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CYTOSCAP E VISUALIZATION AND ANALYSIS OF NETWORK/INTERACTION

WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

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Page 1: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

CYTOSCAPE

VISUALIZATION AND ANALYSISOF NETWORK/INTERACTION DATA

Page 2: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

WHAT IS CYTOSCAPE?

WHAT CAN I DO WITH IT?

HOW DO I IMPORT DATA?

HOW DO I VISUALIZE DATA?

HOW DO I ANALYZE DATA?

WHERE CAN I LEARN MORE?

OUTLINE

Page 3: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

WHAT IS CYTOSCAPE?

Page 4: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

FREE OPEN-SOURCE PLATFORM TO VISUALIZE AND ANALYZE NETWORK DATA

LARGE & ACTIVE USER-DEVELOPER COMMUNITY MAKES IT UNIQUE

CYTOSCAPE CORE (CURRENTLY V.2.7), ADDITIONAL FUNCTIONS VIA PLUGINS

Page 5: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

WHAT CAN I DO WITH IT?

Page 6: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

VISUALIZEINTERACTIONS

Page 7: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

PAINT NETWORK WITH DATA

Page 8: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

ANALYZE A NETWORK

Page 9: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

ADD A VIEWER TO YOUR SITE

Page 10: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

HOW DO I IMPORT DATA?

Page 11: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

SEARCH FROM WITHIN CYTOSCAPE

Page 12: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

Page 13: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

IMPORT YOUR OWN DATA

Page 14: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

Page 15: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

NODE ATTRIBUTES

Page 16: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

HOW DO I VISUALIZE

DATA?

Page 17: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

VIZMAPPER

Page 18: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

HOW DO I ANALYZE

DATA?

Page 19: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

Page 20: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

CYOOG PLUGIN

Page 21: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

HUBBA PLUGIN

Page 22: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

GET CREATIVE

Page 23: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

WHERE CAN I LEARN MORE?

Page 24: WHAT IS CYTOSCAPE? WHAT CAN I DO WITH IT? HOW DO I IMPORT DATA? HOW DO I VISUALIZE DATA? HOW DO I ANALYZE DATA? WHERE CAN I LEARN MORE?

CYTOSCAPE.ORG

PMID: 17947979

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