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Workflow Manager Interface Requirements. Login Page. Annotator Screen Level 1: Deposition Summary. Filter (This is essential when one covers duty for another one. They all have read and write access on all the entries.) Global filter plus individual filter for each tab. - PowerPoint PPT Presentation
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Workflow Manager Interface Requirements
Login Page
Filter (This is essential when one covers duty for another one. They all have read and write access on all the entries.) Global filter plus individual filter for each tab.
Default tabs (list PROC and entries for corrections which were assigned to login person only, Filtered entries shown the ones based on filter query when cover for other person). It is annotators’ understanding that when depositors send corrections through deposition website after processing, there will be a notification to annotators. The second tab “Author’s Corrections” is the list of entries which depositors has sent corrections.
PROC Entries
Author’s Corrections
Filtered entries Entries requested for release
Problem/Error entries
Annotator Initials
Status Author’s name PDB id Deposition id SG centers
Deposition id
Exp method
PDB id
Accession code
Coordinate Status
Exp data status
Author release status
Deposition date
Annotator Initials
Selections to view level 2 (check box?)
Relationship
Associated PDB ids
1bdc Xray 1abc
PROC
PROC HPUB
2009-11-01
CS SPR/OBS
1a12, 1a13
2bdc NMR 2abc
4334 PROC
PROC HPUB
2009-12-03
CS SPR/OBS
2a12
3bdc EM 3abc
EM1234
PROC
PROC REL 2009-12-03
CS SPLIT 6abc, 7abc
4bdc Xray 4abc
PROC
PROC REL 2009-12-03
CS Related 1abc, 5abc
Annotator Screen Level 1: Deposition Summary
The pdb id is four alphanumerical characters. Deposition id TBD. The PROC table should pre-sorted by REL in Auth Status, then by Deposition date.
It is annotators’ understanding that when depositors send corrections through deposition website after processing, there will be a notification to annotators. The second tab “Author’s Corrections” is the list of entries which depositors has sent corrections.
PROC Entries
Author’s Corrections
Filtered entries
Entries requested for release
Problem/Error entries
Deposition id
Exp method
PDB id
Accession code
Coordinate Status
Exp data status
Author release status
Deposition date
Annotator Initials
Selections to view level 2 (check box?)
Corrections
1bdc Xray 1abc HPUB HPUB HPUB 2009-01-01
CS Header
2bdc NMR 2abc 4334 AUTH AUTH REL 2009-08-01
CS Coordinates
3bdc EM 3abc EM1234
HOLD HOLD HOLD 2009-12-01
CS Sequence
4bdc Xray 4abc AUTH AUTH HPUB 2009-06-01
CS Ligand
Level 2 TBD: date, content (header, sequence, coordinates, etc.)
Annotator Initials
Status Author’s name PDB id Deposition id SG centers
Filter (This is essential when one covers duty for another one. They all have read and write access on all the entries.) Global filter plus individual filter for each tab.
Default tabs (list PROC and entries for corrections which were assigned to login person only, Filtered entries shown the ones based on filter query when cover for other person). It is annotators’ understanding that when depositors send corrections through deposition website after processing, there will be a notification to annotators. The second tab “Author’s Corrections” is the list of entries which depositors has sent corrections.
PROC Entries Author’s Corrections
Filtered entries Entries requested for release
Problem/Error entries
Annotator Initials
Status Author’s name PDB id Deposition id SG centers
Deposition id
Exp method
PDB id
Accession code
Coordinate Status
Exp data status
Author release status
Deposition date
Annotator Initials
Selections to view level 2 (check box?)
Relationship
Associated PDB ids
SG center
1bdc Xray 1abc HPUB
HPUB
HPUB
2009-01-01
BD SPR/OBS
1a12, 1a13
2bdc NMR 2abc 4334 HPUB
HPUB
HPUB
2009-02-03
MZ SPR/OBS
2a12
3bdc EM 3abc EM1234
AUTH
AUTH
REL 2009-02-03
IP SPLIT 6abc, 7abc
4bdc Xray 4abc AUTH
AUTH
REL 2009-02-03
CS Related 1abc, 5abc
NESG
Annotator Screen Level 1: Deposition Summary
PROC Entries Author’s Corrections
Filtered entries Entries requested for release
Problem/Error entries
Annotator Initials
Status Author’s name PDB id Deposition id SG centers
Deposition id
Exp method
PDB id
Accession code
Coordinate Status
Exp data status
Author release status
Deposition date
Annotator Initials
Selections to view level 2 (check box?)
Relationship
Associated PDB ids
Citation
1bdc Xray 1abc HPUB
HPUB
HPUB
2009-01-01
CS related
1a12, 1a13
Structure, Volume 17, Issue 12, 1591-1604
2bdc NMR 2abc 4334 HPUB
HPUB
HPUB
2009-02-03
CS related
2a12 Structure, Volume 17, Issue 12, 1591-1604
3bdc EM 3abc EM1234
AUTH
AUTH
REL 2009-02-03
CS related
6abc, 7abc
Structure, Volume 17, Issue 12, 1591-1604
4bdc Xray 4abc AUTH
AUTH
REL 2009-02-03
CS
Annotator Screen Level 1: Deposition Summary
Filter (This is essential when one covers duty for another one. They all have read and write access on all the entries.) Global filter plus individual filter for each tab.
PROC Entries Author’s Corrections
Filtered entries Entries requested for release
Problem/Error entries
Annotator Initials
Status Author’s name PDB id Deposition id SG centers
Deposition id
Exp method
PDB id
Accession code
Coordinate Status
Exp data status
Author release status
Deposition date
Annotator Initials
Selections to view level 2 (check box?)
Relationship
Associated PDB ids
Problem/Error Type of problem/error
1bdc
Xray
1abc
HPUB
HPUB
HPUB
2009-01-01
CS related
1a12 Problem
Sequence
2bdc
NMR
2abc
4334
HPUB
HPUB
HPUB
2009-02-03
CS Error Validation crash
3bdc
EM 3abc
EM1234
AUTH
AUTH
REL 2009-02-03
CS Error External sequence alignment
4bdc
Xray
4abc
AUTH
AUTH
REL 2009-02-03
CS Problem Ligand
Annotator Screen Level 1: Deposition Summary
Text Edit
LigandSequenc
eCalculat
e derived
data
PISA
Validation
Fix prochiral/moving waters/e
tc.
Annotator Screen Level 2: Workflow Summary & Status by Unique IDs
Pull down Actions:Go to level 3 interfaceView log fileUpload fileDownload fileUpdate common data on related entries
View final files
Color key:Green- completedOrange- annotator input neededRed- problemWhite- not done
Create report/Send files
Deposition id 1bdcPDB ID 1abc
Request re-assign
View author’s correspondence
Citation Update/Release
Contact depositor
Status update
View author’s corrections
Other WF
Routine WF
System requirements:•Upload and download files should be available in case of escape route•Can have multiple interface views by selected IDs •Dynamic update•Individual window pop up for each ID, not in the tab, nor in the same window•Level 1 window stays while accessing level 2•Order of the tasks TBD: some could be parallel, some could be in serial. Some may need to be in specific order.
Annotator Screen Level 2: Workflow Summary & Status by Unique IDs
Text Edit
Ligand
Sequence
Calculate derived data
PISA
Deposition id 1bdc
PDB ID 1abc
Text Edit
Ligand
Sequence
Calculate derived data
PISA
Deposition id 2bdcPDB ID 2abc
Annotator Screen Level 3: Specific Task for Unique ID
Start Text Edit
LigandSeque
nce Align
Calculate
derived data
PISAValidat
ion
Fix prochiral/movi
ng waters/
etc.
Send Files
Actions:Go to processing history reportContact depositor/create reportRequest Lead/coordinator assistanceView log file
Deposition id
PDB id
Coordinate Status
Exp data status
Annotator Initials
Workflow name
Workflow version
Workflow id Task status Actions
1bdc 1abc PROC PROC CS Ligand finished Retrieve version
1bdc 1abc PROC PROC CS PISA executing Stop
1bdc 1abc PROC PROC CS Sequence alignment
stopped Re-run
2bdc 2abc PROC PROC CS Ligand finished View log file
2bdc 2abc PROC PROC CS PISA timeout Bypass
2bdc 2abc PROC PROC CS Sequence alignment
crashed Report bug
Annotator Screen Detail Processing History For Selected IDs from Level 1
Lead Annotator Group Main Page
Filters for data; Different Tab on screen;
Magic number
Set privilege for other annotators
Typo on Status
Tab: Problems/Errors
Go to level 4
Tab: Annotation Stats
Tab: Statistics
Should be removed
Should be be replace by two columns: “Processing Site” and “Deposition Site”
No need to show Filter on Assignments or Statistics
