO granular cell layer olf bulbLO lateral orbital cxlo lateral olfactory tractM1 primary motor cxM2 secondary motor cxMO medial orbital cxne neuroepitheliumOV olfactory ventriclePrL prelimbic cxVO ventral orbital cx
ADMB Book #2 24/8/06 10:46 PM Page CCXXXIX
ADMB Book #2 24/8/06 10:46 PM Page CCXL
M1
Fr3
AIDFro
AIV
LO
VO
MO
PrL
Cg1M2
DTT
AOVP
DTr
DEn
IEn ne OV
VTT
Pir12
3
Lens
MRec 5mx
MidM EthB
NasC
NSpt
NasC
ne
rf
SRec
2n
a
lo
Pig
Vent
InPl
OF
RGn
LPSEthB
Figure 108P6 #5
1.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisiona arteryAID agranular insular cx, dorsalAIV agranular insular cx, ventAOVP ant olfactory, ventropostCg1 cingulate cortex, area 1DEn dorsal endopiriform nuDTr dorsal transition zoneDTT dorsal tenia tectaEthB ethmoid boneFr3 frontal cx, area 3Fro frontal boneIEn intermed endopiriform nuInPl inner plexiform layer Lens lensLO lateral orbital cxlo lateral olfactory tractLPS levator palpebraeM1 primary motor cxM2 secondary motor cxMidM middle meatusMO medial orbital cxMRec medial rectus muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer OV olfactory ventriclePig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxrf rhinal fissureRGn ganglion cell layer SRec superior rectus muscleVent ventricular space eyeVO ventral orbital cxVTT ventral tenia tecta
ADMB Book #2 24/8/06 10:46 PM Page CCXLI
ADMB Book #2 24/8/06 10:46 PM Page CCXLII
M2
M1
Cg1
PrL
IL
DP
DTT
AOVP
AOP
neOV
acaIEn
DEn
DTrLO
AIV
AID
DI
S1J
Fr3
Fro
Cl
VO
lo
Pir12
3
PSphW
LPS
ne
SRec
2n
Lens
OF
RGn
InPl
SOb
Vent
VTT1
23
Pig
Figure 109P6 #6
2.07 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antAID agranular insular cx, dorsalAIV agranular insular cx, ventAOP ant olfactory nu, postAOVP ant olfactory, ventropostCg1 cingulate cortex, area 1Cl claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTr dorsal transition zoneDTT dorsal tenia tectaFr3 frontal cx, area 3Fro frontal boneIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer Lens lensLO lateral orbital cxlo lateral olfactory tractLPS levator palpebraeM1 primary motor cxM2 secondary motor cxne neuroepitheliumOF optic fiber layer OV olfactory ventriclePig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxPSphW presphenoid wingRGn ganglion cell layer S1J prim somatosens, jaw SOb superior oblique muscleSRec superior rectus muscleVent ventricular space eyeVO ventral orbital cxVTT1 vent tenia tecta, layer 1
ADMB Book #2 24/8/06 11:22 PM Page CCXLIII
ADMB Book #2 24/8/06 11:22 PM Page CCXLIV
M1
Fr3
S1J
GI
DI
AID
AIVLO
VCl
fmi
PrL
Cg1
M2
IL
DP
DTT1234
AOVP
AOP
OVne
DEnaca
AcbSh
DCl
IEn
Pir12
3
LPS
lo
ne
SRecMidM
NSpt
NasCSphPalEnO
2n
5mx
cavMRec
HardG
OF
InPl
RGn
Pig
Vent
rf
Fro
VTT23
1
Figure 110P6 #7
2.19 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1 layer 1 of cortex2 layer 2 of cortex2n optic nerve3 layer 3 of cortex4 layer 4 of cortex5mx 5n, maxillary divisionaca anterior commissure, antAcbSh accumbens nu, shellAID agranular insular cx, dorsAIV agranular insular cx, ventAOP ant olfactory nu, postAOVP ant olfactory, ventropostcav cavernous sinusCg1 cingulate cortex, area 1DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectaEnO enamel organfmi forceps min corpus callFr3 frontal cx, area 3Fro frontal boneGI granular insular cxHardG Harderian glandIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer LO lateral orbital cxlo lateral olfactory tractLPS levator palpebraeM1 primary motor cxM2 secondary motor cxMidM middle meatusMRec medial rectus muscleNasC nasal cavityne neuroepitheliumNSpt nasal septumOF optic fiber layer OV olfactory ventriclePig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxrf rhinal fissureRGn ganglion cell layer S1J prim somatosens, jaw SphPal sphenopalatine ganglionSRec superior rectus muscleVCl vent part claustrumVent ventricular space eyeVTT ventral tenia tecta
ADMB Book #2 24/8/06 11:22 PM Page CCXLV
ADMB Book #2 24/8/06 11:22 PM Page CCXLVI
M1
M2
Cg1
PrL
IL
DP
DTT
Nv
TuICjICj
AOP
AcbSh
OV
ne
CPu
fmi
VCl
DClGI
DI
S1J
Fr3
AIDAIV
DEnaca
IEn
Pir1 23
lo
Figure 111P6 #8
2.31 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex3 layer 3 of cortexaca anterior commissure, antAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventAOP ant olfactory nu, postCg1 cingulate cortex, area 1CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectafmi forceps min corpus callFr3 frontal cx, area 3GI granular insular cxICj islands of CallejaIEn intermed endopiriform nuIL infralimbic cortexlo lateral olfactory tractM1 primary motor cxM2 secondary motor cxne neuroepitheliumNv navicular nu basal forebrainOV olfactory ventriclePir1 piriform cx, layer 1PrL prelimbic cxrf rhinal fissureS1J prim somatosens, jaw Tu olfactory tubercleVCl vent part claustrum
ADMB Book #2 24/8/06 11:22 PM Page CCXLVII
ADMB Book #2 24/8/06 11:22 PM Page CCXLVIII
M1
M2
Cg1
PrL
IL
DP
DTT
LSI
ne
LVCPu
cg
fmi
GI
DI
AID
AIV
Fro
DCl
VCl
DEn
IEn
AOP
AcbCaca
AcbSh
VP
Nvazac
ICj
S1J
InPl
ne
Pig
SRec
lo
rf
Pir1
2
3
ICj
Tu12
3
mfb
OptF
2n
LRecMRecIRec
HardG5mx
ophv SphPal
NasC
PSph
Vent
SHi
Eye
dcw
Figure 112P6 #9
2.43 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisionaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventAOP ant olfactory nu, postazac azygous ant cerebral artcg cingulumCg1 cingulate cortex, area 1CPu caudate putamen (striatum)DCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectaEye eyefmi forceps min corpus callFro frontal boneGI granular insular cxHardG Harderian glandICj islands of CallejaIEn intermed endopiriform nuIL infralimbic cortexInPl inner plexiform layer IRec inferior rectus musclelo lateral olfactory tractLRec lat rectus muscleLSI lat septal nu, intermedLV lateral ventricleM1 primary motor cxM2 secondary motor cxmfb med forebrain bundleMRec medial rectus muscleNasC nasal cavityne neuroepitheliumNv navicular nu basal forebrainophv ophthalmic veinOptF optic foramenPig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxPSph presphenoid bonerf rhinal fissureS1J prim somatosens, jaw SHi septohippocampal nuSphPal sphenopalatine ganglionSRec superior rectus muscleTu1 olfactory tubercle, layer 1VCl vent part claustrumVent ventricular space eyeVP ventral pallidum
ADMB Book #2 24/8/06 11:22 PM Page CCXLIX
ADMB Book #2 24/8/06 11:23 PM Page CCL
S1FL
M1
M2
Cg1
PrL
IL
DP
DTT
SHiLSI
LSVLV
ne
fmi
cg
S1DZ
S1J
ec
S2Fro
G1
DI
AID
AIV
VCl
DCl
DEn
acaAcbC
CPu
IEn
Pir12
3rf
Pig
Vent
ne
AcbSh
ICjMNv
azacVPVP
Tu12
3
OptF
2n
HardG cav5mx
PSph
lo
Figure 113P6 #10
2.55 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisionaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventazac azygous ant cerebral artcav cavernous sinuscg cingulumCg1 cingulate cortex, area 1CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxDTT dorsal tenia tectaec external capsulefmi forceps min corpus callFro frontal boneGi gigantocell reticular nuHardG Harderian glandICjM islands of Calleja, major IEn intermed endopiriform nuIL infralimbic cortexlo lateral olfactory tractLSI lat septal nu, intermedLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxne neuroepitheliumNv navicular nu basal forebrainOptF optic foramenPig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxPSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw S2 2ary somatosensory cxSHi septohippocampal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumVent ventricular space eyeVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLI
ADMB Book #2 24/8/06 11:23 PM Page CCLII
S1FL
M1
M2
Cg1
S1DZ
S1J
S2
GI
DI
AID
AIV
VCl
DCl
DEn
CPu
ne
ec
cg
fmi
DP
IL
PrL
IG
SHiLSD
LV
LSILSV
MS
VDBAcbSh
acaAcbCaca
IEn
Pir1
2
3rf
lo
Pig
VP VPTu1 2
3
ICj
OptF
2n
cavHardG
PSph
azacICj
ICj
Figure 114P6 #11
2.67 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellAID agranular insular cx, dorsalAIV agranular insular cx, ventazac azygous ant cerebral artcav cavernous sinuscg cingulumCg1 cingulate cortex, area 1CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxec external capsulefmi forceps min corpus callGI granular insular cxHardG Harderian glandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIL infralimbic cortexlo lateral olfactory tractLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMS medial septal nune neuroepitheliumOptF optic foramenPig pigment layer of the eyePir1 piriform cx, layer 1PrL prelimbic cxPSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw S2 2ary somatosensory cxSHi septohippocampal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLIII
ADMB Book #2 24/8/06 11:23 PM Page CCLIV
S1FL
S1DZ
S1J
S2
GI
DI
AID
AIV
VCl
DEn
DCl
CPu
ne
LV
LSD
M1
M2
Cg1
Cg2cg
IG
cc
DP
SHi
LSILSV
acaaca
AcbC
IEn
ec
rf
Pir1
2
3
loICj
ICj
VP
CB
2
Tu1
3
2n
OptF
cav
PSph
acerICj
VDB
MS
AcbShVP
ICj
Figure 115P6 #12
2.79 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventcav cavernous sinusCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxDP dorsal peduncular cxec external capsuleGI granular insular cxICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumlo lateral olfactory tractLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMS medial septal nune neuroepitheliumOptF optic foramenPir1 piriform cx, layer 1PSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw S2 2ary somatosensory cxSHi septohippocampal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLV
ADMB Book #2 24/8/06 11:23 PM Page CCLVI
CPu
S1FL
M1
M2
Cg1
Cg2
IG
cgS1DZ
S1J
ec
S2
GI
DIFro
AID
VCl
DCl
DEn
IEn
LSS
AcbC
acaaca
LSV
LSI
LSD
ne
LV
ne
cc
SHi
MS
VDB
ICjM
AcbShVP
SIB
Pir1
2
3rf
lo
Tu12
3ICj VP
mfbCB
ICj acer
2nOptF
cav
5mxEnO
PSphW
PSph
NasC
AIV
Figure 116P6 #13
2.91 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisionaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventcav cavernous sinusCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleEnO enamel organFro frontal boneGI granular insular cxICj islands of CallejaICjM islands of Calleja, major IEn intermed endopiriform nuIG indusium griseumlo lateral olfactory tractLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxmfb med forebrain bundleMS medial septal nuNasC nasal cavityne neuroepitheliumOptF optic foramenPir1 piriform cx, layer 1PSph presphenoid bonePSphW presphenoid wingrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1J prim somatosens, jaw S2 2ary somatosensory cxSHi septohippocampal nuSIB substantia innominata, basalTu1 olfactory tubercle, layer 1VCl vent part claustrumVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLVII
ADMB Book #2 24/8/06 11:23 PM Page CCLVIII
CPu
cc
cg
S1FL
S1DZ
S1J
S1DZO
M1M2
Cg1
Cg2
S1ULp
S2
GI
DI
AID
AIV
VCl
DCl
DEn
ne
LVne
LSD
IG
cc
LSI
Ld
MS
LSV
aca
AcbCIEn
rf
Pir12
3
lo
ICjM
AcbShSIB VDB
HDB
acer
2n
VP
CBmfb
ICj
LAcbSh
LSS
ICjTu1
23
cav
5mxEnO
aPSph
Figure 117P6 #14
3.03 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex5mx 5n, maxillary divisiona arteryaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventcav cavernous sinusCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxEnO enamel organGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaICjM islands of Calleja, major IEn intermed endopiriform nuIG indusium griseumLAcbSh lateral accumbens shellLd lambdoid septal zonelo lateral olfactory tractLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxmfb med forebrain bundleMS medial septal nune neuroepitheliumPir1 piriform cx, layer 1PSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1DZO prim somatosens, oral dysg S1FL prim somatosens, forelimbS1J prim somatosens, jaw S1ULp prim somatosens, upper lipS2 2ary somatosensory cxSIB substantia innominata, basalTu1 olfactory tubercle, layer 1VCl vent part claustrumVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLIX
ADMB Book #2 24/8/06 11:23 PM Page CCLX
CPu
ne
LV
LSD
S1FL
S1DZ
S1J
S1DZO
S1ULpec
S2
GI
DI
AID
AIV
VCl
DCl
DEn
M1
M2
Cg1
Cg2cg
IG
cc
LSI
LSV
MS
aca
AcbC AcbSh
VPVDB
SIB
HDBICj
mfb
IEn
Pir12
3
lo
rf
Tu123
LSS
ICj
2n
acer
PSph
VP
Figure 118P6 #15
3.15 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumlo lateral olfactory tractLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxmfb med forebrain bundleMS medial septal nune neuroepitheliumPir1 piriform cx, layer 1PSph presphenoid bonerf rhinal fissureS1DZ prim somatosens, dysgranul S1DZO prim somatosens, oral dysg S1FL prim somatosens, forelimbS1J prim somatosens, jaw S1ULp prim somatosens, upper lipS2 2ary somatosensory cxSIB substantia innominata, basalTu1 olfactory tubercle, layer 1VCl vent part claustrumVDB nu vertical limb diagonal bandVP ventral pallidum
ADMB Book #2 25/8/06 12:08 AM Page CCLXI
ADMB Book #2 24/8/06 11:23 PM Page CCLXII
S1J
S1DZ
S1FL
M1M2
Cg1
cg
S1DZO
S1ULp
ec
Cg2
IG
cc
LSD
ne
LV
LSI Ld
MSLSV
CPu
SHySTMA
aca
AcbCAcbSh
S2
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DI
AID
rf AIV
VCl
DCl
DEn
IEnLSS
CB
ICj
Tu12
3
ICj
2n
acer
HDBMCPO
SIB
VPLPO
VOLT
Pir1
2
3
lo
Figure 119P6 #16
3.27 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antAcbC accumbens nu, coreAcbSh accumbens nu, shellacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nuDI dysgranular insular cxec external capsuleGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumLd lambdoid septal zonelo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMCPO magnocell preoptic nuMS medial septal nune neuroepitheliumPir1 piriform cx, layer 1rf rhinal fissureS1DZ prim somatosens, dysgranul S1DZO prim somatosens, oral dysg S1FL prim somatosens, forelimbS1J prim somatosens, jaw S1ULp prim somatosens, upper lipS2 2ary somatosensory cxSHy septohypothalamic nuSIB substantia innominata, basalSTMA bed nu st, med div, ant Tu1 olfactory tubercle, layer 1VCl vent part claustrumVOLT vasc organ lam terVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXIII
ADMB Book #2 24/8/06 11:23 PM Page CCLXIV
S1FL
S1DZ
S1ULp ec
cg
M1M2
Cg1
Cg2
IG
cc
LSD
ne
ne
LV
LSI
df
fiSFi
S2
GI
DI
AID
AIVrf
VCl
DCl
DEn
CPu LSV
SHySTLD
STLP
STMA
aca
IPACVP
LPO
MS
IEn
Pir12
3
lo
VP
LSS
SIB
MCPO HDB MPA VOLT
MnPO
CB
ICj
Tu123
acer
2n
Figure 120P6 #17
3.39 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortexaca anterior commissure, antacer anterior cerebral artAID agranular insular cx, dorsalAIV agranular insular cx, ventCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxec external capsulefi fimbria hippocampusGI granular insular cxHDB nu horizlimb diagonal bandICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMCPO magnocell preoptic nuMnPO median preoptic nuMPA medial preoptic areaMS medial septal nune neuroepitheliumPir1 piriform cx, layer 1rf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalSTLD bed nu st, lat div, dorsal STLP bed nu st, lat div, posterior STMA bed nu st, med div, ant Tu1 olfactory tubercle, layer 1VCl vent part claustrumVOLT vasc organ lam terVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXV
ADMB Book #2 24/8/06 11:23 PM Page CCLXVI
S1FL
S1HLM1
M2
S1DZ
S1ULp
ec
S2
Cg1
Cg2
IG
cc
cg
ne
LVLSD
df
TS
f
SFifi
LSI
LSV
SHy
MnPOSTMAM
STMAL
stic
STLP
STLD
STLJacp
ac
GI
DI
AID
AIV
VCl
DEn
DCl
Pir12
3
rf
lo
Tu1 23
CPu
LSSIEn IPAC
VP
STLVSTI STMV SHy
PSFu
StA
Al MnPO
SIB
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LPO
MPA
VOLT
3V
acer
2n
4n3n 6n
5oph
5mxptgcnptgpal
ASph NasC
PSph
ICj
cav
Figure 121P6 #18
3.51 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex3n oculomotor nerve3V 3rd ventricle4n trochlear nerve5mx 5n, maxillary division5oph 5n, ophthalmic division6n root of abducens nerveac anterior commissureacer anterior cerebral artacp anterior comm, posteriorAID agranular insular cx, dorsalAIV agranular insular cx, ventAl alar nuASph alisphenoid bonecav cavernous sinuscc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxec external capsulef fornixfi fimbria hippocampusFu bed nu st, fusiformGI granular insular cxHDB nu horizlimb diagonal bandic internal capsuleICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLSV lat septal nu, vent partLV lateral ventricleM1 primary motor cxM2 secondary motor cxMCPO magnocell preoptic nuMnPO median preoptic nuMPA medial preoptic areaNasC nasal cavityne neuroepitheliumPir1 piriform cx, layer 1PS parastrial nuPSph presphenoid boneptgcn nerve of the pterygoid canalptgpal pterygopalatine nrf rhinal fissureS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalst stria terminalisStA strial part preoptic areaSTI ST, intermediate divSTLD bed nu st, lat div, dorsal STLJ bed nu st, lat div, juxtacapSTLP bed nu st, lat div, posterior STLV bed nu st, lat div, ventral STMAL bed nu st, med div, ant lat STMAM bed nu st, med div, ant med STMV bed nu st, med div, ventral TS triangular septal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumVOLT vasc organ lam terVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXVII
ADMB Book #2 24/8/06 11:23 PM Page CCLXVIII
S1ULp
S1DZ
S1FL
S1HL
M1M2
Cg1
Cg2
IG
cg
ccne
LSDLVne
LSI df
SFi
fi
TS
vhc
LTer
f
STD
ic
CPu
SHyst
STMAM
STMAL
ec
S2
GI
DIDCl
AIP VCl
STLPSTLI BAC
ac
STI
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SHySTMV
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lo
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3
MCPO
CB
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SIB LPO
PS
MPA
MPOL Pe
MnPO
3V
VOLT
VMPO
VLPOHDB
acer
2n
IPAC
Figure 122P6 #19
3.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex3V 3rd ventricleac anterior commissureacer anterior cerebral artacp anterior comm, posteriorAIP agranular insular cx, postBAC bed nu ant commissureCB cell bridges vent striatumcc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxec external capsulef fornixfi fimbria hippocampusFu bed nu st, fusiformGI granular insular cxHDB nu horizlimb diagonal bandic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSI lat septal nu, intermedLSS lat stripe striatumLTer lemina terminalisLV lateral ventricleM1 primary motor cxM2 secondary motor cxMCPO magnocell preoptic nuMnPO median preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralne neuroepitheliumPe periventricular hypothal nuPir1 piriform cx, layer 1PS parastrial nuS1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSHy septohypothalamic nuSIB substantia innominata, basalst stria terminalisStA strial part preoptic areaSTD bed nu st, dorsal partSTI ST, intermediate divSTLI bed nu st, lat div, intermedSTLJ bed nu st, lat div, juxtacapSTLP bed nu st, lat div, posterior STLV bed nu st, lat div, ventral STMAL bed nu st, med div, ant lat STMAM bed nu st, med div, ant med STMV bed nu st, med div, ventral TS triangular septal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVOLT vasc organ lam terVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXIX
ADMB Book #2 24/8/06 11:23 PM Page CCLXX
S1FL
S1HL
M1
S1DZ
S1BF
S1ULp
S2
ec
GI
DI DCl
CPu
ne
ne
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ne
M2
Cg1
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cc
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vhc
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f
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lo
mcer
Tu1 2 3
Pir12
3
MCPO
HDB
SIB
acer 2n
VLPO
MPAMPOL
AVPe
VMPO
3V
Pe
Figure 123P6 #20
3.75 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex3V 3rd ventricleac anterior commissureacer anterior cerebral artacp anterior comm, posteriorAIP agranular insular cx, postAV anteroventral thalamic nuAVPe ant ventral periventric nuBAC bed nu ant commissurecc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxec external capsulef fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb acIVF interventricular foramenlo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSS lat stripe striatumLTer lemina terminalisLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralne neuroepitheliumPDPO posterodorsal preoptic nuPe periventricular hypothal nuPir1 piriform cx, layer 1PT paratenial thalamic nuPVA paraventricular thal nu, antS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSFO subfornical organSHy septohypothalamic nuSIB substantia innominata, basalst stria terminalisStHy striohypothalamic nuSTLI bed nu st, lat div, intermedSTLP bed nu st, lat div, posterior STLV bed nu st, lat div, ventral STMP bed nu st, med div, post STMPI bed nu st, med div, postint STMPL bed nu st, med div, post lat STMPM bed nu st, med div, post medTS triangular septal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXXI
ADMB Book #2 24/8/06 11:23 PM Page CCLXXII
S1BF
S1DZS1FL
S1HL
M1M2
Cg1
Cg2
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cg
dcw
ecS1ULp
S2
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fi
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sm
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VLPO
MPOL
MPOM
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2n
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3V
PaAP
3VPe
Figure 124P6 #21
3.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex2n optic nerve3 layer 3 of cortex3V 3rd ventricleAA anterior amyg areaacer anterior cerebral artacp anterior comm, posteriorAD anterodorsal thalamic nuAIP agranular insular cx, postAV anteroventral thalamic nuB basal nu (Meynert)cc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CPu caudate putamen (striatum)DCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxEAC sublent extend amyg, centec external capsulef fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandic internal capsuleICj islands of CallejaIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLSD lat septal nu, dorsal partLSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMPA medial preoptic areaMPOC medial preoptic nu, centralMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialne neuroepitheliumns nigrostriatal bundlePaAP paraventric hy, ant parvicellPDPO posterodorsal preoptic nuPe periventricular hypothal nuPir1 piriform cx, layer 1PT paratenial thalamic nuPVA paraventricular thal nu, antRe reuniens thalamic nuRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSFO subfornical organSIB substantia innominata, basalsm stria medullaris thalst stria terminalisStHy striohypothalamic nuSTLP bed nu st, lat div, posterior STMPI bed nu st, med div, postint STMPL bed nu st, med div, post lat STMPM bed nu st, med div, post medTS triangular septal nuTu1 olfactory tubercle, layer 1VCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidum
ADMB Book #2 24/8/06 11:23 PM Page CCLXXIII
ADMB Book #2 24/8/06 11:24 PM Page CCLXXIV
S1BF
S1FL
S1DZ
S1HL
M1 M2
Cg1
Cg2cg
dcw
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df
cc
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f
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StHy
3VPe
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MPOL
VMPO
ochVLPOacer
AAACo
Tulo
mcer
Figure 125P6 #22
3.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2 layer 2 of cortex3 layer 3 of cortex3V 3rd ventricleAA anterior amyg areaacer anterior cerebral artACo ant cortical amygdaloid nuacp anterior comm, posteriorAD anterodorsal thalamic nuAIP agranular insular cx, postAM anteromedial thalamic nuAV anteroventral thalamic nuB basal nu (Meynert)cc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CM central medial thal nuCPu caudate putamen (striatum)DCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudf dorsal fornixDI dysgranular insular cxEAC sublent extend amyg, centec external capsulef fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusHDB nu horizlimb diagonal bandic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb aclo lateral olfactory tractLPO lat preoptic areaLSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialne neuroepitheliumoch optic chiasmPaAP paraventric hy, ant parvicellPe periventricular hypothal nuPir1 piriform cx, layer 1PT paratenial thalamic nuPVA paraventricular thal nu, antRe reuniens thalamic nurf rhinal fissureRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSFi septofimbrial nuSFO subfornical organSIB substantia innominata, basalsm stria medullaris thalst stria terminalisStHy striohypothalamic nuSTMP bed nu st, med div, post TS triangular septal nuTu olfactory tubercleVCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumVRe vent reuniens thalamic nu
ADMB Book #2 24/8/06 11:24 PM Page CCLXXV
ADMB Book #2 24/8/06 11:24 PM Page CCLXXVI
CPu
GP
B
ic
Rt
st
LDVL
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AD
AVDM
AVVL
eml
AM
PTIAD
smMHb
S2
GI
DI
AIP
VCl
DCl
DEn
ecS1ULp
S1BF
S1DZ
S1FL
S1HL
M1M2
Cg1
Cg2cg
dcw
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IG
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SLu
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LV
ne
fi
RtSt
vhc
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PVA
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GrDG
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3
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f
sm
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rf
MD
Pir1 2 3
Figure 126P6 #23
4.11 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricleAA anterior amyg areaacer anterior cerebral artACo ant cortical amygdaloid nuacp anterior comm, posteriorAD anterodorsal thalamic nuAIP agranular insular cx, postAM anteromedial thalamic nuAVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)CA3 field CA3 hippocampuscc corpus callosumcg cingulumCg1 cingulate cortex, area 1Cg2 cingulate cortex, area 2CM central medial thal nuCPu caudate putamen (striatum)CxA1 cortex-amyg trans, lr 1D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nuDI dysgranular insular cxEAC sublent extend amyg, centec external capsuleeml external medullary laminaf fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrusHDB nu horizlimb diagonal bandIAD interanterodorsal thal nuic internal capsuleIEn intermed endopiriform nuIG indusium griseumIPAC interst nu post limb acLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLPO lat preoptic areaLSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMD mediodorsal thalamic nuMHb med habenular nuMoDG molecular dentate gyrusMPA medial preoptic areaMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialne neuroepitheliumoch optic chiasmPaAP paraventric hy, ant parvicellPaXi paraxiphoid nu of thalamusPe periventricular hypothal nuPir1 piriform cx, layer 1PT paratenial thalamic nuPVA paraventricular thal nu, antPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nurf rhinal fissureRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1FL prim somatosens, forelimbS1HL prim somatosens, hindlimbS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSCh suprachiasmatic nuSFO subfornical organSIB substantia innominata, basalSLu stratum lucidum hippocampSM nu stria medullarissm stria medullaris thalst stria terminalisStHy striohypothalamic nuSTMP bed nu st, med div, post VCl vent part claustrumvhc ventral hippocamp commVLPO ventlat preoptic nuVMPO ventmed preoptic nuVP ventral pallidumVRe vent reuniens thalamic nuXi xiphoid thal nu
ADMB Book #2 24/8/06 11:24 PM Page CCLXXVII
ADMB Book #2 24/8/06 11:24 PM Page CCLXXVIII
Rad
S1Sh
S1DZ
S1BF
S1ULp
ec
dcw
cg
RSGc
IG
S1HL
M1M2
RSD
SLuCA3
PyOr
alv
neLV
fi
LDVLLDDM
AD
AVDM
AVVL
Rt
st
ic
ic
GP
CPuAM
AMV
PT
PVA
D3V
dhc
cc
MHbsm
LHb
MDPC
CLmt CM
IAD
Rh
ReVRe
RtSt
GrDG
MoDG
S2
GI
DI
AIPVCl
DCl
DEn
rf LSSIPAC
B
EAC
VP
MCPOVEn
acp
Pir1 2 3
3AA
HDB
ACo 2
LOT1
mceracer
SO
ESO
VLH
PLHSIB
sm
SM
ZIR
ANS
f
STMP
AHA
MPOL
MPOM
LASCh
ochSChVM
Pe
3V
SPaPaV
PaMM PaXi
Xi
PaMPBCo
Figure 127P6 #24
4.23 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricleAA anterior amyg areaacer anterior cerebral artACo ant cortical amygdaloid nuacp anterior comm, posteriorAD anterodorsal thalamic nuAHA anterior hypothal area, antAIP agranular insular cx, postalv alveus hippocampusAM anteromedial thalamic nuAMV anteromed thal nu, ventANS access neurosecretory nu AVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)BCo basal nu, corecc corpus callosumcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centec external capsuleESO episupraoptic nuf fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrusHDB nu horizlimb diagonal bandIAD interanterodorsal thal nuic internal capsuleIG indusium griseumIPAC interst nu post limb acLA lateroanterior hypothal nuLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHb lateral habenular nuLOT1 nu lat olf tract, layer 1LSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMD mediodorsal thalamic nuMHb med habenular nuMoDG molecular dentate gyrusMPOL medial preoptic nu, lateralMPOM medial preoptic nu, medialmt mammillothalamic tractne neuroepitheliumoch optic chiasmOr oriens layer hippocampusPaMM paravent hy, med magnocelPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPT paratenial thalamic nuPVA paraventricular thal nu, antPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1HL prim somatosens, hindlimbS1Sh prim somatosens, shoulderS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSCh suprachiasmatic nuSChVM suprachiasmatic, ventromedSIB substantia innominata, basalSLu stratum lucidum hippocampSM nu stria medullarissm stria medullaris thalSO supraoptic nu
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 11:24 PM Page CCLXXIX
ADMB Book #2 24/8/06 11:24 PM Page CCLXXX
Figure 128P6 #25
4.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
CPu
Rt
st
LDVLLDDM
sm
LHb
MD
PTPC
CL
AVDM
VL
AVVL
AM
VA
mt
AMV
hif
MoDG
PoDG
GrDG
CA2 CA1Py
cg
dcw
ec
ne
fi
RtSt
Rad
CA3
ne
LV
SLu
LMol
MHb
alv
OrS1BF
dhc
cc
IG
RSGc
RSDM2M1S1HL
S1ShS1DZ
D3V
PVA
CM
IAM
Rh
ReGP
S1ULp
S2
GI
DI
AIP
VCl
DCl
rf
Pir123
LSS
VEn
DEn
BLA
ICeM
BMA
EAC
Bic
B
EAM
ZIR VRe
CxA12
3ACo 2
LOT1
BAOT
3
MeAD
AA
cst
MCPO
HDB
PLH
SM
VLH
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mceracer SO
LA
opt
AHA
SPaf
ANS
PaXi
Xi
PaMPPaV
PaLM
SChVMsox
Pe
PaV
SChDL
3V
3V 3rd ventricleAA anterior amyg areaacer anterior cerebral artACo ant cortical amygdaloid nuAHA anterior hypothal area, antAIP agranular insular cx, postalv alveus hippocampusAM anteromedial thalamic nuAMV anteromed thal nu, ventANS access neurosecretory nu AVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)BAOT bed nu access olfactory trBLA basolat amyg nu, antBMA basomed amyg nu, antcc corpus callosumCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)cst comm stria terminalisCxA1 cortex-amyg trans, lr 1D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centEAM sublent extended amyg, medec external capsuleESO episupraoptic nuf fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrusHDB nu horizlimb diagonal bandhif hippocampal fissureI intercalated nuclei amygIAM interanteromedthal nuic internal capsuleIG indusium griseumLA lateroanterior hypothal nuLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHb lateral habenular nuLMol lacunosum moleculareLOT1 nu lat olf tract, layer 1LSS lat stripe striatumLV lateral ventricleM1 primary motor cxM2 secondary motor cxmcer middle cerebral arteryMCPO magnocell preoptic nuMD mediodorsal thalamic nuMeAD med amygd nu, ant dorsMHb med habenular nuMoDG molecular dentate gyrusmt mammillothalamic tractne neuroepitheliumopt optic tractOr oriens layer hippocampusPaLM paravent hy, lat magnocellPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPoDG polymorph dentate gyrusPT paratenial thalamic nuPVA paraventricular thal nu, antPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1HL prim somatosens, hindlimbS1Sh prim somatosens, shoulderS1ULp prim somatosens, upper lipS2 2ary somatosensory cxSChDL suprachiasmatic, dorsolat
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 11:24 PM Page CCLXXXI
ADMB Book #2 24/8/06 11:24 PM Page CCLXXXII
Figure 129P6 #26
4.47 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Rt
VL
VA
LDVLLDDM
CL
PC
PT
MD
smfi
st
ne
LV
RtSt
GP
B
B
icZIR
VMmt
Sub
ReVRe
PaXiXi
AM
AMV
AngT
AVDM
AVVLLHbL
MHb
LHbM
hif
PoDGGrDG
RadLMolMoDG
CA3SLu
CA1CA2 Py
alv
Or
dcw
S2
GI
DI
AIP DEn
VCl
DCl CPu
ec
S1ULp
S1BF
S1DZ
S1ShS1Tr
LPtAMPtA RSD
RSGccg
IG
cc
dhc
D3V
PVA
IMD
rf
Pir12
3
BLACeL
CeM
CeC
IVEn
EAC
BMA
ACo
LOT
BAOT
AAcstMCPO
HDB
EAM
PLH
VLH
ESO
SO
ictd opt
LA
AHA
SM
sm ANS JPLH
f
AHC
SPa
PaLM
CxA1
2
3
SChVMsox
Pe
A14
3VPaV
PaMP
SChDLMeAD
Rh
IAM
CM
3V 3rd ventricleA14 A14 dopamine cellsAA anterior amyg areaACo ant cortical amygdaloid nuAHA anterior hypothal area, antAHC anterior hy area, centralAIP agranular insular cx, postalv alveus hippocampusAM anteromedial thalamic nuAMV anteromed thal nu, ventAngT angular thalamic nuANS access neurosecretory nu AVDM ant vent thal nu, dorsomedAVVL ant ventral thal, ventrolatB basal nu (Meynert)BAOT bed nu access olfactory trBLA basolat amyg nu, antBMA basomed amyg nu, antcc corpus callosumCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)cst comm stria terminalisCxA1 cortex-amyg trans, lr 1D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centEAM sublent extended amyg, medec external capsuleESO episupraoptic nuf fornixfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrusHDB nu horizlimb diagonal bandhif hippocampal fissureI intercalated nuclei amygIAM interanteromedthal nuic internal capsuleictd internal carotid arteryIG indusium griseumIMD intermediodorsal thal nuJPLH juxtaparaventricular lat hyLA lateroanterior hypothal nuLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLOT nu lateral olfactory tractLPtA lat parietal association cxLV lateral ventricleMCPO magnocell preoptic nuMD mediodorsal thalamic nuMeAD med amygd nu, ant dorsMHb med habenular nuMoDG molecular dentate gyrusMPtA med parietal association cxmt mammillothalamic tractne neuroepitheliumopt optic tractOr oriens layer hippocampusPaLM paravent hy, lat magnocellPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPoDG polymorph dentate gyrusPT paratenial thalamic nuPVA paraventricular thal nu, antPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 11:24 PM Page CCLXXXIII
ADMB Book #2 24/8/06 11:24 PM Page CCLXXXIV
Figure 130P6 #27
4.59 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
VPL
VL
VA
VMscp
RtGP
ic
CPu
mt
AM
AngT
LDDMLDVL
MDL MDM
LHbM
LHbL
sm MHb
PoDGGrDG
st
fi RtSt
nene
CA3
SLudcw
ecS2
GI
DI
AIP
VCl
DEnLaDL
BLACeC
CeL
CeMEAC
EP
DCl
S1ULp
ZIR
EAM
ANS
VReRe
PaXi
S1BF
LPtAMPtA RSD
RSGccg
IG
cc
dhc
D3V
FC
PV
IMD
LMol
Rad
CA1
CA2LV
alv
Py
Or
hif
MoDG
Pir1 23
VEnIM
BMA
ACoCxA1
2
3
AA
cst
MeAD
MeAV
BAOT
SOESO
VLH
PLHHDBMCPO
ictd opt
sox
TuLHLA
AHC
f
JPLH PaLM
AHP
SPa
SChVM
SChDL
Pe
PaV
PaMP
PaDC
Xi
Rh
IAM
CM
PC
CL
3V
S1DZ
LV
3V 3rd ventricleAA anterior amyg areaACo ant cortical amygdaloid nuAHC anterior hy area, centralAHP ant hypothal area, postAIP agranular insular cx, postalv alveus hippocampusAM anteromedial thalamic nuAngT angular thalamic nuANS access neurosecretory nu BAOT bed nu access olfactory trBLA basolat amyg nu, antBMA basomed amyg nu, antcc corpus callosumCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divCL centrolateral thalamic nucg cingulumCM central medial thal nuCPu caudate putamen (striatum)cst comm stria terminalisCxA1 cortex-amyg trans, lr 1D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxEAC sublent extend amyg, centEAM sublent extended amyg, medec external capsuleEP entopeduncular nuESO episupraoptic nuf fornixFC fasciola cinereumfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrusHDB nu horizlimb diagonal bandhif hippocampal fissureIAM interanteromedthal nuic internal capsuleictd internal carotid arteryIG indusium griseumIM intercalated amygd nu, mainIMD intermediodorsal thal nuJPLH juxtaparaventricular lat hyLA lateroanterior hypothal nuLaDL lat amyg nu, dorsolatLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPtA lat parietal association cxLV lateral ventricleMCPO magnocell preoptic nuMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMHb med habenular nuMoDG molecular dentate gyrusMPtA med parietal association cxmt mammillothalamic tractne neuroepitheliumopt optic tractOr oriens layer hippocampusPaDC paraventric hy dorsal capPaLM paravent hy, lat magnocellPaMP paravent hy, med parvicellPaV paraventric hy nu, ventPaXi paraxiphoid nu of thalamusPC paracentral thalamic nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPoDG polymorph dentate gyrusPV paraventricular thalamic nuPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nuRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nuRtSt reticluostrial nuS1BF prim somatosens, barrel S1DZ prim somatosens, dysgranul S1ULp prim somatosens, upper lip
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 11:24 PM Page CCLXXXV
ADMB Book #2 24/8/06 10:29 PM Page CCLXXXVI
Figure 131P6 #28
4.71 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
LDVLLDDM
CL
MDLMDC
MDM
LHbL
LHbM
PoDGGrDG
LMolMoDG
hif
SLu
CA3
DLG
VGfine
ne
LV
st
RtVPL
VPM
VLPC
AngT
AM
Sub
mtVM
EP
icGP
CPu
ZIRVRe
DI
GI
AuV
VCl
DCl
Au1
AuD
ec
S2
dcw
alv cg
CA2
CA1Rad Py
Or
S1BF
LPtA MPtA RSD
RSGc
IG
cc
dhc
D3V
FC
MHb
PV
IMD
CM
Rh
Re
Xi
PaXi
PaPo
PaDC
EA
cst
CeM
CeL
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AIP
rf
Pir12
3
I
BLVCxA
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IM AA MeAD
MeAV
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f
SO
opt
PTe
PLH
TuLH
ictdsox
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VMHSh
AHC
AHP
SPa
Pe
RCh
3V
PaMP
chp
sm
3V 3rd ventricleAA anterior amyg areaACo ant cortical amygdaloid nuAHC anterior hy area, centralAHP ant hypothal area, postAIP agranular insular cx, postalv alveus hippocampusAM anteromedial thalamic nuAngT angular thalamic nuAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBAOT bed nu access olfactory trBLA basolat amyg nu, antBLV basolat amyg, ventralBMA basomed amyg nu, antcc corpus callosumCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumchp choroid plexusCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)cst comm stria terminalisCxA cortex-amyg transition D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxDLG dorsal lat geniculate nuEA sublenticular extend amygec external capsuleEP entopeduncular nuf fornixFC fasciola cinereumfi fimbria hippocampusGI granular insular cxGP globus pallidusGrDG granular dentate gyrushif hippocampal fissureI intercalated nuclei amygic internal capsuleictd internal carotid arteryIG indusium griseumIM intercalated amygd nu, mainIMD intermediodorsal thal nuIMG amyg intramedullary grLaDL lat amyg nu, dorsolatLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPtA lat parietal association cxLV lateral ventricleMDC MD thal nu, centralMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventMHb med habenular nuMoDG molecular dentate gyrusMPtA med parietal association cxmt mammillothalamic tractne neuroepitheliumopt optic tractOr oriens layer hippocampusPaDC paraventric hy dorsal capPaMP paravent hy, med parvicellPaPo paraventricular hy nu, postPaXi paraxiphoid nu of thalamusPC paracentral thal nuPe periventricular hypothal nuPir1 piriform cx, layer 1PLH peduncular part lat hyPoDG polymorph dentate gyrusPTe paraterete nuPV paraventricular thalamic nuPy pyramidal cell hippocampusRad radiatum layer hippocampRCh retrochiasmatic areaRChL retrochiasmatic, lateralRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGc retrosplenial granular cx, cRt reticular thal nu
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCLXXXVII
ADMB Book #2 24/8/06 10:29 PM Page CCLXXXVIII
Figure 132P6 #29
4.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
LDDMLDVL
PoCL
MDL
MDC
MDM
PV
LHbM
LHbM
MHb
sm
LMol
PoDG
GrDG
CA3
SLu
DLG
IGL
IMA
fi
stRt VPL
VPMVL
CM
VM
VG
CA2
dcw MoDG
hif D3V
FCdhc
IMD
ic
ne ne
LV eml
EP
Sub
mtRe
Rh
CPu
GP
ec
LaDLDEn
IMG
CeC
CeL
CeM
S2
AuD
Au1
AuV
S1BF
PtPR
PtPD
CA1 Rad
PyOr
cgRSGb
RSGc
RSDV2MMV2ML
IG
cc
AngTfr
ml
GI
DI
AIP
rf
DCl
VCl
Pir12
3
VEnBLA
STIA
BLVBMA
ACo
MeAV
MeAD
MCLHns
mfb
PLHf
PTe
opt
ictdBAOT
sox
VMH
TuLH
RChL
PeFLH
VMHSh
Pe
AHP
ZIRA13 VRe
PaXiXi
Stg
3V
Arc
3V 3rd ventricleA13 A13 dopamine cellsACo ant cortical amygdaloid nuAHP ant hypothal area, postAIP agranular insular cx, postAngT angular thalamic nuArc arcuate hypothal nuAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBAOT bed nu access olfactory trBLA basolat amyg nu, antBLV basolat amyg, ventralBMA basomed amyg nu, antcc corpus callosumCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)D3V dorsal 3rd ventricleDCl dors part of claustrumdcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDI dysgranular insular cxDLG dorsal lat geniculate nuec external capsuleeml external medullary laminaEP entopeduncular nuf fornixFC fasciola cinereumfi fimbria hippocampusfr fasciculus retroflexusGI granular insular cxGP globus pallidusGrDG granular dentate gyrushif hippocampal fissureic internal capsuleictd internal carotid arteryIG indusium griseumIGL intergeniculate leafIMA intramedullary thalamic areaIMD intermediodorsal thal nuIMG amyg intramedullary grLaDL lat amyg nu, dorsolatLDDM laterodor th nu, dorsomedLDVL laterodor thal nu, ventrolatLHbM lateral habenular nu, medialLMol lacunosum moleculareLV lateral ventricleMCLH magnocell nu lat hypothalMDC MD thal nu, centralMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMeAV med amygd nu, anteroventmfb med forebrain bundleMHb med habenular numl medial lemniscusMoDG molecular dentate gyrusmt mammillothalamic tractne neuroepitheliumns nigrostriatal bundleopt optic tractOr oriens layer hippocampusPaXi paraxiphoid nu of thalamusPe periventricular hypothal nuPeFLH perifornical part of lat hyPir1 piriform cx, layer 1PLH peduncular part lat hyPo post thal nuclear groupPoDG polymorph dentate gyrusPTe paraterete nuPtPD parietal cx, post, dorsalPtPR parietal cx, post, rostralPV paraventricular thalamic nuPy pyramidal cell hippocampusRad radiatum layer hippocampRChL retrochiasmatic, lateralRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cRt reticular thal nuS1BF prim somatosens, barrel S2 2ary somatosensory cxSLu stratum lucidum hippocamp
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCLXXXIX
ADMB Book #2 24/8/06 10:29 PM Page CCXC
Figure 133P6 #30
4.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
LDVLDLG
VGfi
RtVPL
VPM
Po
LPMR
CL
AngT
iml MDL
MDC
LHbLLHbM
fr
hifGrDG
PoDG
MoDG
SLu
CA3
CPu
IMG
CeC
CeL
st
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LV
EP
LEnt
rfDEn
PRh
Ect
TeA
AuV
Au1
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AuD
S1
eml
LaDL
LaVM
LaVL
BLA
BLP
CeM
cst
PtPR
V2L
V1
V2MLV2MM RSD
RSGc
RSGbcg
IGcc
dhc
alv
OrPy
CA1
FC
Rad
LMol
smMHb
D3V
PVP
IMD
MDM
CA2
CMPC
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mtVRe
PaXi Xi
Re
Rh
ns
ZIR
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MCLH PeFLHPeFf
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MePV
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MePDSTIAI
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23
PLCo1
2
3ACo PMCo
BMABMP
soxMTu
RChLArc
VMHVLVMHSh
VMHDM
VMHC
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3V
ml
IGL
3V 3rd ventricleA13 A13 dopamine cellsACo ant cortical amygdaloid nualv alveus hippocampusAngT angular thalamic nuArc arcuate hypothal nuAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLA basolat amyg nu, antBLP basolat amyg nu, postBLV basolat amyg, ventralBMA basomed amyg nu, antBMP basomed amyg nu, postcc corpus callosumCeC central amyg nu, capsularCeL central amygd nu, lat divCeM central amyg nu, med divcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)cst comm stria terminalisD3V dorsal 3rd ventricleDA dorsal hypothal areaDEn dorsal endopiriform nudhc dorsal hippocampal commDLG dorsal lat geniculate nuDMD dorsomed hypothal nu,dorsalec external capsuleEct ectorhinal cortexeml external medullary laminaEP entopeduncular nuf fornixFC fasciola cinereumfi fimbria hippocampusfr fasciculus retroflexusGrDG granular dentate gyrushif hippocampal fissureI intercalated nuclei amygic internal capsuleIG indusium griseumIGL intergeniculate leafIMD intermediodorsal thal nuIMG amyg intramedullary griml int medullary laminaLaDL lat amyg nu, dorsolatLaVL lat amyg nu, ventrolatLaVM lat amyg nu, ventromedLDVL laterodor thal nu, ventrolatLEnt lateral entorhinal cxLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPMR LP thal nu, mediorostralLV lateral ventricleMCLH magnocell nu lat hypothalMDC MD thal nu, centralMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMeAD med amygd nu, ant dorsMePD med amygd nu, posterodorsMePV med amyg nu, posteroventmfb med forebrain bundleMHb med habenular numl medial lemniscusMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nuns nigrostriatal bundleopt optic tractOr oriens layer hippocampusPaXi paraxiphoid nu of thalamusPC paracentral thal nuPeF perifornical nuPeFLH perifornical part of lat hyPir1 piriform cx, layer 1PLCo1 posterolat cortical amyg, 1PMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPRh perirhinal cxPTe paraterete nuPtPR parietal cx, post, rostralPVP paraventricular thal nu, postPy pyramidal cell hippocampusRad radiatum layer hippocampRChL retrochiasmatic, lateralRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cx
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCXCI
ADMB Book #2 24/8/06 10:29 PM Page CCXCII
Figure 134P6 #31
5.07 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Po
VPM
VPL
MDL
MDMIMD
iml
PC
CL frPVP
MHb
LHbM
LHbLLPMRLPLR
sm
DLG
eml
IMACA2
SLu
CA3
fi
VG
IGL
Rt
SubG
ic
EP
ZID
ZIVA13
PHD
Re
Rh
Sub
mt VRe
CM
D3VGrDG
hif
FC
PoDG
MoDG
LMol
Rad
PyOr
CA1
alv cgRSGb
IGcc
dhc
RSGc
RSDV2MMV2ML
V1
V2L
PtPD
PtPR
S1
AuD
Au1
ec
LVCPu
LaDL
LaVMDEn
AuV
TeA
Ect
PRh
rf LEnt
ne
ml
MePD
STIA
BLAI
BLP
IMG
CeC
st
LaVL
Pir1 2 3
BLV BMP
PLCo
PMCo
MePV
sox
opt
PTe
MCLH
PeFf
PeFLH
MTu
ictd
VMHVL
VMHC
VMHSh
DMD
SubI
VM
ArcL ArcM
ArcD
ME
3V
Pe
DA
VMHDM
3V 3rd ventricleA13 A13 dopamine cellsalv alveus hippocampusArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLA basolat amyg nu, antBLP basolat amyg nu, postBLV basolat amyg, ventralBMP basomed amyg nu, postcc corpus callosumCeC central amyg nu, capsularcg cingulumCL centrolateral thal nuCM central medial thal nuCPu caudate putamen (striatum)D3V dorsal 3rd ventricleDA dorsal hypothal areaDEn dorsal endopiriform nudhc dorsal hippocampal commDLG dorsal lat geniculate nuDMD dorsomed hypothal nu,dorsalec external capsuleEct ectorhinal cortexeml external medullary laminaEP entopeduncular nuf fornixFC fasciola cinereumfi fimbria hippocampusfr fasciculus retroflexusGrDG granular dentate gyrushif hippocampal fissureI intercalated nuclei amygic internal capsuleictd internal carotid arteryIG indusium griseumIGL intergeniculate leafIMA intramedullary thalamic areaIMD intermediodorsal thal nuIMG amyg intramedullary griml int medullary laminaLaDL lat amyg nu, dorsolatLaVL lat amyg nu, ventrolatLaVM lat amyg nu, ventromedLEnt lateral entorhinal cxLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLV lateral ventricleMCLH magnocell nu lat hypothalMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medME median eminenceMePD med amygd nu, posterodorsMePV med amyg nu, posteroventMHb medial habenular numl medial lemniscusMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nune neuroepitheliumopt optic tractOr oriens layer hippocampusPC paracentral thal nuPe periventricular hypothal nuPeF perifornical nuPeFLH perifornical part of lat hyPHD post hypothal area, dorsalPir1 piriform cx, layer 1PLCo posterolat cortical amygPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPRh perirhinal cxPTe paraterete nuPtPD parietal cx, post, dorsalPtPR parietal cx, post, rostralPVP paraventricular thal nu, postPy pyramidal cell hippocampusRad radiatum layer hippocampRe reuniens thalamic nurf rhinal fissureRh rhomboid thal nuRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cRt reticular thal nu
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCXCIII
ADMB Book #2 24/8/06 10:29 PM Page CCXCIV
Figure 135P6 #32
5.19 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
VPM
Po
VPL
VPPC
VMZID
ZIV
mtA11
SubG
ic STh
fi
CA3
SLu
CA2 DLG
IGL
VG12
3
dcw
AuV
TeA
Ect
PRh
LEnt
rf
DEnLaDL
LaVM
BLPSTIA
stne
ne
Pir1 2 3
Au1
AuD
PtPR
Rad LMol
PoDGGrDG
hifDS
MoDG
alv
Py
Or
V2L
PtPD
V1V2ML V2MM RSD
RSGc
RSGb
cg
scc
dhc FC
IG
D3V
MHb
LHbLLHbM
LPMRLPLRIMA
strCL
fr
MDLMDM
IMD
PVP
OPC
eml
BMP
I
BLV
RAPir
PLCo
AHiAL PMCo
MePDMCLH
sox
opt
PeFLH DMD
DMC
DMVPeF
f
Te
MTu
ictd
VMHVLVMHDM
VMHSh
VMHC
ArcMArcL
ArcD
3V
Pe
PHD
RRe
CM
PTe
MEE
MEI
LV
LV
3V 3rd ventricleA11 A11 dopamine cellsAHiAL amygdalohip area, antlatalv alveus hippocampusArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBLV basolat amyg, ventralBMP basomed amyg nu, postcg cingulumCL centrolateral thal nuCM central medial thal nuD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDLG dorsal lat geniculate nuDMC dorsomed hy nu, compactDMD dorsomed hypothal nu,dorsalDMV dorsomed hy nu, ventralDS dorsal subiculumEct ectorhinal cortexeml external medullary laminaf fornixFC fasciola cinereumfi fimbria hippocampusfr fasciculus retroflexusGrDG granular dentate gyrushif hippocampal fissureI intercalated nuclei amygic internal capsuleictd internal carotid arteryIG indusium griseumIGL intergeniculate leafIMA intramedullary thalamic areaIMD intermediodorsal thal nuLaDL lat amyg nu, dorsolatLaVM lat amyg nu, ventromedLEnt lateral entorhinal cxLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLV lateral ventricleMCLH magnocell nu lat hypothalMDL mediodorsal thalamic nu, latMDM mediodorsal thal nu, medMEE medial eminence, ext layerMEI medial eminence, internal layerMePD med amygd nu, posterodorsMHb med habenular nuMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nune neuroepitheliumOPC oval paracentral thal nuopt optic tractOr oriens layer hippocampusPe periventricular hypothal nuPeF perifornical nuPeFLH perifornical part of lat hyPHD post hypothal area, dorsalPir1 piriform cx, layer 1PLCo posterolat cortical amygPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPRh perirhinal cxPTe paraterete nuPtPD parietal cx, post, dorsalPtPR parietal cx, post, rostralPVP paraventricular thal nu, postPy pyramidal cell hippocampusRad radiatum layer hippocampRAPir rostral amygdalopiriform rf rhinal fissureRRe retrouniens areaRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cscc splenium corpus callosumSLu stratum lucidum hippocampsox supraoptic decussationst stria terminalisSTh subthalamic nuSTIA ST, intraamygdaloid divstr superior thalamic radiation
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCXCV
ADMB Book #2 24/8/06 11:46 PM Page CCXCVI
Figure 136P6 #33
5.31 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
LPMR
Po
LPLR
DLG
IGL
VG
CA3
SLu
PF
fr
fr
PVP
PoMn
MDM
CMOPC
VPPC
VMscp
mt
ZID
ZIV
VPM
VPL
DS
LHbL
CL
iml
MHb
LHbM
3V
hbc
D3V
IMA
bsc
PoDGGrDG
LMolhif
MoDG
CA2
SubG
ic
opt
sox
fine
LV
stSTh
ml RRe
PHD
A11
LaDLDEn
LaVM
Rad
PyOr
alv
fmj
cg
dhc
RSGb
RSGc
RSDV2MMV2ML
V1
V2L
PtPD
PtPC
AuD
Au1 dcw
AuV
TeA
Ect
PRh
DLEntrf
Pir1 2 3BLP
BMPBLV
RAPirAHiAL
PMCo
I
I STIAMePD
PSTh
PLCoTe
PTef
PeF
PLH
PeFLH
MTuVMHVL
VMHDM
ArcM
ArcL
ArcD
MEEMEI
VMHC
DMDPe
PH
DMV
DMC
VMHSh
3V 3rd ventricleA11 A11 dopamine cellsAHiAL amygdalohip area, antlatalv alveus hippocampusArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBLV basolat amyg, ventralBMP basomed amyg nu, postbsc brachium superior colliculuscg cingulumCL centrolateral thal nuCM central medial thal nuD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDLG dorsal lat geniculate nuDMC dorsomed hy nu, compactDMD dorsomed hypothal nu,dorsalDMV dorsomed hy nu, ventralDS dorsal subiculumEct ectorhinal cortexf fornixfi fimbria hippocampusfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrushbc habenular commissurehif hippocampal fissureI intercalated nuclei amygic internal capsuleIGL intergeniculate leafIMA intramedullary thalamic areaiml int medullary laminaLaDL lat amyg nu, dorsolatLaVM lat amyg nu, ventromedLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLV lateral ventricleMDM mediodorsal thal nu, medMEE medial eminence, ext layerMEI medial eminence, internal layerMePD med amygd nu, posterodorsMHb med habenular numl medial lemniscusMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nune neuroepitheliumOPC oval paracentral thal nuopt optic tractOr oriens layer hippocampusPe periventricular hypothal nuPeF perifornical nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPHD post hypothal area, dorsalPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPoMn posteromedian thal nuPRh perirhinal cxPSTh parasubthalamic nuPTe paraterete nuPtPC parietal cx, post, caudalPtPD parietal cx, post, dorsalPVP paraventricular thal nu, postPy pyramidal cell hippocampusRad radiatum layer hippocampRAPir rostral amygdalopiriform rf rhinal fissureRRe retrouniens areaRSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cscp superior Cb peduncleSLu stratum lucidum hippocampsox supraoptic decussationst stria terminalis
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCXCVII
ADMB Book #2 24/8/06 10:29 PM Page CCXCVIII
Figure 137P6 #34
5.43 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Po
PF
fr
VPM
LPLRLPMR
APT
DS
dhc
RSGb
MHb 3V
hbc
PVPLHbM
LHbLCL
RSGc
RSD
fmj
cg
V2MMV2ML
V1
V2L
PtPC
AuD
Au1
AuV
TeA
Ect
dcw
CA1
Rad
LMol MoDG
GrDG
PoDGbsc
IMA
DLG
strIGL
hif
Py
alvOr
VG1
23 VPL
eml
ml
VPPC
SPFPR
scp A11
mt PHns
mfb
ZID
ZIV
SubG
CA2SLu
CA3
CA3
DEn
PRh
DLEnt
Pir12
3
ne
LaDL
LaVM
BLP
RAPirBMP
AHiAL
sox
opt ic
LV
MePD
STh
cpPSTh
PLH
PMCo
MePV
PLCoTe
f
PeFPeFLH
DM
TuLH
MTuVMH
ArcL
ArcD
ArcM
MEEMEI
3V
Pe
LV
3V 3rd ventricleA11 A11 dopamine cellsAHiAL amygdalohip area, antlatalv alveus hippocampusAPT anterior pretectal nuArcD arcuate hypothal nu, dorsArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBMP basomed amyg nu, postbsc brachium superior colliculuscg cingulumCL centrolateral thal nucp cerebral peduncledcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDLG dorsal lat geniculate nuDM dorsomed hypothal nuDS dorsal subiculumEct ectorhinal cortexeml external medullary laminaf fornixfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrushbc habenular commissurehif hippocampal fissureic internal capsuleIGL intergeniculate leafIMA intramedullary thalamic areaLaDL lat amyg nu, dorsolatLaVM lat amyg nu, ventromedLHbL lateral habenular nu, lateralLHbM lateral habenular nu, medialLMol lacunosum moleculareLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralLV lateral ventricleMEE medial eminence, ext layerMEI medial eminence, internal layerMePD med amygd nu, posterodorsMePV med amyg nu, posteroventmfb med forebrain bundleMHb med habenular numl medial lemniscusMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nune neuroepitheliumns nigrostriatal bundleopt optic tractOr oriens layer hippocampusPe periventricular hypothal nuPeF perifornical nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPR prerubral fieldPRh perirhinal cxPSTh parasubthalamic nuPtPC parietal cx, post, caudalPVP paraventricular thal nu, postPy pyramidal cell hippocampusRad radiatum layer hippocampRAPir rostral amygdalopiriform RSD retrosplenial dysgranular cxRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cscp superior Cb peduncleSLu stratum lucidum hippocampsox supraoptic decussationSPF subparafascicular thal nuSTh subthalamic nustr superior thalamic radiationSubG subgeniculate nuTe terete hypothal nuTeA temporal associatin cxTuLH tuberal region lat hyV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolat
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:29 PM Page CCXCIX
ADMB Book #2 24/8/06 10:29 PM Page CCC
Figure 138P6 #35
5.55 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
VPM
PF fr
VPPC
SPF
PR
SPFPC
VPL
eml
ZID
ZIV
SubG
VG
DLG str Po
CA3
hif
PrCSCO
D3Vpc
LPLR
IMA
LPMRAPTbsc
RSGbRSGa
PoDG
LMolMoDG GrDG
RadPyOralv
CA1
dcw
IGL
RSGc
dhcDS
fmj
cg
RSDV2MMV2MLV1M
V1B
V2L
PtPC
AuD
Au1
AuV
TeA
Ect
D3V
PRh
DLEnt
DEn
Pir12
3LaVM
BLP
CA2SLu
ic
STh
cp
BMP
APir
af
PLCo
AHiAL
PMCo
Te
PSThmfbns
FF
mt
SMT
PH
A113V
PePeFLHf
PLH
MTuTuLH
DM
VMH
ArcLArcM
MEE
MEI
3V
3V 3rd ventricleA11 A11 dopamine cellsaf amygdaloid fissureAHiAL amygdalohip area, antlatalv alveus hippocampusAPir amygdalopiriform transitionAPT anterior pretectal nuArcL arcuate hypothal nu, latArcM arcuate hypothal nu,medAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postBMP basomed amyg nu, postbsc brachium superior colliculuscg cingulumcp cerebral peduncleD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDLG dorsal lat geniculate nuDM dorsomed hypothal nuDS dorsal subiculumEct ectorhinal cortexeml external medullary laminaf fornixFF fields of Forelfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrushif hippocampal fissureic internal capsuleIGL intergeniculate leafIMA intramedullary thalamic areaLaVM lat amyg nu, ventromedLMol lacunosum moleculareLPLR LP thal nu, laterorostralLPMR LP thal nu, mediorostralMEE medial eminence, ext layerMEI medial eminence, internal layermfb med forebrain bundleMoDG molecular dentate gyrusmt mammillothalamic tractMTu medial tuberal nuns nigrostriatal bundleOr oriens layer hippocampuspc posterior commPe periventricular hypothal nuPeFLH perifornical part of lat hyPF parafascicular thal nuPH posterior hypothal nuPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPtPC parietal cx, post, caudalPy pyramidal cell hippocampusRad radiatum layer hippocampRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSCO subcommissural organSLu stratum lucidum hippocampSMT submammillothalamic nuSPF subparafascicular thal nuSPFPC subparafascicular, parvicellSTh subthalamic nustr superior thalamic radiationSubG subgeniculate nuTe terete hypothal nuTeA temporal associatin cxTuLH tuberal region lat hyV1B primary visual cx, binocularV1M prim visual cx, monocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVG ventral geniculate nuVMH ventmed hypothal nuVPL ventral posterolat thal nuVPM vent posteromed thal nuVPPC vent post nu th, parvicellular ZID zona incerta, dorsal ZIV zona incerta, ventral
ADMB Book #2 24/8/06 10:29 PM Page CCCI
ADMB Book #2 24/8/06 10:30 PM Page CCCII
Figure 139P6 #36
5.67 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
Po
PF
fr
LP
RSDV2MM
V2MLV1M
V1B
V2L
PtPC
AuD
RSGcfmj
dhc
LV
RSGbRSGa
MPTOPT
D3V
SCO
pc
PrC
p1PAG
APTD
APTVIMA
DLG
GrDG bsc
DS
Py
Rad
LMol
MoDG
PoDG
Or
alv
dcw
CA1
hif
CA3
VG
IGL str
VPM
VPPC
SPFA11
PR
ml
SPFPC
VLi
ZID
ZIV
SubG
Au1
AuV
TeA
Ect
PRh
DLEnt
DEn
Pir1 2 3
LaVM
BLP
CA2
SLu
icsox
SNR
cpAPir
PLCo
afPMCo
AHiPMAHiPL
GrDG
PLH
Tef
MTuPMV
TuLH
PMD
mtGem
FF
F
ns
mfb
PH
PHA
DTM
DM
ArcMPArcLP
Inf
3V
3V
PSThSTh
3V 3rd ventricleA11 A11 dopamine cellsaf amygdaloid fissureAHiPL amygdalohip area, postlatAHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPTD ant pretectal nu, dorsAPTV ant pretectal nu, ventralArcLP arcuate hy nu, lateropostArcMP arcuate hy nu, med postAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postbsc brachium superior colliculuscp cerebral peduncleD3V dorsal 3rd ventricledcw deep cerebral whiteDEn dorsal endopiriform nudhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDLG dorsal lat geniculate nuDM dorsomed hypothal nuDS dorsal subiculumDTM dors tuberomammillary nuEct ectorhinal cortexF nu fields of Forelf fornixFF fields of Forelfmj forceps maj corpus callfr fasciculus retroflexusGem gemini hypothalamic nuGrDG granular dentate gyrushif hippocampal fissureic internal capsuleIGL intergeniculate leafIMA intramedullary thalamic areaInf infundibulumLaVM lat amyg nu, ventromedLMol lacunosum moleculareLP lateral posterior thal nuLV lateral ventriclemfb med forebrain bundleml medial lemniscusMoDG molecular dentate gyrusMPT medial pretectal numt mammillothalamic tractMTu medial tuberal nuns nigrostriatal bundleOPT olivary pretectal nuOr oriens layer hippocampusp1PAG p1 periaqueductal graypc posterior commPF parafascicular thal nuPH posterior hypothal nuPHA posterior hypothal areaPir1 piriform cx, layer 1PLCo posterolat cortical amygPLH peduncular part lat hyPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPMV premammillary nu, ventPo post thal nuclear groupPoDG polymorph dentate gyrusPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPtPC parietal cx, post, caudalPy pyramidal cell hippocampusRad radiatum layer hippocampRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSCO subcommissural organSLu stratum lucidum hippocampSNR s nigra, reticularsox supraoptic decussationSPF subparafascicular thal nuSPFPC subparafascicular, parvicellSTh subthalamic nustr superior thalamic radiationSubG subgeniculate nuTe terete hypothal nuTeA temporal associatin cxTuLH tuberal region lat hyV1B primary visual cx, binocularV1M prim visual cx, monocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolat
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:30 PM Page CCCIII
ADMB Book #2 24/8/06 10:30 PM Page CCCIV
Figure 140P6 #37
5.79 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
VPM
RSD
RSGc
RSGbRSGa
V2MMV2MLV1M
V1B
V2L
AuD
Au1
AuV
DS
LV
dhc
fmj
OPTMPT
pc E
SCO
PrCMCPC
p1PAG
3VPF
p1Rt
APTD
OTbsc
LP
APTV
Sc
Eth
PoMGD
DLG
MGVstr
VG
opt
ZIC
IGL
ZID
ZIVSubG
ic
CA3
SPFPC
fr
RIA11
PH
PR
ml
F
VLi
hif
Rad
LMol
PoDG
GrDG
MoDG
Py
Or
CA1
dcw
alv
Ect
PRh
DLEnt
APir
BLP
AHiPLPLCo
af PMCo
AHiPM VS
SLuSNR
SNCD
PSTh
Gem
mtg
SuML pm
SuML
PHA
PLH
fTe
a
MoDG
cp
PMD
TuLHMTu
VTM
PMV
DTM
ArcLP
ArcMP
MRe
SuMM
TeA
3V 3rd ventriclea arteryA11 A11 dopamine cellsaf amygdaloid fissureAHiPL amygdalohip area, postlatAHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPTD ant pretectal nu, dorsAPTV ant pretectal nu, ventralArcLP arcuate hy nu, lateropostArcMP arcuate hy nu, med postAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralBLP basolat amyg nu, postbsc brachium superior colliculuscp cerebral peduncledcw deep cerebral whitedhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDLG dorsal lat geniculate nuDS dorsal subiculumDTM dors tuberomammillary nuE ependyma/ subependymalEct ectorhinal cortexEth ethmoid thalamic nuF nu fields of Forelf fornixfmj forceps maj corpus callfr fasciculus retroflexusGem gemini hypothalamic nuGrDG granular dentate gyrushif hippocampal fissureic internal capsuleIGL intergeniculate leafLMol lacunosum moleculareLP lateral posterior thal nuLV lateral ventricleMCPC magnocell nu post commMGD med geniculate nu, dorsalMGV med geniculate nu, ventralml medial lemniscusMoDG molecular dentate gyrusMPT medial pretectal nuMRe mammillary recess 3Vmtg mammillotegmental tractMTu medial tuberal nuOPT olivary pretectal nuopt optic tractOr oriens layer hippocampusOT nu of the optic tractPAG periaqueductal graypc posterior commPF parafascicular thal nuPH posterior hypothal nuPHA posterior hypothal areaPLCo posterolat cortical amygPLH peduncular part lat hypm principal mammillary trPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPMV premammillary nu, ventPo post thal nuclear groupPoDG polymorph dentate gyrusPR prerubral fieldPrC precommissural nuPRh perirhinal cxPSTh parasubthalamic nuPy pyramidal cell hippocampusRad radiatum layer hippocampRI rostral interstitial nu of mlfRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cRt reticular thal nuSc scaphoid thal nuSCO subcommissural organSLu stratum lucidum hippocampSNCD s nigra, compact, dors tierSNR s nigra, reticularSPFPC subparafascicular, parvicellstr superior thalamic radiationSubG subgeniculate nuSuML supramammillary nu, lat SuMM supramammillary nu, medial Te terete hypothal nuTeA temporal associatin cxTuLH tuberal region lat hyV1B primary visual cx, binocularV1M prim visual cx, monocular
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:30 PM Page CCCV
ADMB Book #2 24/8/06 10:30 PM Page CCCVI
APT
PLi
LP
MGD
MGV
PILEth
ScPo
VPM
MGM
IGLVGopt
SubG
str
p1Rt
RPF
RSD
V2MMV2ML
V1
AuD
Au1
AuV
TeA
RSGcfmj
RSGbRSGaDS
dhc
MPTOPTOT
PCompc
SCOPrC
MCPC
Lth
3V
p1PAG
A11
frPR
RI
PH
mtg
PHAGem
ns
FF
ml
SPFPCZIC
ZIV
SNR PBP
SNCD
DLEnt
Ect
rf
Py Rad
LMol
GrDG
MoDG
PoDG
hif
CA1alv
Or
APir
PMCoaf
AHiPMVS
SLu
CA3
cp
aMoDG
LMf
VTM
ArcLP
PMD
MM MnM
SuMMpm
SuML
PLH
ArcMP
MRe
ML
V2L
PRh
LV
Figure 141P6 #38
5.91 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventriclea arteryA11 A11 dopamine cellsaf amygdaloid fissureAHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPT anterior pretectal nuArcLP arcuate hy nu, lateropostArcMP arcuate hy nu, med postAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralcp cerebral peduncledhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDS dorsal subiculumEct ectorhinal cortexEth ethmoid thalamic nuf fornixFF fields of Forelfmj forceps maj corpus callfr fasciculus retroflexusGem gemini hypothalamic nuGrDG granular dentate gyrushif hippocampal fissureIGL intergeniculate leafLM lateral mammillary nuLMol lacunosum moleculareLP lateral posterior thal nuLth lithoid nuLV lateral ventricleMCPC magnocell nu post commMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMnM medial mammillary nu, medMoDG molecular dentate gyrusMPT medial pretectal nuMRe mammillary recess 3Vmtg mammillotegmental tractns nigrostriatal bundleOPT olivary pretectal nuopt optic tractOr oriens layer hippocampusOT nu of the optic tractPAG periaqueductal grayPBP parabrachial pigmented nupc posterior commPCom nu posterior commPH posterior hypothal nuPHA posterior hypothal areaPIL post intralaminar thal nuPLH peduncular part lat hyPLi posterior limitans thal nupm principal mammillary trPMCo posteromed cortical amyg nuPMD premammillary nu, dorsPo post thal nuclear groupPoDG polymorph dentate gyrusPR prerubral fieldPrC precommissural nuPRh perirhinal cxPy pyramidal cell hippocampusRad radiatum layer hippocamprf rhinal fissureRI rostral interstitial nu of mlfRPF retroparafascicular nuRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRSGc retrosplenial granular cx, cSc scaphoid thal nuSCO subcommissural organSLu stratum lucidum hippocampSNCD s nigra, compact, dors tierSNR s nigra, reticularSPFPC subparafascicular, parvicellstr superior thalamic radiationSubG subgeniculate nuSuML supramammillary nu, lat SuMM supramammillary nu, medial TeA temporal associatin cxV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVG ventral geniculate nuVPM vent posteromed thal nu
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:30 PM Page CCCVII
ADMB Book #2 24/8/06 10:30 PM Page CCCVIII
p1Rt
V2MMV2ML
V1
V2L
AuD
Au1
AuV
TeA
dcwalv
RSD
fmj
LVdhc RSGb
RSGa
Post MPT
SC
PPTOPT
OT
LP
APT
TG
PCom
pc
MCPC
Lthp1PAG
3V
A11
PLiPo
SGMGD
GrDG
PoDG MGV
MZMG
MGM PoT
PP PILEth
REthZICEpPLT
CA3
LMol
RadCA1
Py
Or
Ect
PRh
DLEnt
rf
SPFPC
mlPR fr
RI
mtgPHA
DS
SNL
SNR
SNCD
PBP
FF
sumx
SuMMSuML
PLH
MLf
LM
VTM
cp
MoDG
VSAPir
afPMCo
AHiPM
LV
SLu
pm
MM
MRe
MnM
ArcMP
Figure 142P6 #39
6.03 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3V 3rd ventricleA11 A11 dopamine cellsaf amygdaloid fissureAHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPT anterior pretectal nuArcMP arcuate hy nu, med postAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralcp cerebral peduncledcw deep cerebral whitedhc dorsal hippocampal commDLEnt dorsolateral entorhinal cxDS dorsal subiculumEct ectorhinal cortexEpP epipeduncular nuEth ethmoid thalamic nuf fornixFF fields of Forelfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrusLM lateral mammillary nuLMol lacunosum moleculareLP lateral posterior thal nuLT lat terminal nu acc optic trLth lithoid nuLV lateral ventricleMCPC magnocell nu post commMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMnM medial mammillary nu, medMoDG molecular dentate gyrusMPT medial pretectal nuMRe mammillary recess 3Vmtg mammillotegmental tractMZMG marg zone med geniculateOPT olivary pretectal nuOr oriens layer hippocampusOT nu of the optic tractPAG periaqueductal grayPBP parabrachial pigmented nupc posterior commPCom nu posterior commPHA posterior hypothal areaPIL post intralaminar thal nuPLH peduncular part lat hyPLi posterior limitans thal nupm principal mammillary trPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPost postsubiculumPoT posterior thal nu, triangularPP peripeduncular nuPPT posterior pretectal nuPR prerubral fieldPRh perirhinal cxPy pyramidal cell hippocampusRad radiatum layer hippocampREth retroethmoid nurf rhinal fissureRI rostral interstitial nu of mlfRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bRt reticular thal nuSC superior colliculusSG suprageniculate thal nuSLu stratum lucidum hippocampSNCD s nigra, compact, dors tierSNL s nigra, lateralSNR s nigra, reticularSPFPC subparafascicular, parvicellSuML supramammillary nu, lat SuMM supramammillary nu, medial sumx supramammillary decussTeA temporal associatin cxTG tectal grayV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVS ventral subiculumVTM vent tuberomammillary nuZIC zona incerta, caudal
ADMB Book #2 24/8/06 10:30 PM Page CCCIX
ADMB Book #2 24/8/06 10:30 PM Page CCCX
mRtDk
V2MMV2ML
RSDV1M
V1B
V2L
AuD
Au1
AuV
TeA
Ect dcwalv
DS
LV dhc
fmj
RSGb
RSGa
Post
Zo
SuG
OpInG PaC
InWhDpG
OT
PPT
OPT TG
APTDp1Rt
PCompc
MCPC
Lth
Aq
p1PAGPlPAG
csc
LPPo
SGMGDMoDG
GrDG
MGV
MGMPoT
PP
PoDGDLEnt
rfAPTV
PLi
PIL
ZIC
SNLEpP
CA3SNCD
ml
SPFPC
PR
fr
mtg
RLi
APir
AHiPMVS
PMCoaf
5Gn
s5
4n
3n
cp
LM
VTMSuML
PLH
PBP
SNRVTAR
sumx
SuMM
MMpm
MLf
mp
PRh
m5
APitPPitIPit
Figure 143P6 #40
6.15 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve4n trochlear nerve5Gn trigeminal ganglionaf amygdaloid fissureAHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPit anterior lobe pituitaryAPTD ant pretectal nu, dorsAPTV ant pretectal nu, ventralAq aqueductAu1 primary auditory cortexAuD 2ary auditory cx, dorsalAuV 2ary auditory cx, ventralcp cerebral pedunclecsc comm superior colliculusdcw deep cerebral whitedhc dorsal hippocampal commDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDpG deep gray superior collDS dorsal subiculumEct ectorhinal cortexEpP epipeduncular nuf fornixfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrusInG intermed gray layer SCInWh intermediate white layer SCIPit intermediate lobe pitLM lateral mammillary nuLP lateral posterior thal nuLth lithoid nuLV lateral ventriclem5 motor root trigeminal nerveMCPC magnocell nu post commMGD med geniculate nu, dorsalMGM med geniculate nu, medialMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMoDG molecular dentate gyrusmp mammillary pedunclemRt mesenceph reticular formationmtg mammillotegmental tractOp optic nerve layer sup coll OPT olivary pretectal nuOT nu of the optic tractp1PAG p1 periaqueductal grayPaC paracomm nu post comPBP parabrachial pigmented nupc posterior commPCom nu posterior commPIL post intralaminar thal nuPLH peduncular part lat hyPLi posterior limitans thal nuPlPAG pleoglial PAGpm principal mammillary trPMCo posteromed cortical amyg nuPo post thal nuclear groupPoDG polymorph dentate gyrusPost postsubiculumPoT posterior thal nu, triangularPP peripeduncular nuPPit posterior lobe pitPPT posterior pretectal nuPR prerubral fieldPRh perirhinal cxrf rhinal fissureRLi rostral linear nu rapheRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bs5 sensory root trigem nSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNL s nigra, lateralSNR s nigra, reticularSPFPC subparafascicular, parvicellSuG superficial gray sup collSuML supramammillary nu, lat SuMM supramammillary nu, medial sumx supramammillary decussTeA temporal associatin cxTG tectal grayV1B primary visual cx, binocularV1M prim visual cx, monocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomed
Refer to Index of Abbreviations for other entries
ADMB Book #2 24/8/06 10:30 PM Page CCCXI
ADMB Book #2 24/8/06 10:30 PM Page CCCXII
mRt
V2MM
RSD
V2ML
V1
V2L
AuD
TeA
DS
dhc
fmj
RSGaRSGb
Pi
Post
LV
dcw
alv
LP
Po APT
TG
Zo
PaC
SuGOp
InG
InWhDpG
DpWhPCom
csc
DMPAG
PlPAG
Aqp1PAG
pc
MCPC
p1Rt
PLi
MGD
MGV
PoT
SG
bic
MoDGSubB
GrDG
PIL
RPC
InC
mlPBP
SNL
PoDG
rfPRh
DLEnt
APir
VS
AHiPM
PaS
SNR
Dk
SNCD
PBP
VTAR
fr
mtg RLi
IF
SuMM
MM
ML
mpLM
SuML
VTM
cp
MT
Ect
Figure 144P6 #41
6.27 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
AHiPM amygdalohip, posteromedalv alveus hippocampusAPir amygdalopiriform transitionAPT anterior pretectal nuAq aqueductAuD 2ary auditory cx, dorsalbic brachium inf colliculuscp cerebral pedunclecsc comm superior colliculusdcw deep cerebral whitedhc dorsal hippocampal commDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDS dorsal subiculumEct ectorhinal cortexfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrusIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCLM lateral mammillary nuLP lateral posterior thal nuLV lateral ventricleMCPC magnocell nu post commMGD med geniculate nu, dorsalMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusMM med mammillary nu, medialMoDG molecular dentate gyrusmp mammillary pedunclemRt mesenceph reticular formationMT med terminal nu acc optic trmtg mammillotegmental tractOp optic nerve layer sup collp1PAG p1 periaqueductal gray PaC paracomm nu post comPaS parasubiculumPBP parabrachial pigmented nupc posterior commPCom nu posterior commPi pineal glandPIL post intralaminar thal nuPLi posterior limitans thal nuPlPAG pleoglial PAGPo post thal nuclear groupPoDG polymorph dentate gyrusPost postsubiculumPoT posterior thal nu, triangularPRh perirhinal cxrf rhinal fissureRLi rostral linear nu rapheRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNL s nigra, lateralSNR s nigra, reticularSubB subbrachial nuSuG superficial gray sup collSuML supramammillary nu, lat SuMM supramammillary nu, medial TeA temporal associatin cxTG tectal grayV1 primary visual cortexV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVS ventral subiculumVTAR vent tegmental area, rostr VTM vent tuberomammillary nuZo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXIII
ADMB Book #2 24/8/06 10:30 PM Page CCCXIV
PaS
DS
alvdcw
DLEnt
PRh
rf
Ect
TeA
DIEnt
VIEnt
MoDG
SNL
SubB PIL
PoT
bic
MGV
MGD
PoSG
LPPrS
Post
APTPLi
TG
mRt
RPC
RMC
MT
ml
PBPVTARSNCD
SNR
VS
V2L
V1B
fmj
dhcLV
RSGa Zo SuGOp
InG
InWh
DpG
DpWh LPAG
DLPAG
V2ML V2MM
RSD
RSGb Pi
DMPAG
PlPAG
Aq
Dk
InCMA3
mlf
mtgscp
PrEW
RLi
IF
MEnt
CEnt
GrDG
SNCV
cp
SNCD
SuML
ML
SuMM
IPF
IPC
IPRfr
Figure 145P6 #42
6.39 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
alv alveus hippocampusAPT anterior pretectal nuAq aqueductbic brachium inf colliculusCEnt caudomed entothinal cxcp cerebral peduncledcw deep cerebral whitedhc dorsal hippocampal commDIEnt dorsintermed entorhinal cxDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDS dorsal subiculumEct ectorhinal cortexfmj forceps maj corpus callfr fasciculus retroflexusGrDG granular dentate gyrusIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPC IPC nu, caudal IPF interpedunc fossaIPR interpedunc nu, rostral subLP lateral posterior thal nuLPAG lat periaqueductal grayLV lateral ventricleMA3 med access oculomotor nuMEnt med entorhinal cxMGD med geniculate nu, dorsalMGV med geniculate nu, ventralML med mammillary nu, latml medial lemniscusmlf med longitudinal fasciculusMoDG molecular dentate gyrusmRt mesenceph reticular formMT med terminal nu acc optic trmtg mammillotegmental tractOp optic nerve layer sup coll PaS parasubiculumPBP parabrachial pigmented nuPi pineal glandPIL post intralaminar thal nuPLi posterior limitans thal nuPlPAG pleoglial PAGPo post thal nuclear groupPost postsubiculumPoT posterior thal nu, triangularPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumrf rhinal fissureRLi rostral linear nu rapheRMC red nu, magnocell partRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, aRSGb retrosplenial granular cx, bscp superior Cb peduncleSG suprageniculate thal nuSNCD s nigra, compact, dors tierSNCV s nigra, compact, vent tierSNL s nigra, lateralSNR s nigra, reticularSubB subbrachial nuSuG superficial gray sup collSuML supramammillary nu, lat SuMM supramammillary nu, medial TeA temporal associatin cxTG tectal grayV1B primary visual cx, binocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVIEnt ventral intermed entorhinalVS ventral subiculumVTAR vent tegmental area, rostr Zo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXV
ADMB Book #2 24/8/06 10:30 PM Page CCCXVI
VS
DS
PrS
PaS
DG
SNR
SNL
SubB
mRt
RPC
RMC
ml
SNCDPBP
CEnt
MEnt
VIEnt
DIEnt
DLEnt
PRh
rfdcw
alv
LV
bicBIC
APT
Post
Ect
cpvIPF
mpSNCM
PIFPN
fr
IPL IPC
IPR
IF
RLivtgx
mtg
scp
mlf
MA3
PrEWDk
InC
LPAGAq
DLPAG
DMPAGPlPAG
DpWh
DpG
InWhInG
Op
SuGZo
PiRSD
RSGa
V2MMV2ML
V1M
V1B
V2L
TeA
Post
ptgpal5Gn
s5 m5
3n
4n
Pn bas
APit6n
Figure 146P6 #43
6.51 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve4n trochlear nerve5Gn trigeminal ganglion6n root of abducens nervealv alveus hippocampusAPit anterior lobe pituitaryAPT anterior pretectal nuAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxcp cerebral peduncledcw deep cerebral whiteDG dentate gyrusDIEnt dorsintermed entorhinal cxDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDS dorsal subiculumEct ectorhinal cortexfr fasciculus retroflexusIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPC IPC nu, caudal IPF interpedunc fossaIPL interpedunc nu, lat subnuIPR interpedunc nu, rostral subLPAG lat periaqueductal grayLV lateral ventriclem5 motor root trigeminal nerveMA3 med access oculomotor nuMEnt med entorhinal cxml medial lemniscusmlf med longitudinal fasciculusmp mammillary pedunclemRt mesenceph reticular formmtg mammillotegmental tractOp optic nerve layer sup coll PaS parasubiculumPBP parabrachial pigmented nuPi pineal glandPIF parainterfascicular nu VTAPlPAG pleoglial PAGPN paranigral nu of the VTAPn pontine nucleiPost postsubiculumPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumptgpal pterygopalatine nrf rhinal fissureRLi rostral linear nu rapheRMC red nu, magnocell partRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, as5 sensory root trigem nscp superior Cb peduncleSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNL s nigra, lateralSNR s nigra, reticularSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxv veinV1B primary visual cx, binocularV1M prim visual cx, monocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVIEnt ventral intermed entorhinalVS ventral subiculumvtgx vent tegmental decussationZo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXVII
ADMB Book #2 24/8/06 10:30 PM Page CCCXVIII
VS
PaS
CEnt
MEnt
VIEnt
DIEnt
DLEnt
PRhrf
dcw
alvDS
PrS
Ect
TeA
BIC
bic
SubB
mRt
PaR
SNR
SNCD
SNCM
PBP
PIF
ml
mpcp IPL
RMC
RPC
scp RLimtg
Dk
InC
DpG
V2L
Post InWh
InG
DpWhLPAG
DLPAG
V1B
V1M
V2MLV2MM RSD
RSGa SuG
Zo
Op
Pi
PlPAG
DMPAG
Aq
PrEW
MA3
mlf
4n
s5m5
5Gn
ptgpal
a
lfp
Pn
mcp
tfp
IPC
IPR
IPDL
PN
IF
IPDM
3n
bas
Figure 147P6 #44
6.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3n oculomotor nerve4n trochlear nerve5Gn trigeminal gangliona arteryalv alveus hippocampusAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxcp cerebral peduncledcw deep cerebral whiteDIEnt dorsintermed entorhinal cxDk nu of DarkschewitschDLEnt dorsolateral entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDS dorsal subiculumEct ectorhinal cortexIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPDM interpedunc nu, dorsomedIPL interpedunc nu, lat subnuIPR interpedunc nu, rostral sublfp longitudinal fasciculus ponsLPAG lat periaqueductal graym5 motor root trigeminal nerveMA3 med access oculomotor numcp middle cerebellar peduncleMEnt med entorhinal cxml medial lemniscusmlf med longitudinal fasciculusmp mammillary pedunclemRt mesenceph reticular formmtg mammillotegmental tractOp optic nerve layer sup coll PaR pararubral nuPaS parasubiculumPBP parabrachial pigmented nuPi pineal glandPIF parainterfascicular nu VTAPlPAG pleoglial PAGPN paranigral nu of the VTAPn pontine nucleiPost postsubiculumPrEW pre-Edinger-Westphal nuPRh perirhinal cxPrS presubiculumptgpal pterygopalatine nrf rhinal fissureRLi rostral linear nu rapheRMC red nu, magnocell partRPC red nu, parvicell partRSD retrosplenial dysgranular cxRSGa retrosplenial granular cx, as5 sensory root trigem nscp superior Cb peduncleSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNR s nigra, reticularSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxtfp transverse fibers ponsV1B primary visual cx, binocularV1M prim visual cx, monocularV2L 2ary visual cx, lat areaV2ML 2ary visual cx, mediolatV2MM 2ary visual cx, mediomedVIEnt ventral intermed entorhinalVS ventral subiculumZo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXIX
ADMB Book #2 24/8/06 10:30 PM Page CCCXX
Pn
bas
tfp
lfp
mltth
s5
m5mcp
VLL
ll
MPL
IPLpcer cp
ml
SNR
SNCD
PBP
PnO IPI
IPC
IPRIPDL
IPDMPN
PIF IF
PaR
RMC scp
RL vtgx
mlf
InC3N
Dk
EW
mRt
BIC
bic
PrS
VS
DS
PaS
LPAG
DLPAG
DMPAG
Aq
plPAG
Post
DpWh
DpG
InWh
InG
Op
SuG
ZoPi
RSDV2MM
RSG
V1
V2L
TeA
Ect
PRh
rf
LEnt
DIEnt
SubB
SNL
CEnt
MEnt
dcw
Figure 148P6 #45
6.75 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nuAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxcp cerebral peduncledcw deep cerebral whiteDIEnt dorsintermed entorhinal cxDk nu of DarkschewitschDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDS dorsal subiculumEct ectorhinal cortexEW Edinger-Westphal nuIF interfascicular nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPDM interpedunc nu, dorsomedIPI interpedunc nu, intermedIPL interpedunc nu, lat subnuIPR interpedunc nu, rostral subLEnt lateral entorhinal cxlfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMEnt med entorhinal cxml medial lemniscusmlf med longitudinal fasciculusMPL medial paralemniscial numRt mesenceph reticular formOp optic nerve layer sup coll PaR pararubral nuPaS parasubiculumPBP parabrachial pigmented nupcer post cerebral artPi pineal glandPIF parainterfascicular nu VTAPlPAG pleoglial PAGPN paranigral nu of the VTAPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPRh perirhinal cxPrS presubiculumrf rhinal fissureRL retrolemniscal nuRMC red nu, magnocell partRSD retrosplenial dysgranular cxRSG retrosplenial granular cxs5 sensory root trigem nscp superior Cb peduncleSNCD s nigra, compact, dors tierSNL s nigra, lateralSNR s nigra, reticularSubB subbrachial nuSuG superficial gray sup collTeA temporal associatin cxtfp transverse fibers ponstth trigeminothalamic trV1 primary visual cortexV2L 2ary visual cx, lat areaV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusVS ventral subiculumvtgx vent tegmental decussationZo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXXI
ADMB Book #2 24/8/06 10:30 PM Page CCCXXII
bastfp
Pn
lfpmcp
VLLml
s5
m5
MPL
ll
cp
PnO IPLIPI
IPC
IPDL
IPA
IPR
SNR
SNCD
SNCV
SNCM
RRFrs
PIF
PBP
PaR
RMC
CLi
xscp
scpdtgx
InC
mRt Dk
Su3CSu3
3PC
3N
DRVmlf
LPAG
DLPAG
DMPAG
PlPAGAq
DpWh
DpG
Zo
SuG
Op
InG
InWh
RSD
RSG
Post
V2MM
V2L
Ect
PRh
PrSbic
BIC
LEnt
SubBPaSDIEnt
MEnt CEnt
EW
dcw
Figure 149P6 #46
6.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
3N oculomotor nu3PC oculomotor nu, parvicellularAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxCLi caudal linear nu raphecp cerebral peduncledcw deep cerebral whiteDIEnt dorsintermed entorhinal cxDk nu of DarkschewitschDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRV dorsal raphe nu, ventraldtgx dors tegmental decussationEct ectorhinal cortexEW Edinger-Westphal nuInC interstitial nu of CajalInG intermed gray layer SCInWh intermediate white layer SCIPA interpedunc nu, apical subnuIPC IPC nu, caudal IPDL interpedunc nu, dorsolatIPI interpedunc nu, intermedIPL interpedunc nu, lat subnuIPR interpedunc nu, rostral subLEnt lateral entorhinal cxlfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMEnt med entorhinal cxml medial lemniscusmlf med longitudinal fasciculusMPL medial paralemniscial numRt mesenceph reticular formOp optic nerve layer sup coll PaR pararubral nuPaS parasubiculumPBP parabrachial pigmented nuPIF parainterfascicular nu VTAPlPAG pleoglial PAGPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPRh perirhinal cxPrS presubiculumRMC red nu, magnocell partRRF retrorubral fieldrs rubrospinal tractRSD retrosplenial dysgranular cxRSG retrosplenial granular cxs5 sensory root trigem nscp superior Cb peduncleSNCD s nigra, compact, dors tierSNCM s nigra, compact, med tierSNCV s nigra, compact, vent tierSNR s nigra, reticularSu3 supraoculomotor PAGSu3C supraoculomotor capSubB subbrachial nuSuG superficial gray sup colltfp transverse fibers ponsV2L 2ary visual cx, lat areaV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #2 24/8/06 10:30 PM Page CCCXXIII
ADMB Book #2 24/8/06 10:31 PM Page CCCXXIV
7n
ptgpal
s5
mcp m5
bas
tfp
lfp
Pn
mltth
ll
ts
cp
MPL
VLLrs
PnOMnR
PMnR
PTg
IPA
IPCIPI
CLi
xscp
DRVPa4
4N
mlf
4ShSu3
VLPAG
LPAG
mRt
RRF/A8
PBGMiTg
SubB
ECIC
BICbic
PrCnF DRD
PlPAGAq
DLPAG
DMPAG
DpWh
DpG
InWh
InG
Op
SuG
Zo
V2MM
V1
RSD
Post
V2L
Ect
PRh
LEnt
PaSDIEnt
MEnt
CEnt
ll
RtTg
Figure 150P6 #47
6.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu4Sh trochlear nu shell region7n facial nerveAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxCLi caudal linear nu raphecp cerebral peduncleDIEnt dorsintermed entorhinal cxDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralECIC external cx inferior collEct ectorhinal cortexInG intermed gray layer SCInWh intermediate white layer SCIPA interpedunc nu, apical subnuIPC IPC nu, caudal IPI interpedunc nu, intermedLEnt lateral entorhinal cxlfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMEnt med entorhinal cxMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial numRt mesencephalic retic formOp optic nerve layer sup coll Pa4 paratrochlear nuPaS parasubiculumPBG parabigeminal nuPlPAG pleoglial PAGPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Post postsubiculumPrCnF precuneiform areaPRh perirhinal cxPTg pedunculopontine tegmentalptgpal pterygopalatine nRRF/A8 retrorubral/A8 dopaminers rubrospinal tractRSD retrosplenial dysgranular cxRtTg reticulotegmental nu ponss5 sensory root trigem nSu3 supraoculomotor PAGSubB subbrachial nuSuG superficial gray sup colltfp transverse fibers ponsts tectospinal trtth trigeminothalamic trV1 primary visual cortexV2L 2ary visual cx, lat areaV2MM 2ary visual cx, mediomedVLL ventral nu lat lemniscusVLPAG ventlat periaqueductal grayxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #2 24/8/06 10:31 PM Page CCCXXV
ADMB Book #2 24/8/06 10:31 PM Page CCCXXVI
CEnt
PaS
ll
rsmcp
ptgpal
m5
s5
mcp
ll
VLL
ILL
5TT
Pr5
7n
TempP
VeGn
MPL
RR
PLV
MVPO
bas
tfp
lfp
tthml
RtTg
Pn
PMnR
MnRPnO ts
xscp
PTg CLi
bic
mRt
BICECIC PrCnF
PBG MiTg
RRF/A8
SubB
RSD
DpWh
DpG
DRV
4N
DRDVLPAG
LPAG
DLPAG
DMPAG
mlf
4Sh
PlPAG
Aq
InWh
InG
Op
SuGZo
V1
V2L
Ect
PRh
Figure 151P6 #48
7.11 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu4Sh trochlear nu shell region5TT motor trigem, tensor tymp7n facial nerveAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCEnt caudomed entothinal cxCLi caudal linear nu rapheDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralECIC external cx inferior collEct ectorhinal cortexILL intermed nu lat lemniscusInG intermed gray layer SCInWh intermediate white layer SClfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial numRt mesenceph reticular formMVPO medioventral periolivary nuOp optic nerve layer sup coll PaS parasubiculumPBG parabigeminal nuPlPAG pleoglial PAGPLV perilemniscal nu, ventral PMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPrCnF precuneiform areaPRh perirhinal cxPTg pedunculopontine tegmentalptgpal pterygopalatine nRR retrorubral nuRRF/A8 retrorubral/A8 dopaminers rubrospinal tractRSD retrosplenial dysgranular cxRtTg reticulotegmental nu ponss5 sensory root trigem nSubB subbrachial nuSuG superficial gray sup collTempP temporal bone, petroustfp transverse fibers ponsts tectospinal trtth trigeminothalamic trV1 primary visual cortexV2L 2ary visual cx, lat areaVeGn vestibular n ganglionVLL ventral nu lat lemniscusVLPAG ventlat periaqueductal grayxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #2 24/8/06 10:31 PM Page CCCXXVII
ADMB Book #2 24/8/06 10:31 PM Page CCCXXVIII
PnOPMnR
tsMnR
CEnt
PRh
V2L
sf
V1
RSD
PaS
bic
BICECIC
ZoSuGOp
InG
InWh
DpG
DpWhDLPAG
DMPAG
PlPAG
AqLPAG
PrCnFDRL
DRD
DRVPDRisRt
RRF/A8
MiTgPBG
RR
4Nmlf
DRI
CLiPTgxscp
Rbd
ATgSPTg
MPLVLL
ILL
mcpvsc
Pr55TT
m5 A7 rs
s5sp5
7n
VeGn8vn
7n
ptgpal
TempPll
VLLCAT
MVPOlfp
mlPn
RtTg
tfp
bas
Figure 152P6 #49
7.23 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu5TT motor trigem, tensor tymp7n facial nerve8vn vestibular root of 8th nerveA7 A7 noradrenaline cellsAq aqueductATg anterior tegmental nubas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCAT nu central acoustic trCEnt caudomed entothinal cxCLi caudal linear nu rapheDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralECIC external cx inferior collILL intermed nu lat lemniscusInG intermed gray layer SCInWh intermediate white layer SCisRt isthmic reticular formlfp longitudinal fasciculus ponsll lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll PaS parasubiculumPBG parabigeminal nuPDR posterodors raphe nuPlPAG pleoglial PAGPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPrCnF precuneiform areaPRh perirhinal cxPTg pedunculopontine tegmentalptgpal pterygopalatine nRbd rhabdoid nuRR retrorubral nuRRF/A8 retrorubral/A8 dopaminers rubrospinal tractRSD retrosplenial dysgranular cxRtTg reticulotegmental nu ponss5 sensory root trigem nsf secondary fissuresp5 spinal trigem tractSPTg subpeduncular tegmental nuSuG superficial gray sup collTempP temporal bone, petroustfp transverse fibers ponsts tectospinal trV1 primary visual cortexV2L 2ary visual cx, lat areaVeGn vestibular n ganglionVLL ventral nu lat lemniscusvsc ventral spinocerebellar trxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #2 24/8/06 10:31 PM Page CCCXXIX
ADMB Book #2 24/8/06 10:31 PM Page CCCXXX
PnO
ts
ZoSuG
Op
InG
InWh
DpG
DLPAG
DMPAG
DpWh
LPAG
PrCnF
ECICBIC
bic
Aq
DRDDRL
MiTg
PBG
RRDLL
EGL
ILL
TrLL
PTg
isRtPa4
PDR DRV
DRI4N
4Sh
mlf
xscpSPTg
MPLvscKF
mcp
VeGn
VCA
s5Pr5
5TT
A7
P5
rs
m5
PMnR
RbdATg
MnR
RtTg
Pn
tzmlTz
pybas
MVPO
CATVLL
ll
vsc
7n
tz
ScTy
CDScVe
Corti
Figure 153P6 #50
7.35 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4N trochlear nu4Sh trochlear nu shell region5TT motor trigem, tensor tymp7n facial nerveA7 A7 noradrenaline cellsAq aqueductATg anterior tegmental nubas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCAT nu central acoustic trCD cochlear ductCorti organ of CortiDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralECIC external cx inferior collEGL external granular layer CbILL intermed nu lat lemniscusInG intermed gray layer SCInWh intermediate white layer SCisRt isthmic reticular formKF Kˆlliker-Fuse null lateral lemniscusLPAG lat periaqueductal graym5 motor root trigeminal nervemcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMPL medial paralemniscial nuMVPO medioventral periolivary nuOp optic nerve layer sup coll P5 peritrigeminal zonePa4 paratrochlear nuPBG parabigeminal nuPDR posterodors raphe nuPMnR paramedian raphe nuPn pontine nucleiPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPrCnF precuneiform areaPTg pedunculopontine tegmentalpy pyramidal trRbd rhabdoid nuRR retrorubral nurs rubrospinal tractRtTg reticulotegmental nu ponss5 sensory root trigem nScTy scala tympaniScVe scala vestibuliSPTg subpeduncular tegmental nuSuG superficial gray sup collTrLL triangular nu, lat lemniscusts tectospinal trTz nu trapezoid bodytz trapezoid bodyVCA ventral cochlear nu, ant VeGn vestibular n ganglionVLL ventral nu lat lemniscusvsc ventral spinocerebellar trxscp decussation sup cereb pedZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXI
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXII
PnO
Zo
SuG
Op
InG
InWh
DpG
DpWh
ECICBIC
bicDLPAG
DMPAG
LPAGAq
PrCnF
DRL
DRDCnF
MiTg
PBG
DLL
TrLLILL
ll
PTgscp
DRV
PDR
Pa4mlf
DRI
VTgSPTgMPL
KF
vscmcp
SubCDts
PFl
GrCbEGL
MoCbPk
5N
PMnR
MnR
RtTgPnC
P5
5TT
Pr5s5
VCA
8vn
tz
VeGn
TempP
8cn ScTy
vsc
7n rsA5
LVPO
MVPO
MSO
CAT
Tzpy
ml
RIP
basCorti
CDCGn
ScVe
Figure 154P6 #51
7.47 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5N motor trigeminal nu5TT motor trigem, tensor tymp7n facial nerve8cn cochlear root 8th nerve8vn vestibular root of 8th nerveA5 A5 noradrenaline cellsAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCAT nu central acoustic trCD cochlear ductCGn cochlear (spiral) ganglionCnF cuneiform nuCorti organ of CortiDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralECIC external cx inferior collEGL external granular layer CbGrCb granule cell layer cbILL intermed nu lat lemniscusInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse null lateral lemniscusLPAG lat periaqueductal grayLVPO lateroventral periolivary numcp middle cerebellar peduncleMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMoCb molecular layer CbMPL medial paralemniscial nuMSO medial superior oliveMVPO medioventral periolivary nuOp optic nerve layer sup coll P5 peritrigeminal zonePa4 paratrochlear nuPBG parabigeminal nuPDR posterodors raphe nuPFl paraflocculusPk Purkinje cell layer CbPMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral Pr5 principal sensory trigem nuPrCnF precuneiform areaPTg pedunculopontine tegmentalpy pyramidal trRIP raphe interpositus nurs rubrospinal tractRtTg reticulotegmental nu ponss5 sensory root trigem nscp superior Cb peduncleScTy scala tympaniScVe scala vestibuliSPTg subpeduncular tegmental nuSubCD subcoeruleus nu, dorsal SuG superficial gray sup collTempP temporal bone, petrousTrLL triangular nu, lat lemniscusts tectospinal trTz nu trapezoid bodytz trapezoid bodyVCA ventral cochlear nu, ant VeGn vestibular n ganglionvsc ventral spinocerebellar trVTg vent tegmental nuZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXIII
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXIV
SPTg
Zo
SuG
Op
InG
InWhDpG
DpWh
DLPAG
DMPAG
ECIC
Me5
LPAG
Aq
BIC
bic
PrCnF
DRL DRDCnFMiTg
PBG
PTg
scp
LDTg DRV
LDTgV
VTg
mlfDRI
DLLllpsf
Crus2
GrCb
Sim
EGL
MoCbplf
Pk
PFl
mcp
vsc
KF
Su5PnO
ts PMnR
MnR
RtTg
DMTg
SubCD
A7P5
5N
Pr5DM
VCA
Pr5VL m55TT SubCV
PnC8vntz
sp5
VeGn
8cn
7nrs
A5
LSOvsc
LVPO
SPO
MVPO
tz
MSO
Tzpy
ml
RIP
bas
Figure 155P6 #52
7.59 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5N motor trigeminal nu5TT motor trigem, tensor tymp7n facial nerve8cn cochlear root 8th nerve8vn vestibular root of 8th nerveA5 A5 noradrenaline cellsA7 A7 noradrenaline cellsAq aqueductbas basilar arteryBIC nu brachium inf colliculusbic brachium inf colliculusCnF cuneiform nuCrus2 crus 2 ansiform lobuleDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDpWh deep white superior collDRD dorsal raphe nu, dorsal DRI dorsal raphe, interfascicularDRL dorsal raphe nu, lateralDRV dorsal raphe nu, ventralECIC external cx inferior collEGL external granular layer CbGrCb granule cell layer cbInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse nuLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventll lateral lemniscusLPAG lat periaqueductal grayLSO lat superior oliveLVPO lateroventral periolivary num5 motor root trigeminal nervemcp middle cerebellar peduncleMe5 mesencephalic trigem nuMiTg microcell tegmental numl medial lemniscusmlf med longitudinal fasciculusMnR median raphe nuMoCb molecular layer CbMSO medial superior oliveMVPO medioventral periolivary nuOp optic nerve layer sup coll P5 peritrigeminal zonePBG parabigeminal nuPFl paraflocculusPk Purkinje cell layer Cbplf posterolateral fissurePMnR paramedian raphe nuPnC pontine reticular nu, caudalPnO pontine reticular nu, oral Pr5DM principal sens 5, dorsomedPr5VL principal sens 5, ventrolatPrCnF precuneiform areapsf post superior fissurePTg pedunculopontine tegmentalpy pyramidal trRIP raphe interpositus nurs rubrospinal tractRtTg reticulotegmental nu ponsscp superior Cb peduncleSim simple lobulesp5 spinal trigem tractSPO superior paraolivary nuSPTg subpeduncular tegmental nuSu5 supratrigeminal nuSubCD subcoeruleus nu, dorsal SubCV subcoeruleus nu, ventral SuG superficial gray sup collts tectospinal trTz nu trapezoid bodytz trapezoid bodyVCA ventral cochlear nu, ant VeGn vestibular n ganglionvsc ventral spinocerebellar trVTg vent tegmental nuZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXV
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXVI
7n
TzMVPOLVPO
LSO
DPO
SPO
MSOA5
SubCV
5N
SubCD
5ADiDMTg
RtTgP
PnRSu5
SPTg
LDTgV
LDTg
MPBLPBE
LPBC
LPBS
Sag
Pk
Pr5DM
VCA
plf
Pr5VL8cn
sp5
ll
rs
vsc
m5
ll
DLL
PFl
tz
ml
RtTg
PnC
PTg
bic
ECIC
CnF
DpWh
DpG
DRV
DRD
VLPAG
LPAG
DLPAG
DMPAG
mlf
InWh
InG
Op
SuG
Zo
pybas
RPa
RMgPnV
RIP
KF VTg
scp
neAq
pfs
pfsEGL
GrCb
Crus1
Simvsc
cbw
MoCb
Figure 156P6 #53
7.71 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5ADi motor trigem, ant digastric5N motor trigeminal nu7n facial nerve8cn cochlear root 8th nerveA5 A5 noradrenaline cellsAq aqueductbas basilar arterybic brachium inf colliculuscbw cerebellar white matterCnF cuneiform nuCrus1 crus 1 ansiform lobuleDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDPO dorsal periolivary regionDpWh deep white superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralECIC external cx inferior collEGL external granular layer CbGrCb granule cell layer cbInG intermed gray layer SCInWh intermediate white layer SCKF Kˆlliker-Fuse nuLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventll lateral lemniscusLPAG lat periaqueductal grayLPBC lat parabrachial nu, centralLPBE lat parabrachial nu, externalLPBS lat parabrachial nu, supLSO lat superior oliveLVPO lateroventral periolivary num5 motor root trigeminal nerveml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMPB medial parabrachial nuMSO medial superior oliveMVPO medioventral periolivary nune neuroepitheliumOp optic nerve layer sup coll PFl paraflocculuspfs parafloccular sulcusPk Purkinje cell layer Cbplf posterolateral fissurePnC pontine reticular nu, caudalPnR pontine raphe nuPnV pontine retic nu, ventralPr5DM principal sens 5, dorsomedPr5VL principal sens 5, ventrolatPTg pedunculopontine tegmentalpy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractRtTg reticulotegmental nu ponsRtTgP reticuloteg nu, pericentralSag sagulum nuscp superior Cb peduncleSim simple lobulesp5 spinal trigem tractSPO superior paraolivary nuSPTg subpeduncular tegmental nuSu5 supratrigeminal nuSubCD subcoeruleus nu, dorsal SubCV subcoeruleus nu, ventral SuG superficial gray sup collTz nu trapezoid bodytz trapezoid bodyVCA ventral cochlear nu, ant VLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trVTg vent tegmental nuZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXVII
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXVIII
baspy
PnVRMg
ml
PnCIRt
7n
5ADi
6RB
RIP
LSOSPO
MSO
MVPOLVPO
TzRPa
RtTg
PnR
RtTgLDMTg
SubCD
Su5
5NP5
VTg
SubCA
LDTgV
DTgP
mlf
DRVMPBBar
LDTg
vsc
rsA5
CGn
VCA
VeGn 8cn
I8 tz
sp5
Pr5VL
m5LR4V
Fl
Pr5DM
KF
cbwPFl
plf
pfs
vscSim
EGL
Crus1
psf
RL DLLLPBS
LPBC
PTgscp
LPBE
CnFVLPAG
DRD
AqLPAG
CIC
DLPAG
DMPAG
Op
InG
InWh
DpG
Zo
SuG
ECIC
bic
Crus1
Figure 157P6 #54
7.83 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5ADi motor trigem, ant digastric5N motor trigeminal nu6RB abducens, retractor bulbi7n facial nerve8cn cochlear root 8th nerveA5 A5 noradrenaline cellsAq aqueductBar Barrington’s nubas basilar arterybic brachium inf colliculuscbw cerebellar white matterCGn cochlear (spiral) ganglionCIC central nu inf colliculusCnF cuneiform nuCrus1 crus 1 ansiform lobuleDLL dorsal nu lateral lemniscusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDRD dorsal raphe nu, dorsal DRV dorsal raphe nu, ventralDTgP dors tegmental nu, pericentECIC external cx inferior collEGL external granular layer CbFl flocculusI8 interstitial nu 8th nerveInG intermed gray layer SCInWh intermediate white layer SCIRt intermed reticular nuKF Kˆlliker-Fuse nuLDTg laterodor tegmental nuLDTgV laterodor tegmental nu, ventLPAG lat periaqueductal grayLPBC lat parabrachial nu, centralLPBE lat parabrachial nu, externalLPBS lat parabrachial nu, supLR4V lat recess 4th ventricleLSO lat superior oliveLVPO lateroventral periolivary num5 motor root trigeminal nerveml medial lemniscusmlf med longitudinal fasciculusMPB medial parabrachial nuMSO medial superior oliveMVPO medioventral periolivary nuOp optic nerve layer sup coll P5 peritrigeminal zonePFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePnC pontine reticular nu, caudalPnR pontine raphe nuPnV pontine retic nu, ventralPr5DM principal sens 5, dorsomedPr5VL principal sens 5, ventrolatpsf post superior fissurePTg pedunculopontine tegmentalpy pyramidal trRIP raphe interpositus nuRL retrolemniscal nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractRtTg reticulotegmental nu ponsRtTgL reticulotegmental pons, latscp superior Cb peduncleSim simple lobulesp5 spinal trigem tractSPO superior paraolivary nuSu5 supratrigeminal nuSubCA subcoeruleus nu, alpha SubCD subcoeruleus nu, dorsal SuG superficial gray sup collTz nu trapezoid bodytz trapezoid bodyVCA ventral cochlear nu, ant VeGn vestibular n ganglionVLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trVTg vent tegmental nuZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXXXIX
ADMB Book #2 24/8/06 10:35 PM Page CCCXL
baspy
rstz
plf
pfs
cbw
mlf
mlvsc
scp
ne
vsc
plf
RPaRMg
GrALPGi
7N
P7SuS
A5
7SH
7n IRt
SubCD
DMTg
PnCRIP
4V
EVe CGB
PCRtA
LR4V VCA
I8
Pr5DM
Pr5VL
sp5
5Tr
8cn
Fl
PFl
Sim
LPBE
KF
Su5
LPB
MPBE
EGL
RL
SubCA
LC Bar
LDTg
VLPAG
DTgP
DTgC
DRC
2Cb
LPAG
DLPAG
DMPAGDpG
CnF
CIC
ECIC
Crus1
Crus1
InWh
InG
Op
SuG
Zo
Figure 158P6 #55
7.95 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2Cb 2nd cerebellar lobule4V 4th ventricle5Tr trigem transition zone7N facial nu7n facial nerve7SH facial motor nu, stylohyoid8cn cochlear root 8th nerveA5 A5 noradrenaline cellsBar Barrington’s nubas basilar arterycbw cerebellar white matterCGB central gray, beta partCIC central nu inf colliculusCnF cuneiform nuCrus1 crus 1 ansiform lobuleDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDMTg dorsomed tegmental areaDpG deep gray superior collDRC dorsal raphe nu, caudal DTgC dors tegmental nu, centralDTgP dors tegmental nu, pericentECIC external cx inferior collEGL external granular layer CbEVe nu origin efferents ve nFl flocculusGrA granule cell, acc olf bulbI8 interstitial nu 8th nerveInG intermed gray layer SCInWh intermediate white layer SCIRt intermed reticular nuKF Kˆlliker-Fuse nuLC locus coeruleusLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleml medial lemniscusmlf med longitudinal fasciculusMPBE med parabrachial nu extne neuroepitheliumOp optic nerve layer sup coll P7 perifacial zonePCRtA parvicell reticular nu, alphaPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePnC pontine reticular nu, caudalPr5DM principal sens 5, dorsomedPr5VL principal sens 5, ventrolatpy pyramidal trRIP raphe interpositus nuRL retrolemniscal nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractscp superior Cb peduncleSim simple lobulesp5 spinal trigem tractSu5 supratrigeminal nuSubCA subcoeruleus nu, alpha SubCD subcoeruleus nu, dorsal SuG superficial gray sup collSuS superior salivatory nutz trapezoid bodyVCA ventral cochlear nu, ant VLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXLI
ADMB Book #2 24/8/06 10:35 PM Page CCCXLII
bas
6n
tz rs
sp58n
8cn
8vn
7n
py
vsc
ocb mlf
ml
Pr5
SuS
GrC
DC
VCP
7DL
7L
7DI
7VI7DM
7VM LPGiGiA
RMg
RPa
GiRIP
7SH
IRtSuSPCRtA
6N4V
CGGEVe SGe
CGO
CGB
KF
5Tr
MVeMC
MVePC
SuVeLR4V
Fl
Lat
cbw
scp
icf LC
Sim
LPB
MPBLPBE
Bar
CnF
LDTg
DTgPDTgC
DRC
VLPAG
ECIC
CIC
DCIC
LPAG
DLPAGDMPAG
Com
psf
EGL
2Cb
Crus1
Zo
SuG
Op
Crus1
icf
pfs Crus2
PFl
plf
CGA
Figure 159P6 #56
8.07 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2Cb 2nd cerebellar lobule4V 4th ventricle5Tr trigem transition zone6N abducens nu6n root of abducens nerve7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7n facial nerve7SH facial motor nu, stylohyoid7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8cn cochlear root 8th nerve8n vestibulocochlear nerve8vn vestibular root of 8th nerveBar Barrington’s nubas basilar arterycbw cerebellar white matterCGA central gray, alpha partCGB central gray, beta partCGG central gray, gamma partCGO central gray, nu OCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDC dorsal cochlear nuDCIC dors cx inf colliculusDLPAG dorsolat periaqueductal grayDMPAG dorsomed periaqueductl grayDRC dorsal raphe nu, caudal DTgC dors tegmental nu, centralDTgP dors tegmental nu, pericentECIC external cx inferior collEGL external granular layer CbEVe nu origin efferents ve nFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrC granule cell, cochlear nuicf intercrural fissureIRt intermed reticular nuKF Kˆlliker-Fuse nuLat lateral (dentate) Cb nuLC locus coeruleusLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleml medial lemniscusmlf med longitudinal fasciculusMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulocb olivocochlear bundleOp optic nerve layer sup coll PCRtA parvicell reticular nu, alphaPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePr5 principal sensory trigem nupsf post superior fissurepy pyramidal trRIP raphe interpositus nuRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractscp superior Cb peduncleSGe supragenual nuSim simple lobulesp5 spinal trigem tractSuG superficial gray sup collSuS superior salivatory nuSuVe superior vestibular nutz trapezoid bodyVCP vent cochlear nu, posterior VLPAG ventlat periaqueductal grayvsc ventral spinocerebellar trZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXLIII
ADMB Book #2 24/8/06 10:35 PM Page CCCXLIV
bas
vsc
tzrs
ml
py
cbw
icp
g7sp5
pfs
icf
plf
7L
7DL 7DI
7VI 7DM
7VMRPa
RMg
GiA
P7
PFl
Lat
LPB
MPBscp
Crus2
Sim
CnF
LPBI
Bar
LDTgDTgP
Sph
PDTg
PrSGeCGA
CGG
IRt
LPGi
7SH
PCRtA
6N
Gi
DPGi
mlf
EVe
SuVe
MVePC
VeMC
Pr5VCP
DC
DCMo
VCCap8vn
GrC
Fl
LR4V
LPBE
Crus1
vsc EGL
psf
DRC
4V
4V
3Cb
2Cb
ReICLPAG
DMPAGCIC
Zo
SuG
DCIC
ComECIC
Crus1
Me5
LC
Figure 160P6 #57
8.19 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2Cb 2nd cerebellar lobule3Cb 3rd cerebellar lobule4V 4th ventricle6N abducens nu7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7SH facial motor nu, stylohyoid7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8vn vestibular root of 8th nerveBar Barrington’s nubas basilar arterycbw cerebellar white matterCGA central gray, alpha partCGG central gray, gamma partCIC central nu inf colliculusCnF cuneiform nuCom commissural nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDC dorsal cochlear nuDCIC dors cx inf colliculusDCMo dors cochlear nu, molecularDMPAG dorsomed periaqueductl grayDPGi dors paragigantocellular nuDRC dorsal raphe nu, caudal DTgP dors tegmental nu, pericentECIC external cx inferior collEGL external granular layer CbEVe nu origin efferents ve nFl flocculusg7 genu facial nerveGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrC granule cell, cochlear nuicf intercrural fissureicp inf cerebellar peduncleIRt intermed reticular nuLat lateral (dentate) Cb nuLC locus coeruleusLDTg laterodor tegmental nuLPAG lat periaqueductal grayLPB lateral parabrachial nuLPBE lat parabrachial nu, externalLPBI lat parabrachial nu, internalLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMe5 mesencephalic trigem numl medial lemniscusmlf med longitudinal fasciculusMPB medial parabrachial nuMVeMC med vestib nu, magnocellulMVePC med vestib nu, parvicellulP7 perifacial zonePCRtA parvicell reticular nu, alphaPDTg posterodors tegmental nuPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePr prepositus nuPr5 principal sensory trigem nupsf post superior fissurepy pyramidal trReIC recess inferior collRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractscp superior Cb peduncleSGe supragenual nuSim simple lobulesp5 spinal trigem tractSph sphenoid nuSuG superficial gray sup collSuVe superior vestibular nutz trapezoid bodyVCCap vent cochlear nu, capsular VCP vent cochlear nu, posterior vsc ventral spinocerebellar trZo zona layer sup coll
ADMB Book #2 24/8/06 10:35 PM Page CCCXLV
ADMB Book #2 24/8/06 10:35 PM Page CCCXLVI
icf
pfs
plf
vsc
scp
icp
vespmlf
sp5tz
8n
ts
py
bas
rsvsc
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7L
7DL 7DI
7VI7DM
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C1
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Fl
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DCMo
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DMSp5
Sp5I
XDCDp
DCFu
VCCap SpVe
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MVeMC
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MVePC
PCRtA IRt
Gi
GiARMg
RPa ml
Pr
PDTg
DPGi
4V
GrC
Lat
IntA
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SphDRC
LPB LPBI
MPB4VDTgP
ECIC
CIC
4Cb
2/3Cb
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pcuf
Pk
MoCb
Sim
Crus1
psf
DCIC
Com
DMPAG
ReIC
DMPAG
cbw
EGL
Crus1
Crus2
GrC
PFl
Figure 161P6 #58
8.31 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2/3Cb 2nd/3rd cerebellarlobules4Cb 4th cerebellar lobule4V 4th ventricle5Sol trigeminal-solitary trans7DI facial nu, dors intermedial7DL facial nu, dorsolateral7DM facial nu, dorsomedial7L facial nu, lateral subnu7SH facial motor nu, stylohyoid7VI 7 nu, ventral intermediate7VM facial nu, ventromedial8n vestibulocochlear nervebas basilar arteryC1 C1 adrenaline cellscbw cerebellar white matterCIC central nu inf colliculusCom commissural nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDCDp dors cochlear nu, deep coreDCFu dors cochlear nu, fusiformDCIC dors cx inf colliculusDCMo dors cochlear nu, molecularDMPAG dorsomed periaqueductl grayDMSp5 dorsomed spinal trigem nuDPGi dors paragigantocellular nuDRC dorsal raphe nu, caudal DTgP dors tegmental nu, pericentECIC external cx inferior collEGL external granular layer CbFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrC granule cell, cochlear nuicf intercrural fissureicp inf cerebellar peduncleIntA interposed cerebellar nu, antIRt intermed reticular nuLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLC locus coeruleusLDTg laterodor tegmental nuLPB lateral parabrachial nuLPBI lat parabrachial nu, internalLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMe5 mesencephalic trigem numl medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMPB medial parabrachial nuMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulP7 perifacial zonePCRtA parvicell reticular nu, alphapcuf preculminate fissurePDTg posterodors tegmental nuPFl paraflocculuspfs parafloccular sulcusPk Purkinje cell layer Cbplf posterolateral fissurePr prepositus nupsf post superior fissurepy pyramidal trReIC recess inferior collRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractscp superior Cb peduncleSim simple lobulesp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSph sphenoid nuSpVe spinal vestibular nuSuVe superior vestibular nuts tectospinal trtz trapezoid bodyVCCap vent cochlear nu, capsular VCP vent cochlear nu, posterior VeCb vestibulocerebellar nuvesp vestibulospinal trvsc ventral spinocerebellar trX nu XY nu Y
ADMB Book #2 24/8/06 10:35 PM Page CCCXLVII
ADMB Book #2 24/8/06 10:35 PM Page CCCXLVIII
prfSim
ECICCIC
DCIC
Com
Crus1
psf
4/5Cb
EGL
Crus1
icf
Crus2
cbw
IntDL
IntA
Latpfs
Pk
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2/3CbGrCb
SMVMed
VeCbscp
LatPCcbwLVeY
chp
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Pr
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plf
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DCFu
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sp5
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8cnVCCap
JugF
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10GnBOcc
C1PPy
LPGi
Gi
DPGi
mlf
ts
GiA RMg
ml
py bas
RPa
LC
Figure 162P6 #59
8.43 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
2/3Cb 2nd/3rd cerebellarlobules4/5Cb 4th/5th cerebellar lobules4V 4th ventricle5Sol trigeminal-solitary trans7N facial nu7SH facial motor nu, stylohyoid8cn cochlear root 8th nerve10Gn vagus nerve ganglionbas basilar arteryBOcc basioccipital boneC1 C1 adrenaline cellscbw cerebellar white matterchp choroid plexusCIC central nu inf colliculusCom commissural nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDCDp dors cochlear nu, deep coreDCFu dors cochlear nu, fusiformDCIC dors cx inf colliculusDCMo dors cochlear nu, molecularDMSp5 dorsomed spinal trigem nuDPGi dors paragigantocellular nuECIC external cx inferior collEGL external granular layer CbFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrC granule cell, cochlear nuGrCb granule cell layer cbicf intercrural fissureicp inf cerebellar peduncleIntA interposed cerebellar nu, antIntDL interposed, dorsolat humpIRt intermed reticular nuIS inferior salivatory nuJugF jugular foramenLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLC locus coeruleusLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMed medial cerebellar numl medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulP7 perifacial zonePCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusPk Purkinje cell layer Cbplf posterolateral fissurePPy parapyramidal nuPr prepositus nuprf primary fissurepsf post superior fissurepy pyramidal trRMg raphe magnus nuRPa raphe pallidus nurs rubrospinal tractS9Gn superior ganglion 9nscp superior Cb peduncleSim simple lobuleSMV superior medullary velumsol solitary tractSolIM nu sol tract, intermediateSolM nu sol tract, medialSolRL nu sol tract, rostrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSpVe spinal vestibular nuts tectospinal trtz trapezoid bodyVCCap vent cochlear nu, capsular VCP vent cochlear nu, posterior VeCb vestibulocerebellar nuvsc ventral spinocerebellar trX nu XY nu Y
ADMB Book #2 24/8/06 10:35 PM Page CCCXLIX
ADMB Book #2 24/8/06 10:36 PM Page CCCL
Med
ECIC
CIC
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prf
Sim 4/5Cb
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RMg
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bas
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10GnI9Gn
Figure 163P6 #60
8.55 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
1Cb 1st cerebellar lobule2/3Cb 2nd/3rd cerebellarlobules4/5Cb 4th/5th cerebellar lobules4V 4th ventricle5Sol trigeminal-solitary trans7N facial nu7SH facial motor nu, stylohyoid9/10/11n 9n, 10n, and 11n10Gn vagus nerve ganglionbas basilar arteryBo Botzinger complexBOcc basioccipital boneC1 C1 adrenaline cellscbw cerebellar white matterCIC central nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDCDp dors cochlear nu, deep coreDCFu dors cochlear nu, fusiformDCIC dors cx inf colliculusDCMo dors cochlear nu, molecularDMSp5 dorsomed spinal trigem nuDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trECIC external cx inferior collEGL external granular layer CbFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrC granule cell, cochlear nuGrCb granule cell layer cbI9Gn inferior ganglion 9nicf intercrural fissureicp inf cerebellar peduncleIntA interposed cerebellar nu, antIntDL interposed, dorsolat humpIntP interposed cerebellar nu, postIRt intermed reticular nuIS inferior salivatory nuJugF jugular foramenLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMed medial cerebellar numl medial lemniscusmlf med longitudinal fasciculusMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulPCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusPk Purkinje cell layer Cbplf posterolateral fissurePM paramedian lobulePPy parapyramidal nuPr prepositus nuprf primary fissurepsf post superior fissurepy pyramidal trRMg raphe magnus nuROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVL rostroventrolat retic nuS9Gn superior ganglion 9nscp superior Cb peduncleSim simple lobulesol solitary tractSolDL sol nu, dorsolateralSolIM nu sol tract, intermediateSolM nu sol tract, medialSolRL nu sol tract, rostrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSp5O spinal trigeml nu, oralSpVe spinal vestibular nuTempP temporal bone, petrousts tectospinal trVCPO vent cochlear, post, octopusVeCb vestibulocerebellar nuvsc ventral spinocerebellar trX nu XY nu Y
ADMB Book #2 24/8/06 10:36 PM Page CCCLI
ADMB Book #2 24/8/06 10:36 PM Page CCCLII
SpVe MVeMCMVePC
SolDM
SolMSolIMSolV
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sp5
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icp
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Med cbwIntAIntDL
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Sim
icfCrus1
Crus1
pfs
ECIC
CIC
DCIC
5Cb
GrCbprf
apmf
plf
Figure 164P6 #61
8.67mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Cb 5th cerebellar lobule5Sol trigeminal-solitary trans10Cb 10th cerebellar lobuleapmf ansoparamedian fissurebas basilar arteryBo Botzinger complexC1 C1 adrenaline cellscbw cerebellar white matterCIC central nu inf colliculusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDCDp dors cochlear nu, deep coreDCFu dors cochlear nu, fusiformDCIC dors cx inf colliculusDCMo dors cochlear nu, molecularDMSp5 dorsomed spinal trigem nuDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trECIC external cx inferior collEGL external granular layer CbFl flocculusGi gigantocellular reticular nuGiA gigantocellular retic, alphaGrCb granule cell layer cbicf intercrural fissureicp inf cerebellar peduncleIntA interposed cerebellar nu, antIntDL interposed, dorsolat humpIntP interposed cerebellar nu, postIOD inf olive, dorsal nuIOM inf olive, med nuIRt intermed reticular nuIS inferior salivatory nuLat lateral (dentate) Cb nuLatPC lat Cb nu, parvicellLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleLVe lateral vestibular nuMed medial cerebellar nuMedL medial Cb nu, lateralml medial lemniscusmlf med longitudinal fasciculusMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulP7 perifacial zonePCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePM paramedian lobulePr prepositus nuprf primary fissurepy pyramidal trRMg raphe magnus nuROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractscp superior Cb peduncleSim simple lobulesol solitary tractSolDM nu sol tract, dorsomedSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuts tectospinal trVCP vent cochlear nu, posterior VeCb vestibulocerebellar nuvsc ventral spinocerebellar trX nu X
ADMB Book #2 24/8/06 10:36 PM Page CCCLIII
ADMB Book #2 24/8/06 10:36 PM Page CCCLIV
MedL
Med
MedDL
ECIC
Crus1psf
Sim
Crus1
icf
6Cb
prf
5Cb
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apmf cbw
PM
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pfs
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sol
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Pr
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Gi
AmbC
rs Bo
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LPGi
GiV
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PMn
4V
SolDM
Figure 165P6 #62
8.79 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Cb 5th cerebellar lobule5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule10Cb 10th cerebellar lobule10n vagus nerve12N hypoglossal nuAmbC ambiguus nu, compact partapmf ansoparamedian fissurebas basilar arteryBo Botzinger complexC1 C1 adrenaline cellscbw cerebellar white matterCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDCMo dors cochlear nu, molecularDMSp5 dorsomed spinal trigem nuDPGi dors paragigantocellular nudsc/oc dors spino / olivocereb trECIC external cx inferior collEGL external granular layer CbFl flocculusFVe F cell group vestibGi gigantocellular reticular nuGiV gigantocellular retic, venticf intercrural fissureicp inf cerebellar peduncleIntP interposed cerebellar nu, postIntPPC interposed, post parvicellularIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMed medial cerebellar nuMedDL medial Cb, dorsolat protubMedL medial Cb nu, lateralml medial lemniscusmlf med longitudinal fasciculusMVeMC med vestib nu, magnocellMVePC med vestib nu, parvicellulMx matrix region medullaPCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusplf posterolateral fissurePM paramedian lobulePMn paramedian reticular nuPr prepositus nuprf primary fissurepsf post superior fissurepy pyramidal trRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVL rostroventrolat retic nuSim simple lobulesol solitary tractSolDM nu sol tract, dorsomedSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuts tectospinal trvsc ventral spinocerebellar trX nu X
ADMB Book #2 24/8/06 10:36 PM Page CCCLV
ADMB Book #2 24/8/06 10:36 PM Page CCCLVI
IntP
Med
MedDL
ECIC
EGL
MoCb6Cb
GrCb
Pk
Sim
psfCrus1
Crus1
icf
Crus2
cbw
apmf
PM
5Cb
7Cb
GrCb
10Cb
4VMVeSpVeECu
pfs
PFl
plf FlXicp
LR4V
chp
sp5DMSp5
SolDMsol
SolV
SolVL
5Sol
MxFVe
SolIMSolM
10N12N
Pr
Ro
PCRtSp5I
dsc/oc
11n
rsvsc
PrBo
AmbC
LiIRt
Gi
GiV
C1 LPGi IOD
IOPr
pybas
IOMml
RPa
IODMts
mlf
ROb
Figure 166P6 #63
8.91 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Cb 5th cerebellar lobule5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule7Cb 7th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus11n root of accessory nerve 12N hypoglossal nuAmbC ambiguus nu, compact partapmf ansoparamedian fissurebas basilar arteryC1 C1 adrenaline cellscbw cerebellar white matterchp choroid plexusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleDMC dorsomed hy nu, compactDMSp5 dorsomed spinal trigem nudsc/oc dors spino / olivocereb trECIC external cx inferior collECu external cuneate nuEGL external granular layer CbFl flocculusFVe F cell group vestibGi gigantocellular reticular nuGiV gigantocellular retic, ventGrCb granule cell layer cbicf intercrural fissureicp inf cerebellar peduncleIntP interposed cerebellar nu, postIOD inf olive, dorsal nuIODM inf olive, dorsomed cell groupIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuLi linear nu of the medullaLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMed medial cerebellar nuMedDL medial Cb, dorsolat protubml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMVe medial vestibular nuMx matrix region medullaPCRt parvicell reticular nuPFl paraflocculuspfs parafloccular sulcusPk Purkinje cell layer Cbplf posterolateral fissurePM paramedian lobulePr prepositus nuPrBo pre-Botzinger complexpsf post superior fissurepy pyramidal trRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractSim simple lobulesol solitary tractSolDM nu sol tract, dorsomedSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuts tectospinal trvsc ventral spinocerebellar trX nu X
ADMB Book #2 24/8/06 10:36 PM Page CCCLVII
ADMB Book #2 24/8/06 10:36 PM Page CCCLVIII
PFl
Sim
6Cbpsf
Crus1
EGL
Crus1
Crus2
icf
cbw
apmf
PM
pfs
MedDLMed
7Cb
9Cb
Pk
GrCb
MoCb
10Cb
4VZPr
In
12N10N
SolM
MVeSolDL
SolIMSolV
SolVL
SolL
5Sol
Mx
ECu SpVe
Ro
mlf
ts
RObGi
IRtPCRt
DMSp5
IntP
CCrus
LR4V
chp
sp5
Sp5I
dsc/oc
TempP
PFlCvLi
Li
AmbSC
RVRG
CVLC1 LPGi
IOD
IOPr
IOMpy bas
RPa
IODMrs
vsc
S9Gn
JugFOcc
12C
12n
ml
sol
Figure 167P6 #64
9.03 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule7Cb 7th cerebellar lobule9Cb 9th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12C hypoglossal canal12N hypoglossal nu12n root of hypoglossal nerveAmbSC ambiguus nu, subcompactapmf ansoparamedian fissurebas basilar arteryC1 C1 adrenaline cellscbw cerebellar white matterCCrus common crus chp choroid plexusCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleCVL caudoventrolat reticular nuDMSp5 dorsomed spinal trigem nudsc/oc dors spino / olivocereb trECu external cuneate nuEGL external granular layer CbGi gigantocellular reticular nuGrCb granule cell layer cbicf intercrural fissureIn intercalated nu medullaIntP interposed cerebellar nu, postIOD inf olive, dorsal nuIODM inf olive, dorsomed cell groupIOM inf olive, med nuIOPr inf olive, principal nuIRt intermed reticular nuJugF jugular foramenLi linear nu of the medullaLPGi lat paragigantocellular nuLR4V lat recess 4th ventricleMed medial cerebellar nuMedDL medial Cb, dorsolat protubml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMVe medial vestibular nuMx matrix region medullaOcc occipital bonePCRt parvicell reticular nuPFl paraflocculusPFlCv parafloccular cavitypfs parafloccular sulcusPk Purkinje cell layer CbPM paramedian lobulePr prepositus nupsf post superior fissurepy pyramidal trRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVRG rost vent respiratoryS9Gn superior ganglion 9nSim simple lobulesol solitary tractSolDL sol nu, dorsolateralSolIM nu sol tract, intermediateSolL nu sol tract, lateralSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuTempP temporal bone, petrousts tectospinal trvsc ventral spinocerebellar trZ nu Z
ADMB Book #2 24/8/06 10:36 PM Page CCCLIX
ADMB Book #2 24/8/06 10:36 PM Page CCCLX
cbw
Pk
EGL
9Cb
EGL
psfCrus1
Crus1
icf
Crus2
Sim
6Cb
GrCb7Cb
Pk
MoCb
psf
apmf
PM
ppf
CCrus
Cop10Cb
AP
4V
10N
12N
Ro
In
SolM
SolGSubP
MVeSpVeCu
Mx
SolVL
SolVSolIM
SolCe
PSol
SolDL
5SolDMSp5
ECu
Pa5
Sp5I
sp5
LR4V
chp
PCRt IRt
Li Gi
LRt
Lidsc/oc
rs
12n
vsc
LRtS5
C1
AmbSC
RVRG
mlf
tsROb
IOBeIOVL
IOD
IOPr
py
IOMml
bas
Figure 168P6 #65
9.15mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule7Cb 7th cerebellar lobule9Cb 9th cerebellar lobule10Cb 10th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveAmbSC ambiguus nu, subcompactAP area postremaapmf ansoparamedian fissurebas basilar arteryC1 C1 adrenaline cellscbw cerebellar white matterCCrus common crus chp choroid plexusCop copula pyramisCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleCu cuneate nuDMSp5 dorsomed spinal trigem nudsc/oc dors spino / olivocereb trECu external cuneate nuEGL external granular layer CbGi gigantocellular reticular nuGrCb granule cell layer cbicf intercrural fissureIn intercalated nu medullaIOBe inf olive, beta subnuIOD inf olive, dorsal nuIOM inf olive, med nuIOPr inf olive, principal nuIOVL inf olive, ventrolateralIRt intermed reticular nuLi linear nu of the medullaLR4V lat recess 4th ventricleLRt lateral reticular nuLRtS5 lat reticular nu, subtrigeminalml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMVe medial vestibular nuMx matrix region medullaPa5 paratrigeminal nuPCRt parvicell reticular nuPk Purkinje cell layer CbPM paramedian lobuleppf prepyramidal fissurepsf post superior fissurePSol parasolitary nupy pyramidal trRo nu of RollerROb raphe obscurus nurs rubrospinal tractRVRG rost vent respiratorySim simple lobuleSolCe nu sol tract, centralSolDL sol nu, dorsolateralSolG nu sol tract, gelatinousSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSpVe spinal vestibular nuSubP subpostrema areats tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXI
ADMB Book #2 24/8/06 10:36 PM Page CCCLXII
9Cb
6Cb
7Cb
psfCrus1
Crus1
icf
cbw
8Cb
sf
cbw
MoCb
GrCb
PkCrus2
PM
ppf
EGL
Cop
4V
chpPa5
sp5ECu
Cu
DMSp55Sol
MxPSol
SolVLSolV 10N
SolM
SubP
APGr
SolG
SolCe
SolIM
SolDL
Sp5I
sp5
PCRtIRt
Gi
12N
Romlf
ROb
ts
IOBe
IOVLLRt
IOD
IOBIOC
ml
baspy
IOPr12n
AmbL
RVRG
C1/A1
LRtrsdsc
LRtS5vsc
LRtPC
Figure 169P6 #66
9.27 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
4V 4th ventricle5Sol trigeminal-solitary trans6Cb 6th cerebellar lobule7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveAmbL ambiguus nu, loose partAP area postremabas basilar arteryC1/A1 adren/ noradrenaline cellscbw cerebellar white matterchp choroid plexusCop copula pyramisCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleCu cuneate nuDMSp5 dorsomed spinal trigem nudsc dorsal spinocereb tractECu external cuneate nuEGL external granular layer CbGi gigantocellular reticular nuGr gracile nuGrCb granule cell layer cbicf intercrural fissureIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOD inf olive, dorsal nuIOPr inf olive, principal nuIOVL inf olive, ventrolateralIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularLRtS5 lat reticular nu, subtrigeminalml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPa5 paratrigeminal nuPCRt parvicell reticular nuPk Purkinje cell layer CbPM paramedian lobuleppf prepyramidal fissurepsf post superior fissurePSol parasolitary nupy pyramidal trRo nu of RollerROb raphe obscurus nurs rubrospinal tractRVRG rost vent respiratorysf secondary fissureSolCe nu sol tract, centralSolDL sol nu, dorsolateralSolG nu sol tract, gelatinousSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSubP subpostrema areats tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXIII
ADMB Book #2 24/8/06 10:36 PM Page CCCLXIV
Sp5IMdD
IRt
MdV
12GH
12N
10N
SolM
7Cb
8Cb
Crus1
icf
Crus2
apmf
PM
ppf
GrCb MoCbPk
EGLsf
9Cbcbw
Cop
ECu
Pk
CuPa5
pms
sf
sp5
dsc/oc
5Sol Mx
APGr
PSol
SolVSolVL
SubPSolG
SolIM
AmbL
SolDL
PrLSprs
11n
vsc
12n
C1/A1
LRtRVRGLRtS5
LRtPCIOPr
IOD
IOB
IOC
IOA pyml
bas
IOBe
RPa
IOVL
ts
mlf
CC
SolCesol
Figure 170P6 #67
9.39 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
5Sol trigeminal-solitary trans7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus11n root of accessory nerve 12GH hypoglossal nu, geniohyoid12N hypoglossal nu12n root of hypoglossal nerveAmbL ambiguus nu, loose partAP area postremaapmf ansoparamedian fissurebas basilar arteryC1/A1 adren/ noradrenaline cellscbw cerebellar white matterCC central canalCop copula pyramisCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleCu cuneate nudsc/oc dors spino / olivocereb trECu external cuneate nuEGL external granular layer CbGr gracile nuGrCb granule cell layer cbicf intercrural fissureIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOD inf olive, dorsal nuIOPr inf olive, principal nuIOVL inf olive, ventrolateralIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularLRtS5 lat reticular nu, subtrigeminalMdD medullary reticular nu, dorsMdV medullary reticular nu, ventml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPa5 paratrigeminal nuPk Purkinje cell layer CbPM paramedian lobulepms paramedian sulcusppf prepyramidal fissurePrLSp pre lateral spinalPSol parasolitary nupy pyramidal trRPa raphe pallidus nurs rubrospinal tractRVRG rost vent respiratorysf secondary fissuresol solitary tractSolCe nu sol tract, centralSolDL sol nu, dorsolateralSolG nu sol tract, gelatinousSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5I spinal trigem nu, interpolarSubP subpostrema areats tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXV
ADMB Book #2 24/8/06 10:36 PM Page CCCLXVI
Sp5C
MdD
IRt
MdV
7Cb
MoCb
Crus1icf
Crus2
apmf
PM
ppf
8Cb
GrCb
sf
Pk
Cop
pms
cbw
GrCb
9Cb
EGLGr
Cu AP
SolMSolC
CC
12N
10NMx
CuRsol
SolV
SolVLCeCvSolIM
PSolSolDL
sp5
Sp5I
dsc/ocrs
vsc
LRt
AmbL
LRtS5
PrLSp RVRG
A1/C1
IOD
IOCIOBIOA
LRtPC py basml
RPa
IOBeIOK
ts
mlfROb
Figure 171P6 #68
9.51 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nuA1/C1 noradrenaline/adren cellsAmbL ambiguus nu, loose partAP area postremaapmf ansoparamedian fissurebas basilar arterycbw cerebellar white matterCC central canalCeCv central cervical nu Cop copula pyramisCrus1 crus 1 ansiform lobuleCrus2 crus 2 ansiform lobuleCu cuneate nuCuR cuneate nu, rotundus partdsc/oc dors spino / olivocereb trEGL external granular layer CbGr gracile nuGrCb granule cell layer cbicf intercrural fissureIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOD inf olive, dorsal nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularLRtS5 lat reticular nu, subtrigeminalMdD medullary reticular nu, dorsMdV medullary reticular nu, ventml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer CbPM paramedian lobulepms paramedian sulcusppf prepyramidal fissurePrLSp pre lateral spinalPSol parasolitary nupy pyramidal trROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVRG rost vent respiratorysf secondary fissuresol solitary tractSolC nu sol tract, comm partSolDL sol nu, dorsolateralSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarts tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXVII
ADMB Book #2 24/8/06 10:36 PM Page CCCLXVIII
7Cb
cbw
Crus2
apmf
PM cbw
8Cb
Cop
ppfsf
EGL
MoCbGrCbPk
cbw 9Cb
pms Gr AP SubP
SolC
SolDLSolIM
10NSolVsol
SolVL
MxCuR
CuSolM
CC
CeCv 12N
Ro
MdV
Sp5Csp5
MdD IRt
Sp5I
dsc/oc
PrLSp
rs
vsc
LRtPC
LRtA1/C1
RVRG
RAmb
12n
IOA
IOBIOC
IOBets
mlf
IOK
ROb
RPa
vert
py ml
Figure 172P6 #69
9.63 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nu12n root of hypoglossal nerveA1/C1 noradrenaline/adren cellsAP area postremaapmf ansoparamedian fissurecbw cerebellar white matterCC central canalCeCv central cervical nu Cop copula pyramisCrus2 crus 2 ansiform lobuleCu cuneate nuCuR cuneate nu, rotundus partdsc/oc dors spino / olivocereb trEGL external granular layer CbGr gracile nuGrCb granule cell layer cbIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularMdD medullary reticular nu, dorsMdV medullary reticular nu, ventml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer CbPM paramedian lobulepms paramedian sulcusppf prepyramidal fissurePrLSp pre lateral spinalpy pyramidal trRAmb retroambiguus nuRo nu of RollerROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractRVRG rost vent respiratorysf secondary fissuresol solitary tractSolC nu sol tract, comm partSolDL sol nu, dorsolateralSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarSubP subpostrema areats tectospinal trvert vertebral artvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXIX
ADMB Book #2 24/8/06 10:36 PM Page CCCLXX
cbw9Cb
MoCbGrCb Pk
sf
8Cb
7Cbppf
EGL
Cop
cu
CuR
Cu GrAP SubP
SolC
10N
CeCv 12N
Mx
MdD
SolVLSolV
solSolDL
SolM
CCSolIM
Sp5Csp5
Sp5I
PrLSp
rsdsc
vscLRt
A1
RAmb
IRt
LRtPCIOA
IOB
py
ml
IOC
RObts
IOBe
MdV mlf IOK
vert
RPa
Figure 173P6 #70
9.75 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus12N hypoglossal nuA1 A1 noradrenaline cellsAP area postremacbw cerebellar white matterCC central canalCeCv central cervical nu Cop copula pyramisCu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractEGL external granular layer CbGr gracile nuGrCb granule cell layer cbIOA inf olive, subnu A medial nuIOB inf olive, subnu B med nuIOBe inf olive, beta subnuIOC inf olive, subnu C of med nuIOK inf olive, cap of Kooy med nuIRt intermed reticular nuLRt lateral reticular nuLRtPC lat reticular nu, parvicellularMdD medullary reticular nu, dorsMdV medullary reticular nu, ventml medial lemniscusmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer Cbppf prepyramidal fissurePrLSp pre lateral spinalpy pyramidal trRAmb retroambiguus nuROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractsf secondary fissuresol solitary tractSolC nu sol tract, comm partSolDL sol nu, dorsolateralSolIM nu sol tract, intermediateSolM nu sol tract, medialSolV sol nu, ventral partSolVL nu sol tract, ventrolateralsp5 spinal trigem tractSp5C spinal trigem nu, caudalSp5I spinal trigem nu, interpolarSubP subpostrema areats tectospinal trvert vertebral artvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXXI
ADMB Book #2 24/8/06 10:36 PM Page CCCLXXII
GrCb
ppf
8Cb
EGL PkMoCb
9Cb
sf
Sp5Csp5
cuCu
CuRMx
MdD
IRt12N
Gr
solSolC
CC
CeCv
SolLSolV
SolM
10N
SolIM
ROb11N
MdV mlf
ts
py
RPa
IOA
11n
LRt
RAmb
PrLSprs A1dsc
vsc
vert
7Cb
Figure 174P6 #71
9.87 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
7Cb 7th cerebellar lobule8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule10N dorsal motor nu of vagus11N accessory nerve nu11n root of accessory nerve 12N hypoglossal nuA1 A1 noradrenaline cellsCC central canalCeCv central cervical nu Cu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractEGL external granular layer CbGr gracile nuGrCb granule cell layer cbIOA inf olive, subnu A medial nuIRt intermed reticular nuLRt lateral reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventmlf med longitudinal fasciculusMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer Cbppf prepyramidal fissurePrLSp pre lateral spinalpy pyramidal trRAmb retroambiguus nuROb raphe obscurus nuRPa raphe pallidus nurs rubrospinal tractsf secondary fissuresol solitary tractSolC nu sol tract, comm partSolIM nu sol tract, intermediateSolL nu sol tract, lateralSolM nu sol tract, medialSolV sol nu, ventral partsp5 spinal trigem tractSp5C spinal trigem nu, caudalts tectospinal trvert vertebral artvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXXIII
ADMB Book #2 24/8/06 10:36 PM Page CCCLXXIV
GrCb 9Cb
MoCb
PkEGL
8Cbsf
GrcuCu
CuR Mx
grMnA
SolCSolMCC
12Nmlx
CeCvIRtMdD
Sp5C
Ge5
sp5
rsdsc
vsc
A1
PrLSp
RAmb
MdV
11N tsmlf
py
IB
Figure 175P6 #72
9.99 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
8Cb 8th cerebellar lobule9Cb 9th cerebellar lobule11N accessory nerve nu12N hypoglossal nuA1 A1 noradrenaline cellsCC central canalCeCv central cervical nu Cu cuneate nucu cuneate fasciculusCuR cuneate nu, rotundus partdsc dorsal spinocereb tractEGL external granular layer CbGe5 gelatinous layer caudal Sp5Gr gracile nugr gracile fasciculusGrCb granule cell layer cbIB interstitial nu medullaIRt intermed reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventmlf med longitudinal fasciculusmlx med lemniscus decussationMnA median access nu medullaMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer CbPrLSp pre lateral spinalpy pyramidal trRAmb retroambiguus nurs rubrospinal tractsf secondary fissureSolC nu sol tract, comm partSolM nu sol tract, medialsp5 spinal trigem tractSp5C spinal trigem nu, caudalts tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:36 PM Page CCCLXXV
ADMB Book #2 24/8/06 10:37 PM Page CCCLXXVI
MdD
IRt
MdV
Sp5C
sp5
EGL
MoCb Pk 9CbGrCb
GrMnA
grcu
CuIB Mx
SolC
CC
CeCvia
SolM
11N ts
mlf pyx
pyvsc
dscrs A1
Figure 176P6 #73
10.11 mm
Atlas of the Developing Mouse Brain Paxinos Halliday Watson Koutcherov Wang 0 0.2 0.4 0.6 0.8 1.0 mm
9Cb 9th cerebellar lobule11N accessory nerve nuA1 A1 noradrenaline cellsCC central canalCeCv central cervical nu Cu cuneate nucu cuneate fasciculusdsc dorsal spinocereb tractEGL external granular layer CbGr gracile nugr gracile fasciculusGrCb granule cell layer cbia internal arcuate fibersIB interstitial nu medullaIRt intermed reticular nuMdD medullary reticular nu, dorsMdV medullary reticular nu, ventmlf med longitudinal fasciculusMnA median access nu medullaMoCb molecular layer CbMx matrix region medullaPk Purkinje cell layer Cbpy pyramidal trpyx pyramidal decussationrs rubrospinal tractSolC nu sol tract, comm partSolM nu sol tract, medialsp5 spinal trigem tractSp5C spinal trigem nu, caudalts tectospinal trvsc ventral spinocerebellar tr
ADMB Book #2 24/8/06 10:37 PM Page CCCLXXVII
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